Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015204
(1051 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039898.2| hypothetical protein LOC538655 [Bos taurus]. 521 e-148
>ref|NP_001039898.2| hypothetical protein LOC538655 [Bos taurus].
Length = 823
Score = 521 bits (1342), Expect = e-148
Identities = 249/286 (87%), Positives = 257/286 (89%)
Frame = +1
Query: 1 LTLGSPQNHILQAPGEPAPPWAEMRSPHPPWTEVRGPPPGIIPENGLVRRLNTVPNLSRV 180
LTLGSPQNH+LQAPGEPAPPWAEMRSPHPPWTEV+GPPPGIIPENGLVRRLNTVPNLSR+
Sbjct: 538 LTLGSPQNHMLQAPGEPAPPWAEMRSPHPPWTEVKGPPPGIIPENGLVRRLNTVPNLSRM 597
Query: 181 IWVKTXXXXXXXXXXXXXXXXXGCKQELPEPLASGGKPRKGKRQGSQAKKSEVSPPPQSP 360
IWVKT GCKQELPEP+ASGGKPRKGKRQG+QAKKSEVSP QSP
Sbjct: 598 IWVKTPKPGNPSSEEPSIKGAPGCKQELPEPVASGGKPRKGKRQGNQAKKSEVSPASQSP 657
Query: 361 ACLEAPSAKGQTPSPKQPGKALEPPRVDSCAEAGEGSRGAQPGPGWAGSPKADKEKGSSW 540
ACLE PSAKGQTPSPKQP KA EPPRVDSCAEAGEGS+G +PGPGWA SPKADKEKG+SW
Sbjct: 658 ACLETPSAKGQTPSPKQPSKAPEPPRVDSCAEAGEGSQGTRPGPGWADSPKADKEKGNSW 717
Query: 541 RNWPGETKVRPLEQESVQPPGPARPQSLPQGKGRSRRSRNKQEKSASSLDDVFLPKDMDG 720
RNWPGE K RPLEQESVQPPGPARPQS QGKGRSRRSRNKQEKSASSLDDVFLPKDMDG
Sbjct: 718 RNWPGEAKARPLEQESVQPPGPARPQSFQQGKGRSRRSRNKQEKSASSLDDVFLPKDMDG 777
Query: 721 AEMDETDREVEYFKRFCLDSAKQTRQKVAVNWTNFSLKKTTPSTAQ 858
EMDETDREVEYFKRFCLDSAKQTRQKVAVNWTNFSLKKTTPSTAQ
Sbjct: 778 VEMDETDREVEYFKRFCLDSAKQTRQKVAVNWTNFSLKKTTPSTAQ 823
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.316 0.133 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,772,675
Number of extensions: 1725637
Number of successful extensions: 15225
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 14199
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 247
Effective length of database: 14,273,310
Effective search space: 3525507570
Effective search space used: 3525507570
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-015204
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015204
(1051 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852223.1| PREDICTED: hypothetical protein XP_847130 isofo... 470 e-132
Alignment gi|XP_536416.2| PREDICTED: hypothetical protein XP_536416 isofo... 470 e-132
Alignment gi|XP_865258.1| PREDICTED: hypothetical protein XP_860165 isofo... 117 2e-26
Alignment gi|XP_853166.1| PREDICTED: similar to Protein C4orf008 homolog ... 109 4e-24
Alignment gi|XP_544794.2| PREDICTED: hypothetical protein XP_544794 [Cani... 52 7e-07
>ref|XP_852223.1| PREDICTED: hypothetical protein XP_847130 isoform 2 [Canis
familiaris].
Length = 504
Score = 470 bits (1209), Expect = e-132
Identities = 230/286 (80%), Positives = 242/286 (84%)
Frame = +1
Query: 1 LTLGSPQNHILQAPGEPAPPWAEMRSPHPPWTEVRGPPPGIIPENGLVRRLNTVPNLSRV 180
LTLGS QNH L+ PGEPAPPW EMR HPPWTEVRGPPPGIIPENGLVRRLN VPNLSRV
Sbjct: 223 LTLGSSQNHTLRVPGEPAPPWTEMRGSHPPWTEVRGPPPGIIPENGLVRRLNAVPNLSRV 282
Query: 181 IWVKTXXXXXXXXXXXXXXXXXGCKQELPEPLASGGKPRKGKRQGSQAKKSEVSPPPQSP 360
IWVKT KQEL EP+AS GKPRKGKRQGSQ+KK+E SP P+SP
Sbjct: 283 IWVKTPKPGNPSPEEPSPKEVPSFKQELSEPVASSGKPRKGKRQGSQSKKNEASPAPRSP 342
Query: 361 ACLEAPSAKGQTPSPKQPGKALEPPRVDSCAEAGEGSRGAQPGPGWAGSPKADKEKGSSW 540
A LEAP+AKGQTPS K PGKA EP +V SCAEAGEGS QPGPGWAGSPKAD EKGSSW
Sbjct: 343 ASLEAPNAKGQTPSSKHPGKAPEPSKVGSCAEAGEGS---QPGPGWAGSPKAD-EKGSSW 398
Query: 541 RNWPGETKVRPLEQESVQPPGPARPQSLPQGKGRSRRSRNKQEKSASSLDDVFLPKDMDG 720
RNWPGE K +PLEQES+QPPGPARPQSLPQGKGRSRR+RNKQEK+A+SLDDVFLPKDMDG
Sbjct: 399 RNWPGEAKAQPLEQESMQPPGPARPQSLPQGKGRSRRNRNKQEKTAASLDDVFLPKDMDG 458
Query: 721 AEMDETDREVEYFKRFCLDSAKQTRQKVAVNWTNFSLKKTTPSTAQ 858
EMDETDREVEYFKRFCLDSAKQTRQKVAVNWTNFSLKKTTPST Q
Sbjct: 459 VEMDETDREVEYFKRFCLDSAKQTRQKVAVNWTNFSLKKTTPSTVQ 504
>ref|XP_536416.2| PREDICTED: hypothetical protein XP_536416 isoform 1 [Canis
familiaris].
Length = 584
Score = 470 bits (1209), Expect = e-132
Identities = 230/286 (80%), Positives = 242/286 (84%)
Frame = +1
Query: 1 LTLGSPQNHILQAPGEPAPPWAEMRSPHPPWTEVRGPPPGIIPENGLVRRLNTVPNLSRV 180
LTLGS QNH L+ PGEPAPPW EMR HPPWTEVRGPPPGIIPENGLVRRLN VPNLSRV
Sbjct: 303 LTLGSSQNHTLRVPGEPAPPWTEMRGSHPPWTEVRGPPPGIIPENGLVRRLNAVPNLSRV 362
Query: 181 IWVKTXXXXXXXXXXXXXXXXXGCKQELPEPLASGGKPRKGKRQGSQAKKSEVSPPPQSP 360
IWVKT KQEL EP+AS GKPRKGKRQGSQ+KK+E SP P+SP
Sbjct: 363 IWVKTPKPGNPSPEEPSPKEVPSFKQELSEPVASSGKPRKGKRQGSQSKKNEASPAPRSP 422
Query: 361 ACLEAPSAKGQTPSPKQPGKALEPPRVDSCAEAGEGSRGAQPGPGWAGSPKADKEKGSSW 540
A LEAP+AKGQTPS K PGKA EP +V SCAEAGEGS QPGPGWAGSPKAD EKGSSW
Sbjct: 423 ASLEAPNAKGQTPSSKHPGKAPEPSKVGSCAEAGEGS---QPGPGWAGSPKAD-EKGSSW 478
Query: 541 RNWPGETKVRPLEQESVQPPGPARPQSLPQGKGRSRRSRNKQEKSASSLDDVFLPKDMDG 720
RNWPGE K +PLEQES+QPPGPARPQSLPQGKGRSRR+RNKQEK+A+SLDDVFLPKDMDG
Sbjct: 479 RNWPGEAKAQPLEQESMQPPGPARPQSLPQGKGRSRRNRNKQEKTAASLDDVFLPKDMDG 538
Query: 721 AEMDETDREVEYFKRFCLDSAKQTRQKVAVNWTNFSLKKTTPSTAQ 858
EMDETDREVEYFKRFCLDSAKQTRQKVAVNWTNFSLKKTTPST Q
Sbjct: 539 VEMDETDREVEYFKRFCLDSAKQTRQKVAVNWTNFSLKKTTPSTVQ 584
>ref|XP_865258.1| PREDICTED: hypothetical protein XP_860165 isoform 3 [Canis
familiaris].
Length = 60
Score = 117 bits (293), Expect = 2e-26
Identities = 55/57 (96%), Positives = 55/57 (96%)
Frame = +1
Query: 688 DDVFLPKDMDGAEMDETDREVEYFKRFCLDSAKQTRQKVAVNWTNFSLKKTTPSTAQ 858
DDVFLPKDMDG EMDETDREVEYFKRFCLDSAKQTRQKVAVNWTNFSLKKTTPST Q
Sbjct: 4 DDVFLPKDMDGVEMDETDREVEYFKRFCLDSAKQTRQKVAVNWTNFSLKKTTPSTVQ 60
>ref|XP_853166.1| PREDICTED: similar to Protein C4orf008 homolog [Canis familiaris].
Length = 1363
Score = 109 bits (273), Expect = 4e-24
Identities = 71/188 (37%), Positives = 100/188 (53%), Gaps = 8/188 (4%)
Frame = +1
Query: 304 KRQGSQAKKSEVSPPPQSPACLEAPSAKGQTPSPKQPGKALEPPRVDSCAEAGEGSRGAQ 483
K S+ K + S PA A S + P+ + +V A E R +
Sbjct: 1180 KEGNSKQKLKQTSKAGSEPARKPADSPRASEGQPRPRPQTEPKAKVLDLASLAEQKREER 1239
Query: 484 PGPGWAGSPKADKEKGSSWRNWPGETKVRPLEQESVQPPGPARPQSL-----PQGKGRSR 648
S +K++ N E ++ P E P P L PQ KG+S+
Sbjct: 1240 R----VNSNNNNKKQ----LNHVKEERLPPAPLEPAPPSEPLPDSKLVLADSPQPKGKSK 1291
Query: 649 RSRNKQ-EKSASSLDDVFLPKD--MDGAEMDETDREVEYFKRFCLDSAKQTRQKVAVNWT 819
++R K+ ++ SS+DDVFLPKD +D +MDET+REVEYFKRFCLDSA+QTRQ++++NW+
Sbjct: 1292 KNRKKKGDRVNSSIDDVFLPKDIDLDSVDMDETEREVEYFKRFCLDSARQTRQRLSINWS 1351
Query: 820 NFSLKKTT 843
NFSLKK T
Sbjct: 1352 NFSLKKAT 1359
>ref|XP_544794.2| PREDICTED: hypothetical protein XP_544794 [Canis familiaris].
Length = 1205
Score = 52.4 bits (124), Expect = 7e-07
Identities = 59/213 (27%), Positives = 76/213 (35%), Gaps = 11/213 (5%)
Frame = +1
Query: 43 GEPAPPWAEMRS----PHPPWTEVRGPPPGIIPENGLVRRLNTVPNLSRVIWVK------ 192
G PP + + P PPWT PP E+ + R P L+R W +
Sbjct: 319 GSSVPPGSRSKGRGSGPCPPWTGAPAHPPAAALES--ITRTAVAPALARRAWREWKCLPE 376
Query: 193 -TXXXXXXXXXXXXXXXXXGCKQELPEPLASGGKPRKGKRQGSQAKKSEVSPPPQSPACL 369
G ++ PEP+A P + +R P SP
Sbjct: 377 TQEDRAARAGPRGFSGGRAGFRRLHPEPVARVPAPSQHRRN---------PWAPASPLGR 427
Query: 370 EAPSAKGQTPSPKQPGKALEPPRVDSCAEAGEGSRGAQPGPGWAGSPKADKEKGSSWRNW 549
E P G+ P PG+ LE R G RG G GW G P AD G+
Sbjct: 428 EEPGGLGR-PGAGDPGRELELKR---------GRRGRPGGGGWGGLP-ADGASGA----- 471
Query: 550 PGETKVRPLEQESVQPPGPARPQSLPQGKGRSR 648
PG T+ R E +QP GPA G G +R
Sbjct: 472 PGRTRRR---DEHLQPAGPAVGGQHDPGPGTTR 501
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.316 0.133 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 48,748,700
Number of extensions: 1778834
Number of successful extensions: 15512
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 14605
Number of HSP's successfully gapped: 5
Length of query: 350
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 246
Effective length of database: 15,407,560
Effective search space: 3790259760
Effective search space used: 3790259760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015204
(1051 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230779.1| hypothetical protein LOC100511495 [Sus scrof... 558 e-159
Alignment gi|XP_003357536.1| PREDICTED: protein piccolo-like [Sus scrofa]. 50 2e-06
>ref|NP_001230779.1| hypothetical protein LOC100511495 [Sus scrofa].
Length = 903
Score = 558 bits (1437), Expect = e-159
Identities = 269/286 (94%), Positives = 269/286 (94%)
Frame = +1
Query: 1 LTLGSPQNHILQAPGEPAPPWAEMRSPHPPWTEVRGPPPGIIPENGLVRRLNTVPNLSRV 180
LTLGSPQNHILQAPGEPAPPWAEMRSPHPPWTEVRGPPPGIIPENGLVRRLNTVPNLSRV
Sbjct: 618 LTLGSPQNHILQAPGEPAPPWAEMRSPHPPWTEVRGPPPGIIPENGLVRRLNTVPNLSRV 677
Query: 181 IWVKTXXXXXXXXXXXXXXXXXGCKQELPEPLASGGKPRKGKRQGSQAKKSEVSPPPQSP 360
IWVKT GCKQELPEPLASGGKPRKGKRQGSQAKKSEVSPPPQSP
Sbjct: 678 IWVKTPKPGNPSSEEPSPQEVPGCKQELPEPLASGGKPRKGKRQGSQAKKSEVSPPPQSP 737
Query: 361 ACLEAPSAKGQTPSPKQPGKALEPPRVDSCAEAGEGSRGAQPGPGWAGSPKADKEKGSSW 540
ACLEAPSAKGQTPSPKQPGKALEPPRVDSCAEAGEGSRGAQPGPGWAGSPKADKEKGSSW
Sbjct: 738 ACLEAPSAKGQTPSPKQPGKALEPPRVDSCAEAGEGSRGAQPGPGWAGSPKADKEKGSSW 797
Query: 541 RNWPGETKVRPLEQESVQPPGPARPQSLPQGKGRSRRSRNKQEKSASSLDDVFLPKDMDG 720
RNWPGETKVRPLEQESVQPPGPARPQSLPQGKGRSRRSRNKQEKSASSLDDVFLPKDMDG
Sbjct: 798 RNWPGETKVRPLEQESVQPPGPARPQSLPQGKGRSRRSRNKQEKSASSLDDVFLPKDMDG 857
Query: 721 AEMDETDREVEYFKRFCLDSAKQTRQKVAVNWTNFSLKKTTPSTAQ 858
AEMDETDREVEYFKRFCLDSAKQTRQKVAVNWTNFSLKKTTPSTAQ
Sbjct: 858 AEMDETDREVEYFKRFCLDSAKQTRQKVAVNWTNFSLKKTTPSTAQ 903
>ref|XP_003357536.1| PREDICTED: protein piccolo-like [Sus scrofa].
Length = 1197
Score = 50.4 bits (119), Expect = 2e-06
Identities = 47/145 (32%), Positives = 59/145 (40%), Gaps = 6/145 (4%)
Frame = +1
Query: 265 PEPLASGGKPRKGKRQGSQAKKSEVSPPPQSPACLEAPSAK-GQT-PSPKQPGKALEPPR 438
P P + P K Q K PPPQ P + P + G T P P+QPG A PP+
Sbjct: 445 PGPQSPAQPPGPAKTQPGPTK-----PPPQQPRPAKPPPQQPGSTKPPPQQPGPAKPPPQ 499
Query: 439 VDSCAEAGEGSRGAQPGPGWAGSPKADKEKGSSWRNWPGETKVRPL----EQESVQPPGP 606
QPGP SP+ K + PG TK P E+ Q PG
Sbjct: 500 --------------QPGPAKPASPQPGPAKPPPQQ--PGSTKPPPQQPGPEKPPSQQPGS 543
Query: 607 ARPQSLPQGKGRSRRSRNKQEKSAS 681
A+P S Q G ++ S + EK S
Sbjct: 544 AKPPS--QQPGTAKPSAQQPEKPVS 566
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.316 0.133 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,327,973
Number of extensions: 1124892
Number of successful extensions: 9834
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 9137
Number of HSP's successfully gapped: 2
Length of query: 350
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 250
Effective length of database: 8,854,232
Effective search space: 2213558000
Effective search space used: 2213558000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015204
(1051 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001156353.1| hypothetical protein LOC212483 [Mus musculus]. 425 e-119
Alignment gi|NP_663357.2| hypothetical protein LOC212483 [Mus musculus]. 425 e-119
Alignment gi|NP_001230052.1| hypothetical protein LOC231128 [Mus musculus]. 106 3e-23
Alignment gi|XP_003084700.1| PREDICTED: hypothetical protein LOC100502592... 42 3e-07
Alignment gi|NP_941071.1| proline-rich protein BstNI subfamily 1 [Mus mus... 45 9e-07
>ref|NP_001156353.1| hypothetical protein LOC212483 [Mus musculus].
Length = 778
Score = 425 bits (1093), Expect = e-119
Identities = 219/287 (76%), Positives = 229/287 (79%), Gaps = 1/287 (0%)
Frame = +1
Query: 1 LTLGSPQNHILQAPGEPAPPWAEMRSPHPP-WTEVRGPPPGIIPENGLVRRLNTVPNLSR 177
LTLGSPQ+H LQAP EP PPWAE R PHPP WTEVRGPPPGI PENGLVRRLNTVPNLSR
Sbjct: 495 LTLGSPQSHTLQAPSEPVPPWAERRDPHPPPWTEVRGPPPGI-PENGLVRRLNTVPNLSR 553
Query: 178 VIWVKTXXXXXXXXXXXXXXXXXGCKQELPEPLASGGKPRKGKRQGSQAKKSEVSPPPQS 357
VIWVKT CKQEL EP+A+GGKP+K KRQGSQAKK+ SP P S
Sbjct: 554 VIWVKTPKPGNPSSEESSKEVP-SCKQELSEPVATGGKPKKSKRQGSQAKKTLASPAPWS 612
Query: 358 PACLEAPSAKGQTPSPKQPGKALEPPRVDSCAEAGEGSRGAQPGPGWAGSPKADKEKGSS 537
PA LEA AK Q SPKQP K EP +V S AE GEGS G++PGP A SPK DK KGSS
Sbjct: 613 PANLEASGAKSQVSSPKQPSKGSEPAKVGSGAEPGEGSPGSRPGPIQADSPKTDK-KGSS 671
Query: 538 WRNWPGETKVRPLEQESVQPPGPARPQSLPQGKGRSRRSRNKQEKSASSLDDVFLPKDMD 717
W+NWPG K R LEQES Q PGPARPQSL QGKGRSRRSRNKQEKSASSLDDVFLPKD+D
Sbjct: 672 WQNWPGGAKARTLEQESEQTPGPARPQSLSQGKGRSRRSRNKQEKSASSLDDVFLPKDLD 731
Query: 718 GAEMDETDREVEYFKRFCLDSAKQTRQKVAVNWTNFSLKKTTPSTAQ 858
G EMDETDREVEYFKRFCLDSAKQTRQKVAVNWTNFSLKKTTPSTAQ
Sbjct: 732 GVEMDETDREVEYFKRFCLDSAKQTRQKVAVNWTNFSLKKTTPSTAQ 778
>ref|NP_663357.2| hypothetical protein LOC212483 [Mus musculus].
Length = 778
Score = 425 bits (1093), Expect = e-119
Identities = 219/287 (76%), Positives = 229/287 (79%), Gaps = 1/287 (0%)
Frame = +1
Query: 1 LTLGSPQNHILQAPGEPAPPWAEMRSPHPP-WTEVRGPPPGIIPENGLVRRLNTVPNLSR 177
LTLGSPQ+H LQAP EP PPWAE R PHPP WTEVRGPPPGI PENGLVRRLNTVPNLSR
Sbjct: 495 LTLGSPQSHTLQAPSEPVPPWAERRDPHPPPWTEVRGPPPGI-PENGLVRRLNTVPNLSR 553
Query: 178 VIWVKTXXXXXXXXXXXXXXXXXGCKQELPEPLASGGKPRKGKRQGSQAKKSEVSPPPQS 357
VIWVKT CKQEL EP+A+GGKP+K KRQGSQAKK+ SP P S
Sbjct: 554 VIWVKTPKPGNPSSEESSKEVP-SCKQELSEPVATGGKPKKSKRQGSQAKKTLASPAPWS 612
Query: 358 PACLEAPSAKGQTPSPKQPGKALEPPRVDSCAEAGEGSRGAQPGPGWAGSPKADKEKGSS 537
PA LEA AK Q SPKQP K EP +V S AE GEGS G++PGP A SPK DK KGSS
Sbjct: 613 PANLEASGAKSQVSSPKQPSKGSEPAKVGSGAEPGEGSPGSRPGPIQADSPKTDK-KGSS 671
Query: 538 WRNWPGETKVRPLEQESVQPPGPARPQSLPQGKGRSRRSRNKQEKSASSLDDVFLPKDMD 717
W+NWPG K R LEQES Q PGPARPQSL QGKGRSRRSRNKQEKSASSLDDVFLPKD+D
Sbjct: 672 WQNWPGGAKARTLEQESEQTPGPARPQSLSQGKGRSRRSRNKQEKSASSLDDVFLPKDLD 731
Query: 718 GAEMDETDREVEYFKRFCLDSAKQTRQKVAVNWTNFSLKKTTPSTAQ 858
G EMDETDREVEYFKRFCLDSAKQTRQKVAVNWTNFSLKKTTPSTAQ
Sbjct: 732 GVEMDETDREVEYFKRFCLDSAKQTRQKVAVNWTNFSLKKTTPSTAQ 778
>ref|NP_001230052.1| hypothetical protein LOC231128 [Mus musculus].
Length = 1518
Score = 106 bits (265), Expect = 3e-23
Identities = 53/105 (50%), Positives = 77/105 (73%), Gaps = 11/105 (10%)
Frame = +1
Query: 562 KVRPLEQESVQPPGPARP--------QSLPQGKGRSRRSRNKQ-EKSASSLDDVFLPKD- 711
K L + +PP P++ S PQ KG++++++ K+ ++++SSLDDVFLPKD
Sbjct: 1410 KEEKLSTVTPEPPSPSQLLQNGRLILASSPQPKGKNKKNKKKKGDRTSSSLDDVFLPKDI 1469
Query: 712 -MDGAEMDETDREVEYFKRFCLDSAKQTRQKVAVNWTNFSLKKTT 843
+D +MDET+REVEYFKRFCLDSA+Q RQ++++NW+NFSLKK T
Sbjct: 1470 DLDSVDMDETEREVEYFKRFCLDSARQNRQRLSINWSNFSLKKAT 1514
>ref|XP_003084700.1| PREDICTED: hypothetical protein LOC100502592 [Mus musculus].
Length = 298
Score = 42.0 bits (97), Expect(2) = 3e-07
Identities = 37/137 (27%), Positives = 49/137 (35%)
Frame = +1
Query: 247 GCKQELPEPLASGGKPRKGKRQGSQAKKSEVSPPPQSPACLEAPSAKGQTPSPKQPGKAL 426
G +Q P+P G P +G QG ++ PPPQ P Q P Q G
Sbjct: 157 GPQQRPPQPGNQQGPPPQGGPQGPPRPGNQQGPPPQGGP-QRPPQPGNQQGRPPQGGPQE 215
Query: 427 EPPRVDSCAEAGEGSRGAQPGPGWAGSPKADKEKGSSWRNWPGETKVRPLEQESVQPPGP 606
PP+ G Q GP G P+ + PG + P ++ PP P
Sbjct: 216 RPPQP-----------GNQQGPPPQGGPQQRPPQ-------PGNQQGPPQQEGPQGPPRP 257
Query: 607 ARPQSLPQGKGRSRRSR 657
Q P G R S+
Sbjct: 258 GNQQGPPPQGGPQRPSQ 274
Score = 31.2 bits (69), Expect(2) = 3e-07
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
Frame = +3
Query: 9 GLPSEPYITSSRRASPTMGRNEKSPPTMDRGEGPPSRYHPREWASEETQHRAQPVPGDLG 188
G P P P G ++ PP + +GPP + P++ + + P G G
Sbjct: 81 GPPQHPPHPGHHHGPPPQGSPQQRPPQPGKQQGPPPQGGPQQRPPQPGNQQGPPPQG--G 138
Query: 189 QDTQARQP-*L*GAKPTGGPR 248
+ QP G P GGP+
Sbjct: 139 PQQRPPQPGNQQGPPPQGGPQ 159
>ref|NP_941071.1| proline-rich protein BstNI subfamily 1 [Mus musculus].
Length = 504
Score = 45.4 bits (106), Expect(2) = 9e-07
Identities = 42/147 (28%), Positives = 54/147 (36%), Gaps = 13/147 (8%)
Frame = +1
Query: 247 GCKQELPEPLASGGKPRKGKRQGSQAKKSEVSPPPQ--------SPACLEAPSAKGQTPS 402
G +Q P+P G P +G QG ++ PPPQ P + P KG
Sbjct: 308 GLQQRPPQPGNPQGPPPQGGPQGPPRPGNQQGPPPQGGPQQRPPQPGNQQGPPPKGGPQR 367
Query: 403 PKQPGKALEPPRVDSCAEAGEGSRGAQPGPGWAGS-----PKADKEKGSSWRNWPGETKV 567
P QPG PP G G Q GP G P+ +G S + P +
Sbjct: 368 PPQPGYQQGPP--PQGGPQGPPMSGNQQGPPPQGGLQQRPPQPGNPQGPSPQGGP-QGPP 424
Query: 568 RPLEQESVQPPGPARPQSLPQGKGRSR 648
RP Q+ PP PQ P G +
Sbjct: 425 RPGNQQG--PPPQGGPQQRPPQPGNQQ 449
Score = 42.7 bits (99), Expect(2) = 9e-07
Identities = 37/143 (25%), Positives = 50/143 (34%), Gaps = 8/143 (5%)
Frame = +1
Query: 247 GCKQELPEPLASGGKPRKGKRQGSQAKKSEVSPPPQS--------PACLEAPSAKGQTPS 402
G Q P+P G P +G QG ++ PPPQ P + P +G
Sbjct: 271 GGPQRPPQPGYQQGPPPQGGPQGPPMPGNQQGPPPQGGLQQRPPQPGNPQGPPPQGGPQG 330
Query: 403 PKQPGKALEPPRVDSCAEAGEGSRGAQPGPGWAGSPKADKEKGSSWRNWPGETKVRPLEQ 582
P +PG PP + G R QPG PK ++ PG + P +
Sbjct: 331 PPRPGNQQGPP-----PQGGPQQRPPQPGNQQGPPPKGGPQRPPQ----PGYQQGPPPQG 381
Query: 583 ESVQPPGPARPQSLPQGKGRSRR 651
PP Q P G +R
Sbjct: 382 GPQGPPMSGNQQGPPPQGGLQQR 404
Score = 28.5 bits (62), Expect(2) = 9e-07
Identities = 18/80 (22%), Positives = 32/80 (40%)
Frame = +3
Query: 9 GLPSEPYITSSRRASPTMGRNEKSPPTMDRGEGPPSRYHPREWASEETQHRAQPVPGDLG 188
G P +++ P G ++ PP +GPP + P++ + + P+ G G
Sbjct: 160 GPQQRPPQPGNQQGPPPQGGPQQRPPQPGNQQGPPPQGGPQQRPPQPGNQQGPPLHG--G 217
Query: 189 QDTQARQP*L*GAKPTGGPR 248
+ G P GGP+
Sbjct: 218 PQRPPQPGNQQGPPPQGGPQ 237
Score = 25.8 bits (55), Expect(2) = 9e-07
Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
Frame = +3
Query: 9 GLPSEPYITSSRRASPTMGRNEKSPPTMDRGEGPPSRYHPREWASEETQHRAQPVPGDLG 188
G P P +++ P G ++ PP +GP HP+ + Q P G
Sbjct: 216 GGPQRPPQPGNQQGPPPQGGPQQRPPQPGNQQGP----HPQGGLQGPPRPGNQQGPPPKG 271
Query: 189 QDTQARQP*L-*GAKPTGGPR 248
+ QP G P GGP+
Sbjct: 272 GPQRPPQPGYQQGPPPQGGPQ 292
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.316 0.133 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,639,490
Number of extensions: 1385241
Number of successful extensions: 11337
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 10502
Number of HSP's successfully gapped: 13
Length of query: 350
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 248
Effective length of database: 12,553,887
Effective search space: 3113363976
Effective search space used: 3113363976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015204
(1051 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001177875.1| family with sequence similarity 193, member ... 499 e-141
Alignment gi|NP_003695.3| hypothetical protein LOC8603 [Homo sapiens]. 102 8e-22
Alignment gi|NP_006239.3| basic salivary proline-rich protein 2 [Homo sap... 52 1e-06
Alignment gi|NP_002714.2| basic salivary proline-rich protein 4 precursor... 52 1e-06
Alignment gi|NP_065746.3| RNA exonuclease 1 homolog [Homo sapiens]. 50 3e-06
>ref|NP_001177875.1| family with sequence similarity 193, member B [Homo sapiens].
Length = 822
Score = 499 bits (1285), Expect = e-141
Identities = 238/286 (83%), Positives = 248/286 (86%)
Frame = +1
Query: 1 LTLGSPQNHILQAPGEPAPPWAEMRSPHPPWTEVRGPPPGIIPENGLVRRLNTVPNLSRV 180
LTLGSPQNH LQAPGEPAPPWAEMR PHPPWTEVRGPPPGI+PENGLVRRLNTVPNLSRV
Sbjct: 537 LTLGSPQNHTLQAPGEPAPPWAEMRGPHPPWTEVRGPPPGIVPENGLVRRLNTVPNLSRV 596
Query: 181 IWVKTXXXXXXXXXXXXXXXXXGCKQELPEPLASGGKPRKGKRQGSQAKKSEVSPPPQSP 360
IWVKT CKQELPEP++SGGKP+KGKRQGSQAKKSE SP P+ P
Sbjct: 597 IWVKTPKPGYPSSEEPSSKEVPSCKQELPEPVSSGGKPQKGKRQGSQAKKSEASPAPRPP 656
Query: 361 ACLEAPSAKGQTPSPKQPGKALEPPRVDSCAEAGEGSRGAQPGPGWAGSPKADKEKGSSW 540
A LE PSAKGQ PKQPG+ LE P+V SCAEAGEGSRG++PGPGWAGSPK +KEKGSSW
Sbjct: 657 ASLEVPSAKGQVAGPKQPGRVLELPKVGSCAEAGEGSRGSRPGPGWAGSPKTEKEKGSSW 716
Query: 541 RNWPGETKVRPLEQESVQPPGPARPQSLPQGKGRSRRSRNKQEKSASSLDDVFLPKDMDG 720
RNWPGE K RP EQESVQP GPARPQSLPQGKGRSRRSRNKQEK ASSLDDVFLPKDMDG
Sbjct: 717 RNWPGEAKARPQEQESVQPSGPARPQSLPQGKGRSRRSRNKQEKPASSLDDVFLPKDMDG 776
Query: 721 AEMDETDREVEYFKRFCLDSAKQTRQKVAVNWTNFSLKKTTPSTAQ 858
EMDETDREVEYFKRFCLDSAKQTRQKVAVNWTNFSLKKTTPSTAQ
Sbjct: 777 VEMDETDREVEYFKRFCLDSAKQTRQKVAVNWTNFSLKKTTPSTAQ 822
>ref|NP_003695.3| hypothetical protein LOC8603 [Homo sapiens].
Length = 1224
Score = 102 bits (253), Expect = 8e-22
Identities = 46/76 (60%), Positives = 66/76 (86%), Gaps = 3/76 (3%)
Frame = +1
Query: 625 PQGKGRSRRSRNKQ-EKSASSLDDVFLPKD--MDGAEMDETDREVEYFKRFCLDSAKQTR 795
PQ KG++++++ K+ ++ +S+DDVFLPKD +D +MDET+REVEYFKRFCLDSA+QTR
Sbjct: 1145 PQPKGKNKKNKKKKGDRVNNSIDDVFLPKDIDLDSVDMDETEREVEYFKRFCLDSARQTR 1204
Query: 796 QKVAVNWTNFSLKKTT 843
Q++++NW+NFSLKK T
Sbjct: 1205 QRLSINWSNFSLKKAT 1220
>ref|NP_006239.3| basic salivary proline-rich protein 2 [Homo sapiens].
Length = 416
Score = 51.6 bits (122), Expect = 1e-06
Identities = 58/204 (28%), Positives = 70/204 (34%), Gaps = 6/204 (2%)
Frame = +1
Query: 40 PGEPAPPWAEMRSPHPPWTEVRGPPP--GIIPENGLVRRLNTVPNLSRVIWVKTXXXXXX 213
P P P + RSP P + +GPPP G P+
Sbjct: 98 PQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQG----------------------PPPP 135
Query: 214 XXXXXXXXXXXGCKQELPEPLASGGKPRKGKRQGSQAKKSEVSPP--PQSPACLEAPSAK 387
G K + P P GKP+ QG +S SPP PQ P P
Sbjct: 136 PGKPQGPPPQGGNKPQGPPP---PGKPQGPPPQGDNKSRSSRSPPGKPQGP-----PPQG 187
Query: 388 GQTPS--PKQPGKALEPPRVDSCAEAGEGSRGAQPGPGWAGSPKADKEKGSSWRNWPGET 561
G P P PGK PP + G +G P G P K S R+ PG+
Sbjct: 188 GNQPQGPPPPPGKPQGPP-----PQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKP 242
Query: 562 KVRPLEQESVQPPGPARPQSLPQG 633
+ P Q QP GP P PQG
Sbjct: 243 QGPP-PQGGNQPQGPPPPPGKPQG 265
Score = 49.7 bits (117), Expect = 5e-06
Identities = 61/220 (27%), Positives = 74/220 (33%), Gaps = 12/220 (5%)
Frame = +1
Query: 10 GSPQNHILQAPGEPAPPWAEMRSPHPPWTEVRGPPPGIIPENGLVRRLNTVPNLSRVIWV 189
G P Q G P PP P + +GPPP P+ G + + SR
Sbjct: 120 GPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQ-GPPPQGDNKSRSSRSPPG 178
Query: 190 KTXXXXXXXXXXXXXXXXXGCKQELPEPLASG--------GKPRKGKRQGSQAKKSEVSP 345
K K + P P GKP+ QG +S SP
Sbjct: 179 KPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSP 238
Query: 346 P--PQSPACLEAPSAKGQTPS--PKQPGKALEPPRVDSCAEAGEGSRGAQPGPGWAGSPK 513
P PQ P P G P P PGK PP + G +G P G P
Sbjct: 239 PGKPQGP-----PPQGGNQPQGPPPPPGKPQGPP-----PQGGNKPQGPPPPGKPQGPPP 288
Query: 514 ADKEKGSSWRNWPGETKVRPLEQESVQPPGPARPQSLPQG 633
K S R+ PG+ + P Q QP GP P PQG
Sbjct: 289 QGGSKSRSSRSPPGKPQGPP-PQGGNQPQGPPPPPGKPQG 327
>ref|NP_002714.2| basic salivary proline-rich protein 4 precursor [Homo sapiens].
Length = 247
Score = 51.6 bits (122), Expect = 1e-06
Identities = 43/120 (35%), Positives = 56/120 (46%), Gaps = 4/120 (3%)
Frame = +1
Query: 286 GKPRKGKRQGSQAKKSEVSPPPQSPACLEAPSAKGQTPS---PKQPGKALEPPRVDSCAE 456
GKP + QG +S+ +PPP P E P +G S P PGK PP +
Sbjct: 97 GKPERPPPQGGN--QSQGTPPP--PGKPERPPPQGGNQSHRPPPPPGKPERPP-----PQ 147
Query: 457 AGEGSRGAQPGPGWA-GSPKADKEKGSSWRNWPGETKVRPLEQESVQPPGPARPQSLPQG 633
G S+G P PG G P + K S R+ PG+ + P +QE +P GP P PQG
Sbjct: 148 GGNQSQGPPPHPGKPEGPPPQEGNKSRSARSPPGKPQGPP-QQEGNKPQGPP-PPGKPQG 205
>ref|NP_065746.3| RNA exonuclease 1 homolog [Homo sapiens].
Length = 1221
Score = 50.4 bits (119), Expect = 3e-06
Identities = 42/142 (29%), Positives = 58/142 (40%), Gaps = 5/142 (3%)
Frame = +1
Query: 283 GGKPRKGKRQGSQAKKSEVSPPPQSPACLEAPSAKGQTPSPKQPGKALEPPRVDSCA-EA 459
GG P++GK KK + PP +P+C + K +T K G+ +E PR D +A
Sbjct: 368 GGCPKEGK-----PKKKKTGAPP-APSCKDGAQGKDKTKD-KGRGRPVEKPRADKKGPQA 420
Query: 460 GEGSRGAQPGPGWAGSPKADKEKGSSWRNWPGETKVRPLEQESVQPP----GPARPQSLP 627
R A+ G P + +S + P RP P GP RP LP
Sbjct: 421 SSPRRKAERPEGTKKKPSSATPVATSGKGRPDRPARRPSPTSGDSRPAAGRGPPRPLQLP 480
Query: 628 QGKGRSRRSRNKQEKSASSLDD 693
K S E+ A SLD+
Sbjct: 481 DRKSTKAPSGKLVERKARSLDE 502
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.316 0.133 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,530,070
Number of extensions: 1714669
Number of successful extensions: 14677
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 13637
Number of HSP's successfully gapped: 7
Length of query: 350
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 247
Effective length of database: 14,901,872
Effective search space: 3680762384
Effective search space used: 3680762384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015204
(1051 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 1322 0.0
>Sscrofa_Chr02
|| Length = 162569375
Score = 1322 bits (667), Expect = 0.0
Identities = 681/688 (98%)
Strand = Plus / Minus
Query: 1 ttgactttgggctcccctcagaaccatatattacaagctccaggcgagccagccccacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81861454 ttgactttgggctcccctcagaaccatatattacaagctccaggcgagccagccccacca 81861395
Query: 61 tgggcagaaatgagaagtccccacccaccatggacagaggtgaggggcccccctcccggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81861394 tgggcagaaatgagaagtccccacccaccatggacagaggtgaggggcccccctcccggt 81861335
Query: 121 atcatccccgagaatgggctagtgaggagactcaacaccgtgcccaacctgtcccgggtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81861334 atcatccccgagaatgggctagtgaggagactcaacaccgtgcccaacctgtcccgggtg 81861275
Query: 181 atctgggtcaagacacccaagccaggcaaccctagctctgaggagccaagcccacaggag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81861274 atctgggtcaagacacccaagccaggcaaccctagctctgaggagccaagcccacaggag 81861215
Query: 241 gtccccggctgcaagcaggagttgcctgagcctttggcctcaggtgggaagccgcggaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81861214 gtccccggctgcaagcaggagttgcctgagcctttggcctcaggtgggaagccgcggaag 81861155
Query: 301 ggcaagagacagggcagtcaggccaagaagagcgaggtgagcccannnnnnnagtcccca 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 81861154 ggcaagagacagggcagtcaggccaagaagagcgaggtgagcccacccccccagtcccca 81861095
Query: 361 gcctgccttgaggctcccagtgccaagggccagacccccagccccaagcagccaggcaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81861094 gcctgccttgaggctcccagtgccaagggccagacccccagccccaagcagccaggcaag 81861035
Query: 421 gccctggagcctcccagagtggacagctgtgccgaggctggagaggggagccggggggcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81861034 gccctggagcctcccagagtggacagctgtgccgaggctggagaggggagccggggggcc 81860975
Query: 481 caaccaggaccaggctgggctggcagccccaaagctgacaaggagaagggcagctcctgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81860974 caaccaggaccaggctgggctggcagccccaaagctgacaaggagaagggcagctcctgg 81860915
Query: 541 cgaaactggccaggtgagacaaaggtacggcctctggagcaggagtctgtgcagccccca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81860914 cgaaactggccaggtgagacaaaggtacggcctctggagcaggagtctgtgcagccccca 81860855
Query: 601 ggcccagcaaggccacagagcttgccacagggcaagggccgcagccgccggagccgcaac 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81860854 ggcccagcaaggccacagagcttgccacagggcaagggccgcagccgccggagccgcaac 81860795
Query: 661 aagcaggagaagtcagcctcctccttgg 688
||||||||||||||||||||||||||||
Sbjct: 81860794 aagcaggagaagtcagcctcctccttgg 81860767
Score = 198 bits (100), Expect = 4e-48
Identities = 100/100 (100%)
Strand = Plus / Minus
Query: 763 aggttctgtttggattctgcaaagcaaacacgtcagaaagttgccgtgaactggaccaac 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81859440 aggttctgtttggattctgcaaagcaaacacgtcagaaagttgccgtgaactggaccaac 81859381
Query: 823 ttcagcctcaagaaaaccactcccagcacagctcagtgag 862
||||||||||||||||||||||||||||||||||||||||
Sbjct: 81859380 ttcagcctcaagaaaaccactcccagcacagctcagtgag 81859341
Score = 157 bits (79), Expect = 1e-35
Identities = 79/79 (100%)
Strand = Plus / Minus
Query: 688 gacgatgtgttcctgcctaaggacatggacggggcggagatggatgagactgaccgggag 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81860615 gacgatgtgttcctgcctaaggacatggacggggcggagatggatgagactgaccgggag 81860556
Query: 748 gtggagtacttcaagaggt 766
|||||||||||||||||||
Sbjct: 81860555 gtggagtacttcaagaggt 81860537
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,119,123
Number of extensions: 266
Number of successful extensions: 266
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 265
Number of HSP's successfully gapped: 3
Length of query: 1051
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1030
Effective length of database: 2,808,413,156
Effective search space: 2892665550680
Effective search space used: 2892665550680
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)