Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015201
(1453 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_848889.1| PREDICTED: similar to lysosomal-associated memb... 488 e-138
Alignment gi|XP_538159.2| PREDICTED: similar to lysosomal-associated memb... 100 5e-21
Alignment gi|XP_864542.1| PREDICTED: similar to lysosomal-associated memb... 100 5e-21
Alignment gi|XP_864590.1| PREDICTED: similar to Lysosome-associated membr... 99 8e-21
Alignment gi|XP_851885.1| PREDICTED: similar to lysosomal-associated memb... 98 2e-20
Alignment gi|XP_534193.2| PREDICTED: similar to Lysosome-associated membr... 96 1e-19
Alignment gi|XP_856022.1| PREDICTED: similar to Lysosome-associated membr... 96 1e-19
Alignment gi|XP_849733.1| PREDICTED: similar to CD68 antigen isoform 2 [C... 86 7e-17
Alignment gi|XP_546594.1| PREDICTED: similar to CD68 antigen isoform 1 [C... 81 3e-15
>ref|XP_848889.1| PREDICTED: similar to lysosomal-associated membrane protein 3 [Canis
familiaris].
Length = 479
Score = 488 bits (1256), Expect = e-138
Identities = 276/473 (58%), Positives = 304/473 (64%), Gaps = 1/473 (0%)
Frame = +1
Query: 1 VNEGQRECLLCYRSLPRN*PSALFR-RPSCSEL*VLQPLGETTMSWRXXXXXXXXXXXXX 177
+NEGQRE + R + SE V+ G+ MSW+
Sbjct: 11 MNEGQREVSSLFLEPALELAQCSSEDREALSEAVVIS--GDPVMSWQLSAAVALFVSLAL 68
Query: 178 XXHYGHHMKAKVFPEITDSSSPTTAATVQATAEPSLWKPTNHTPHKTLAAKSTDGHVTSQ 357
HYG ++AK+FPE D PTTAATV+ATA+P L TN P +TLAA+S DGH+ SQ
Sbjct: 69 ILHYGSQIRAKMFPETVDFQ-PTTAATVRATAKPFLHL-TNQVPSQTLAARSMDGHIASQ 126
Query: 358 IXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHMAAPVTEA 537
+ AAPVTEA
Sbjct: 127 RAATTSSSEPPTTHTTVKTLVTTSLVTANSTPSSSPIIYTLVTTIVTPNNSNTAAPVTEA 186
Query: 538 AISPSAGLSSLLXXXXXXXXXXXXRSSTLSPTAGKTTQPSNQTTLPATLSTSPHNSTASQ 717
I PSA SL STLS KTT NQTTLPATLSTS H ST+S
Sbjct: 187 TIGPSADPGSLPTTSTPLAHTTRTNPSTLSHKTRKTTHFGNQTTLPATLSTSTHKSTSSH 246
Query: 718 KXXXXXXXXXXXXXAHNTTQTASPATIAPGPTLAPQPSSAKTGIYQVLNGSKLCIKAEMG 897
K AHNTTQTASPAT A GPTLAPQPSS KTGIYQVLNGS+LCIKAEMG
Sbjct: 247 KSAQSTHAPGPTTAAHNTTQTASPATPASGPTLAPQPSSPKTGIYQVLNGSRLCIKAEMG 306
Query: 898 IELTVQDTQSVFSPQRYFNIDPNTTQASGNCGSRKSKLLLNFQGGFVNLTFTKDENSYYV 1077
IEL VQDT+SVFSPQRYF
Animal-Genome cDNA 20110601C-015201
Animal-Genome cDNA 20110601C-015201
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015201
(1453 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001095605.1| lysosome-associated membrane glycoprotein 3 ... 439 e-123
Alignment gi|NP_001029742.1| lysosomal-associated membrane protein 2 isof... 101 2e-21
Alignment gi|NP_001106715.1| lysosomal-associated membrane protein 2 isof... 100 3e-21
Alignment gi|NP_001068592.1| lysosome-associated membrane glycoprotein 1 ... 98 2e-20
Alignment gi|NP_001039367.1| macrosialin [Bos taurus]. 94 2e-19
>ref|NP_001095605.1| lysosome-associated membrane glycoprotein 3 [Bos taurus].
Length = 433
Score = 439 bits (1129), Expect = e-123
Identities = 245/413 (59%), Positives = 271/413 (65%), Gaps = 2/413 (0%)
Frame = +1
Query: 184 HYGHHMKAKVFPEITDSSSPTTAATVQATAEPSLWKPTNHTPHKTLAAKSTDGHVTSQIX 363
HY HM+AKVFPEIT SSPTT QAT +PSL +PTN+ PHKT AA+STDGHVTSQ
Sbjct: 24 HYNSHMQAKVFPEITGYSSPTTG---QATVKPSLLQPTNYVPHKTAAARSTDGHVTSQTV 80
Query: 364 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHMAAPVTEAAI 543
H+ PVTEA +
Sbjct: 81 AKTSSSETLTTNTTIDVLATTSPVTTKSTLPTTPTTHTLVTTLATPNKSHVTFPVTEAKV 140
Query: 544 SPSAGLSSLLXXXXXXXXXXXXRSSTLSPTAGKTTQPSNQTTLPATLSTSPHNSTASQKX 723
S G SS R ST S T GKTTQ SNQTTLPATLSTSPHN T SQK
Sbjct: 141 GLSVGPSSPPVTVNPTAHTTGNRPSTASHTTGKTTQLSNQTTLPATLSTSPHNITTSQKP 200
Query: 724 XXXXXXXXXXXXAHNTTQTASPATIAPGPTLAPQPSSAKTGIYQVLNGSKLCIKAEMGIE 903
+NTTQTASPATIAP PTLAPQP S KTGIYQV NGSKLCIKAEMGI+
Sbjct: 201 TQPTHTPGPTTATYNTTQTASPATIAPRPTLAPQPLSPKTGIYQVHNGSKLCIKAEMGIQ 260
Query: 904 LTVQDTQSVFSPQRYFNIDPNTTQASGNCGSRKSKLLLNFQGGFVNLTFTKDENSYYVSG 1083
LTVQD+ SVFSPQ+YFNIDPN TQASGNCGSRKS LLLNFQGGFVNLTFTK E SYY+S
Sbjct: 261 LTVQDSVSVFSPQKYFNIDPNATQASGNCGSRKSNLLLNFQGGFVNLTFTKGEKSYYISE 320
Query: 1084 VGAYLTVSNPEKVYQGMKNAVVMFETMIGHSFKCISEQSIQLSPHLQLNTMNVQLQAFDF 1263
V AYLTVSNP KVYQG+K+A++MFET++GHSFKC+SEQSIQLS +LQL TMNVQLQAFDF
Sbjct: 321 VEAYLTVSNPAKVYQGLKHAMMMFETVVGHSFKCVSEQSIQLSTYLQLKTMNVQLQAFDF 380
Query: 1264 EDDHFGNVDECSSDYT-IVLPV-IGAIVLGLCAVGLIVYGIRLKRESSEYQRI 1416
EDDHFGN DEC SD +PV +G + L AV L + KR S Y+R+
Sbjct: 381 EDDHFGNADECISDRNRREIPVAVGLSIAVLLAVLLTACLVTRKRPSRGYERM 433
>ref|NP_001029742.1| lysosomal-associated membrane protein 2 isoform 2 [Bos taurus].
Length = 407
Score = 101 bits (251), Expect = 2e-21
Identities = 67/220 (30%), Positives = 113/220 (51%), Gaps = 4/220 (1%)
Frame = +1
Query: 769 TTQTASPATIAPGPTLAPQPSSAKTGIYQVLNGSKLCIKAEMGIELTVQDTQSVFSPQRY 948
T TA P PT P P+ G Y V+N + C+ A MG++L + +
Sbjct: 197 TVTTAVPIV----PTTLPSPTKPVVGSYSVVNSNGTCLLATMGLQLNITHDKVA----SV 248
Query: 949 FNIDPNTTQASGNCGSRKSKLLLNFQG-GFVNLTFT-KDENSYYVSGVGAYLTVSNPEKV 1122
FNI+PNTT A+G+C + + L L+ +++ F K+EN +Y+ V + + N V
Sbjct: 249 FNINPNTTNATGSCQPQTALLRLSSSNIKYLDFVFAVKNENRFYLKEVNVSMILVNGS-V 307
Query: 1123 YQGMKNAVVMFETMIGHSFKCISEQSIQLSPHLQLNTMNVQLQAFDFEDDHFGNVDECS- 1299
Y + ++ +G S+ C EQ++ +S Q+NT ++++Q F + + ECS
Sbjct: 308 YSISNTNLSYWDAPLGSSYMCNKEQTVSVSGAFQINTFDLRVQPFSVTEGKYSTAQECSL 367
Query: 1300 SDYTIVLPVI-GAIVLGLCAVGLIVYGIRLKRESSEYQRI 1416
D TI++P+I GA + GL V +I Y I ++ + YQ +
Sbjct: 368 DDDTILIPIIVGAGLSGLIIVIVIAYLIGRRKSYAGYQTL 407
>ref|NP_001106715.1| lysosomal-associated membrane protein 2 isoform 1 [Bos taurus].
Length = 407
Score = 100 bits (249), Expect = 3e-21
Identities = 63/219 (28%), Positives = 113/219 (51%), Gaps = 4/219 (1%)
Frame = +1
Query: 769 TTQTASPATIAPGPTLAPQPSSAKTGIYQVLNGSKLCIKAEMGIELTVQDTQSVFSPQRY 948
T TA P PT P P+ G Y V+N + C+ A MG++L + +
Sbjct: 197 TVTTAVPIV----PTTLPSPTKPVVGSYSVVNSNGTCLLATMGLQLNITHDKVA----SV 248
Query: 949 FNIDPNTTQASGNCGSRKSKLLLNFQG-GFVNLTFT-KDENSYYVSGVGAYLTVSNPEKV 1122
FNI+PNTT A+G+C + + L L+ +++ F K+EN +Y+ V + + N V
Sbjct: 249 FNINPNTTNATGSCQPQTALLRLSSSNIKYLDFVFAVKNENRFYLKEVNVSMILVNGS-V 307
Query: 1123 YQGMKNAVVMFETMIGHSFKCISEQSIQLSPHLQLNTMNVQLQAFDFEDDHFGNVDECSS 1302
Y + ++ +G S+ C EQ++ +S Q+NT ++++Q F + + +CS+
Sbjct: 308 YSISNTNLSYWDAPLGSSYMCNKEQTVSVSGAFQINTFDLRVQPFSVTEGKYSTAQDCSA 367
Query: 1303 -DYTIVLPV-IGAIVLGLCAVGLIVYGIRLKRESSEYQR 1413
D ++P+ +GA + G+ + L+ Y I LKR + Y++
Sbjct: 368 DDDNFLVPIAVGAALAGVLILVLLAYFIGLKRHHAGYEQ 406
>ref|NP_001068592.1| lysosome-associated membrane glycoprotein 1 precursor [Bos taurus].
Length = 409
Score = 97.8 bits (242), Expect = 2e-20
Identities = 68/218 (31%), Positives = 110/218 (50%), Gaps = 10/218 (4%)
Frame = +1
Query: 793 TIAPGPTLAPQPSSAKTGIYQVLNGSKLCIKAEMGIELTVQ----DTQSVFSPQRYFNID 960
T P P P P+S Y V + C+ A MG++L V D ++V R FN++
Sbjct: 195 TTPPQPAPTPAPASPAVFRYNVSGSNGTCLLASMGLQLNVTYRRVDNKTV---TREFNVN 251
Query: 961 PNTTQASGNCGSRKSKLLLNFQGGFV-NLTFTKDENSYYVSGVGAYLTVSNP---EKVYQ 1128
PN T GNC + + L L+ + + L F +E+S V G L ++ P E +
Sbjct: 252 PNKTTFGGNCSATLATLELHSENLLLLALQFVMNESSSRVFLQGVQLNLTLPDAKEGSFT 311
Query: 1129 GMKNAVVMFETMIGHSFKCISEQSIQLSPHLQLNTMNVQLQAFDFEDDHFGNVDECSSD- 1305
+++ + G+S+KC +EQ ++++ LN V LQAF + D FG V+EC D
Sbjct: 312 ATNSSLRALQATAGNSYKCNAEQRLRVTSSFSLNMFRVWLQAFRVDGDKFGPVEECQLDE 371
Query: 1306 YTIVLPV-IGAIVLGLCAVGLIVYGIRLKRESSEYQRI 1416
++++P+ +G + GL + L+ Y I KR + YQ I
Sbjct: 372 NSMLIPIAVGGALAGLVLIVLLAYLIGRKRSHAGYQTI 409
>ref|NP_001039367.1| macrosialin [Bos taurus].
Length = 335
Score = 94.4 bits (233), Expect = 2e-19
Identities = 79/273 (28%), Positives = 130/273 (47%), Gaps = 13/273 (4%)
Frame = +1
Query: 631 TAGKTTQPSNQTTLPATLSTSPHNSTASQKXXXXXXXXXXXXXAHNTTQTASPATIAPGP 810
T G T+ S T +TS N+T ++ T + P+T +P P
Sbjct: 76 TTGTTSSESPTATHSPATTTSHQNTTVHPT-------------SNITATSPGPSTRSPHP 122
Query: 811 TLAPQPSSAK-----TGIYQVLNGSKLCIKAEMGIELTV-QDTQSVFSPQRYFNIDPNTT 972
P PS + G Y NGS+ C++ + I++ V TQ ++PN T
Sbjct: 123 EPPPSPSPSPGSKEAIGDYTWSNGSQPCVRLQAQIQIRVLYPTQGGGEAWGISVLNPNRT 182
Query: 973 QASGNCGSRKSKLLLNFQGGFVNLTFTKD--ENSYYVSGVGAYLTVSNPEKV---YQGMK 1137
+A G C S LLL+F G ++ F +D +++ Y++ + VS P+ V +
Sbjct: 183 KAQGGCEGTHSHLLLSFPSGQLSFGFKQDPLQSAVYLNYMAVEYNVSFPQAVQWTFSVQN 242
Query: 1138 NAVVMFETMIGHSFKCISEQSIQLSPHLQLNTMNVQLQAFDFE-DDHFGNVDECSSDYTI 1314
+++ +T +GHSF C SI +SP L L+ ++++LQA FG C +D +I
Sbjct: 243 SSLRDLQTPLGHSFSC-RNASIIVSPALHLDLLSLKLQAAQLSPSGAFGPSFSCPNDKSI 301
Query: 1315 VLP-VIGAIVLGLCAVGLIVYGIRLKRESSEYQ 1410
+LP +IG I+LGL + L+ + I ++R YQ
Sbjct: 302 LLPLIIGLILLGLLTLVLVTFCI-IRRRPPTYQ 333
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 53,010,232
Number of extensions: 1454382
Number of successful extensions: 6850
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6696
Number of HSP's successfully gapped: 6
Length of query: 484
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 378
Effective length of database: 14,174,046
Effective search space: 5357789388
Effective search space used: 5357789388
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
NIDPN TQ SGNCGS+KS LLLNFQGGFVNLTF KDENSYY+
Sbjct: 307 IELMVQDTKSVFSPQRYFNIDPNATQTSGNCGSQKSNLLLNFQGGFVNLTFLKDENSYYI 366
Query: 1078 SGVGAYLTVSNPEKVYQGMKNAVVMFETMIGHSFKCISEQSIQLSPHLQLNTMNVQLQAF 1257
+ VGAYL VSNPEK+YQGMK++VVMFET +GHSFKC+SEQSIQLS HLQL TMNVQ QAF
Sbjct: 367 NEVGAYLAVSNPEKIYQGMKSSVVMFETGVGHSFKCVSEQSIQLSTHLQLKTMNVQFQAF 426
Query: 1258 DFEDDHFGNVDECSSDYTIVLPVIGAIVLGLCAVGLIVYGIRLKRESSEYQRI 1416
DFEDDHFGNVDECSSDYT+VLPVIGAIVLGLCAVGLIVYGI L+RESS YQRI
Sbjct: 427 DFEDDHFGNVDECSSDYTVVLPVIGAIVLGLCAVGLIVYGIHLRRESSGYQRI 479
>ref|XP_538159.2| PREDICTED: similar to lysosomal-associated membrane protein 2
precursor isoform 1 [Canis familiaris].
Length = 411
Score = 100 bits (248), Expect = 5e-21
Identities = 66/222 (29%), Positives = 115/222 (51%), Gaps = 5/222 (2%)
Frame = +1
Query: 766 NTTQTASPATIAPGPTLAPQPSSA-KTGIYQVLNGSKLCIKAEMGIELTVQDTQSVFSPQ 942
+TT + +T P PT P P + G Y V N + C+ A MG++L + +
Sbjct: 195 STTVVPTISTTTPSPTTTPTPKEKPEVGSYSVNNSNGTCLLATMGLQLNITHNKVA---- 250
Query: 943 RYFNIDPNTTQASGNCGSRKSKLLLNFQG-GFVNLTFT-KDENSYYVSGVGAYLTVSNPE 1116
NI+PNTT +G+C + + L LN +++ F K+EN +Y+ V + + N
Sbjct: 251 SVININPNTTDFTGSCQPQTALLRLNSSNIKYLDFVFAVKNENRFYLKEVNVSMYLVNGS 310
Query: 1117 KVYQGMKNAVVMFETMIGHSFKCISEQSIQLSPHLQLNTMNVQLQAFDFEDDHFGNVDEC 1296
V+ N + ++ +G S+ C EQ++ +S Q+NT ++++Q F+ + + EC
Sbjct: 311 -VFSIANNNLSYWDAPLGSSYMCNKEQTVSVSGAFQINTFDLRVQPFNVMEGKYSTAQEC 369
Query: 1297 S-SDYTIVLPVI-GAIVLGLCAVGLIVYGIRLKRESSEYQRI 1416
S D TI++P+I GA + GL V +I Y I ++ + YQ +
Sbjct: 370 SLDDDTILIPIIVGAGLSGLIIVIVIAYLIGRRKSYAGYQTL 411
>ref|XP_864542.1| PREDICTED: similar to lysosomal-associated membrane protein 2
precursor isoform 3 [Canis familiaris].
Length = 411
Score = 100 bits (248), Expect = 5e-21
Identities = 66/222 (29%), Positives = 115/222 (51%), Gaps = 5/222 (2%)
Frame = +1
Query: 766 NTTQTASPATIAPGPTLAPQPSSA-KTGIYQVLNGSKLCIKAEMGIELTVQDTQSVFSPQ 942
+TT + +T P PT P P + G Y V N + C+ A MG++L + +
Sbjct: 195 STTVVPTISTTTPSPTTTPTPKEKPEVGSYSVNNSNGTCLLATMGLQLNITHNKVA---- 250
Query: 943 RYFNIDPNTTQASGNCGSRKSKLLLNFQG-GFVNLTFT-KDENSYYVSGVGAYLTVSNPE 1116
NI+PNTT +G+C + + L LN +++ F K+EN +Y+ V + + N
Sbjct: 251 SVININPNTTDFTGSCQPQTALLRLNSSNIKYLDFVFAVKNENRFYLKEVNVSMYLVNGS 310
Query: 1117 KVYQGMKNAVVMFETMIGHSFKCISEQSIQLSPHLQLNTMNVQLQAFDFEDDHFGNVDEC 1296
V+ N + ++ +G S+ C EQ++ +S Q+NT ++++Q F+ + + EC
Sbjct: 311 -VFSIANNNLSYWDAPLGSSYMCNKEQTVSVSGAFQINTFDLRVQPFNVMEGKYSTAQEC 369
Query: 1297 S-SDYTIVLPVI-GAIVLGLCAVGLIVYGIRLKRESSEYQRI 1416
S D TI++P+I GA + GL V +I Y I ++ + YQ +
Sbjct: 370 SLDDDTILIPIIVGAGLSGLIIVIVIAYLIGRRKSYAGYQTL 411
>ref|XP_864590.1| PREDICTED: similar to Lysosome-associated membrane glycoprotein 2
precursor (LAMP-2) (CD107b antigen) isoform 4 [Canis
familiaris].
Length = 411
Score = 99.4 bits (246), Expect = 8e-21
Identities = 62/221 (28%), Positives = 115/221 (52%), Gaps = 5/221 (2%)
Frame = +1
Query: 766 NTTQTASPATIAPGPTLAPQPSSA-KTGIYQVLNGSKLCIKAEMGIELTVQDTQSVFSPQ 942
+TT + +T P PT P P + G Y V N + C+ A MG++L + +
Sbjct: 195 STTVVPTISTTTPSPTTTPTPKEKPEVGSYSVNNSNGTCLLATMGLQLNITHNKVA---- 250
Query: 943 RYFNIDPNTTQASGNCGSRKSKLLLNFQG-GFVNLTFT-KDENSYYVSGVGAYLTVSNPE 1116
NI+PNTT +G+C + + L LN +++ F K+EN +Y+ V + + N
Sbjct: 251 SVININPNTTDFTGSCQPQTALLRLNSSNIKYLDFVFAVKNENRFYLKEVNVSMYLVNGS 310
Query: 1117 KVYQGMKNAVVMFETMIGHSFKCISEQSIQLSPHLQLNTMNVQLQAFDFEDDHFGNVDEC 1296
V+ N + ++ +G S+ C EQ++ +S Q+NT ++++Q F+ + + +C
Sbjct: 311 -VFSIANNNLSYWDAPLGSSYMCNKEQTVSVSGAFQINTFDLRVQPFNVMEGKYSTAQDC 369
Query: 1297 SS-DYTIVLPV-IGAIVLGLCAVGLIVYGIRLKRESSEYQR 1413
S+ D ++P+ +GA + G+ + L+ Y I LKR + Y++
Sbjct: 370 SADDDNFLVPIAVGAALAGVLILVLLAYFIGLKRHHAGYEQ 410
>ref|XP_851885.1| PREDICTED: similar to lysosomal-associated membrane protein 2
precursor isoform 2 [Canis familiaris].
Length = 412
Score = 97.8 bits (242), Expect = 2e-20
Identities = 64/223 (28%), Positives = 112/223 (50%), Gaps = 6/223 (2%)
Frame = +1
Query: 766 NTTQTASPATIAPGPTLAPQPSSA-KTGIYQVLNGSKLCIKAEMGIELTVQDTQSVFSPQ 942
+TT + +T P PT P P + G Y V N + C+ A MG++L + +
Sbjct: 195 STTVVPTISTTTPSPTTTPTPKEKPEVGSYSVNNSNGTCLLATMGLQLNITHNKVA---- 250
Query: 943 RYFNIDPNTTQASGNCGSRKSKLLLNFQG-GFVNLTFT-KDENSYYVSGVGAYLTVSNPE 1116
NI+PNTT +G+C + + L LN +++ F K+EN +Y+ V + + N
Sbjct: 251 SVININPNTTDFTGSCQPQTALLRLNSSNIKYLDFVFAVKNENRFYLKEVNVSMYLVNGS 310
Query: 1117 KVYQGMKNAVVMFETMIGHSFKCISEQSIQLSPHLQLNTMNVQLQAFDFEDDHFGNVDEC 1296
V+ N + ++ +G S+ C EQ++ +S Q+NT ++++Q F+ + + +EC
Sbjct: 311 -VFSIANNNLSYWDAPLGSSYMCNKEQTVSVSGAFQINTFDLRVQPFNVMEGKYSTAEEC 369
Query: 1297 S--SDYTIVLPVIGAIVLG-LCAVGLIVYGIRLKRESSEYQRI 1416
S SD ++PV + LG L V I Y I ++ + YQ +
Sbjct: 370 SADSDLNFLIPVAVGVALGFLIIVVFISYMIGRRKSRTGYQSV 412
>ref|XP_534193.2| PREDICTED: similar to Lysosome-associated membrane glycoprotein 1
precursor (LAMP-1) (CD107a antigen) isoform 1 [Canis
familiaris].
Length = 413
Score = 95.5 bits (236), Expect = 1e-19
Identities = 64/220 (29%), Positives = 115/220 (52%), Gaps = 15/220 (6%)
Frame = +1
Query: 802 PGPTLAPQPSSAKTGIYQVLNGSKLCIKAEMGIELTV----QDTQSVFSPQRYFNIDPNT 969
P P+ +P P S Y V + C+ A MG++L V +D +V + +I+PN
Sbjct: 202 PHPSPSPAPESPSVHKYNVSGANGTCLLASMGLQLNVTYKKKDNTTVV---KVVSINPNK 258
Query: 970 TQASGNCGSR--------KSKLLLNFQGGFVNLTFTKDENSYYVSGVGAYLTVSNP-EKV 1122
T A G+CG++ +S LL FQ G T + +++ G+ +T+ + +
Sbjct: 259 TTAGGSCGAQLVTLELRSESVTLLAFQFGMNAST-----SRFFLQGIQLNMTLPDARDPT 313
Query: 1123 YQGMKNAVVMFETMIGHSFKCISEQSIQLSPHLQLNTMNVQLQAFDFEDDHFGNVDECSS 1302
++ N++ + IG+S+KC + + +Q++ +N + V +QAF + D FG+V+EC
Sbjct: 314 FKAGNNSLRALQATIGNSYKCNAGEHVQVTEAFSVNIIKVWVQAFQVQGDKFGSVEECQL 373
Query: 1303 D-YTIVLPV-IGAIVLGLCAVGLIVYGIRLKRESSEYQRI 1416
D ++++P+ +G + GL + LI Y I KR + YQ I
Sbjct: 374 DENSMLIPIAVGGALAGLVLIVLIAYLIGRKRSHAGYQTI 413
>ref|XP_856022.1| PREDICTED: similar to Lysosome-associated membrane glycoprotein 1
precursor (LAMP-1) (CD107a antigen) isoform 2 [Canis
familiaris].
Length = 374
Score = 95.5 bits (236), Expect = 1e-19
Identities = 64/220 (29%), Positives = 115/220 (52%), Gaps = 15/220 (6%)
Frame = +1
Query: 802 PGPTLAPQPSSAKTGIYQVLNGSKLCIKAEMGIELTV----QDTQSVFSPQRYFNIDPNT 969
P P+ +P P S Y V + C+ A MG++L V +D +V + +I+PN
Sbjct: 163 PHPSPSPAPESPSVHKYNVSGANGTCLLASMGLQLNVTYKKKDNTTVV---KVVSINPNK 219
Query: 970 TQASGNCGSR--------KSKLLLNFQGGFVNLTFTKDENSYYVSGVGAYLTVSNP-EKV 1122
T A G+CG++ +S LL FQ G T + +++ G+ +T+ + +
Sbjct: 220 TTAGGSCGAQLVTLELRSESVTLLAFQFGMNAST-----SRFFLQGIQLNMTLPDARDPT 274
Query: 1123 YQGMKNAVVMFETMIGHSFKCISEQSIQLSPHLQLNTMNVQLQAFDFEDDHFGNVDECSS 1302
++ N++ + IG+S+KC + + +Q++ +N + V +QAF + D FG+V+EC
Sbjct: 275 FKAGNNSLRALQATIGNSYKCNAGEHVQVTEAFSVNIIKVWVQAFQVQGDKFGSVEECQL 334
Query: 1303 D-YTIVLPV-IGAIVLGLCAVGLIVYGIRLKRESSEYQRI 1416
D ++++P+ +G + GL + LI Y I KR + YQ I
Sbjct: 335 DENSMLIPIAVGGALAGLVLIVLIAYLIGRKRSHAGYQTI 374
>ref|XP_849733.1| PREDICTED: similar to CD68 antigen isoform 2 [Canis familiaris].
Length = 329
Score = 86.3 bits (212), Expect = 7e-17
Identities = 82/295 (27%), Positives = 133/295 (45%), Gaps = 29/295 (9%)
Frame = +1
Query: 613 SSTLSPTAGKTT----QPSNQTTLPATLSTSPHNSTASQKXXXXXXXXXXXXXAHN---- 768
S T++PTA ++T S+ TT T S +P+ +T N
Sbjct: 35 SFTVTPTATESTGSPGTTSHSTTTAETTSHAPNTTTHQAPTTPGHRNTTIHPTTSNSTSN 94
Query: 769 ---TTQTASPATIA----PGPTLAPQPSSA------KTGIYQVLNGSKLCIKAEMGIEL- 906
TT T P T PGP P P S G Y GS+ C + + I++
Sbjct: 95 TTGTTGTGKPHTSTSYTQPGPGPRPPPPSPGPGPQDAIGDYTWTTGSQPCARLQARIQIG 154
Query: 907 TVQDTQSVFSPQRYFNIDPNTTQASGNCGSRKSKLLLNFQGGFVNLTFTKD--ENSYYVS 1080
V TQ+ ++PN+T+ G+C + LLL+F G ++ FT++ + S Y+
Sbjct: 155 VVYPTQAGGQAWGISVLNPNSTKPWGDCDGARPHLLLSFPFGQLSFGFTQEPQQGSVYLD 214
Query: 1081 GVGAYLTVSNPEK---VYQGMKNAVVMFETMIGHSFKCISEQSIQLSPHLQLNTMNVQLQ 1251
+ VS P+ + G ++ + +G SF C SI L+P L+L+ ++++LQ
Sbjct: 215 YLALQYNVSFPQAAQWTFSGQNASLRALQAPLGQSFSC-RNASILLTPALRLDLLHLKLQ 273
Query: 1252 AFDF-EDDHFGNVDECSSDYTIVLP-VIGAIVLGLCAVGLIVYGIRLKRESSEYQ 1410
A FG C S++ +LP ++G I LGL A+ L+ + I ++R YQ
Sbjct: 274 AAQLPPSGAFGPSFSCPSEHFNLLPLIVGVISLGLLALALVTFCI-IRRRPPTYQ 327
>ref|XP_546594.1| PREDICTED: similar to CD68 antigen isoform 1 [Canis familiaris].
Length = 337
Score = 80.9 bits (198), Expect = 3e-15
Identities = 82/303 (27%), Positives = 134/303 (44%), Gaps = 37/303 (12%)
Frame = +1
Query: 613 SSTLSPTAGKTT----QPSNQTTLPATLSTSPHNSTASQKXXXXXXXXXXXXXAHN---- 768
S T++PTA ++T S+ TT T S +P+ +T N
Sbjct: 35 SFTVTPTATESTGSPGTTSHSTTTAETTSHAPNTTTHQAPTTPGHRNTTIHPTTSNSTSN 94
Query: 769 ---TTQTASPATIA----PGPTLAPQPSSA------KTGIYQVLNGSKLCIKAEMGIEL- 906
TT T P T PGP P P S G Y GS+ C + + I++
Sbjct: 95 TTGTTGTGKPHTSTSYTQPGPGPRPPPPSPGPGPQDAIGDYTWTTGSQPCARLQARIQIG 154
Query: 907 TVQDTQSVFSPQRYFN--------IDPNTTQASGNCGSRKSKLLLNFQGGFVNLTFTKD- 1059
V TQ+ + ++PN+T+ G+C + LLL+F G ++ FT++
Sbjct: 155 VVYPTQAGGQVEPPVGAGAWGISVLNPNSTKPWGDCDGARPHLLLSFPFGQLSFGFTQEP 214
Query: 1060 -ENSYYVSGVGAYLTVSNPEK---VYQGMKNAVVMFETMIGHSFKCISEQSIQLSPHLQL 1227
+ S Y+ + VS P+ + G ++ + +G SF C SI L+P L+L
Sbjct: 215 QQGSVYLDYLALQYNVSFPQAAQWTFSGQNASLRALQAPLGQSFSC-RNASILLTPALRL 273
Query: 1228 NTMNVQLQAFDF-EDDHFGNVDECSSDYTIVLP-VIGAIVLGLCAVGLIVYGIRLKRESS 1401
+ ++++LQA FG C S++ +LP ++G I LGL A+ L+ + I ++R
Sbjct: 274 DLLHLKLQAAQLPPSGAFGPSFSCPSEHFNLLPLIVGVISLGLLALALVTFCI-IRRRPP 332
Query: 1402 EYQ 1410
YQ
Sbjct: 333 TYQ 335
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 55,098,706
Number of extensions: 1489140
Number of successful extensions: 6965
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 6860
Number of HSP's successfully gapped: 10
Length of query: 484
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 377
Effective length of database: 15,307,552
Effective search space: 5770947104
Effective search space used: 5770947104
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015201
(1453 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003358746.1| PREDICTED: lysosome-associated membrane glyc... 646 0.0
Alignment gi|XP_003360473.1| PREDICTED: lysosome-associated membrane glyc... 103 3e-22
Alignment gi|XP_001926493.1| PREDICTED: lysosome-associated membrane glyc... 103 3e-22
Alignment gi|NP_001011507.1| lysosome-associated membrane glycoprotein 1 ... 94 1e-19
Alignment gi|XP_003361281.1| PREDICTED: macrosialin-like [Sus scrofa]. 82 6e-16
Alignment gi|XP_003131995.1| PREDICTED: macrosialin-like [Sus scrofa]. 80 3e-15
Alignment gi|XP_003128950.1| PREDICTED: macrosialin-like isoform 1 [Sus s... 75 7e-14
Alignment gi|XP_003128951.1| PREDICTED: macrosialin-like isoform 2 [Sus s... 75 9e-14
>ref|XP_003358746.1| PREDICTED: lysosome-associated membrane glycoprotein 3-like [Sus
scrofa].
Length = 430
Score = 646 bits (1666), Expect = 0.0
Identities = 339/430 (78%), Positives = 340/430 (79%)
Frame = +1
Query: 127 MSWRXXXXXXXXXXXXXXXHYGHHMKAKVFPEITDSSSPTTAATVQATAEPSLWKPTNHT 306
MSWR HYGHHMKAKVFPEITDSSSPTTAATVQATAEPSLWKPTNHT
Sbjct: 1 MSWRLSAVLVSFVSLAVFLHYGHHMKAKVFPEITDSSSPTTAATVQATAEPSLWKPTNHT 60
Query: 307 PHKTLAAKSTDGHVTSQIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 486
PHKTLAAKSTDGHVTSQI
Sbjct: 61 PHKTLAAKSTDGHVTSQIATTVTDSETLTTHTTITTLAATSLAATNSTPSTSPTTHTLFT 120
Query: 487 XXXXXXXXHMAAPVTEAAISPSAGLSSLLXXXXXXXXXXXXRSSTLSPTAGKTTQPSNQT 666
HMAAPVTEAAISPSAGLSSLL RSSTLSPTAGKTTQPSNQT
Sbjct: 121 TLATPNTSHMAAPVTEAAISPSAGLSSLLPTIIPPAHTTGTRSSTLSPTAGKTTQPSNQT 180
Query: 667 TLPATLSTSPHNSTASQKXXXXXXXXXXXXXAHNTTQTASPATIAPGPTLAPQPSSAKTG 846
TLPATLSTSPHNSTASQK AHNTTQTASPATIAPGPTLAPQPSSAKTG
Sbjct: 181 TLPATLSTSPHNSTASQKPTHPNHTPGPTTGAHNTTQTASPATIAPGPTLAPQPSSAKTG 240
Query: 847 IYQVLNGSKLCIKAEMGIELTVQDTQSVFSPQRYFNIDPNTTQASGNCGSRKSKLLLNFQ 1026
IYQVLNGSKLCIKAEMGIELTVQDTQSVFSPQRYFNIDPNTTQASGNCGSRKSKLLLNFQ
Sbjct: 241 IYQVLNGSKLCIKAEMGIELTVQDTQSVFSPQRYFNIDPNTTQASGNCGSRKSKLLLNFQ 300
Query: 1027 GGFVNLTFTKDENSYYVSGVGAYLTVSNPEKVYQGMKNAVVMFETMIGHSFKCISEQSIQ 1206
GGFVNLTFTKDENSYYVSGVGAYLTVSNPEKVYQGMKNAVVMFETMIGHSFKC+SEQSIQ
Sbjct: 301 GGFVNLTFTKDENSYYVSGVGAYLTVSNPEKVYQGMKNAVVMFETMIGHSFKCVSEQSIQ 360
Query: 1207 LSPHLQLNTMNVQLQAFDFEDDHFGNVDECSSDYTIVLPVIGAIVLGLCAVGLIVYGIRL 1386
LSPHLQLNTMNVQLQAFDFEDDHFGNVDECSSDYTIVLPVIGAIVLGLCAVGLIVYGIRL
Sbjct: 361 LSPHLQLNTMNVQLQAFDFEDDHFGNVDECSSDYTIVLPVIGAIVLGLCAVGLIVYGIRL 420
Query: 1387 KRESSEYQRI 1416
KRESSEYQRI
Sbjct: 421 KRESSEYQRI 430
>ref|XP_003360473.1| PREDICTED: lysosome-associated membrane glycoprotein 2 [Sus scrofa].
Length = 411
Score = 103 bits (256), Expect = 3e-22
Identities = 68/221 (30%), Positives = 114/221 (51%), Gaps = 5/221 (2%)
Frame = +1
Query: 769 TTQTASPATIAPGPTLAPQPSSA-KTGIYQVLNGSKLCIKAEMGIELTVQDTQSVFSPQR 945
TT T P PT P P +TG Y V + + C+ A MG++L + +
Sbjct: 196 TTTVPVIPTSVPSPTTTPTPKEKPETGSYSVTSSNGTCLLANMGLQLNITQDKVA----S 251
Query: 946 YFNIDPNTTQASGNCGSRKSKLLLNFQG-GFVNLTFT-KDENSYYVSGVGAYLTVSNPEK 1119
NI+PNTT A+GNC S+ + L L+ +++ F K++N +Y+ V + + N
Sbjct: 252 VININPNTTNATGNCHSKTALLRLSGSNIKYLDFVFAVKNDNRFYLKEVNVSVYLVNGS- 310
Query: 1120 VYQGMKNAVVMFETMIGHSFKCISEQSIQLSPHLQLNTMNVQLQAFDFEDDHFGNVDECS 1299
V+ N + ++ +G S+ C EQ++ +S Q+NT N+++Q F + + ECS
Sbjct: 311 VFSIANNNLSYWDAPLGSSYMCNKEQTVSVSGAFQINTFNLRVQPFSVMEGKYSTAQECS 370
Query: 1300 -SDYTIVLPVI-GAIVLGLCAVGLIVYGIRLKRESSEYQRI 1416
D TI++P+I GA + GL V +I Y I ++ + YQ +
Sbjct: 371 LDDDTILIPIIVGAGLSGLIIVIVIAYLIGRRKSYAGYQTL 411
>ref|XP_001926493.1| PREDICTED: lysosome-associated membrane glycoprotein 2 isoform 1 [Sus
scrofa].
Length = 411
Score = 103 bits (256), Expect = 3e-22
Identities = 64/220 (29%), Positives = 114/220 (51%), Gaps = 5/220 (2%)
Frame = +1
Query: 769 TTQTASPATIAPGPTLAPQPSSA-KTGIYQVLNGSKLCIKAEMGIELTVQDTQSVFSPQR 945
TT T P PT P P +TG Y V + + C+ A MG++L + +
Sbjct: 196 TTTVPVIPTSVPSPTTTPTPKEKPETGSYSVTSSNGTCLLANMGLQLNITQDKVA----S 251
Query: 946 YFNIDPNTTQASGNCGSRKSKLLLNFQG-GFVNLTFT-KDENSYYVSGVGAYLTVSNPEK 1119
NI+PNTT A+GNC S+ + L L+ +++ F K++N +Y+ V + + N
Sbjct: 252 VININPNTTNATGNCHSKTALLRLSGSNIKYLDFVFAVKNDNRFYLKEVNVSVYLVNGS- 310
Query: 1120 VYQGMKNAVVMFETMIGHSFKCISEQSIQLSPHLQLNTMNVQLQAFDFEDDHFGNVDECS 1299
V+ N + ++ +G S+ C EQ++ +S Q+NT N+++Q F + + +CS
Sbjct: 311 VFSIANNNLSYWDAPLGSSYMCNKEQTVSVSGAFQINTFNLRVQPFSVMEGKYSTAQDCS 370
Query: 1300 S-DYTIVLPV-IGAIVLGLCAVGLIVYGIRLKRESSEYQR 1413
+ D ++P+ +GA + G+ + L+ Y I LKR + Y++
Sbjct: 371 ADDDNFIVPIAVGAALAGVLILVLLAYFIGLKRHHAGYEQ 410
>ref|NP_001011507.1| lysosome-associated membrane glycoprotein 1 [Sus scrofa].
Length = 413
Score = 94.4 bits (233), Expect = 1e-19
Identities = 65/215 (30%), Positives = 107/215 (49%), Gaps = 7/215 (3%)
Frame = +1
Query: 793 TIAPGPTLAPQPSSAKTGIYQVLNGSKLCIKAEMGIELTVQ-DTQSVFSPQRYFNIDPNT 969
T P PT P P+S Y V + C+ A MG++L V T+ + R NI+PN
Sbjct: 199 TAPPTPTPTPAPTSPVVSRYNVSGANGTCLLASMGLQLNVTYRTKDNTTVTRGLNINPNK 258
Query: 970 TQASGNCGSRKSKLLLNFQG-GFVNLTFTKDENSYYVSGVGAYLTVSNPEK---VYQGMK 1137
T G+C ++ L L + + L F + +S V G L ++ P+ +
Sbjct: 259 TTFGGSCSAQLVTLELQGESLRLLALQFALNTSSSRVFLQGVQLNMTLPDARDPSFSAAN 318
Query: 1138 NAVVMFETMIGHSFKCISEQSIQLSPHLQLNTMNVQLQAFDFEDDHFGNVDECSSD-YTI 1314
+++ + G+S+KC SEQ +Q++ LN V++QAF + D FG +EC D ++
Sbjct: 319 SSLRALQATAGNSYKCRSEQRLQVTEAFALNVFQVRVQAFRVDGDKFGPAEECQLDENSM 378
Query: 1315 VLPV-IGAIVLGLCAVGLIVYGIRLKRESSEYQRI 1416
++P+ +G + GL V L+ Y + KR + YQ I
Sbjct: 379 LIPIAVGGALAGLVLVVLMAYLVGRKRSHAGYQTI 413
>ref|XP_003361281.1| PREDICTED: macrosialin-like [Sus scrofa].
Length = 282
Score = 82.4 bits (202), Expect = 6e-16
Identities = 76/273 (27%), Positives = 123/273 (45%), Gaps = 11/273 (4%)
Frame = +1
Query: 625 SPTAGKTTQPSNQTTL-----PATLSTSPHNSTASQKXXXXXXXXXXXXXAHNTTQTASP 789
S T+ +TT P TT P T++ +P +T+ ++T+ P
Sbjct: 18 STTSHRTTTPRTTTTGTTSHGPTTVTHNPATTTSHGNATVHPTSSSTATSPGSSTRPPHP 77
Query: 790 ATIAPGPTLAPQPSSAKT-GIYQVLNGSKLCIKAEMGIELTV-QDTQSVFSPQRYFNIDP 963
P P+ +P P S + G Y NGS+ C++ + I++ V TQ ++P
Sbjct: 78 GPPPPPPSPSPSPGSQEAIGDYTWTNGSQPCVQLQAQIQIRVLYPTQGGGEAWGISVLNP 137
Query: 964 NTTQASGNCGSRKSKLLLNFQGGFVNLTFTKD--ENSYYVSGVGAYLTVSNPEKVYQGMK 1137
N T+A G C + L+F G + F + E++ Y++ + VS P
Sbjct: 138 NKTKALGGCEGAHPHVRLSFPYGQLTFGFKQQPQESTVYLNYMAVEYNVSFPR------- 190
Query: 1138 NAVVMFETMIGHSFKCISEQSIQLSPHLQLNTMNVQLQAFDFEDD-HFGNVDECSSDYTI 1314
A +T +G S+ C SI LS L+ ++++LQA +FG C SD TI
Sbjct: 191 -AARDLQTPVGRSYSC-RNASIILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSDQTI 248
Query: 1315 VLP-VIGAIVLGLCAVGLIVYGIRLKRESSEYQ 1410
+LP +IG I LGL + L+ + I ++R YQ
Sbjct: 249 LLPLIIGLIFLGLLILVLVTFCI-IRRRPPAYQ 280
>ref|XP_003131995.1| PREDICTED: macrosialin-like [Sus scrofa].
Length = 291
Score = 80.1 bits (196), Expect = 3e-15
Identities = 74/275 (26%), Positives = 124/275 (45%), Gaps = 13/275 (4%)
Frame = +1
Query: 625 SPTAGKTTQPSNQTTL-----PATLSTSPHNSTASQKXXXXXXXXXXXXXAHNTTQTASP 789
S T+ +TT P TT P T++ +P +T+ ++T+ P
Sbjct: 18 STTSHRTTTPRTTTTGTTSHGPTTVTHNPATTTSHGNATVHPTSSSTATSPGSSTRPPHP 77
Query: 790 ATIAPGPTLAPQPSSAKTGIYQVLNGSKLCIKAEMGIELTV-QDTQSVFSPQRYFNIDPN 966
P P+ +P A G Y NGS+ C++ + I++ V TQ ++PN
Sbjct: 78 GPPPPSPSPSPGSQEA-IGDYTWTNGSQPCVQLQAQIQIRVLYPTQGGGEAWGISVLNPN 136
Query: 967 TTQASGNCGSRKSKLLLNFQGGFVNLTFTKD--ENSYYVSGVGAYLTVSNPEKV---YQG 1131
T+A G C + L+F G + F + E++ Y++ + VS P +
Sbjct: 137 KTKALGGCEGAHPHVRLSFPYGQLTFGFKQQPQESTVYLNYMAVEYNVSFPRAAQWTFSV 196
Query: 1132 MKNAVVMFETMIGHSFKCISEQSIQLSPHLQLNTMNVQLQAFDFEDD-HFGNVDECSSDY 1308
+++ +T +G S+ C SI LS L+ ++++LQA +FG C SD
Sbjct: 197 QNSSLRDLQTPVGRSYSC-RNASIILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSDQ 255
Query: 1309 TIVLP-VIGAIVLGLCAVGLIVYGIRLKRESSEYQ 1410
TI+LP +IG I LGL + L+ + I ++R YQ
Sbjct: 256 TILLPLIIGLIFLGLLILVLVTFCI-IRRRPPAYQ 289
>ref|XP_003128950.1| PREDICTED: macrosialin-like isoform 1 [Sus scrofa].
Length = 400
Score = 75.5 bits (184), Expect = 7e-14
Identities = 78/307 (25%), Positives = 134/307 (43%), Gaps = 13/307 (4%)
Frame = +1
Query: 529 TEAAISPSAGLSSLLXXXXXXXXXXXXRSSTLSPTAGKTTQPSNQTTLPATLSTSPHNST 708
TE+ +P+A S+ ST SP +TT+ + T T T H ST
Sbjct: 96 TESTGTPTATESTGTPTATESTGTPTATESTASP---ETTRHRSTTQRTTTAGTPSHKST 152
Query: 709 ASQKXXXXXXXXXXXXXAHNT-----TQTASPATIAPGPTLAPQPSSAKT-GIYQVLNGS 870
+ +++T + T SP P PT +P P S + G Y NGS
Sbjct: 153 TATHNPATATSHTVHPTSNSTATSPESSTGSPHPGPPPPTPSPSPCSKEVKGDYTWTNGS 212
Query: 871 KLCIKAEMGIELTV-QDTQSVFSPQRYFNIDPNTTQASGNCGSRKSKLLLNFQGGFVNLT 1047
+ C+ + I++ V TQ ++PN T+ G C + LLL+F G ++
Sbjct: 213 QPCVHLQAQIQIRVLYPTQGGGKAWGISVVNPNKTKVQGGCEGAHAHLLLSFPYGQLSFG 272
Query: 1048 FTKD--ENSYYVSGVGAYLTVSNPEKV---YQGMKNAVVMFETMIGHSFKCISEQSIQLS 1212
F ++ +++ Y++ + VS P V + +++ +T +G S+ C SI LS
Sbjct: 273 FKQEPLKSTVYLNYMAIEHNVSFPGAVQWTFSVQNSSLRELQTPLGQSYSC-RNASIILS 331
Query: 1213 PHLQLNTMNVQLQAFDF-EDDHFGNVDECSSDYTIVLPVIGAIVLGLCAVGLIVYGIRLK 1389
P L+ ++++LQA FG C SD + + P+I +++L + + V ++
Sbjct: 332 PAFHLDLLSLKLQAAQLPPTGAFGPNFFCPSDKSNMRPLIISLILIGIIISMFVTFPFIR 391
Query: 1390 RESSEYQ 1410
R YQ
Sbjct: 392 RRRRIYQ 398
>ref|XP_003128951.1| PREDICTED: macrosialin-like isoform 2 [Sus scrofa].
Length = 320
Score = 75.1 bits (183), Expect = 9e-14
Identities = 71/279 (25%), Positives = 126/279 (45%), Gaps = 13/279 (4%)
Frame = +1
Query: 613 SSTLSPTAGKTTQPSNQTTLPATLSTSPHNSTASQKXXXXXXXXXXXXXAHNT-----TQ 777
++T S + +TT+ + T T T H ST + +++T +
Sbjct: 41 TATESTASPETTRHRSTTQRTTTAGTPSHKSTTATHNPATATSHTVHPTSNSTATSPESS 100
Query: 778 TASPATIAPGPTLAPQPSSAKT-GIYQVLNGSKLCIKAEMGIELTV-QDTQSVFSPQRYF 951
T SP P PT +P P S + G Y NGS+ C+ + I++ V TQ
Sbjct: 101 TGSPHPGPPPPTPSPSPCSKEVKGDYTWTNGSQPCVHLQAQIQIRVLYPTQGGGKAWGIS 160
Query: 952 NIDPNTTQASGNCGSRKSKLLLNFQGGFVNLTFTKD--ENSYYVSGVGAYLTVSNPEKV- 1122
++PN T+ G C + LLL+F G ++ F ++ +++ Y++ + VS P V
Sbjct: 161 VVNPNKTKVQGGCEGAHAHLLLSFPYGQLSFGFKQEPLKSTVYLNYMAIEHNVSFPGAVQ 220
Query: 1123 --YQGMKNAVVMFETMIGHSFKCISEQSIQLSPHLQLNTMNVQLQAFDF-EDDHFGNVDE 1293
+ +++ +T +G S+ C SI LSP L+ ++++LQA FG
Sbjct: 221 WTFSVQNSSLRELQTPLGQSYSC-RNASIILSPAFHLDLLSLKLQAAQLPPTGAFGPNFF 279
Query: 1294 CSSDYTIVLPVIGAIVLGLCAVGLIVYGIRLKRESSEYQ 1410
C SD + + P+I +++L + + V ++R YQ
Sbjct: 280 CPSDKSNMRPLIISLILIGIIISMFVTFPFIRRRRRIYQ 318
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,059,517
Number of extensions: 929498
Number of successful extensions: 4399
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 4340
Number of HSP's successfully gapped: 9
Length of query: 484
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 381
Effective length of database: 8,779,541
Effective search space: 3345005121
Effective search space used: 3345005121
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015201
(1453 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_796330.2| lysosome-associated membrane glycoprotein 3 pre... 309 3e-84
Alignment gi|NP_034815.2| lysosome-associated membrane glycoprotein 2 iso... 106 5e-23
Alignment gi|NP_001017959.1| lysosome-associated membrane glycoprotein 2 ... 105 1e-22
Alignment gi|NP_034814.2| lysosome-associated membrane glycoprotein 1 [Mu... 100 3e-21
Alignment gi|NP_033983.1| macrosialin [Mus musculus]. 84 2e-16
>ref|NP_796330.2| lysosome-associated membrane glycoprotein 3 precursor [Mus musculus].
Length = 411
Score = 309 bits (792), Expect = 3e-84
Identities = 152/260 (58%), Positives = 183/260 (70%)
Frame = +1
Query: 637 GKTTQPSNQTTLPATLSTSPHNSTASQKXXXXXXXXXXXXXAHNTTQTASPATIAPGPTL 816
G+ TQ QTTLP T T+ H ST +Q+ H T SP + P PTL
Sbjct: 152 GRATQLGGQTTLPKTFFTASHKSTTNQRPTLSTNVLGTSTPTHKDRSTTSPVPLVPRPTL 211
Query: 817 APQPSSAKTGIYQVLNGSKLCIKAEMGIELTVQDTQSVFSPQRYFNIDPNTTQASGNCGS 996
S AK G Y+VLNGS+LCIKAEMG+ L VQ+ + QRYFNIDP+ T ASG C S
Sbjct: 212 VTWSSPAKIGTYEVLNGSRLCIKAEMGLALIVQEKDLDSATQRYFNIDPSLTHASGKCDS 271
Query: 997 RKSKLLLNFQGGFVNLTFTKDENSYYVSGVGAYLTVSNPEKVYQGMKNAVVMFETMIGHS 1176
+KS L LNFQGG VN+TFTK+EN YY+S VGAYLT+SN EK YQG KN ++MFET++GHS
Sbjct: 272 QKSNLFLNFQGGSVNITFTKEENLYYISEVGAYLTISNTEKTYQGKKNTLMMFETVVGHS 331
Query: 1177 FKCISEQSIQLSPHLQLNTMNVQLQAFDFEDDHFGNVDECSSDYTIVLPVIGAIVLGLCA 1356
FKC+SEQSIQLS LQ+ TMN+ LQAFDFE D FGNV+EC SDYT+VLP++ IV+ +C
Sbjct: 332 FKCVSEQSIQLSAQLQMKTMNIHLQAFDFEGDSFGNVNECLSDYTVVLPMVAIIVVVICV 391
Query: 1357 VGLIVYGIRLKRESSEYQRI 1416
VGL VY IR + +SS YQRI
Sbjct: 392 VGLSVYKIRQRHQSSAYQRI 411
>ref|NP_034815.2| lysosome-associated membrane glycoprotein 2 isoform 2 [Mus musculus].
Length = 415
Score = 106 bits (264), Expect = 5e-23
Identities = 72/223 (32%), Positives = 120/223 (53%), Gaps = 4/223 (1%)
Frame = +1
Query: 760 AHNTTQTASPATIAPGPTLAPQPSSAKTGIYQVLNGSKLCIKAEMGIELTVQDTQSVFSP 939
A +TT T +P T P PT P P+ G Y + NG+ C+ A MG++L + + + F
Sbjct: 202 APSTTTTLTP-TSTPTPTPTPTPT---VGNYSIRNGNTTCLLATMGLQLNITEEKVPF-- 255
Query: 940 QRYFNIDPNTTQASGNCGSRKSKLLLN-FQGGFVNLTFT-KDENSYYVSGVGAYLTVSNP 1113
FNI+P TT +G+C + ++L LN Q +++ F K+E +Y+ V Y+ ++N
Sbjct: 256 --IFNINPATTNFTGSCQPQSAQLRLNNSQIKYLDFIFAVKNEKRFYLKEVNVYMYLANG 313
Query: 1114 EKVYQGMKNAVVMFETMIGHSFKCISEQSIQLSPHLQLNTMNVQLQAFDFEDDHFGNVDE 1293
KN + ++ +G S+ C EQ + +S Q+NT N+++Q F+ + E
Sbjct: 314 SAFNISNKN-LSFWDAPLGSSYMCNKEQVLSVSRAFQINTFNLKVQPFNVTKGQYSTAQE 372
Query: 1294 CS-SDYTIVLPVI-GAIVLGLCAVGLIVYGIRLKRESSEYQRI 1416
CS D TI++P+I GA + GL V +I Y I ++ + YQ +
Sbjct: 373 CSLDDDTILIPIIVGAGLSGLIIVIVIAYLIGRRKTYAGYQTL 415
>ref|NP_001017959.1| lysosome-associated membrane glycoprotein 2 isoform 1 [Mus musculus].
Length = 415
Score = 105 bits (261), Expect = 1e-22
Identities = 68/222 (30%), Positives = 120/222 (54%), Gaps = 4/222 (1%)
Frame = +1
Query: 760 AHNTTQTASPATIAPGPTLAPQPSSAKTGIYQVLNGSKLCIKAEMGIELTVQDTQSVFSP 939
A +TT T +P T P PT P P+ G Y + NG+ C+ A MG++L + + + F
Sbjct: 202 APSTTTTLTP-TSTPTPTPTPTPT---VGNYSIRNGNTTCLLATMGLQLNITEEKVPF-- 255
Query: 940 QRYFNIDPNTTQASGNCGSRKSKLLLN-FQGGFVNLTFT-KDENSYYVSGVGAYLTVSNP 1113
FNI+P TT +G+C + ++L LN Q +++ F K+E +Y+ V Y+ ++N
Sbjct: 256 --IFNINPATTNFTGSCQPQSAQLRLNNSQIKYLDFIFAVKNEKRFYLKEVNVYMYLANG 313
Query: 1114 EKVYQGMKNAVVMFETMIGHSFKCISEQSIQLSPHLQLNTMNVQLQAFDFEDDHFGNVDE 1293
KN + ++ +G S+ C EQ + +S Q+NT N+++Q F+ + +
Sbjct: 314 SAFNISNKN-LSFWDAPLGSSYMCNKEQVLSVSRAFQINTFNLKVQPFNVTKGQYSTAQD 372
Query: 1294 CSSDY-TIVLPV-IGAIVLGLCAVGLIVYGIRLKRESSEYQR 1413
CS+D ++P+ +GA + G+ + L+ Y I LKR + Y++
Sbjct: 373 CSADEDNFLVPIAVGAALGGVLILVLLAYFIGLKRHHTGYEQ 414
>ref|NP_034814.2| lysosome-associated membrane glycoprotein 1 [Mus musculus].
Length = 406
Score = 100 bits (249), Expect = 3e-21
Identities = 69/227 (30%), Positives = 117/227 (51%), Gaps = 9/227 (3%)
Frame = +1
Query: 763 HNTTQTASPATIAPGPTLAPQPSSAKTGIYQVLNGSKLCIKAEMGIELTV----QDTQSV 930
H T SP T P P+ P++ Y V + C+ A M ++L + +D ++V
Sbjct: 184 HCTQDGPSPTTGPPSPSPPLVPTNPTVSKYNVTGNNGTCLLASMALQLNITYLKKDNKTV 243
Query: 931 FSPQRYFNIDPNTTQASGNCGSRKSKLLLNFQGGFVNLTFTKDENS--YYVSGVGAYLTV 1104
R FNI PN T +SG+CG L + + + L F + +S +++ GV +T+
Sbjct: 244 ---TRAFNISPNDT-SSGSCGINLVTLKVENKNRALELQFGMNASSSLFFLQGVRLNMTL 299
Query: 1105 SNP-EKVYQGMKNAVVMFETMIGHSFKCISEQSIQLSPHLQLNTMNVQLQAFDFEDDHFG 1281
+ + +++ + +G+S+KC +E+ I +S L LN +VQ+QAF + D FG
Sbjct: 300 PDALVPTFSISNHSLKALQATVGNSYKCNTEEHIFVSKMLSLNVFSVQVQAFKVDSDRFG 359
Query: 1282 NVDECSSD-YTIVLPV-IGAIVLGLCAVGLIVYGIRLKRESSEYQRI 1416
+V+EC D +++P+ +G + GL + LI Y I KR + YQ I
Sbjct: 360 SVEECVQDGNNMLIPIAVGGALAGLVLIVLIAYLIGRKRSHAGYQTI 406
>ref|NP_033983.1| macrosialin [Mus musculus].
Length = 335
Score = 84.3 bits (207), Expect = 2e-16
Identities = 77/301 (25%), Positives = 130/301 (43%), Gaps = 38/301 (12%)
Frame = +1
Query: 613 SSTLSPTAGKTTQPSNQTTLPATLS-------------TSPHNSTASQKXXXXXXXXXXX 753
S T++PTA ++T + P T S T HN +
Sbjct: 33 SFTMTPTATESTASPTTSHRPTTTSHGNVTVHTSSGPTTVTHNPATTTSHGNATISHATV 92
Query: 754 XXAHNTTQTASPATIAPGPTLAPQP------SSAKTGIYQVLNGSKLCIKAEMGIELTV- 912
N T T SP + GP P P S G Y NGS+ C++ + I++ +
Sbjct: 93 SPTTNGTAT-SPRSSTVGPHPGPPPPSPSPRSKGALGNYTWANGSQPCVQLQAQIQIRIL 151
Query: 913 ------QDTQSVFSPQRYFNI---DPNTTQASGNCGSRKSKLLLNFQGGFVNLTFTKD-- 1059
+ + + +R + I +PN T+ G C L L+F G + F +D
Sbjct: 152 YPIQGGRKVKLKWGLKRAWGISVLNPNKTKVQGGCDGTHPHLSLSFPYGQLTFGFKQDLH 211
Query: 1060 --ENSYYVSGVGAYLTVSNPEK---VYQGMKNAVVMFETMIGHSFKCISEQSIQLSPHLQ 1224
++ Y+ + VS P+ + +++ + +G SF C SI LSP +
Sbjct: 212 QSPSTVYLDYMAVEYNVSFPQAAQWTFMAQNSSLRELQAPLGQSF-CCGNASIVLSPAVH 270
Query: 1225 LNTMNVQLQAFDFED-DHFGNVDECSSDYTIVLP-VIGAIVLGLCAVGLIVYGIRLKRES 1398
L+ ++++LQA D HFG C+ D +++LP +IG ++LGL + LI + I +R+S
Sbjct: 271 LDLLSLRLQAAQLPDKGHFGPCFSCNRDQSLLLPLIIGLVLLGLLTLVLIAFCITRRRQS 330
Query: 1399 S 1401
+
Sbjct: 331 T 331
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 46,332,337
Number of extensions: 1260698
Number of successful extensions: 6527
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6322
Number of HSP's successfully gapped: 5
Length of query: 484
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 379
Effective length of database: 12,463,779
Effective search space: 4723772241
Effective search space used: 4723772241
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015201
(1453 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055213.2| lysosome-associated membrane glycoprotein 3 [Ho... 455 e-128
Alignment gi|NP_054701.1| lysosome-associated membrane glycoprotein 2 iso... 103 3e-22
Alignment gi|NP_001116078.1| lysosome-associated membrane glycoprotein 2 ... 101 2e-21
Alignment gi|NP_002285.1| lysosome-associated membrane glycoprotein 2 iso... 100 3e-21
Alignment gi|NP_005552.3| lysosome-associated membrane glycoprotein 1 pre... 97 5e-20
Alignment gi|NP_001035148.1| macrosialin isoform B [Homo sapiens]. 95 2e-19
Alignment gi|NP_001242.2| macrosialin isoform A [Homo sapiens]. 95 2e-19
>ref|NP_055213.2| lysosome-associated membrane glycoprotein 3 [Homo sapiens].
Length = 416
Score = 455 bits (1170), Expect = e-128
Identities = 242/411 (58%), Positives = 276/411 (67%)
Frame = +1
Query: 184 HYGHHMKAKVFPEITDSSSPTTAATVQATAEPSLWKPTNHTPHKTLAAKSTDGHVTSQIX 363
H G M+AK FPE D S PT AATVQ +P + +P PH+TLAA+ DGH+T Q
Sbjct: 20 HDGSQMRAKAFPETRDYSQPTAAATVQDIKKP-VQQPAKQAPHQTLAARFMDGHITFQTA 78
Query: 364 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHMAAPVTEAAI 543
H A PVTE +
Sbjct: 79 ATVKIPTTTPATTKNTATTSPITYTLVTTQATPNNS-------------HTAPPVTEVTV 125
Query: 544 SPSAGLSSLLXXXXXXXXXXXXRSSTLSPTAGKTTQPSNQTTLPATLSTSPHNSTASQKX 723
PS SL SST+S T G TTQPSNQTTLPATLS + H ST QK
Sbjct: 126 GPSLAPYSLPPTITPPAHTTGTSSSTVSHTTGNTTQPSNQTTLPATLSIALHKSTTGQKP 185
Query: 724 XXXXXXXXXXXXAHNTTQTASPATIAPGPTLAPQPSSAKTGIYQVLNGSKLCIKAEMGIE 903
AHNTT+TA+PA+ PGPTLAPQPSS KTGIYQVLNGS+LCIKAEMGI+
Sbjct: 186 VQPTHAPGTTAAAHNTTRTAAPASTVPGPTLAPQPSSVKTGIYQVLNGSRLCIKAEMGIQ 245
Query: 904 LTVQDTQSVFSPQRYFNIDPNTTQASGNCGSRKSKLLLNFQGGFVNLTFTKDENSYYVSG 1083
L VQD +SVFSP+RYFNIDPN TQASGNCG+RKS LLLNFQGGFVNLTFTKDE SYY+S
Sbjct: 246 LIVQDKESVFSPRRYFNIDPNATQASGNCGTRKSNLLLNFQGGFVNLTFTKDEESYYISE 305
Query: 1084 VGAYLTVSNPEKVYQGMKNAVVMFETMIGHSFKCISEQSIQLSPHLQLNTMNVQLQAFDF 1263
VGAYLTVS+PE +YQG+K+AVVMF+T +GHSFKC+SEQS+QLS HLQ+ T +VQLQAFDF
Sbjct: 306 VGAYLTVSDPETIYQGIKHAVVMFQTAVGHSFKCVSEQSLQLSAHLQVKTTDVQLQAFDF 365
Query: 1264 EDDHFGNVDECSSDYTIVLPVIGAIVLGLCAVGLIVYGIRLKRESSEYQRI 1416
EDDHFGNVDECSSDYTIVLPVIGAIV+GLC +G+ VY IRL+ +SS YQRI
Sbjct: 366 EDDHFGNVDECSSDYTIVLPVIGAIVVGLCLMGMGVYKIRLRCQSSGYQRI 416
>ref|NP_054701.1| lysosome-associated membrane glycoprotein 2 isoform B precursor [Homo
sapiens].
Length = 410
Score = 103 bits (258), Expect = 3e-22
Identities = 69/222 (31%), Positives = 115/222 (51%), Gaps = 7/222 (3%)
Frame = +1
Query: 772 TQTASPA--TIAPGPTLAPQPSSA-KTGIYQVLNGSKLCIKAEMGIELTVQDTQSVFSPQ 942
T T +P T P PT P P + G Y V NG+ C+ A MG++L + +
Sbjct: 194 TSTVAPTIHTTVPSPTTTPTPKEKPEAGTYSVNNGNDTCLLATMGLQLNITQDKVA---- 249
Query: 943 RYFNIDPNTTQASGNCGSRKSKLLLNFQG-GFVNLTFT-KDENSYYVSGVGAYLTVSNPE 1116
NI+PNTT ++G+C S + L LN +++ F K+EN +Y+ V + + N
Sbjct: 250 SVININPNTTHSTGSCRSHTALLRLNSSTIKYLDFVFAVKNENRFYLKEVNISMYLVNGS 309
Query: 1117 KVYQGMKNAVVMFETMIGHSFKCISEQSIQLSPHLQLNTMNVQLQAFDFEDDHFGNVDEC 1296
V+ N + ++ +G S+ C EQ++ +S Q+NT ++++Q F+ + EC
Sbjct: 310 -VFSIANNNLSYWDAPLGSSYMCNKEQTVSVSGAFQINTFDLRVQPFNVTQGKYSTAQEC 368
Query: 1297 S-SDYTIVLPVI-GAIVLGLCAVGLIVYGIRLKRESSEYQRI 1416
S D TI++P+I GA + GL V +I Y I ++ + YQ +
Sbjct: 369 SLDDDTILIPIIVGAGLSGLIIVIVIAYVIGRRKSYAGYQTL 410
>ref|NP_001116078.1| lysosome-associated membrane glycoprotein 2 isoform C precursor [Homo
sapiens].
Length = 411
Score = 101 bits (251), Expect = 2e-21
Identities = 67/223 (30%), Positives = 112/223 (50%), Gaps = 8/223 (3%)
Frame = +1
Query: 772 TQTASPA--TIAPGPTLAPQPSSA-KTGIYQVLNGSKLCIKAEMGIELTVQDTQSVFSPQ 942
T T +P T P PT P P + G Y V NG+ C+ A MG++L + +
Sbjct: 194 TSTVAPTIHTTVPSPTTTPTPKEKPEAGTYSVNNGNDTCLLATMGLQLNITQDKVA---- 249
Query: 943 RYFNIDPNTTQASGNCGSRKSKLLLNFQG-GFVNLTFT-KDENSYYVSGVGAYLTVSNPE 1116
NI+PNTT ++G+C S + L LN +++ F K+EN +Y+ V + + N
Sbjct: 250 SVININPNTTHSTGSCRSHTALLRLNSSTIKYLDFVFAVKNENRFYLKEVNISMYLVNGS 309
Query: 1117 KVYQGMKNAVVMFETMIGHSFKCISEQSIQLSPHLQLNTMNVQLQAFDFEDDHFGNVDEC 1296
V+ N + ++ +G S+ C EQ++ +S Q+NT ++++Q F+ + +EC
Sbjct: 310 -VFSIANNNLSYWDAPLGSSYMCNKEQTVSVSGAFQINTFDLRVQPFNVTQGKYSTAEEC 368
Query: 1297 S--SDYTIVLPVIGAIVLG-LCAVGLIVYGIRLKRESSEYQRI 1416
S SD ++PV + LG L V I Y I ++ + YQ +
Sbjct: 369 SADSDLNFLIPVAVGVALGFLIIVVFISYMIGRRKSRTGYQSV 411
>ref|NP_002285.1| lysosome-associated membrane glycoprotein 2 isoform A precursor [Homo
sapiens].
Length = 410
Score = 100 bits (250), Expect = 3e-21
Identities = 64/221 (28%), Positives = 114/221 (51%), Gaps = 7/221 (3%)
Frame = +1
Query: 772 TQTASPA--TIAPGPTLAPQPSSA-KTGIYQVLNGSKLCIKAEMGIELTVQDTQSVFSPQ 942
T T +P T P PT P P + G Y V NG+ C+ A MG++L + +
Sbjct: 194 TSTVAPTIHTTVPSPTTTPTPKEKPEAGTYSVNNGNDTCLLATMGLQLNITQDKVA---- 249
Query: 943 RYFNIDPNTTQASGNCGSRKSKLLLNFQG-GFVNLTFT-KDENSYYVSGVGAYLTVSNPE 1116
NI+PNTT ++G+C S + L LN +++ F K+EN +Y+ V + + N
Sbjct: 250 SVININPNTTHSTGSCRSHTALLRLNSSTIKYLDFVFAVKNENRFYLKEVNISMYLVNGS 309
Query: 1117 KVYQGMKNAVVMFETMIGHSFKCISEQSIQLSPHLQLNTMNVQLQAFDFEDDHFGNVDEC 1296
V+ N + ++ +G S+ C EQ++ +S Q+NT ++++Q F+ + +C
Sbjct: 310 -VFSIANNNLSYWDAPLGSSYMCNKEQTVSVSGAFQINTFDLRVQPFNVTQGKYSTAQDC 368
Query: 1297 SS-DYTIVLPV-IGAIVLGLCAVGLIVYGIRLKRESSEYQR 1413
S+ D ++P+ +GA + G+ + L+ Y I LK + Y++
Sbjct: 369 SADDDNFLVPIAVGAALAGVLILVLLAYFIGLKHHHAGYEQ 409
>ref|NP_005552.3| lysosome-associated membrane glycoprotein 1 precursor [Homo sapiens].
Length = 417
Score = 96.7 bits (239), Expect = 5e-20
Identities = 62/220 (28%), Positives = 113/220 (51%), Gaps = 7/220 (3%)
Frame = +1
Query: 778 TASPATIAPGPTLAPQPSSAKTGIYQVLNGSKLCIKAEMGIELTVQ-DTQSVFSPQRYFN 954
TA PA +P P+ P P S Y V + C+ A MG++L + + + + R N
Sbjct: 200 TAPPAPPSPSPS--PVPKSPSVDKYNVSGTNGTCLLASMGLQLNLTYERKDNTTVTRLLN 257
Query: 955 IDPNTTQASGNCGSRKSKLLLNFQGGFVNLT---FTKDENSYYVSGVGAYLTVSNP-EKV 1122
I+PN T ASG+CG+ L L+ +G V L + +++ G+ + + +
Sbjct: 258 INPNKTSASGSCGAHLVTLELHSEGTTVLLFQFGMNASSSRFFLQGIQLNTILPDARDPA 317
Query: 1123 YQGMKNAVVMFETMIGHSFKCISEQSIQLSPHLQLNTMNVQLQAFDFEDDHFGNVDECSS 1302
++ ++ + +G+S+KC +E+ ++++ +N V +QAF E FG+V+EC
Sbjct: 318 FKAANGSLRALQATVGNSYKCNAEEHVRVTKAFSVNIFKVWVQAFKVEGGQFGSVEECLL 377
Query: 1303 D-YTIVLPV-IGAIVLGLCAVGLIVYGIRLKRESSEYQRI 1416
D ++++P+ +G + GL + LI Y + KR + YQ I
Sbjct: 378 DENSMLIPIAVGGALAGLVLIVLIAYLVGRKRSHAGYQTI 417
>ref|NP_001035148.1| macrosialin isoform B [Homo sapiens].
Length = 327
Score = 94.7 bits (234), Expect = 2e-19
Identities = 86/284 (30%), Positives = 136/284 (47%), Gaps = 16/284 (5%)
Frame = +1
Query: 613 SSTLSPTAGKTTQPSNQTTLPATLSTSPHN--STASQKXXXXXXXXXXXXXAHNTTQTAS 786
++T +PT TT N T P + ST+ STA+ N+T T+
Sbjct: 49 TATHNPT---TTSHGNVTVHPTSNSTATSQGPSTATHSPATTSHGNATVHPTSNSTATSP 105
Query: 787 PATIA-----PGPTLAPQPSSAKT-GIYQVLNGSKLCIKAEMGIELTVQ-DTQSVFSPQR 945
T + P P+ +P P+S +T G Y NGS+ C+ + I++ V TQ
Sbjct: 106 GFTSSAHPEPPPPSPSPSPTSKETIGDYTWTNGSQPCVHLQAQIQIRVMYTTQGGGEAWG 165
Query: 946 YFNIDPNTTQASGNCGSRKSKLLLNFQGGFVNLTFTKD--ENSYYVSGVGAYLTVSNP-- 1113
++PN T+ G+C LLL+F G ++ F +D + Y+S + VS P
Sbjct: 166 ISVLNPNKTKVQGSCEGAHPHLLLSFPYGHLSFGFMQDLQQKVVYLSYMAVEYNVSFPHA 225
Query: 1114 -EKVYQGMKNAVVMFETMIGHSFKCISEQSIQLSPHLQLNTMNVQLQAFDF-EDDHFGNV 1287
+ + ++ + +G SF C S SI LSP + L+ ++++LQA FG
Sbjct: 226 AQWTFSAQNASLRDLQAPLGQSFSC-SNSSIILSPAVHLDLLSLRLQAAQLPHTGVFGQS 284
Query: 1288 DECSSDYTIVLP-VIGAIVLGLCAVGLIVYGIRLKRESSEYQRI 1416
C SD +I+LP +IG I+LGL A+ LI + I ++R S YQ +
Sbjct: 285 FSCPSDRSILLPLIIGLILLGLLALVLIAFCI-IRRRPSAYQAL 327
>ref|NP_001242.2| macrosialin isoform A [Homo sapiens].
Length = 354
Score = 94.7 bits (234), Expect = 2e-19
Identities = 86/284 (30%), Positives = 136/284 (47%), Gaps = 16/284 (5%)
Frame = +1
Query: 613 SSTLSPTAGKTTQPSNQTTLPATLSTSPHN--STASQKXXXXXXXXXXXXXAHNTTQTAS 786
++T +PT TT N T P + ST+ STA+ N+T T+
Sbjct: 76 TATHNPT---TTSHGNVTVHPTSNSTATSQGPSTATHSPATTSHGNATVHPTSNSTATSP 132
Query: 787 PATIA-----PGPTLAPQPSSAKT-GIYQVLNGSKLCIKAEMGIELTVQ-DTQSVFSPQR 945
T + P P+ +P P+S +T G Y NGS+ C+ + I++ V TQ
Sbjct: 133 GFTSSAHPEPPPPSPSPSPTSKETIGDYTWTNGSQPCVHLQAQIQIRVMYTTQGGGEAWG 192
Query: 946 YFNIDPNTTQASGNCGSRKSKLLLNFQGGFVNLTFTKD--ENSYYVSGVGAYLTVSNP-- 1113
++PN T+ G+C LLL+F G ++ F +D + Y+S + VS P
Sbjct: 193 ISVLNPNKTKVQGSCEGAHPHLLLSFPYGHLSFGFMQDLQQKVVYLSYMAVEYNVSFPHA 252
Query: 1114 -EKVYQGMKNAVVMFETMIGHSFKCISEQSIQLSPHLQLNTMNVQLQAFDF-EDDHFGNV 1287
+ + ++ + +G SF C S SI LSP + L+ ++++LQA FG
Sbjct: 253 AQWTFSAQNASLRDLQAPLGQSFSC-SNSSIILSPAVHLDLLSLRLQAAQLPHTGVFGQS 311
Query: 1288 DECSSDYTIVLP-VIGAIVLGLCAVGLIVYGIRLKRESSEYQRI 1416
C SD +I+LP +IG I+LGL A+ LI + I ++R S YQ +
Sbjct: 312 FSCPSDRSILLPLIIGLILLGLLALVLIAFCI-IRRRPSAYQAL 354
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 54,420,118
Number of extensions: 1481836
Number of successful extensions: 7262
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 7096
Number of HSP's successfully gapped: 8
Length of query: 484
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 378
Effective length of database: 14,802,980
Effective search space: 5595526440
Effective search space used: 5595526440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015201
(1453 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 1489 0.0
>Sscrofa_Chr13
|| Length = 218635234
Score = 1489 bits (751), Expect = 0.0
Identities = 754/755 (99%)
Strand = Plus / Plus
Query: 175 gtgtttttgcattacggccatcatatgaaagcaaaagtttttccagaaatcacagactct 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130594790 gtgtttttgcattacggccatcatatgaaagcaaaagtttttccagaaatcacagactct 130594849
Query: 235 tcttcacctacaacagcagcaacagtacaggccacagcagaaccttctctctggaagcca 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130594850 tcttcacctacaacagcagcaacagtacaggccacagcagaaccttctctctggaagcca 130594909
Query: 295 actaaccacacgcctcacaaaactttagcagcaaagtcaacagatggtcatgtcacctct 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130594910 actaaccacacgcctcacaaaactttagcagcaaagtcaacagatggtcatgtcacctct 130594969
Query: 355 cagatagctaccacagtgaccgactccgagaccctcaccacacacacaaccataacaact 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130594970 cagatagctaccacagtgaccgactccgagaccctcaccacacacacaaccataacaact 130595029
Query: 415 ctcgcagcaacttccctggcagctacaaacagcaccccatctaccagcccaacaacccac 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130595030 ctcgcagcaacttccctggcagctacaaacagcaccccatctaccagcccaacaacccac 130595089
Query: 475 accctgttcacaaccctggccacacccaacacatcacacatggctgctccagtcactgag 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130595090 accctgttcacaaccctggccacacccaacacatcacacatggctgctccagtcactgag 130595149
Query: 535 gctgcaatcagccccagtgcaggtctcagttcactgctacccaccatcatcccaccaacc 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 130595150 gctgcaatcagccccagtgcaggtctcagttcactgctacccaccatcatcccaccagcc 130595209
Query: 595 cacacaactggaaccaggtcatcaaccctcagccccacagctgggaaaactactcaaccc 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130595210 cacacaactggaaccaggtcatcaaccctcagccccacagctgggaaaactactcaaccc 130595269
Query: 655 agtaaccagaccacccttccagcaactttgtccacctcaccacacaacagcaccgccagt 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130595270 agtaaccagaccacccttccagcaactttgtccacctcaccacacaacagcaccgccagt 130595329
Query: 715 cagaagcctactcaccccaaccataccccagggccaaccacaggcgcacacaataccaca 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130595330 cagaagcctactcaccccaaccataccccagggccaaccacaggcgcacacaataccaca 130595389
Query: 775 caaacggcctcccctgccaccatagctcccgggcccacccttgcacctcagccatcatca 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130595390 caaacggcctcccctgccaccatagctcccgggcccacccttgcacctcagccatcatca 130595449
Query: 835 gccaagactggaatttatcaagttctaaatggaagcaagctctgtatcaaagcagagatg 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130595450 gccaagactggaatttatcaagttctaaatggaagcaagctctgtatcaaagcagagatg 130595509
Query: 895 ggaatagagttgacagttcaagatacacagtcggt 929
|||||||||||||||||||||||||||||||||||
Sbjct: 130595510 ggaatagagttgacagttcaagatacacagtcggt 130595544
Score = 347 bits (175), Expect = 1e-92
Identities = 175/175 (100%)
Strand = Plus / Plus
Query: 1 gtgaatgagggacagagggagtgtcttctttgctaccggagcctgccccggaattagcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130583966 gtgaatgagggacagagggagtgtcttctttgctaccggagcctgccccggaattagcct 130584025
Query: 61 tctgcgctgttcagaagacccagctgttctgagctctgagtgctgcagccccttggagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130584026 tctgcgctgttcagaagacccagctgttctgagctctgagtgctgcagccccttggagag 130584085
Query: 121 acaaccatgtcctggcggctctctgcagtgctggtgtccttcgtgtccctggctg 175
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130584086 acaaccatgtcctggcggctctctgcagtgctggtgtccttcgtgtccctggctg 130584140
Score = 337 bits (170), Expect = 1e-89
Identities = 173/174 (99%)
Strand = Plus / Plus
Query: 1112 cagagaaagtttaccaaggaatgaaaaatgctgtggtgatgtttgagaccatgatcgggc 1171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130609655 cagagaaagtttaccaaggaatgaaaaatgctgtggtgatgtttgagaccatgatcgggc 130609714
Query: 1172 actccttcaagtgcataagtgaacagagtatccagctgtcaccccaccttcagctgaaca 1231
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130609715 actccttcaagtgcgtaagtgaacagagtatccagctgtcaccccaccttcagctgaaca 130609774
Query: 1232 caatgaacgtccagcttcaggcctttgatttcgaagatgaccactttggaaatg 1285
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130609775 caatgaacgtccagcttcaggcctttgatttcgaagatgaccactttggaaatg 130609828
Score = 297 bits (150), Expect = 9e-78
Identities = 150/150 (100%)
Strand = Plus / Plus
Query: 1285 gtggacgagtgttcatctgactacacaattgtgcttcctgtgattggggccattgtgctt 1344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130619570 gtggacgagtgttcatctgactacacaattgtgcttcctgtgattggggccattgtgctt 130619629
Query: 1345 ggtctctgtgctgtgggtttgattgtctatggaatccgcctaaagcgtgaatcatctgaa 1404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130619630 ggtctctgtgctgtgggtttgattgtctatggaatccgcctaaagcgtgaatcatctgaa 130619689
Query: 1405 taccagagaatctaactggtgccccacggg 1434
||||||||||||||||||||||||||||||
Sbjct: 130619690 taccagagaatctaactggtgccccacggg 130619719
Score = 260 bits (131), Expect = 2e-66
Identities = 131/131 (100%)
Strand = Plus / Plus
Query: 927 ggttttttcacctcagagatacttcaacattgaccccaacacaacccaagcctccgggaa 986
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130596425 ggttttttcacctcagagatacttcaacattgaccccaacacaacccaagcctccgggaa 130596484
Query: 987 ctgtggctcccgaaaatccaagcttctcctgaatttccagggcggatttgtgaatctcac 1046
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130596485 ctgtggctcccgaaaatccaagcttctcctgaatttccagggcggatttgtgaatctcac 130596544
Query: 1047 atttaccaagg 1057
|||||||||||
Sbjct: 130596545 atttaccaagg 130596555
Score = 119 bits (60), Expect = 4e-24
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 1055 aggatgaaaactcgtattatgtcagtggagtgggagcctatctgaccgtctcaaatccag 1114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130604104 aggatgaaaactcgtattatgtcagtggagtgggagcctatctgaccgtctcaaatccag 130604163
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 45,183,039
Number of extensions: 282
Number of successful extensions: 282
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 282
Number of HSP's successfully gapped: 6
Length of query: 1453
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1432
Effective length of database: 2,808,413,156
Effective search space: 4021647639392
Effective search space used: 4021647639392
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)