Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-016473
(1036 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092619.1| cytochrome b ascorbate-dependent protein 3 [... 281 9e-77
Alignment gi|NP_001192978.1| cytochrome b reductase 1 [Bos taurus]. 158 6e-39
Alignment gi|XP_002685326.1| PREDICTED: cytochrome b reductase 1-like [Bo... 158 6e-39
Alignment gi|NP_777262.1| cytochrome b561 [Bos taurus]. 104 1e-22
>ref|NP_001092619.1| cytochrome b ascorbate-dependent protein 3 [Bos taurus].
Length = 265
Score = 281 bits (719), Expect(2) = 9e-77
Identities = 131/154 (85%), Positives = 138/154 (89%)
Frame = +3
Query: 540 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYS 719
MAVGWFYLS LAL SLGSMCIL TIYWMRYWH GFAWDG++L FNWHPVLMVTGMVVLYS
Sbjct: 1 MAVGWFYLSVLALCSLGSMCILFTIYWMRYWHGGFAWDGSMLMFNWHPVLMVTGMVVLYS 60
Query: 720 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWL 899
AASL YRLPQSWVGP+LPWK GHAAMHL+AF+LTVLGL AVF FHNH KIP+LYSLHSWL
Sbjct: 61 AASLVYRLPQSWVGPRLPWKSGHAAMHLLAFLLTVLGLHAVFEFHNHAKIPHLYSLHSWL 120
Query: 900 GITTVFLFRLQWVLGFVVFLLPWASVPLRSLLNP 1001
GITTVFLF QW LGF VFLLPWAS+ LRSLL P
Sbjct: 121 GITTVFLFACQWFLGFSVFLLPWASMWLRSLLKP 154
Score = 25.0 bits (53), Expect(2) = 9e-77
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +2
Query: 992 LKPIHVFFGPS 1024
LKPIHVFFG S
Sbjct: 152 LKPIHVFFGAS 162
>ref|NP_001192978.1| cytochrome b reductase 1 [Bos taurus].
Length = 285
Score = 158 bits (400), Expect = 6e-39
Identities = 76/151 (50%), Positives = 103/151 (68%)
Frame = +3
Query: 549 GWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYSAAS 728
G+ L AL +G + ++ T+ W+ + +G WDGT L FNWHPVL+VTG V + A
Sbjct: 8 GFLALLVSALL-VGFLSVIFTLIWVLHHREGLGWDGTALEFNWHPVLVVTGFVFILGIAI 66
Query: 729 LAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWLGIT 908
+ YRLP +W KL K HA ++ +A IL ++ L AVF+FHN +KIPN+YSLHSW+G+T
Sbjct: 67 IVYRLPWTWKCSKLLMKSIHAGLNTVAAILAIISLVAVFDFHNAKKIPNMYSLHSWVGLT 126
Query: 909 TVFLFRLQWVLGFVVFLLPWASVPLRSLLNP 1001
V L+ LQ +LGF VFLLPWA + LR+LL P
Sbjct: 127 AVILYILQLLLGFFVFLLPWAPLSLRALLMP 157
>ref|XP_002685326.1| PREDICTED: cytochrome b reductase 1-like [Bos taurus].
Length = 285
Score = 158 bits (400), Expect = 6e-39
Identities = 76/151 (50%), Positives = 103/151 (68%)
Frame = +3
Query: 549 GWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYSAAS 728
G+ L AL +G + ++ T+ W+ + +G WDGT L FNWHPVL+VTG V + A
Sbjct: 8 GFLALLVSALL-VGFLSVIFTLIWVLHHREGLGWDGTALEFNWHPVLVVTGFVFILGIAI 66
Query: 729 LAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWLGIT 908
+ YRLP +W KL K HA ++ +A IL ++ L AVF+FHN +KIPN+YSLHSW+G+T
Sbjct: 67 IVYRLPWTWKCSKLLMKSIHAGLNTVAAILAIISLVAVFDFHNAKKIPNMYSLHSWVGLT 126
Query: 909 TVFLFRLQWVLGFVVFLLPWASVPLRSLLNP 1001
V L+ LQ +LGF VFLLPWA + LR+LL P
Sbjct: 127 AVILYILQLLLGFFVFLLPWAPLSLRALLMP 157
>ref|NP_777262.1| cytochrome b561 [Bos taurus].
Length = 273
Score = 104 bits (259), Expect = 1e-22
Identities = 56/139 (40%), Positives = 78/139 (56%)
Frame = +3
Query: 585 LGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 764
LG + + T W+ + G AW+ L FN HP+ M+ G+V L A L YR+ ++
Sbjct: 45 LGLIVVAMTGAWLGMYRGGIAWESA-LQFNVHPLCMIIGLVFLQGDALLVYRVFRNEA-- 101
Query: 765 KLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWLGITTVFLFRLQWVLG 944
K K+ H +H+ AF++ ++GL AVF H + +LYSLHSW GI LF QW++G
Sbjct: 102 KRTTKVLHGLLHVFAFVIALVGLVAVFEHHRKKGYADLYSLHSWCGILVFALFFAQWLVG 161
Query: 945 FVVFLLPWASVPLRSLLNP 1001
F FL P AS LRS P
Sbjct: 162 FSFFLFPGASFSLRSRYRP 180
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,695,761
Number of extensions: 1338158
Number of successful extensions: 6476
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6453
Number of HSP's successfully gapped: 5
Length of query: 345
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 242
Effective length of database: 14,273,310
Effective search space: 3454141020
Effective search space used: 3454141020
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-016473
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-016473
(1036 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122687.1| PREDICTED: cytochrome b ascorbate-dependent ... 316 2e-87
Alignment gi|XP_003122686.1| PREDICTED: cytochrome b ascorbate-dependent ... 316 2e-87
Alignment gi|NP_001121924.1| cytochrome b reductase 1 [Sus scrofa]. 158 4e-39
Alignment gi|NP_001090991.1| cytochrome b561 [Sus scrofa]. 105 3e-23
>ref|XP_003122687.1| PREDICTED: cytochrome b ascorbate-dependent protein 3-like isoform 2
[Sus scrofa].
Length = 242
Score = 316 bits (809), Expect(2) = 2e-87
Identities = 149/154 (96%), Positives = 149/154 (96%)
Frame = +3
Query: 540 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYS 719
MAVGWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYS
Sbjct: 1 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYS 60
Query: 720 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWL 899
AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWL
Sbjct: 61 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWL 120
Query: 900 GITTVFLFRLQWVLGFVVFLLPWASVPLRSLLNP 1001
GITTVFLF QW LGFVVFLLPWASV LRSLL P
Sbjct: 121 GITTVFLFACQWFLGFVVFLLPWASVRLRSLLKP 154
Score = 25.0 bits (53), Expect(2) = 2e-87
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +2
Query: 992 LKPIHVFFGPS 1024
LKPIHVFFG S
Sbjct: 152 LKPIHVFFGAS 162
>ref|XP_003122686.1| PREDICTED: cytochrome b ascorbate-dependent protein 3-like isoform 1
[Sus scrofa].
Length = 242
Score = 316 bits (809), Expect(2) = 2e-87
Identities = 149/154 (96%), Positives = 149/154 (96%)
Frame = +3
Query: 540 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYS 719
MAVGWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYS
Sbjct: 1 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYS 60
Query: 720 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWL 899
AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWL
Sbjct: 61 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWL 120
Query: 900 GITTVFLFRLQWVLGFVVFLLPWASVPLRSLLNP 1001
GITTVFLF QW LGFVVFLLPWASV LRSLL P
Sbjct: 121 GITTVFLFACQWFLGFVVFLLPWASVRLRSLLKP 154
Score = 25.0 bits (53), Expect(2) = 2e-87
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +2
Query: 992 LKPIHVFFGPS 1024
LKPIHVFFG S
Sbjct: 152 LKPIHVFFGAS 162
>ref|NP_001121924.1| cytochrome b reductase 1 [Sus scrofa].
Length = 285
Score = 158 bits (400), Expect = 4e-39
Iden
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-016473
(1036 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540920.2| PREDICTED: similar to cytochrome b, ascorbate d... 250 4e-67
Alignment gi|XP_535960.2| PREDICTED: similar to cytochrome b reductase 1 ... 152 5e-37
Alignment gi|XP_853258.1| PREDICTED: similar to Cytochrome b561 (Cytochro... 107 2e-23
>ref|XP_540920.2| PREDICTED: similar to cytochrome b, ascorbate dependent 3 protein
[Canis familiaris].
Length = 242
Score = 250 bits (639), Expect(2) = 4e-67
Identities = 116/154 (75%), Positives = 127/154 (82%)
Frame = +3
Query: 540 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYS 719
MAVGWFYLS +L+ LG MCI+ TIYW++ WH GFAWDGT+L FN+HPV MV G VVLYS
Sbjct: 1 MAVGWFYLSFYSLWFLGLMCIILTIYWVQLWHGGFAWDGTLLMFNYHPVFMVVGSVVLYS 60
Query: 720 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWL 899
AASL YRLPQSWVGPKLPWK+GHA +HL+AFILTVLGL AVF H +I NLYSLHSWL
Sbjct: 61 AASLLYRLPQSWVGPKLPWKIGHAMLHLLAFILTVLGLVAVFQLHRRSRITNLYSLHSWL 120
Query: 900 GITTVFLFRLQWVLGFVVFLLPWASVPLRSLLNP 1001
GI TVFLF QW LGFVVFLLPW SV LRSLL P
Sbjct: 121 GIVTVFLFACQWFLGFVVFLLPWMSVWLRSLLKP 154
Score = 23.9 bits (50), Expect(2) = 4e-67
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +2
Query: 992 LKPIHVFFG 1018
LKPIHVFFG
Sbjct: 152 LKPIHVFFG 160
>ref|XP_535960.2| PREDICTED: similar to cytochrome b reductase 1 [Canis familiaris].
Length = 280
Score = 152 bits (384), Expect = 5e-37
Identities = 67/139 (48%), Positives = 96/139 (69%)
Frame = +3
Query: 585 LGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 764
+G + ++ ++ W+ ++ +G WDGT L FNWHPV MVTG V + A + YRLP +W
Sbjct: 17 VGFLAVVFSLVWVLHYREGLGWDGTALEFNWHPVFMVTGFVFIQGIAIIVYRLPWTWKCS 76
Query: 765 KLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWLGITTVFLFRLQWVLG 944
KL K HA +H +A IL ++ L +VF++HN IPN+YSLHSW+G+T V L+ LQ +LG
Sbjct: 77 KLLMKSIHAGLHTVAAILVIISLVSVFDYHNAGNIPNMYSLHSWVGLTVVILYILQLLLG 136
Query: 945 FVVFLLPWASVPLRSLLNP 1001
+VFLLPWA + LR+L+ P
Sbjct: 137 VLVFLLPWAPLSLRALVMP 155
>ref|XP_853258.1| PREDICTED: similar to Cytochrome b561 (Cytochrome b-561) [Canis
familiaris].
Length = 252
Score = 107 bits (267), Expect = 2e-23
Identities = 56/139 (40%), Positives = 81/139 (58%)
Frame = +3
Query: 585 LGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 764
LG + T W+ + G AW+G L FN HP+ MV G++ L A L YR+ ++
Sbjct: 24 LGLTVVAMTGAWLGLYRGGIAWEGA-LQFNVHPLCMVIGLIFLQGDALLVYRVFRNEA-- 80
Query: 765 KLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWLGITTVFLFRLQWVLG 944
K K+ H +H++A I+ ++GL AVF++H + +LYSLHSW GI L+ +QW++G
Sbjct: 81 KRTTKVLHGLLHVLALIIALVGLVAVFDYHRQKGYADLYSLHSWCGILVFVLYFMQWLVG 140
Query: 945 FVVFLLPWASVPLRSLLNP 1001
F tities = 75/151 (49%), Positives = 102/151 (67%)
Frame = +3
Query: 549 GWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYSAAS 728
G+ L AL +G + ++ T+ W+ ++ +G WDGT L FNWHPVL+VTG V + A
Sbjct: 8 GFLALLVSALL-VGFLSVIFTLIWVLHYREGLGWDGTALEFNWHPVLIVTGFVFIQGIAI 66
Query: 729 LAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWLGIT 908
+ YRLP +W KL K HA ++ +A IL ++ L AVF+FHN KIPN+YSLHSW+G+
Sbjct: 67 IVYRLPWTWKCSKLLMKSIHAGLNTVAAILAIISLVAVFDFHNARKIPNMYSLHSWVGLA 126
Query: 909 TVFLFRLQWVLGFVVFLLPWASVPLRSLLNP 1001
V L+ LQ +LGF VFLLPWA + LR+LL P
Sbjct: 127 AVILYMLQLLLGFFVFLLPWAPLSLRALLMP 157
>ref|NP_001090991.1| cytochrome b561 [Sus scrofa].
Length = 252
Score = 105 bits (263), Expect = 3e-23
Identities = 56/139 (40%), Positives = 80/139 (57%)
Frame = +3
Query: 585 LGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 764
LG + T W+ + G AW+ L FN HP+ M+ G+V L A L YR+ ++
Sbjct: 24 LGLTVVAVTGAWLGAYRGGIAWESA-LQFNVHPLCMIIGLVFLQGDALLVYRVFRNEA-- 80
Query: 765 KLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWLGITTVFLFRLQWVLG 944
K K+ H +H++AF++ ++GL AVF++H + I +LYSLHSW GI LF QW++G
Sbjct: 81 KRTTKILHGLLHVLAFVIALVGLVAVFDYHRKKGIADLYSLHSWCGILVFVLFLAQWLVG 140
Query: 945 FVVFLLPWASVPLRSLLNP 1001
FL P AS LRS P
Sbjct: 141 LGFFLFPGASFSLRSRYRP 159
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,362,683
Number of extensions: 882330
Number of successful extensions: 4116
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4099
Number of HSP's successfully gapped: 6
Length of query: 345
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 245
Effective length of database: 8,854,232
Effective search space: 2169286840
Effective search space used: 2169286840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
FL P AS LRS P
Sbjct: 141 FSFFLFPGASFSLRSRYRP 159
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,354,544
Number of extensions: 1357580
Number of successful extensions: 6488
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6448
Number of HSP's successfully gapped: 4
Length of query: 345
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 241
Effective length of database: 15,407,560
Effective search space: 3713221960
Effective search space used: 3713221960
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-016473
(1036 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_958739.1| cytochrome b ascorbate-dependent protein 3 [Mus... 252 2e-67
Alignment gi|NP_082869.2| cytochrome b reductase 1 [Mus musculus]. 140 2e-33
Alignment gi|NP_031831.2| cytochrome b561 [Mus musculus]. 106 3e-23
>ref|NP_958739.1| cytochrome b ascorbate-dependent protein 3 [Mus musculus].
Length = 242
Score = 252 bits (643), Expect(2) = 2e-67
Identities = 116/154 (75%), Positives = 126/154 (81%)
Frame = +3
Query: 540 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYS 719
MA GWFYLS + L SLGSMCIL T YWM+YW GFAWDGT+L FNWHPVLMV GMVVLY
Sbjct: 1 MASGWFYLSCMVLGSLGSMCILFTAYWMQYWRGGFAWDGTVLMFNWHPVLMVAGMVVLYG 60
Query: 720 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWL 899
AASL YRLP SWVGP+LPWK+ HAA+HL+AF TV+GL AVF FHNH +I +LYSLHSWL
Sbjct: 61 AASLVYRLPSSWVGPRLPWKVLHAALHLLAFTCTVVGLIAVFRFHNHSRIAHLYSLHSWL 120
Query: 900 GITTVFLFRLQWVLGFVVFLLPWASVPLRSLLNP 1001
GITTV LF QW LGF VFLLPWAS LRSLL P
Sbjct: 121 GITTVVLFACQWFLGFAVFLLPWASQWLRSLLKP 154
Score = 23.1 bits (48), Expect(2) = 2e-67
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +2
Query: 992 LKPIHVFFG 1018
LKP+HVFFG
Sbjct: 152 LKPLHVFFG 160
>ref|NP_082869.2| cytochrome b reductase 1 [Mus musculus].
Length = 290
Score = 140 bits (353), Expect = 2e-33
Identities = 61/139 (43%), Positives = 94/139 (67%)
Frame = +3
Query: 585 LGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 764
+G + ++ + W+ ++ +G W+G+ L FNWHPVL VTG V + A + YRLP +W
Sbjct: 19 VGFLSVIFVLIWVLHFREGLGWNGSGLEFNWHPVLAVTGFVFIQGIAIIVYRLPWTWKCS 78
Query: 765 KLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWLGITTVFLFRLQWVLG 944
KL K HA ++ +A IL ++ + AVF +HN +K+P++YSLHSW+G+T + L+ Q V+G
Sbjct: 79 KLLMKSIHAGLNAVAAILAIISVVAVFEYHNVQKVPHMYSLHSWVGLTALILYIQQLVVG 138
Query: 945 FVVFLLPWASVPLRSLLNP 1001
F VFLLPWA LR+++ P
Sbjct: 139 FFVFLLPWAPPSLRAIVMP 157
>ref|NP_031831.2| cytochrome b561 [Mus musculus].
Length = 250
Score = 106 bits (265), Expect = 3e-23
Identities = 57/139 (41%), Positives = 80/139 (57%)
Frame = +3
Query: 585 LGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 764
LG + T W+ + G AW+ + L FN HP+ MV GM+ L A L YR+ +
Sbjct: 22 LGLTVVAVTGAWLGLYRGGIAWESS-LQFNVHPLCMVIGMIFLQGDALLVYRVFRREA-- 78
Query: 765 KLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWLGITTVFLFRLQWVLG 944
K K+ H +H+ AFI+ ++GL AVF++H + +LYSLHSW GI L+ +QW++G
Sbjct: 79 KRTTKILHGLLHVFAFIIALVGLVAVFDYHKKKGYADLYSLHSWCGILVFVLYFVQWLVG 138
Query: 945 FVVFLLPWASVPLRSLLNP 1001
F FL P AS LRS P
Sbjct: 139 FSFFLFPGASFSLRSRYRP 157
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,535,485
Number of extensions: 1095998
Number of successful extensions: 4894
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4876
Number of HSP's successfully gapped: 4
Length of query: 345
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 243
Effective length of database: 12,553,887
Effective search space: 3050594541
Effective search space used: 3050594541
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-016473
(1036 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001154926.1| cytochrome b ascorbate-dependent protein 3 i... 261 3e-70
Alignment gi|NP_001154924.1| cytochrome b ascorbate-dependent protein 3 i... 251 2e-67
Alignment gi|NP_705839.3| cytochrome b ascorbate-dependent protein 3 isof... 251 2e-67
Alignment gi|NP_079119.3| cytochrome b reductase 1 isoform 1 [Homo sapien... 140 1e-33
Alignment gi|NP_001017916.1| cytochrome b561 [Homo sapiens]. 103 3e-22
Alignment gi|NP_001017917.1| cytochrome b561 [Homo sapiens]. 103 3e-22
Alignment gi|NP_001906.3| cytochrome b561 [Homo sapiens]. 103 3e-22
Alignment gi|NP_001120855.1| cytochrome b reductase 1 isoform 2 [Homo sap... 60 3e-09
>ref|NP_001154926.1| cytochrome b ascorbate-dependent protein 3 isoform 1 [Homo sapiens].
Length = 259
Score = 261 bits (666), Expect(2) = 3e-70
Identities = 122/159 (76%), Positives = 131/159 (82%)
Frame = +3
Query: 525 ECLIRMAVGWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGM 704
EC+IRM G FYLS L L SLGSMCIL TIYWM+YW GFAW+G+I FNWHPVLMV GM
Sbjct: 13 ECVIRMVSGRFYLSCLLLGSLGSMCILFTIYWMQYWRGGFAWNGSIYMFNWHPVLMVAGM 72
Query: 705 VVLYSAASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYS 884
VV Y ASL YRLPQSWVGPKLPWKL HAA+HLMAF+LTV+GL AVF FHNH + NLYS
Sbjct: 73 VVFYGGASLVYRLPQSWVGPKLPWKLLHAALHLMAFVLTVVGLVAVFTFHNHGRTANLYS 132
Query: 885 LHSWLGITTVFLFRLQWVLGFVVFLLPWASVPLRSLLNP 1001
LHSWLGITTVFLF QW LGF VFLLPWAS+ LRSLL P
Sbjct: 133 LHSWLGITTVFLFACQWFLGFAVFLLPWASMWLRSLLKP 171
Score = 23.9 bits (50), Expect(2) = 3e-70
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +2
Query: 992 LKPIHVFFG 1018
LKPIHVFFG
Sbjct: 169 LKPIHVFFG 177
>ref|NP_001154924.1| cytochrome b ascorbate-dependent protein 3 isoform 2 [Homo sapiens].
Length = 242
Score = 251 bits (642), Expect(2) = 2e-67
Identities = 118/154 (76%), Positives = 126/154 (81%)
Frame = +3
Query: 540 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYS 719
M G FYLS L L SLGSMCIL TIYWM+YW GFAW+G+I FNWHPVLMV GMVV Y
Sbjct: 1 MVSGRFYLSCLLLGSLGSMCILFTIYWMQYWRGGFAWNGSIYMFNWHPVLMVAGMVVFYG 60
Query: 720 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWL 899
ASL YRLPQSWVGPKLPWKL HAA+HLMAF+LTV+GL AVF FHNH + NLYSLHSWL
Sbjct: 61 GASLVYRLPQSWVGPKLPWKLLHAALHLMAFVLTVVGLVAVFTFHNHGRTANLYSLHSWL 120
Query: 900 GITTVFLFRLQWVLGFVVFLLPWASVPLRSLLNP 1001
GITTVFLF QW LGF VFLLPWAS+ LRSLL P
Sbjct: 121 GITTVFLFACQWFLGFAVFLLPWASMWLRSLLKP 154
Score = 23.9 bits (50), Expect(2) = 2e-67
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +2
Query: 992 LKPIHVFFG 1018
LKPIHVFFG
Sbjct: 152 LKPIHVFFG 160
>ref|NP_705839.3| cytochrome b ascorbate-dependent protein 3 isoform 2 [Homo sapiens].
Length = 242
Score = 251 bits (642), Expect(2) = 2e-67
Identities = 118/154 (76%), Positives = 126/154 (81%)
Frame = +3
Query: 540 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYS 719
M G FYLS L L SLGSMCIL TIYWM+YW GFAW+G+I FNWHPVLMV GMVV Y
Sbjct: 1 MVSGRFYLSCLLLGSLGSMCILFTIYWMQYWRGGFAWNGSIYMFNWHPVLMVAGMVVFYG 60
Query: 720 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWL 899
ASL YRLPQSWVGPKLPWKL HAA+HLMAF+LTV+GL AVF FHNH + NLYSLHSWL
Sbjct: 61 GASLVYRLPQSWVGPKLPWKLLHAALHLMAFVLTVVGLVAVFTFHNHGRTANLYSLHSWL 120
Query: 900 GITTVFLFRLQWVLGFVVFLLPWASVPLRSLLNP 1001
GITTVFLF QW LGF VFLLPWAS+ LRSLL P
Sbjct: 121 GITTVFLFACQWFLGFAVFLLPWASMWLRSLLKP 154
Score = 23.9 bits (50), Expect(2) = 2e-67
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +2
Query: 992 LKPIHVFFG 1018
LKPIHVFFG
Sbjct: 152 LKPIHVFFG 160
>ref|NP_079119.3| cytochrome b reductase 1 isoform 1 [Homo sapiens].
Length = 286
Score = 140 bits (354), Expect = 1e-33
Identities = 66/151 (43%), Positives = 95/151 (62%), Gaps = 1/151 (0%)
Frame = +3
Query: 552 WFYLSAL-ALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYSAAS 728
W +L+ L + +G + ++ + W+ ++ +G WDG+ L FNWHPVLMVTG V + A
Sbjct: 7 WRFLALLGSALLVGFLSVIFALVWVLHYREGLGWDGSALEFNWHPVLMVTGFVFIQGIAI 66
Query: 729 LAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWLGIT 908
+ YRLP +W KL K HA ++ +A IL ++ + AVF HN I N+YSLHSW+G+
Sbjct: 67 IVYRLPWTWKCSKLLMKSIHAGLNAVAAILAIISVVAVFENHNVNNIANMYSLHSWVGLI 126
Query: 909 TVFLFRLQWVLGFVVFLLPWASVPLRSLLNP 1001
V + LQ + GF VFLLPWA + LR+ L P
Sbjct: 127 AVICYLLQLLSGFSVFLLPWAPLSLRAFLMP 157
>ref|NP_001017916.1| cytochrome b561 [Homo sapiens].
Length = 251
Score = 103 bits (256), Expect = 3e-22
Identities = 54/139 (38%), Positives = 79/139 (56%)
Frame = +3
Query: 585 LGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 764
LG + T W+ + G AW+ L FN HP+ MV G++ L A L YR+ ++
Sbjct: 23 LGLTLVAMTGAWLGLYRGGIAWESD-LQFNAHPLCMVIGLIFLQGNALLVYRVFRNEA-- 79
Query: 765 KLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWLGITTVFLFRLQWVLG 944
K K+ H +H+ A ++ ++GL AVF++H + +LYSLHSW GI L+ +QW++G
Sbjct: 80 KRTTKVLHGLLHIFALVIALVGLVAVFDYHRKKGYADLYSLHSWCGILVFVLYFVQWLVG 139
Query: 945 FVVFLLPWASVPLRSLLNP 1001
F FL P AS LRS P
Sbjct: 140 FSFFLFPGASFSLRSRYRP 158
>ref|NP_001017917.1| cytochrome b561 [Homo sapiens].
Length = 251
Score = 103 bits (256), Expect = 3e-22
Identities = 54/139 (38%), Positives = 79/139 (56%)
Frame = +3
Query: 585 LGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 764
LG + T W+ + G AW+ L FN HP+ MV G++ L A L YR+ ++
Sbjct: 23 LGLTLVAMTGAWLGLYRGGIAWESD-LQFNAHPLCMVIGLIFLQGNALLVYRVFRNEA-- 79
Query: 765 KLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWLGITTVFLFRLQWVLG 944
K K+ H +H+ A ++ ++GL AVF++H + +LYSLHSW GI L+ +QW++G
Sbjct: 80 KRTTKVLHGLLHIFALVIALVGLVAVFDYHRKKGYADLYSLHSWCGILVFVLYFVQWLVG 139
Query: 945 FVVFLLPWASVPLRSLLNP 1001
F FL P AS LRS P
Sbjct: 140 FSFFLFPGASFSLRSRYRP 158
>ref|NP_001906.3| cytochrome b561 [Homo sapiens].
Length = 251
Score = 103 bits (256), Expect = 3e-22
Identities = 54/139 (38%), Positives = 79/139 (56%)
Frame = +3
Query: 585 LGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 764
LG + T W+ + G AW+ L FN HP+ MV G++ L A L YR+ ++
Sbjct: 23 LGLTLVAMTGAWLGLYRGGIAWESD-LQFNAHPLCMVIGLIFLQGNALLVYRVFRNEA-- 79
Query: 765 KLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWLGITTVFLFRLQWVLG 944
K K+ H +H+ A ++ ++GL AVF++H + +LYSLHSW GI L+ +QW++G
Sbjct: 80 KRTTKVLHGLLHIFALVIALVGLVAVFDYHRKKGYADLYSLHSWCGILVFVLYFVQWLVG 139
Query: 945 FVVFLLPWASVPLRSLLNP 1001
F FL P AS LRS P
Sbjct: 140 FSFFLFPGASFSLRSRYRP 158
>ref|NP_001120855.1| cytochrome b reductase 1 isoform 2 [Homo sapiens].
Length = 157
Score = 60.5 bits (145), Expect = 3e-09
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Frame = +3
Query: 552 WFYLSAL-ALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYSAAS 728
W +L+ L + +G + ++ + W+ ++ +G WDG+ L FNWHPVLMVTG V + AS
Sbjct: 7 WRFLALLGSALLVGFLSVIFALVWVLHYREGLGWDGSALEFNWHPVLMVTGFVFIQGIAS 66
Query: 729 LAYRLPQSWVGPKLPWKLGHA 791
+ + +G + HA
Sbjct: 67 FRFFSLSASMGSAFSPSISHA 87
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,504,437
Number of extensions: 1326201
Number of successful extensions: 6358
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 6339
Number of HSP's successfully gapped: 11
Length of query: 345
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 242
Effective length of database: 14,901,872
Effective search space: 3606253024
Effective search space used: 3606253024
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-016473
(1036 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 406 e-111
>Sscrofa_Chr02
|| Length = 162569375
Score = 406 bits (205), Expect = e-111
Identities = 205/205 (100%)
Strand = Plus / Plus
Query: 519 aggagcgagtgcctgatcagaatggctgtgggatggttttacctgtcggccctggcgctg 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9694957 aggagcgagtgcctgatcagaatggctgtgggatggttttacctgtcggccctggcgctg 9695016
Query: 579 ttctccctgggctccatgtgcatcctctccaccatctattggatgcggtactggcacaaa 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9695017 ttctccctgggctccatgtgcatcctctccaccatctattggatgcggtactggcacaaa 9695076
Query: 639 ggctttgcctgggatggcaccatactcacgttcaactggcacccggtgctcatggtgact 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9695077 ggctttgcctgggatggcaccatactcacgttcaactggcacccggtgctcatggtgact 9695136
Query: 699 ggcatggtggtgctctacagtgctg 723
|||||||||||||||||||||||||
Sbjct: 9695137 ggcatggtggtgctctacagtgctg 9695161
Score = 396 bits (200), Expect = e-108
Identities = 200/200 (100%)
Strand = Plus / Plus
Query: 723 gcgtcgctggcgtaccgcctgccccagtcatgggtagggcccaagctgccctggaagttg 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9700219 gcgtcgctggcgtaccgcctgccccagtcatgggtagggcccaagctgccctggaagttg 9700278
Query: 783 ggccacgcagccatgcacctgatggccttcatcctgactgtgctggggctggcggccgtc 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9700279 ggccacgcagccatgcacctgatggccttcatcctgactgtgctggggctggcggccgtc 9700338
Query: 843 tttaactttcacaaccacgagaagatccccaacctctactccctgcacagctggctgggc 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9700339 tttaactttcacaaccacgagaagatccccaacctctactccctgcacagctggctgggc 9700398
Query: 903 atcaccaccgtcttcctctt 922
||||||||||||||||||||
Sbjct: 9700399 atcaccaccgtcttcctctt 9700418
Score = 246 bits (124), Expect = 2e-62
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 163 ggtggtggtttttaagtacggaagggcccttggttccaccggaggaatctgccgtgggtc 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9690278 ggtggtggtttttaagtacggaagggcccttggttccaccggaggaatctgccgtgggtc 9690337
Query: 223 cccgagttcctggagctgtcttccgtatacctgagtcagaccagagcacagtccgaaggg 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9690338 cccgagttcctggagctgtcttccgtatacctgagtcagaccagagcacagtccgaaggg 9690397
Query: 283 cggg 286
||||
Sbjct: 9690398 cggg 9690401
Score = 230 bits (116), Expect = 1e-57
Identities = 125/128 (97%)
Strand = Plus / Plus
Query: 285 ggcaggagggctcatctgtgtactgtgtgcagtaaaacattccagccatctgtcaggaaa 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9691614 ggcaggagggctcatctgtgtactgtgtgcagtaaaacattccagccatctgtcaggaaa 9691673
Query: 345 gtgttcccactatggatttcaagtctgtctcaaagcagcagtccaggaccaggacctctt 404
|||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||
Sbjct: 9691674 gtgttcccactatggatttcaagtctgtctcagagcaacagtccaagaccaggacctctt 9691733
Query: 405 ctagggag 412
||||||||
Sbjct: 9691734 ctagggag 9691741
Score = 212 bits (107), Expect = 3e-52
Identities = 110/111 (99%)
Strand = Plus / Plus
Query: 411 agatgagaagactgagtcctacaaacattaaatgattttctcaagcagcctcagtgcata 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9693334 agatgagaagactgagtcctacaaacattaaatgattttctcaagcagcctcagtgcata 9693393
Query: 471 agaattggggtccaggccaccactccgtcagcctgcctctaggtgtgaagg 521
||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 9693394 agaattggggtccagaccaccactccgtcagcctgcctctaggtgtgaagg 9693444
Score = 174 bits (88), Expect = 6e-41
Identities = 94/96 (97%)
Strand = Plus / Plus
Query: 71 tctgggactctcgggagctgcggctccggcgccaggtggcaagacgcgggtctcggagac 130
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 9690032 tctgggaccctcgggagcggcggctccggcgccaggtggcaagacgcgggtctcggagac 9690091
Query: 131 gccagcctccgtgcatcccactgtggttcgggggtg 166
||||||||||||||||||||||||||||||||||||
Sbjct: 9690092 gccagcctccgtgcatcccactgtggttcgggggtg 9690127
Score = 163 bits (82), Expect = 2e-37
Identities = 105/110 (95%), Gaps = 2/110 (1%)
Strand = Plus / Plus
Query: 929 gcagtgggtcttgggctttgtggtctttctgctgccctgggcgtctgtgccgctgcgcag 988
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 9701372 gcagtggttcttgggctttgtggtctttctgctgccctgggcgtctgtgcggctgcgcag 9701431
Query: 989 cct-cttaaacccatccacgtcttctttggaccct-cattctctctctgg 1036
||| ||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 9701432 cctccttaaacccatccacgtcttctttggagcctccattctctctctgg 9701481
Score = 85.7 bits (43), Expect = 4e-14
Identities = 46/47 (97%)
Strand = Plus / Plus
Query: 1 tagaaggcagtggctgcaggtggctgtcggtttaagcagttgcgtgc 47
||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 9689968 tagaaggcagtggctgctggtggctgtcggtttaagcagttgcgtgc 9690014
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,275,362
Number of extensions: 153
Number of successful extensions: 153
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 8
Length of query: 1036
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1015
Effective length of database: 2,808,413,156
Effective search space: 2850539353340
Effective search space used: 2850539353340
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)