BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015213
(1008 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_864261.1| PREDICTED: similar to modulator of estrogen ind... 332 e-100
Alignment gi|XP_864238.1| PREDICTED: similar to modulator of estrogen ind... 321 2e-97
Alignment gi|XP_851672.1| PREDICTED: similar to modulator of estrogen ind... 321 2e-97
Alignment gi|XP_864185.1| PREDICTED: similar to modulator of estrogen ind... 321 2e-97
Alignment gi|XP_535497.2| PREDICTED: similar to modulator of estrogen ind... 321 2e-97
Alignment gi|XP_864209.1| PREDICTED: similar to modulator of estrogen ind... 321 2e-97
Alignment gi|XP_864122.1| PREDICTED: similar to modulator of estrogen ind... 321 2e-97
Alignment gi|XP_864104.1| PREDICTED: similar to modulator of estrogen ind... 142 9e-44
Alignment gi|XP_542146.2| PREDICTED: similar to scaffold attachment facto... 70 3e-12
Alignment gi|XP_533945.2| PREDICTED: similar to Scaffold attachment facto... 63 5e-10
>ref|XP_864261.1| PREDICTED: similar to modulator of estrogen induced transcription
isoform b isoform 11 [Canis familiaris].
Length = 1022
Score = 332 bits (851), Expect(2) = e-100
Identities = 187/262 (71%), Positives = 190/262 (72%), Gaps = 6/262 (2%)
Frame = +3
Query: 177 ITDLRVIDLKSELKRRNLDITGVKTVLVSRLKQ-----AIEEEGGDPDNIELTVSTDXXX 341
ITDLRVIDLKSELKRRNLDITGVKTV SRLKQ AIEEEGGDPDNIELTVSTD
Sbjct: 22 ITDLRVIDLKSELKRRNLDITGVKTVPPSRLKQKKTGEAIEEEGGDPDNIELTVSTDTPN 81
Query: 342 XXXXXXXXXXQEADELSGDASVEDDAFVKDCELENQEAHEQDGNDELKDSXXXXXXXXXH 521
QEADELSGDASVEDDAFVKDCELENQEAHEQDGNDELKDS +
Sbjct: 82 KKPTKGKGKKQEADELSGDASVEDDAFVKDCELENQEAHEQDGNDELKDSEEFGENEEEN 141
Query: 522 VHSKELLSAEENKRXXXXXXXXXXXXXXXXXXXXXXXXX-QEGEDDTFLTAQDXXXXXXX 698
VHSKELLSAEENKR QEGEDDTFLTAQD
Sbjct: 142 VHSKELLSAEENKRTHELIEAEAIEEDIEKEDTESQEIEAQEGEDDTFLTAQDGEEEENE 201
Query: 699 XXXXXXXXDHTAHEEMEANSTVKEAEDDNISVTIQAEDAITLDFDGDDLLETGKNVKITD 878
DHTAHEEMEAN+ VKEAEDDNISVTIQAEDAITLDFDGDDLLETGKNVKITD
Sbjct: 202 KEGNLAEADHTAHEEMEANAPVKEAEDDNISVTIQAEDAITLDFDGDDLLETGKNVKITD 261
Query: 879 SEASKPKDGQDVIAQSPEKESR 944
SEASKPKDGQD IAQSPEKES+
Sbjct: 262 SEASKPKDGQDAIAQSPEKESK 283
Score = 54.3 bits (129),
Animal-Genome cDNA 20110601C-015213
Animal-Genome cDNA 20110601C-015213
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015213
(1008 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001093185.1| scaffold attachment factor B1 [Bos taurus]. 69 7e-12
Alignment gi|XP_002688961.1| PREDICTED: scaffold attachment factor B-like... 69 7e-12
Alignment gi|XP_001254975.1| PREDICTED: scaffold attachment factor B, par... 69 7e-12
Alignment gi|XP_002684249.1| PREDICTED: scaffold attachment factor B [Bos... 69 7e-12
Alignment gi|XP_604198.5| PREDICTED: scaffold attachment factor B [Bos ta... 69 7e-12
Alignment gi|XP_002688936.1| PREDICTED: scaffold attachment factor B2-lik... 64 3e-10
Alignment gi|XP_002684257.1| PREDICTED: scaffold attachment factor B2 [Bo... 64 3e-10
Alignment gi|XP_002684256.1| PREDICTED: scaffold attachment factor B-like... 64 3e-10
Alignment gi|XP_585928.4| PREDICTED: scaffold attachment factor B2 [Bos t... 63 4e-10
>ref|NP_001093185.1| scaffold attachment factor B1 [Bos taurus].
Length = 903
Score = 68.9 bits (167), Expect = 7e-12
Identities = 31/48 (64%), Positives = 43/48 (89%)
Frame = +3
Query: 177 ITDLRVIDLKSELKRRNLDITGVKTVLVSRLKQAIEEEGGDPDNIELT 320
+TDLRVIDL++ELK+RNLD +G K+ L+ RL++AIE+EGG+PD IE+T
Sbjct: 31 LTDLRVIDLRAELKKRNLDSSGNKSALMERLRKAIEDEGGNPDEIEIT 78
>ref|XP_002688961.1| PREDICTED: scaffold attachment factor B-like [Bos taurus].
Length = 813
Score = 68.9 bits (167), Expect = 7e-12
Identities = 31/48 (64%), Positives = 43/48 (89%)
Frame = +3
Query: 177 ITDLRVIDLKSELKRRNLDITGVKTVLVSRLKQAIEEEGGDPDNIELT 320
+TDLRVIDL++ELK+RNLD +G K+ L+ RL++AIE+EGG+PD IE+T
Sbjct: 31 LTDLRVIDLRAELKKRNLDSSGNKSALMERLRKAIEDEGGNPDEIEIT 78
>ref|XP_001254975.1| PREDICTED: scaffold attachment factor B, partial [Bos taurus].
Length = 741
Score = 68.9 bits (167), Expect = 7e-12
Identities = 31/48 (64%), Positives = 43/48 (89%)
Frame = +3
Query: 177 ITDLRVIDLKSELKRRNLDITGVKTVLVSRLKQAIEEEGGDPDNIELT 320
+TDLRVIDL++ELK+RNLD +G K+ L+ RL++AIE+EGG+PD IE+T
Sbjct: 31 LTDLRVIDLRAELKKRNLDSSGNKSALMERLRKAIEDEGGNPDEIEIT 78
>ref|XP_002684249.1| PREDICTED: Expect(2) = e-100
Identities = 22/27 (81%), Positives = 24/27 (88%)
Frame = +2
Query: 926 PGERKQDYEMNANHKDGKKEDCVKGDP 1006
P + +DYEMNANHKDGKKEDCVKGDP
Sbjct: 278 PEKESKDYEMNANHKDGKKEDCVKGDP 304
>ref|XP_864238.1| PREDICTED: similar to modulator of estrogen induced transcription
isoform a isoform 10 [Canis familiaris].
Length = 1046
Score = 321 bits (822), Expect(2) = 2e-97
Identities = 187/280 (66%), Positives = 190/280 (67%), Gaps = 24/280 (8%)
Frame = +3
Query: 177 ITDLRVIDLKSELKRRNLDITGVKTVLVSRLKQ-----AIEEEGGDPDNIELTVSTDXXX 341
ITDLRVIDLKSELKRRNLDITGVKTV SRLKQ AIEEEGGDPDNIELTVSTD
Sbjct: 22 ITDLRVIDLKSELKRRNLDITGVKTVPPSRLKQKKTGEAIEEEGGDPDNIELTVSTDTPN 81
Query: 342 XXXXXXXXXXQEADELSGDASVEDDAFVKDCELENQEAHEQDGNDELKDSXXXXXXXXXH 521
QEADELSGDASVEDDAFVKDCELENQEAHEQDGNDELKDS +
Sbjct: 82 KKPTKGKGKKQEADELSGDASVEDDAFVKDCELENQEAHEQDGNDELKDSEEFGENEEEN 141
Query: 522 VHSKELLSAEENKR-XXXXXXXXXXXXXXXXXXXXXXXXXQEGEDDTFLTAQD------- 677
VHSKELLSAEENKR QEGEDDTFLTAQD
Sbjct: 142 VHSKELLSAEENKRTHELIEAEAIEEDIEKEDTESQEIEAQEGEDDTFLTAQDGEEEENE 201
Query: 678 -----------XXXXXXXXXXXXXXXDHTAHEEMEANSTVKEAEDDNISVTIQAEDAITL 824
DHTAHEEMEAN+ VKEAEDDNISVTIQAEDAITL
Sbjct: 202 KDIAGSGDGTQEVSKPLPSEGNLAEADHTAHEEMEANAPVKEAEDDNISVTIQAEDAITL 261
Query: 825 DFDGDDLLETGKNVKITDSEASKPKDGQDVIAQSPEKESR 944
DFDGDDLLETGKNVKITDSEASKPKDGQD IAQSPEKES+
Sbjct: 262 DFDGDDLLETGKNVKITDSEASKPKDGQDAIAQSPEKESK 301
Score = 54.3 bits (129), Expect(2) = 2e-97
Identities = 22/27 (81%), Positives = 24/27 (88%)
Frame = +2
Query: 926 PGERKQDYEMNANHKDGKKEDCVKGDP 1006
P + +DYEMNANHKDGKKEDCVKGDP
Sbjct: 296 PEKESKDYEMNANHKDGKKEDCVKGDP 322
>ref|XP_851672.1| PREDICTED: similar to modulator of estrogen induced transcription
isoform a isoform 2 [Canis familiaris].
Length = 1045
Score = 321 bits (822), Expect(2) = 2e-97
Identities = 187/280 (66%), Positives = 190/280 (67%), Gaps = 24/280 (8%)
Frame = +3
Query: 177 ITDLRVIDLKSELKRRNLDITGVKTVLVSRLKQ-----AIEEEGGDPDNIELTVSTDXXX 341
ITDLRVIDLKSELKRRNLDITGVKTV SRLKQ AIEEEGGDPDNIELTVSTD
Sbjct: 22 ITDLRVIDLKSELKRRNLDITGVKTVPPSRLKQKKTGEAIEEEGGDPDNIELTVSTDTPN 81
Query: 342 XXXXXXXXXXQEADELSGDASVEDDAFVKDCELENQEAHEQDGNDELKDSXXXXXXXXXH 521
QEADELSGDASVEDDAFVKDCELENQEAHEQDGNDELKDS +
Sbjct: 82 KKPTKGKGKKQEADELSGDASVEDDAFVKDCELENQEAHEQDGNDELKDSEEFGENEEEN 141
Query: 522 VHSKELLSAEENKR-XXXXXXXXXXXXXXXXXXXXXXXXXQEGEDDTFLTAQD------- 677
VHSKELLSAEENKR QEGEDDTFLTAQD
Sbjct: 142 VHSKELLSAEENKRTHELIEAEAIEEDIEKEDTESQEIEAQEGEDDTFLTAQDGEEEENE 201
Query: 678 -----------XXXXXXXXXXXXXXXDHTAHEEMEANSTVKEAEDDNISVTIQAEDAITL 824
DHTAHEEMEAN+ VKEAEDDNISVTIQAEDAITL
Sbjct: 202 KDIAGSGDGTQEVSKPLPSEGNLAEADHTAHEEMEANAPVKEAEDDNISVTIQAEDAITL 261
Query: 825 DFDGDDLLETGKNVKITDSEASKPKDGQDVIAQSPEKESR 944
DFDGDDLLETGKNVKITDSEASKPKDGQD IAQSPEKES+
Sbjct: 262 DFDGDDLLETGKNVKITDSEASKPKDGQDAIAQSPEKESK 301
Score = 54.3 bits (129), Expect(2) = 2e-97
Identities = 22/27 (81%), Positives = 24/27 (88%)
Frame = +2
Query: 926 PGERKQDYEMNANHKDGKKEDCVKGDP 1006
P + +DYEMNANHKDGKKEDCVKGDP
Sbjct: 296 PEKESKDYEMNANHKDGKKEDCVKGDP 322
>ref|XP_864185.1| PREDICTED: similar to modulator of estrogen induced transcription
isoform a isoform 8 [Canis familiaris].
Length = 1040
Score = 321 bits (822), Expect(2) = 2e-97
Identities = 187/280 (66%), Positives = 190/280 (67%), Gaps = 24/280 (8%)
Frame = +3
Query: 177 ITDLRVIDLKSELKRRNLDITGVKTVLVSRLKQ-----AIEEEGGDPDNIELTVSTDXXX 341
ITDLRVIDLKSELKRRNLDITGVKTV SRLKQ AIEEEGscaffold attachment factor B [Bos taurus].
Length = 623
Score = 68.9 bits (167), Expect = 7e-12
Identities = 31/48 (64%), Positives = 43/48 (89%)
Frame = +3
Query: 177 ITDLRVIDLKSELKRRNLDITGVKTVLVSRLKQAIEEEGGDPDNIELT 320
+TDLRVIDL++ELK+RNLD +G K+ L+ RL++AIE+EGG+PD IE+T
Sbjct: 31 LTDLRVIDLRAELKKRNLDSSGNKSALMERLRKAIEDEGGNPDEIEIT 78
>ref|XP_604198.5| PREDICTED: scaffold attachment factor B [Bos taurus].
Length = 842
Score = 68.9 bits (167), Expect = 7e-12
Identities = 31/48 (64%), Positives = 43/48 (89%)
Frame = +3
Query: 177 ITDLRVIDLKSELKRRNLDITGVKTVLVSRLKQAIEEEGGDPDNIELT 320
+TDLRVIDL++ELK+RNLD +G K+ L+ RL++AIE+EGG+PD IE+T
Sbjct: 31 LTDLRVIDLRAELKKRNLDSSGNKSALMERLRKAIEDEGGNPDEIEIT 78
>ref|XP_002688936.1| PREDICTED: scaffold attachment factor B2-like [Bos taurus].
Length = 948
Score = 63.5 bits (153), Expect = 3e-10
Identities = 44/128 (34%), Positives = 69/128 (53%), Gaps = 23/128 (17%)
Frame = +3
Query: 177 ITDLRVIDLKSELKRRNLDITGVKTVLVSRLKQAIEEEGGDPDNIELTV-STDXXXXXXX 353
++DLRVIDL++ELK+RNLD G K+VL+ RLK+A++EEG DPD I + + +T
Sbjct: 30 LSDLRVIDLRAELKKRNLDTGGNKSVLMERLKKAVKEEGQDPDEIGIALEATSKKTKRFV 89
Query: 354 XXXXXXQEADELSG------------DASVE--------DDAFVKDCELENQEAHE--QD 467
+E E +G +AS+E D +++ E+EN + +D
Sbjct: 90 KEQKAEEEGTEDNGLEEDSRDGQEDMEASLEGLQSIDMMDVNVLEETEVENSAVPDFGED 149
Query: 468 GNDELKDS 491
G D + +S
Sbjct: 150 GTDSILES 157
>ref|XP_002684257.1| PREDICTED: scaffold attachment factor B2 [Bos taurus].
Length = 948
Score = 63.5 bits (153), Expect = 3e-10
Identities = 44/128 (34%), Positives = 69/128 (53%), Gaps = 23/128 (17%)
Frame = +3
Query: 177 ITDLRVIDLKSELKRRNLDITGVKTVLVSRLKQAIEEEGGDPDNIELTV-STDXXXXXXX 353
++DLRVIDL++ELK+RNLD G K+VL+ RLK+A++EEG DPD I + + +T
Sbjct: 30 LSDLRVIDLRAELKKRNLDTGGNKSVLMERLKKAVKEEGQDPDEIGIALEATSKKTKRFV 89
Query: 354 XXXXXXQEADELSG------------DASVE--------DDAFVKDCELENQEAHE--QD 467
+E E +G +AS+E D +++ E+EN + +D
Sbjct: 90 KEQKAEEEGTEDNGLEEDSRDGQEDMEASLEGLQSIDMMDVNVLEETEVENSAVPDFGED 149
Query: 468 GNDELKDS 491
G D + +S
Sbjct: 150 GTDSILES 157
>ref|XP_002684256.1| PREDICTED: scaffold attachment factor B-like [Bos taurus].
Length = 901
Score = 63.5 bits (153), Expect = 3e-10
Identities = 44/128 (34%), Positives = 69/128 (53%), Gaps = 23/128 (17%)
Frame = +3
Query: 177 ITDLRVIDLKSELKRRNLDITGVKTVLVSRLKQAIEEEGGDPDNIELTV-STDXXXXXXX 353
++DLRVIDL++ELK+RNLD G K+VL+ RLK+A++EEG DPD I + + +T
Sbjct: 30 LSDLRVIDLRAELKKRNLDTGGNKSVLMERLKKAVKEEGQDPDEIGIALEATSKKTKRFV 89
Query: 354 XXXXXXQEADELSG------------DASVE--------DDAFVKDCELENQEAHE--QD 467
+E E +G +AS+E D +++ E+EN + +D
Sbjct: 90 KEQKAEEEGTEDNGLEEDSRDGQEDMEASLEGLQSIDMMDVNVLEETEVENSAVPDFGED 149
Query: 468 GNDELKDS 491
G D + +S
Sbjct: 150 GTDSILES 157
>ref|XP_585928.4| PREDICTED: scaffold attachment factor B2 [Bos taurus].
Length = 228
Score = 63.2 bits (152), Expect = 4e-10
Identities = 43/128 (33%), Positives = 69/128 (53%), Gaps = 23/128 (17%)
Frame = +3
Query: 177 ITDLRVIDLKSELKRRNLDITGVKTVLVSRLKQAIEEEGGDPDNIELTV-STDXXXXXXX 353
+TDLRVIDL++ELK+RNLD +G K+ L+ RL++A++EEG DPD I + + +T
Sbjct: 31 LTDLRVIDLRAELKKRNLDSSGNKSALMERLRKAVKEEGQDPDEIGIALEATSKKTKRFV 90
Query: 354 XXXXXXQEADELSG------------DASVE--------DDAFVKDCELENQEAHE--QD 467
+E E +G +AS+E D +++ E+EN + +D
Sbjct: 91 KEQKAEEEGTEDNGLEEDSRDGQEDMEASLEGLQSIDMMDVNVLEETEVENSAVPDFGED 150
Query: 468 GNDELKDS 491
G D + +S
Sbjct: 151 GTDSILES 158
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 22,505,306
Number of extensions: 412486
Number of successful extensions: 1226
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 1224
Number of HSP's successfully gapped: 9
Length of query: 336
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 233
Effective length of database: 14,273,310
Effective search space: 3325681230
Effective search space used: 3325681230
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
GDPDNIELTVSTD
Sbjct: 22 ITDLRVIDLKSELKRRNLDITGVKTVPPSRLKQKKTGEAIEEEGGDPDNIELTVSTDTPN 81
Query: 342 XXXXXXXXXXQEADELSGDASVEDDAFVKDCELENQEAHEQDGNDELKDSXXXXXXXXXH 521
QEADELSGDASVEDDAFVKDCELENQEAHEQDGNDELKDS +
Sbjct: 82 KKPTKGKGKKQEADELSGDASVEDDAFVKDCELENQEAHEQDGNDELKDSEEFGENEEEN 141
Query: 522 VHSKELLSAEENKR-XXXXXXXXXXXXXXXXXXXXXXXXXQEGEDDTFLTAQD------- 677
VHSKELLSAEENKR QEGEDDTFLTAQD
Sbjct: 142 VHSKELLSAEENKRTHELIEAEAIEEDIEKEDTESQEIEAQEGEDDTFLTAQDGEEEENE 201
Query: 678 -----------XXXXXXXXXXXXXXXDHTAHEEMEANSTVKEAEDDNISVTIQAEDAITL 824
DHTAHEEMEAN+ VKEAEDDNISVTIQAEDAITL
Sbjct: 202 KDIAGSGDGTQEVSKPLPSEGNLAEADHTAHEEMEANAPVKEAEDDNISVTIQAEDAITL 261
Query: 825 DFDGDDLLETGKNVKITDSEASKPKDGQDVIAQSPEKESR 944
DFDGDDLLETGKNVKITDSEASKPKDGQD IAQSPEKES+
Sbjct: 262 DFDGDDLLETGKNVKITDSEASKPKDGQDAIAQSPEKESK 301
Score = 54.3 bits (129), Expect(2) = 2e-97
Identities = 22/27 (81%), Positives = 24/27 (88%)
Frame = +2
Query: 926 PGERKQDYEMNANHKDGKKEDCVKGDP 1006
P + +DYEMNANHKDGKKEDCVKGDP
Sbjct: 296 PEKESKDYEMNANHKDGKKEDCVKGDP 322
>ref|XP_535497.2| PREDICTED: similar to modulator of estrogen induced transcription
isoform a isoform 1 [Canis familiaris].
Length = 1040
Score = 321 bits (822), Expect(2) = 2e-97
Identities = 187/280 (66%), Positives = 190/280 (67%), Gaps = 24/280 (8%)
Frame = +3
Query: 177 ITDLRVIDLKSELKRRNLDITGVKTVLVSRLKQ-----AIEEEGGDPDNIELTVSTDXXX 341
ITDLRVIDLKSELKRRNLDITGVKTV SRLKQ AIEEEGGDPDNIELTVSTD
Sbjct: 22 ITDLRVIDLKSELKRRNLDITGVKTVPPSRLKQKKTGEAIEEEGGDPDNIELTVSTDTPN 81
Query: 342 XXXXXXXXXXQEADELSGDASVEDDAFVKDCELENQEAHEQDGNDELKDSXXXXXXXXXH 521
QEADELSGDASVEDDAFVKDCELENQEAHEQDGNDELKDS +
Sbjct: 82 KKPTKGKGKKQEADELSGDASVEDDAFVKDCELENQEAHEQDGNDELKDSEEFGENEEEN 141
Query: 522 VHSKELLSAEENKR-XXXXXXXXXXXXXXXXXXXXXXXXXQEGEDDTFLTAQD------- 677
VHSKELLSAEENKR QEGEDDTFLTAQD
Sbjct: 142 VHSKELLSAEENKRTHELIEAEAIEEDIEKEDTESQEIEAQEGEDDTFLTAQDGEEEENE 201
Query: 678 -----------XXXXXXXXXXXXXXXDHTAHEEMEANSTVKEAEDDNISVTIQAEDAITL 824
DHTAHEEMEAN+ VKEAEDDNISVTIQAEDAITL
Sbjct: 202 KDIAGSGDGTQEVSKPLPSEGNLAEADHTAHEEMEANAPVKEAEDDNISVTIQAEDAITL 261
Query: 825 DFDGDDLLETGKNVKITDSEASKPKDGQDVIAQSPEKESR 944
DFDGDDLLETGKNVKITDSEASKPKDGQD IAQSPEKES+
Sbjct: 262 DFDGDDLLETGKNVKITDSEASKPKDGQDAIAQSPEKESK 301
Score = 54.3 bits (129), Expect(2) = 2e-97
Identities = 22/27 (81%), Positives = 24/27 (88%)
Frame = +2
Query: 926 PGERKQDYEMNANHKDGKKEDCVKGDP 1006
P + +DYEMNANHKDGKKEDCVKGDP
Sbjct: 296 PEKESKDYEMNANHKDGKKEDCVKGDP 322
>ref|XP_864209.1| PREDICTED: similar to modulator of estrogen induced transcription
isoform a isoform 9 [Canis familiaris].
Length = 1013
Score = 321 bits (822), Expect(2) = 2e-97
Identities = 187/280 (66%), Positives = 190/280 (67%), Gaps = 24/280 (8%)
Frame = +3
Query: 177 ITDLRVIDLKSELKRRNLDITGVKTVLVSRLKQ-----AIEEEGGDPDNIELTVSTDXXX 341
ITDLRVIDLKSELKRRNLDITGVKTV SRLKQ AIEEEGGDPDNIELTVSTD
Sbjct: 22 ITDLRVIDLKSELKRRNLDITGVKTVPPSRLKQKKTGEAIEEEGGDPDNIELTVSTDTPN 81
Query: 342 XXXXXXXXXXQEADELSGDASVEDDAFVKDCELENQEAHEQDGNDELKDSXXXXXXXXXH 521
QEADELSGDASVEDDAFVKDCELENQEAHEQDGNDELKDS +
Sbjct: 82 KKPTKGKGKKQEADELSGDASVEDDAFVKDCELENQEAHEQDGNDELKDSEEFGENEEEN 141
Query: 522 VHSKELLSAEENKR-XXXXXXXXXXXXXXXXXXXXXXXXXQEGEDDTFLTAQD------- 677
VHSKELLSAEENKR QEGEDDTFLTAQD
Sbjct: 142 VHSKELLSAEENKRTHELIEAEAIEEDIEKEDTESQEIEAQEGEDDTFLTAQDGEEEENE 201
Query: 678 -----------XXXXXXXXXXXXXXXDHTAHEEMEANSTVKEAEDDNISVTIQAEDAITL 824
DHTAHEEMEAN+ VKEAEDDNISVTIQAEDAITL
Sbjct: 202 KDIAGSGDGTQEVSKPLPSEGNLAEADHTAHEEMEANAPVKEAEDDNISVTIQAEDAITL 261
Query: 825 DFDGDDLLETGKNVKITDSEASKPKDGQDVIAQSPEKESR 944
DFDGDDLLETGKNVKITDSEASKPKDGQD IAQSPEKES+
Sbjct: 262 DFDGDDLLETGKNVKITDSEASKPKDGQDAIAQSPEKESK 301
Score = 54.3 bits (129), Expect(2) = 2e-97
Identities = 22/27 (81%), Positives = 24/27 (88%)
Frame = +2
Query: 926 PGERKQDYEMNANHKDGKKEDCVKGDP 1006
P + +DYEMNANHKDGKKEDCVKGDP
Sbjct: 296 PEKESKDYEMNANHKDGKKEDCVKGDP 322
>ref|XP_864122.1| PREDICTED: similar to modulator of estrogen induced transcription
isoform a isoform 6 [Canis familiaris].
Length = 654
Score = 321 bits (822), Expect(2) = 2e-97
Identities = 187/280 (66%), Positives = 190/280 (67%), Gaps = 24/280 (8%)
Frame = +3
Query: 177 ITDLRVIDLKSELKRRNLDITGVKTVLVSRLKQ-----AIEEEGGDPDNIELTVSTDXXX 341
ITDLRVIDLKSELKRRNLDITGVKTV SRLKQ AIEEEGGDPDNIELTVSTD
Sbjct: 22 ITDLRVIDLKSELKRRNLDITGVKTVPPSRLKQKKTGEAIEEEGGDPDNIELTVSTDTPN 81
Query: 342 XXXXXXXXXXQEADELSGDASVEDDAFVKDCELENQEAHEQDGNDELKDSXXXXXXXXXH 521
QEADELSGDASVEDDAFVKDCELENQEAHEQDGNDELKDS +
Sbjct: 82 KKPTKGKGKKQEADELSGDASVEDDAFVKDCELENQEAHEQDGNDELKDSEEFGENEEEN 141
Query: 522 VHSKELLSAEENKR-XXXXXXXXXXXXXXXXXXXXXXXXXQEGEDDTFLTAQD------- 677
VHSKELLSAEENKR QEGEDDTFLTAQD
Sbjct: 142 VHSKELLSAEENKRTHELIEAEAIEEDIEKEDTESQEIEAQEGEDDTFLTAQDGEEEENE 201
Query: 678 -----------XXXXXXXXXXXXXXXDHTAHEEMEANSTVKEAEDDNISVTIQAEDAITL 824
DHTAHEEMEAN+ VKEAEDDNISVTIQAEDAITL
Sbjct: 202 KDIAGSGDGTQEVSKPLPSEGNLAEADHTAHEEMEANAPVKEAEDDNISVTIQAEDAITL 261
Query: 825 DFDGDDLLETGKNVKITDSEASKPKDGQDVIAQSPEKESR 944
DFDGDDLLETGKNVKITDSEASKPKDGQD IAQSPEKES+
Sbjct: 262 DFDGDDLLETGKNVKITDSEASKPKDGQDAIAQSPEKESK 301
Score = 54.3 bits (129), Expect(2) = 2e-97
Identities = 22/27 (81%), Positives = 24/27 (88%)
Frame = +2
Query: 926 PGERKQDYEMNANHKDGKKEDCVKGDP 1006
P + +DYEMNANHKDGKKEDCVKGDP
Sbjct: 296 PEKESKDYEMNANHKDGKKEDCVKGDP 322
>ref|XP_864104.1| PREDICTED: similar to modulator of estrogen induced transcription
isoform b isoform 5 [Canis familiaris].
Length = 273
Score = 142 bits (357), Expect(2) = 9e-44
Identities = 70/74 (94%), Positives = 72/74 (97%)
Frame = +3
Query: 723 DHTAHEEMEANSTVKEAEDDNISVTIQAEDAITLDFDGDDLLETGKNVKITDSEASKPKD 902
DHTAHEEMEAN+ VKEAEDDNISVTIQAEDAITLDFDGDDLLETGKNVKITDSEASKPKD
Sbjct: 126 DHTAHEEMEANAPVKEAEDDNISVTIQAEDAITLDFDGDDLLETGKNVKITDSEASKPKD 185
Query: 903 GQDVIAQSPEKESR 944
GQD IAQSPEKES+
Sbjct: 186 GQDAIAQSPEKESK 199
Score = 54.3 bits (129), Expect(2) = 9e-44
Identities = 22/27 (81%), Positives = 24/27 (88%)
Frame = +2
Query: 926 PGERKQDYEMNANHKDGKKEDCVKGDP 1006
P + +DYEMNANHKDGKKEDCVKGDP
Sbjct: 194 PEKESKDYEMNANHKDGKKEDCVKGDP 220
Score = 127 bits (318), Expect = 2e-29
Identities = 73/97 (75%), Positives = 73/97 (75%), Gaps = 5/97 (5%)
Frame = +3
Query: 177 ITDLRVIDLKSELKRRNLDITGVKTVLVSRLKQ-----AIEEEGGDPDNIELTVSTDXXX 341
ITDLRVIDLKSELKRRNLDITGVKTV SRLKQ AIEEEGGDPDNIELTVSTD
Sbjct: 22 ITDLRVIDLKSELKRRNLDITGVKTVPPSRLKQKKTGEAIEEEGGDPDNIELTVSTDTPN 81
Query: 342 XXXXXXXXXXQEADELSGDASVEDDAFVKDCELENQE 452
QEADELSGDASVEDDAFVKD E E E
Sbjct: 82 KKPTKGKGKKQEADELSGDASVEDDAFVKDGEEEENE 118
>ref|XP_542146.2| PREDICTED: similar to scaffold attachment factor B [Canis
familiaris].
Length = 1000
Score = 70.1 bits (170), Expect = 3e-12
Identities = 32/48 (66%), Positives = 44/48 (91%)
Frame = +3
Query: 177 ITDLRVIDLKSELKRRNLDITGVKTVLVSRLKQAIEEEGGDPDNIELT 320
++DLRVIDL++ELK+RNLD +G K+VL+ RLK+AIE+EGG+PD IE+T
Sbjct: 115 LSDLRVIDLRAELKKRNLDSSGNKSVLMERLKKAIEDEGGNPDEIEIT 162
>ref|XP_533945.2| PREDICTED: similar to Scaffold attachment factor B2 isoform 1
[Canis familiaris].
Length = 953
Score = 62.8 bits (151), Expect = 5e-10
Identities = 29/45 (64%), Positives = 39/45 (86%)
Frame = +3
Query: 177 ITDLRVIDLKSELKRRNLDITGVKTVLVSRLKQAIEEEGGDPDNI 311
++DLRVIDL++ELK+RNLD G K+VL+ RLK+A++EEG DPD I
Sbjct: 30 LSDLRVIDLRAELKKRNLDTGGNKSVLMERLKKAVKEEGQDPDEI 74
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 23,509,761
Number of extensions: 424953
Number of successful extensions: 1158
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 1142
Number of HSP's successfully gapped: 20
Length of query: 336
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 233
Effective length of database: 15,440,896
Effective search space: 3597728768
Effective search space used: 3597728768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015213
(1008 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003353386.1| PREDICTED: SAFB-like transcription modulator... 355 e-108
Alignment gi|XP_003353385.1| PREDICTED: SAFB-like transcription modulator... 344 e-104
Alignment gi|XP_003353392.1| PREDICTED: SAFB-like transcription modulator... 147 2e-45
Alignment gi|XP_003123153.2| PREDICTED: scaffold attachment factor B1 [Su... 69 4e-12
Alignment gi|XP_003123154.2| PREDICTED: LOW QUALITY PROTEIN: scaffold att... 62 5e-10
>ref|XP_003353386.1| PREDICTED: SAFB-like transcription modulator isoform 2 [Sus
scrofa].
Length = 1016
Score = 355 bits (912), Expect(2) = e-108
Identities = 193/256 (75%), Positives = 194/256 (75%)
Frame = +3
Query: 177 ITDLRVIDLKSELKRRNLDITGVKTVLVSRLKQAIEEEGGDPDNIELTVSTDXXXXXXXX 356
ITDLRVIDLKSELKRRNLDITGVKTVLVSRLKQAIEEEGGDPDNIELTVSTD
Sbjct: 22 ITDLRVIDLKSELKRRNLDITGVKTVLVSRLKQAIEEEGGDPDNIELTVSTDTPNKKPTK 81
Query: 357 XXXXXQEADELSGDASVEDDAFVKDCELENQEAHEQDGNDELKDSXXXXXXXXXHVHSKE 536
QEADELSGDASVEDDAFVKDCELENQEAHEQDGNDELKDS HVHSKE
Sbjct: 82 GKGKKQEADELSGDASVEDDAFVKDCELENQEAHEQDGNDELKDSEEFGENEEEHVHSKE 141
Query: 537 LLSAEENKRXXXXXXXXXXXXXXXXXXXXXXXXXQEGEDDTFLTAQDXXXXXXXXXXXXX 716
LLSAEENKR QEGEDDTFLTAQD
Sbjct: 142 LLSAEENKRAHELIEAEAIEDIEKEDIESQEIEAQEGEDDTFLTAQDGEEEENEKEGNLA 201
Query: 717 XXDHTAHEEMEANSTVKEAEDDNISVTIQAEDAITLDFDGDDLLETGKNVKITDSEASKP 896
DHTAHEEMEANSTVKEAEDDNISVTIQAEDAITLDFDGDDLLETGKNVKITDSEASKP
Sbjct: 202 EADHTAHEEMEANSTVKEAEDDNISVTIQAEDAITLDFDGDDLLETGKNVKITDSEASKP 261
Query: 897 KDGQDVIAQSPEKESR 944
KDGQDVIAQSPEKES+
Sbjct: 262 KDGQDVIAQSPEKESK 277
Score = 54.3 bits (129), Expect(2) = e-108
Identities = 22/27 (81%), Positives = 24/27 (88%)
Frame = +2
Query: 926 PGERKQDYEMNANHKDGKKEDCVKGDP 1006
P + +DYEMNANHKDGKKEDCVKGDP
Sbjct: 272 PEKESKDYEMNANHKDGKKEDCVKGDP 298
>ref|XP_003353385.1| PREDICTED: SAFB-like transcription modulator isoform 1 [Sus
scrofa].
Length = 1034
Score = 344 bits (883), Expect(2) = e-104
Identities = 193/274 (70%), Positives = 194/274 (70%), Gaps = 18/274 (6%)
Frame = +3
Query: 177 ITDLRVIDLKSELKRRNLDITGVKTVLVSRLKQAIEEEGGDPDNIELTVSTDXXXXXXXX 356
ITDLRVIDLKSELKRRNLDITGVKTVLVSRLKQAIEEEGGDPDNIELTVSTD
Sbjct: 22 ITDLRVIDLKSELKRRNLDITGVKTVLVSRLKQAIEEEGGDPDNIELTVSTDTPNKKPTK 81
Query: 357 XXXXXQEADELSGDASVEDDAFVKDCELENQEAHEQDGNDELKDSXXXXXXXXXHVHSKE 536
QEADELSGDASVEDDAFVKDCELENQEAHEQDGNDELKDS HVHSKE
Sbjct: 82 GKGKKQEADELSGDASVEDDAFVKDCELENQEAHEQDGNDELKDSEEFGENEEEHVHSKE 141
Query: 537 LLSAEENKRXXXXXXXXXXXXXXXXXXXXXXXXXQEGEDDTFLTAQD------------- 677
LLSAEENKR QEGEDDTFLTAQD
Sbjct: 142 LLSAEENKRAHELIEAEAIEDIEKEDIESQEIEAQEGEDDTFLTAQDGEEEENEKDIAGS 201
Query: 678 -----XXXXXXXXXXXXXXXDHTAHEEMEANSTVKEAEDDNISVTIQAEDAITLDFDGDD 842
DHTAHEEMEANSTVKEAEDDNISVTIQAEDAITLDFDGDD
Sbjct: 202 GDGTQEVSKPLPSEGNLAEADHTAHEEMEANSTVKEAEDDNISVTIQAEDAITLDFDGDD 261
Query: 843 LLETGKNVKITDSEASKPKDGQDVIAQSPEKESR 944
LLETGKNVKITDSEASKPKDGQDVIAQSPEKES+
Sbjct: 262 LLETGKNVKITDSEASKPKDGQDVIAQSPEKESK 295
Score = 54.3 bits (129), Expect(2) = e-104
Identities = 22/27 (81%), Positives = 24/27 (88%)
Frame = +2
Query: 926 PGERKQDYEMNANHKDGKKEDCVKGDP 1006
P + +DYEMNANHKDGKKEDCVKGDP
Sbjct: 290 PEKESKDYEMNANHKDGKKEDCVKGDP 316
>ref|XP_003353392.1| PREDICTED: SAFB-like transcription modulator-like [Sus scrofa].
Length = 482
Score = 147 bits (370), Expect(2) = 2e-45
Identities = 73/74 (98%), Positives = 74/74 (100%)
Frame = +3
Query: 723 DHTAHEEMEANSTVKEAEDDNISVTIQAEDAITLDFDGDDLLETGKNVKITDSEASKPKD 902
DHTAHEEMEANSTVKEAEDDNISVTIQAEDAITLDFDGDDLLETGKNVKITDSEASKPKD
Sbjct: 64 DHTAHEEMEANSTVKEAEDDNISVTIQAEDAITLDFDGDDLLETGKNVKITDSEASKPKD 123
Query: 903 GQDVIAQSPEKESR 944
GQDVIAQSPEKES+
Sbjct: 124 GQDVIAQSPEKESK 137
Score = 54.3 bits (129), Expect(2) = 2e-45
Identities = 22/27 (81%), Positives = 24/27 (88%)
Frame = +2
Query: 926 PGERKQDYEMNANHKDGKKEDCVKGDP 1006
P + +DYEMNANHKDGKKEDCVKGDP
Sbjct: 132 PEKESKDYEMNANHKDGKKEDCVKGDP 158
Score = 110 bits (275), Expect = 1e-24
Identities = 55/64 (85%), Positives = 55/64 (85%)
Frame = +3
Query: 372 QEADELSGDASVEDDAFVKDCELENQEAHEQDGNDELKDSXXXXXXXXXHVHSKELLSAE 551
QEADELSGDASVEDDAFVKDCELENQEAHEQDGNDELKDS HVHSKELLSAE
Sbjct: 390 QEADELSGDASVEDDAFVKDCELENQEAHEQDGNDELKDSEEFGENEEEHVHSKELLSAE 449
Query: 552 ENKR 563
ENKR
Sbjct: 450 ENKR 453
>ref|XP_003123153.2| PREDICTED: scaffold attachment factor B1 [Sus scrofa].
Length = 476
Score = 68.9 bits (167), Expect = 4e-12
Identities = 31/48 (64%), Positives = 44/48 (91%)
Frame = +3
Query: 177 ITDLRVIDLKSELKRRNLDITGVKTVLVSRLKQAIEEEGGDPDNIELT 320
++DLRVIDL++EL++RNLD +G K+VL+ RLK+AIE+EGG+PD IE+T
Sbjct: 31 LSDLRVIDLRAELRKRNLDSSGNKSVLMERLKKAIEDEGGNPDEIEIT 78
>ref|XP_003123154.2| PREDICTED: LOW QUALITY PROTEIN: scaffold attachment factor B2 [Sus
scrofa].
Length = 949
Score = 62.0 bits (149), Expect = 5e-10
Identities = 44/129 (34%), Positives = 69/129 (53%), Gaps = 24/129 (18%)
Frame = +3
Query: 177 ITDLRVIDLKSELKRRNLDITGVKTVLVSRLKQAIEEEGGDPD--NIELTVSTDXXXXXX 350
++DLRVIDL++ELK+RNLD G K+VL+ RLK+A++EEG PD I L ++
Sbjct: 30 LSDLRVIDLRAELKKRNLDTGGNKSVLMERLKKAVKEEGQGPDEIGIALEATSKKTTKRC 89
Query: 351 XXXXXXXQEADELSG------------DASVE--------DDAFVKDCELENQEAHE--Q 464
+E E +G +AS+E D + +++ E+EN A + +
Sbjct: 90 LKGQKMEEEGTEDNGLEEDSRDGQEDMEASLESLQNIDMMDVSVLEETEVENSSAPDFGE 149
Query: 465 DGNDELKDS 491
DG D + +S
Sbjct: 150 DGTDSILES 158
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 14,414,552
Number of extensions: 261841
Number of successful extensions: 708
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 705
Number of HSP's successfully gapped: 9
Length of query: 336
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 237
Effective length of database: 8,879,129
Effective search space: 2104353573
Effective search space used: 2104353573
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015213
(1008 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080613.1| SAFB-like transcription modulator isoform b [Mu... 323 6e-96
Alignment gi|NP_079966.2| SAFB-like transcription modulator isoform a [Mu... 312 1e-92
Alignment gi|NP_001156772.1| scaffold attachment factor B [Mus musculus]. 70 3e-12
Alignment gi|NP_001025150.2| scaffold attachment factor B2 [Mus musculus]. 59 8e-09
>ref|NP_080613.1| SAFB-like transcription modulator isoform b [Mus musculus].
Length = 1013
Score = 323 bits (829), Expect(2) = 6e-96
Identities = 176/256 (68%), Positives = 185/256 (72%)
Frame = +3
Query: 177 ITDLRVIDLKSELKRRNLDITGVKTVLVSRLKQAIEEEGGDPDNIELTVSTDXXXXXXXX 356
IT+LRVIDL+SELKRRNLDI GVKTVLVSRLKQAIEEEGGDPDNIELTVSTD
Sbjct: 22 ITELRVIDLRSELKRRNLDINGVKTVLVSRLKQAIEEEGGDPDNIELTVSTDTPNKKPTK 81
Query: 357 XXXXXQEADELSGDASVEDDAFVKDCELENQEAHEQDGNDELKDSXXXXXXXXXHVHSKE 536
QEADELSGDASVEDD+FVKDCELENQE H+QDGN+ELKD VHS+E
Sbjct: 82 GKGKKQEADELSGDASVEDDSFVKDCELENQETHDQDGNEELKDLEEFGENEEEIVHSQE 141
Query: 537 LLSAEENKRXXXXXXXXXXXXXXXXXXXXXXXXXQEGEDDTFLTAQDXXXXXXXXXXXXX 716
LLS EENK QEGEDDTFLTAQD
Sbjct: 142 LLSTEENKTTQEFVEAEAIEDREKEDIESQETEAQEGEDDTFLTAQDGEEEENEKEGSLA 201
Query: 717 XXDHTAHEEMEANSTVKEAEDDNISVTIQAEDAITLDFDGDDLLETGKNVKITDSEASKP 896
DHTAHEEMEAN+T KEAEDDNISVTIQAEDAITLDFDGDDLLETGKNVKITDSEASKP
Sbjct: 202 EADHTAHEEMEANATGKEAEDDNISVTIQAEDAITLDFDGDDLLETGKNVKITDSEASKP 261
Query: 897 KDGQDVIAQSPEKESR 944
KD QD IAQSPEKE++
Sbjct: 262 KDVQDAIAQSPEKEAK 277
Score = 46.6 bits (109), Expect(2) = 6e-96
Identities = 19/27 (70%), Positives = 22/27 (81%)
Frame = +2
Query: 926 PGERKQDYEMNANHKDGKKEDCVKGDP 1006
P + +DYEMN NHKDGKKED VKG+P
Sbjct: 272 PEKEAKDYEMNPNHKDGKKEDSVKGEP 298
>ref|NP_079966.2| SAFB-like transcription modulator isoform a [Mus musculus].
Length = 1031
Score = 312 bits (800), Expect(2) = 1e-92
Identities = 176/274 (64%), Positives = 185/274 (67%), Gaps = 18/274 (6%)
Frame = +3
Query: 177 ITDLRVIDLKSELKRRNLDITGVKTVLVSRLKQAIEEEGGDPDNIELTVSTDXXXXXXXX 356
IT+LRVIDL+SELKRRNLDI GVKTVLVSRLKQAIEEEGGDPDNIELTVSTD
Sbjct: 22 ITELRVIDLRSELKRRNLDINGVKTVLVSRLKQAIEEEGGDPDNIELTVSTDTPNKKPTK 81
Query: 357 XXXXXQEADELSGDASVEDDAFVKDCELENQEAHEQDGNDELKDSXXXXXXXXXHVHSKE 536
QEADELSGDASVEDD+FVKDCELENQE H+QDGN+ELKD VHS+E
Sbjct: 82 GKGKKQEADELSGDASVEDDSFVKDCELENQETHDQDGNEELKDLEEFGENEEEIVHSQE 141
Query: 537 LLSAEENKRXXXXXXXXXXXXXXXXXXXXXXXXXQEGEDDTFLTAQD------------- 677
LLS EENK QEGEDDTFLTAQD
Sbjct: 142 LLSTEENKTTQEFVEAEAIEDREKEDIESQETEAQEGEDDTFLTAQDGEEEENEKDIAGS 201
Query: 678 -----XXXXXXXXXXXXXXXDHTAHEEMEANSTVKEAEDDNISVTIQAEDAITLDFDGDD 842
DHTAHEEMEAN+T KEAEDDNISVTIQAEDAITLDFDGDD
Sbjct: 202 GDGTQEVSKPLPSEGSLAEADHTAHEEMEANATGKEAEDDNISVTIQAEDAITLDFDGDD 261
Query: 843 LLETGKNVKITDSEASKPKDGQDVIAQSPEKESR 944
LLETGKNVKITDSEASKPKD QD IAQSPEKE++
Sbjct: 262 LLETGKNVKITDSEASKPKDVQDAIAQSPEKEAK 295
Score = 46.6 bits (109), Expect(2) = 1e-92
Identities = 19/27 (70%), Positives = 22/27 (81%)
Frame = +2
Query: 926 PGERKQDYEMNANHKDGKKEDCVKGDP 1006
P + +DYEMN NHKDGKKED VKG+P
Sbjct: 290 PEKEAKDYEMNPNHKDGKKEDSVKGEP 316
>ref|NP_001156772.1| scaffold attachment factor B [Mus musculus].
Length = 937
Score = 69.7 bits (169), Expect = 3e-12
Identities = 32/48 (66%), Positives = 44/48 (91%)
Frame = +3
Query: 177 ITDLRVIDLKSELKRRNLDITGVKTVLVSRLKQAIEEEGGDPDNIELT 320
++DLRVIDL++ELK+RNLD +G K+VL+ RLK+AIE+EGG+PD IE+T
Sbjct: 31 LSDLRVIDLRAELKKRNLDSSGNKSVLMERLKKAIEDEGGNPDEIEVT 78
>ref|NP_001025150.2| scaffold attachment factor B2 [Mus musculus].
Length = 991
Score = 58.5 bits (140), Expect = 8e-09
Identities = 32/100 (32%), Positives = 55/100 (55%)
Frame = +3
Query: 177 ITDLRVIDLKSELKRRNLDITGVKTVLVSRLKQAIEEEGGDPDNIELTVSTDXXXXXXXX 356
++DLRVIDL++ELK+RNLD G K+VL+ RL++A +EEG +P+ + ++
Sbjct: 25 LSDLRVIDLRAELKKRNLDTGGNKSVLMERLRKAFKEEGQEPEEVGISWGAVSKRAVKRN 84
Query: 357 XXXXXQEADELSGDASVEDDAFVKDCELENQEAHEQDGND 476
E + + ED + +D + Q + ++D D
Sbjct: 85 TKGSKMEEEGSEDNGLEEDSRYGQDGVVILQSSQDRDTMD 124
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 19,843,312
Number of extensions: 363072
Number of successful extensions: 1023
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1020
Number of HSP's successfully gapped: 6
Length of query: 336
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 234
Effective length of database: 12,553,887
Effective search space: 2937609558
Effective search space used: 2937609558
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015213
(1008 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001013865.1| SAFB-like transcription modulator isoform b ... 345 e-105
Alignment gi|NP_079031.2| SAFB-like transcription modulator isoform a [Ho... 334 e-101
Alignment gi|NP_001188269.1| scaffold attachment factor B1 isoform 4 [Hom... 71 1e-12
Alignment gi|NP_001188268.1| scaffold attachment factor B1 isoform 2 [Hom... 68 2e-11
Alignment gi|NP_001188267.1| scaffold attachment factor B1 isoform 1 [Hom... 68 2e-11
Alignment gi|NP_002958.2| scaffold attachment factor B1 isoform 3 [Homo s... 68 2e-11
Alignment gi|NP_055464.1| scaffold attachment factor B2 [Homo sapiens]. 64 2e-10
>ref|NP_001013865.1| SAFB-like transcription modulator isoform b [Homo sapiens].
Length = 1016
Score = 345 bits (886), Expect(2) = e-105
Identities = 186/256 (72%), Positives = 192/256 (75%)
Frame = +3
Query: 177 ITDLRVIDLKSELKRRNLDITGVKTVLVSRLKQAIEEEGGDPDNIELTVSTDXXXXXXXX 356
ITDLRVIDLKSELKRRNLDITGVKTVL+SRLKQAIEEEGGDPDNIELTVSTD
Sbjct: 22 ITDLRVIDLKSELKRRNLDITGVKTVLISRLKQAIEEEGGDPDNIELTVSTDTPNKKPTK 81
Query: 357 XXXXXQEADELSGDASVEDDAFVKDCELENQEAHEQDGNDELKDSXXXXXXXXXHVHSKE 536
EADELSGDASVEDDAF+KDCELENQEAHEQDGNDELKDS +VHSKE
Sbjct: 82 GKGKKHEADELSGDASVEDDAFIKDCELENQEAHEQDGNDELKDSEEFGENEEENVHSKE 141
Query: 537 LLSAEENKRXXXXXXXXXXXXXXXXXXXXXXXXXQEGEDDTFLTAQDXXXXXXXXXXXXX 716
LLSAEENKR QEGEDDTFLTAQD
Sbjct: 142 LLSAEENKRAHELIEAEGIEDIEKEDIESQEIEAQEGEDDTFLTAQDGEEEENEKEGSLA 201
Query: 717 XXDHTAHEEMEANSTVKEAEDDNISVTIQAEDAITLDFDGDDLLETGKNVKITDSEASKP 896
DHTAHEEMEA++TVKEAEDDNISVTIQAEDAITLDFDGDDLLETGKNVKITDSEASKP
Sbjct: 202 EADHTAHEEMEAHTTVKEAEDDNISVTIQAEDAITLDFDGDDLLETGKNVKITDSEASKP 261
Query: 897 KDGQDVIAQSPEKESR 944
KDGQD IAQSPEKES+
Sbjct: 262 KDGQDAIAQSPEKESK 277
Score = 54.3 bits (129), Expect(2) = e-105
Identities = 22/27 (81%), Positives = 24/27 (88%)
Frame = +2
Query: 926 PGERKQDYEMNANHKDGKKEDCVKGDP 1006
P + +DYEMNANHKDGKKEDCVKGDP
Sbjct: 272 PEKESKDYEMNANHKDGKKEDCVKGDP 298
>ref|NP_079031.2| SAFB-like transcription modulator isoform a [Homo sapiens].
Length = 1034
Score = 334 bits (857), Expect(2) = e-101
Identities = 186/274 (67%), Positives = 192/274 (70%), Gaps = 18/274 (6%)
Frame = +3
Query: 177 ITDLRVIDLKSELKRRNLDITGVKTVLVSRLKQAIEEEGGDPDNIELTVSTDXXXXXXXX 356
ITDLRVIDLKSELKRRNLDITGVKTVL+SRLKQAIEEEGGDPDNIELTVSTD
Sbjct: 22 ITDLRVIDLKSELKRRNLDITGVKTVLISRLKQAIEEEGGDPDNIELTVSTDTPNKKPTK 81
Query: 357 XXXXXQEADELSGDASVEDDAFVKDCELENQEAHEQDGNDELKDSXXXXXXXXXHVHSKE 536
EADELSGDASVEDDAF+KDCELENQEAHEQDGNDELKDS +VHSKE
Sbjct: 82 GKGKKHEADELSGDASVEDDAFIKDCELENQEAHEQDGNDELKDSEEFGENEEENVHSKE 141
Query: 537 LLSAEENKRXXXXXXXXXXXXXXXXXXXXXXXXXQEGEDDTFLTAQD------------- 677
LLSAEENKR QEGEDDTFLTAQD
Sbjct: 142 LLSAEENKRAHELIEAEGIEDIEKEDIESQEIEAQEGEDDTFLTAQDGEEEENEKDIAGS 201
Query: 678 -----XXXXXXXXXXXXXXXDHTAHEEMEANSTVKEAEDDNISVTIQAEDAITLDFDGDD 842
DHTAHEEMEA++TVKEAEDDNISVTIQAEDAITLDFDGDD
Sbjct: 202 GDGTQEVSKPLPSEGSLAEADHTAHEEMEAHTTVKEAEDDNISVTIQAEDAITLDFDGDD 261
Query: 843 LLETGKNVKITDSEASKPKDGQDVIAQSPEKESR 944
LLETGKNVKITDSEASKPKDGQD IAQSPEKES+
Sbjct: 262 LLETGKNVKITDSEASKPKDGQDAIAQSPEKESK 295
Score = 54.3 bits (129), Expect(2) = e-101
Identities = 22/27 (81%), Positives = 24/27 (88%)
Frame = +2
Query: 926 PGERKQDYEMNANHKDGKKEDCVKGDP 1006
P + +DYEMNANHKDGKKEDCVKGDP
Sbjct: 290 PEKESKDYEMNANHKDGKKEDCVKGDP 316
>ref|NP_001188269.1| scaffold attachment factor B1 isoform 4 [Homo sapiens].
Length = 848
Score = 71.2 bits (173), Expect = 1e-12
Identities = 37/99 (37%), Positives = 60/99 (60%), Gaps = 7/99 (7%)
Frame = +3
Query: 177 ITDLRVIDLKSELKRRNLDITGVKTVLVSRLKQAIEEEGGDPDNIELTVSTDXXXXXXXX 356
++DLRVIDL++EL++RN+D +G K+VL+ RLK+AIE+EGG+PD IE+T +
Sbjct: 31 LSDLRVIDLRAELRKRNVDSSGNKSVLMERLKKAIEDEGGNPDEIEITSEGNKKTSKRSS 90
Query: 357 XXXXXQE-------ADELSGDASVEDDAFVKDCELENQE 452
+E +E SGD +ED + + + + +
Sbjct: 91 KGRKPEEEGVEDNGLEENSGDGQIEDKETINNLDTSSSD 129
>ref|NP_001188268.1| scaffold attachment factor B1 isoform 2 [Homo sapiens].
Length = 916
Score = 67.8 bits (164), Expect = 2e-11
Identities = 30/48 (62%), Positives = 44/48 (91%)
Frame = +3
Query: 177 ITDLRVIDLKSELKRRNLDITGVKTVLVSRLKQAIEEEGGDPDNIELT 320
++DLRVIDL++EL++RN+D +G K+VL+ RLK+AIE+EGG+PD IE+T
Sbjct: 31 LSDLRVIDLRAELRKRNVDSSGNKSVLMERLKKAIEDEGGNPDEIEIT 78
>ref|NP_001188267.1| scaffold attachment factor B1 isoform 1 [Homo sapiens].
Length = 917
Score = 67.8 bits (164), Expect = 2e-11
Identities = 30/48 (62%), Positives = 44/48 (91%)
Frame = +3
Query: 177 ITDLRVIDLKSELKRRNLDITGVKTVLVSRLKQAIEEEGGDPDNIELT 320
++DLRVIDL++EL++RN+D +G K+VL+ RLK+AIE+EGG+PD IE+T
Sbjct: 31 LSDLRVIDLRAELRKRNVDSSGNKSVLMERLKKAIEDEGGNPDEIEIT 78
>ref|NP_002958.2| scaffold attachment factor B1 isoform 3 [Homo sapiens].
Length = 915
Score = 67.8 bits (164), Expect = 2e-11
Identities = 30/48 (62%), Positives = 44/48 (91%)
Frame = +3
Query: 177 ITDLRVIDLKSELKRRNLDITGVKTVLVSRLKQAIEEEGGDPDNIELT 320
++DLRVIDL++EL++RN+D +G K+VL+ RLK+AIE+EGG+PD IE+T
Sbjct: 31 LSDLRVIDLRAELRKRNVDSSGNKSVLMERLKKAIEDEGGNPDEIEIT 78
>ref|NP_055464.1| scaffold attachment factor B2 [Homo sapiens].
Length = 953
Score = 63.9 bits (154), Expect = 2e-10
Identities = 46/129 (35%), Positives = 69/129 (53%), Gaps = 24/129 (18%)
Frame = +3
Query: 177 ITDLRVIDLKSELKRRNLDITGVKTVLVSRLKQAIEEEGGDPD--NIELTVSTDXXXXXX 350
+++LRVIDL++ELK+RNLD G K+VL+ RLK+A++EEG DPD IEL ++
Sbjct: 30 LSELRVIDLRAELKKRNLDTGGNKSVLMERLKKAVKEEGQDPDEIGIELEATSKKSAKRC 89
Query: 351 XXXXXXXQEADELSG------------DASVE--------DDAFVKDCELENQEAHE--Q 464
+E E +G +AS+E D + + + E+ N A + +
Sbjct: 90 VKGLKMEEEGTEDNGLEDDSRDGQEDMEASLENLQNMGMMDMSVLDETEVANSSAPDFGE 149
Query: 465 DGNDELKDS 491
DG D L DS
Sbjct: 150 DGTDGLLDS 158
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 23,143,617
Number of extensions: 422696
Number of successful extensions: 1160
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 1157
Number of HSP's successfully gapped: 9
Length of query: 336
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 233
Effective length of database: 14,901,872
Effective search space: 3472136176
Effective search space used: 3472136176
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015213
(1008 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 589 e-165
>Sscrofa_Chr01
|| Length = 315321322
Score = 589 bits (297), Expect = e-165
Identities = 307/309 (99%), Gaps = 1/309 (0%)
Strand = Plus / Plus
Query: 701 agaagggaacctagctgaggctgatcacacagctcatgaagagatggaagctaattcgac 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125158387 agaagggaacctagctgaggctgatcacacagctcatgaagagatggaagctaattcgac 125158446
Query: 761 tgtgaaagaagctgaggatgacaacatctcggtcacaatccaggctgaagatgccatcac 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125158447 tgtgaaagaagctgaggatgacaacatctcggtcacaatccaggctgaagatgccatcac 125158506
Query: 821 tctggattttgatggtgatgacctcctagaaacaggtaaaaatgtgaaaattacagattc 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125158507 tctggattttgatggtgatgacctcctagaaacaggtaaaaatgtgaaaattacagattc 125158566
Query: 881 tgaagcaagtaagccaaaagatgggcaggacgtcattgcacagagcccggagaaagaaag 940
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 125158567 tgaagcaagtaagccaaaagatgggcaggacgtcattgcacagagcccggagaaggaaag 125158626
Query: 941 c-aggattatgagatgaatgcgaaccataaagatggtaagaaggaagactgcgtgaaggg 999
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125158627 caaggattatgagatgaatgcgaaccataaagatggtaagaaggaagactgcgtgaaggg 125158686
Query: 1000 tgatcctgt 1008
|||||||||
Sbjct: 125158687 tgatcctgt 125158695
Score = 547 bits (276), Expect = e-153
Identities = 276/276 (100%)
Strand = Plus / Plus
Query: 1 ttgtgcgcagcgctgcgcggcgccggctgccggcgaggcctgggtcgaagttggagctgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125132778 ttgtgcgcagcgctgcgcggcgccggctgccggcgaggcctgggtcgaagttggagctgc 125132837
Query: 61 tgccgccgccctgcagcccactggctgcctcggccgcgcgctgctcttctaaaatggctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125132838 tgccgccgccctgcagcccactggctgcctcggccgcgcgctgctcttctaaaatggctg 125132897
Query: 121 ccgccaccggtgctgtggcagcctcggctgcctccggtcaggcagaaggtaaaaagatca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125132898 ccgccaccggtgctgtggcagcctcggctgcctccggtcaggcagaaggtaaaaagatca 125132957
Query: 181 ccgatctgcgggtcatcgatctcaagtccgagctgaagcggcggaacttggatatcaccg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125132958 ccgatctgcgggtcatcgatctcaagtccgagctgaagcggcggaacttggatatcaccg 125133017
Query: 241 gagtcaagactgtgctcgtctcccgactcaagcagg 276
||||||||||||||||||||||||||||||||||||
Sbjct: 125133018 gagtcaagactgtgctcgtctcccgactcaagcagg 125133053
Score = 398 bits (201), Expect = e-108
Identities = 201/201 (100%)
Strand = Plus / Plus
Query: 426 aaggactgtgaattggagaatcaagaggcacatgaacaagatggaaatgatgaactaaag 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125146813 aaggactgtgaattggagaatcaagaggcacatgaacaagatggaaatgatgaactaaag 125146872
Query: 486 gactctgaagaatttggtgaaaatgaagaagaacatgtgcattccaaggagttactttct 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125146873 gactctgaagaatttggtgaaaatgaagaagaacatgtgcattccaaggagttactttct 125146932
Query: 546 gcagaagagaacaagagagctcatgaattaatagaggcagaagcaatagaagatatagag 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125146933 gcagaagagaacaagagagctcatgaattaatagaggcagaagcaatagaagatatagag 125146992
Query: 606 aaagaggacatcgaaagtcag 626
|||||||||||||||||||||
Sbjct: 125146993 aaagaggacatcgaaagtcag 125147013
Score = 182 bits (92), Expect = 2e-43
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 274 aggctattgaagaggaaggaggcgatccagataatattgaattaactgtttcaactgata 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125134020 aggctattgaagaggaaggaggcgatccagataatattgaattaactgtttcaactgata 125134079
Query: 334 ctccaaacaagaaaccaaccaaaggcaaaggt 365
||||||||||||||||||||||||||||||||
Sbjct: 125134080 ctccaaacaagaaaccaaccaaaggcaaaggt 125134111
Score = 135 bits (68), Expect = 5e-29
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 362 aggtaaaaaacaggaagcagatgagttgagtggagatgcttctgtggaagatgatgcttt 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125143606 aggtaaaaaacaggaagcagatgagttgagtggagatgcttctgtggaagatgatgcttt 125143665
Query: 422 tgtcaagg 429
||||||||
Sbjct: 125143666 tgtcaagg 125143673
Score = 101 bits (51), Expect = 7e-19
Identities = 51/51 (100%)
Strand = Plus / Plus
Query: 625 aggaaattgaagctcaagaaggtgaagatgatacctttctaacagcccaag 675
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125147876 aggaaattgaagctcaagaaggtgaagatgatacctttctaacagcccaag 125147926
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,743,360
Number of extensions: 299
Number of successful extensions: 299
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 298
Number of HSP's successfully gapped: 6
Length of query: 1008
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 987
Effective length of database: 2,808,413,156
Effective search space: 2771903784972
Effective search space used: 2771903784972
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)