Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601S-064045
(1173 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002699032.1| PREDICTED: tropomyosin 4-like [Bos taurus]. 81 2e-15
Alignment gi|XP_589950.1| PREDICTED: tropomyosin 4 isoform 1 [Bos taurus]. 81 2e-15
Alignment gi|XP_002688135.1| PREDICTED: tropomyosin 4-like [Bos taurus]. 68 1e-11
Alignment gi|XP_874820.3| PREDICTED: tropomyosin 4 isoform 2 [Bos taurus]. 68 1e-11
Alignment gi|XP_002688284.1| PREDICTED: tropomyosin 4-like [Bos taurus]. 67 4e-11
Alignment gi|XP_001250860.3| PREDICTED: tropomyosin 4 [Bos taurus]. 67 4e-11
Alignment gi|XP_001252597.2| PREDICTED: tropomyosin 4 [Bos taurus]. 67 4e-11
>ref|XP_002699032.1| PREDICTED: tropomyosin 4-like [Bos taurus].
Length = 248
Score = 81.3 bits (199), Expect = 2e-15
Identities = 44/83 (53%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+A++RA L RE++G VA L RRIQL +
Sbjct: 1 MAGIPTIEAVKRKIQVLQQQADDAQERAERLQREVEGEGRAREQAEAEVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|XP_589950.1| PREDICTED: tropomyosin 4 isoform 1 [Bos taurus].
Length = 248
Score = 81.3 bits (199), Expect = 2e-15
Identities = 44/83 (53%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+A++RA L RE++G VA L RRIQL +
Sbjct: 1 MAGIPTIEAVKRKIQVLQQQADDAQERAERLQREVEGEGRAREQAEAEVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|XP_002688135.1| PREDICTED: tropomyosin 4-like [Bos taurus].
Length = 248
Score = 68.2 bits (165), Expect = 1e-11
Identities = 39/83 (46%), Positives = 51/83 (61%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MA + EA+K KIQVLQQQAD+AE+RA L +++DG V L RRIQL +
Sbjct: 1 MAAIAVTEAMKCKIQVLQQQADDAEERAKRLQQKVDGERWAREQAEAEVVSLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+L+ A ERLAT L ++ A
Sbjct: 61 EELNRAQERLATALQKLEEAEKA 83
>ref|XP_874820.3| PREDICTED: tropomyosin 4 isoform 2 [Bos taurus].
Length = 248
Score = 68.2 bits (165), Expect = 1e-11
Identities = 39/83 (46%), Positives = 51/83 (61%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MA + EA+K KIQVLQQQAD+AE+RA L +++DG V L RRIQL +
Sbjct: 1 MAAIAVTEAMKCKIQVLQQQADDAEERAKRLQQKVDGERWAREQAEAEVVSLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+L+ A ERLAT L ++ A
Sbjct: 61 EELNRAQERLATALQKLEEAEKA 83
>ref|XP_002688284.1| PREDICTED: tropomyosin 4-like [Bos taurus].
Length = 248
Score = 66.6 bits (161), Expect = 4e-11
Identities = 38/83 (45%), Positives = 51/83 (61%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MA + EA+K KIQVLQQQAD+AE+RA L ++++G V L RRIQL +
Sbjct: 1 MAAIAVTEAMKCKIQVLQQQADDAEERAKCLQQKVEGERWAREQAEAEVVSLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+L+ A ERLAT L ++ A
Sbjct: 61 EELNRAQERLATELQKLEEAEKA 83
>ref|XP_001250860.3| PREDICTED: tropomyosin 4 [Bos taurus].
Length = 248
Score = 66.6 bits (161), Expect = 4e-11
Identities = 38/83 (45%), Positives = 51/83 (61%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MA + EA+K KIQVLQQQAD+AE+RA L ++++G V L RRIQL +
Sbjct: 1 MAAIAVTEAMKCKIQVLQQQADDAEERAKCLQQKVEGERWAREQAEAEVVSLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+L+ A ERLAT L ++ A
Sbjct: 61 EELNRAQERLATELQKLEEAEKA 83
>ref|XP_001252597.2| PREDICTED: tropomyosin 4 [Bos taurus].
Length = 248
Score = 66.6 bits (161), Expect = 4e-11
Identities = 38/83 (45%), Positives = 51/83 (61%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MA + EA+K KIQVLQQQAD+AE+RA L ++++G V L RRIQL +
Sbjct: 1 MAAIAVTEAMKCKIQVLQQQADDAEERAKCLQQKVEGERWAREQAEAEVVSLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+L+ A ERLAT L ++ A
Sbjct: 61 EELNRAQERLATELQKLEEAEKA 83
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 29,586,463
Number of extensions: 672938
Number of successful extensions: 1737
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 1737
Number of HSP's successfully gapped: 7
Length of query: 391
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 287
Effective length of database: 14,240,222
Effective search space: 4086943714
Effective search space used: 4086943714
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601S-064045
(1173 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_864548.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 83 4e-16
Alignment gi|XP_864532.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 83 4e-16
Alignment gi|XP_541810.2| PREDICTED: similar to tropomyosin 3 isoform 2 i... 83 4e-16
Alignment gi|XP_865919.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 83 4e-16
Alignment gi|XP_865907.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 83 4e-16
Alignment gi|XP_865893.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 83 4e-16
Alignment gi|XP_865876.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 83 4e-16
Alignment gi|XP_865836.1| PREDICTED: similar to tropomyosin 3, gamma isof... 83 4e-16
Alignment gi|XP_865820.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 83 4e-16
Alignment gi|XP_865805.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 83 4e-16
>ref|XP_864548.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 6 [Canis
familiaris].
Length = 160
Score = 83.2 bits (204), Expect = 4e-16
Identities = 45/83 (54%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+AE+RA L RE++G VA L RRIQL +
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|XP_864532.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 5 [Canis
familiaris].
Length = 232
Score = 83.2 bits (204), Expect = 4e-16
Identities = 45/83 (54%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+AE+RA L RE++G VA L RRIQL +
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|XP_541810.2| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 2 [Canis
familiaris].
Length = 248
Score = 83.2 bits (204), Expect = 4e-16
Identities = 45/83 (54%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+AE+RA L RE++G VA L RRIQL +
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|XP_865919.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 25 [Canis
familiaris].
Length = 248
Score = 83.2 bits (204), Expect = 4e-16
Identities = 45/83 (54%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+AE+RA L RE++G VA L RRIQL +
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|XP_865907.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 24 [Canis
familiaris].
Length = 248
Score = 83.2 bits (204), Expect = 4e-16
Identities = 45/83 (54%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+AE+RA L RE++G VA L RRIQL +
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|XP_865893.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 23 [Canis
familiaris].
Length = 243
Score = 83.2 bits (204), Expect = 4e-16
Identities = 45/83 (54%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+AE+RA L RE++G VA L RRIQL +
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|XP_865876.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 22 [Canis
familiaris].
Length = 224
Score = 83.2 bits (204), Expect = 4e-16
Identities = 45/83 (54%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+AE+RA L RE++G VA L RRIQL +
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|XP_865836.1| PREDICTED: similar to tropomyosin 3, gamma isoform 19 [Canis
familiaris].
Length = 248
Score = 83.2 bits (204), Expect = 4e-16
Identities = 45/83 (54%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+AE+RA L RE++G VA L RRIQL +
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|XP_865820.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 18 [Canis
familiaris].
Length = 227
Score = 83.2 bits (204), Expect = 4e-16
Identities = 45/83 (54%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+AE+RA L RE++G VA L RRIQL +
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|XP_865805.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 17 [Canis
familiaris].
Length = 248
Score = 83.2 bits (204), Expect = 4e-16
Identities = 45/83 (54%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+AE+RA L RE++G VA L RRIQL +
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 30,586,329
Number of extensions: 619111
Number of successful extensions: 1903
Number of sequences better than 1.0e-05: 30
Number of HSP's gapped: 1896
Number of HSP's successfully gapped: 30
Length of query: 391
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 286
Effective length of database: 15,374,224
Effective search space: 4397028064
Effective search space used: 4397028064
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601S-064045
(1173 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999500.1| tropomyosin alpha-4 chain [Sus scrofa]. 95 7e-20
Alignment gi|NP_001001632.1| tropomyosin alpha-3 chain [Sus scrofa]. 83 3e-16
>ref|NP_999500.1| tropomyosin alpha-4 chain [Sus scrofa].
Length = 248
Score = 95.1 bits (235), Expect = 7e-20
Identities = 53/83 (63%), Positives = 57/83 (68%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAGLNSLEAVKRKIQ LQQQADEAEDRA GL RELDG VA L RRIQL +
Sbjct: 1 MAGLNSLEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|NP_001001632.1| tropomyosin alpha-3 chain [Sus scrofa].
Length = 248
Score = 83.2 bits (204), Expect = 3e-16
Identities = 45/83 (54%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+AE+RA L RE++G VA L RRIQL +
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,713,230
Number of extensions: 542543
Number of successful extensions: 1047
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1047
Number of HSP's successfully gapped: 2
Length of query: 391
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 290
Effective length of database: 8,829,335
Effective search space: 2560507150
Effective search space used: 2560507150
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601S-064045
(1173 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003281.1| tropomyosin alpha-4 chain isoform 2 [Homo sapie... 95 1e-19
Alignment gi|NP_001036818.1| tropomyosin alpha-3 chain isoform 5 [Homo sa... 83 4e-16
Alignment gi|NP_001036817.1| tropomyosin alpha-3 chain isoform 3 [Homo sa... 83 4e-16
Alignment gi|NP_001036816.1| tropomyosin alpha-3 chain isoform 4 [Homo sa... 83 4e-16
Alignment gi|NP_705935.1| tropomyosin alpha-3 chain isoform 2 [Homo sapie... 83 4e-16
Alignment gi|NP_001018008.1| tropomyosin alpha-1 chain isoform 6 [Homo sa... 75 9e-14
>ref|NP_003281.1| tropomyosin alpha-4 chain isoform 2 [Homo sapiens].
Length = 248
Score = 95.1 bits (235), Expect = 1e-19
Identities = 53/83 (63%), Positives = 57/83 (68%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAGLNSLEAVKRKIQ LQQQADEAEDRA GL RELDG VA L RRIQL +
Sbjct: 1 MAGLNSLEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|NP_001036818.1| tropomyosin alpha-3 chain isoform 5 [Homo sapiens].
Length = 247
Score = 83.2 bits (204), Expect = 4e-16
Identities = 45/83 (54%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+AE+RA L RE++G VA L RRIQL +
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|NP_001036817.1| tropomyosin alpha-3 chain isoform 3 [Homo sapiens].
Length = 247
Score = 83.2 bits (204), Expect = 4e-16
Identities = 45/83 (54%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+AE+RA L RE++G VA L RRIQL +
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|NP_001036816.1| tropomyosin alpha-3 chain isoform 4 [Homo sapiens].
Length = 248
Score = 83.2 bits (204), Expect = 4e-16
Identities = 45/83 (54%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+AE+RA L RE++G VA L RRIQL +
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|NP_705935.1| tropomyosin alpha-3 chain isoform 2 [Homo sapiens].
Length = 248
Score = 83.2 bits (204), Expect = 4e-16
Identities = 45/83 (54%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+AE+RA L RE++G VA L RRIQL +
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|NP_001018008.1| tropomyosin alpha-1 chain isoform 6 [Homo sapiens].
Length = 245
Score = 75.5 bits (184), Expect = 9e-14
Identities = 44/83 (53%), Positives = 53/83 (63%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG +SLEAV+RKI+ LQ+QAD AE+RA L RELD VA L RRIQL +
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGTLQRELDHERKLRETAEADVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 29,916,379
Number of extensions: 603276
Number of successful extensions: 1751
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1751
Number of HSP's successfully gapped: 6
Length of query: 391
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 286
Effective length of database: 14,835,944
Effective search space: 4243079984
Effective search space used: 4243079984
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601S-064045
(1173 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001001491.1| tropomyosin alpha-4 chain [Mus musculus]. 91 2e-18
Alignment gi|NP_001157728.1| tropomyosin alpha-1 chain isoform 10 [Mus mu... 76 4e-14
Alignment gi|NP_001157726.1| tropomyosin alpha-1 chain isoform 8 [Mus mus... 76 4e-14
Alignment gi|NP_001157725.1| tropomyosin alpha-1 chain isoform 7 [Mus mus... 76 4e-14
Alignment gi|NP_001157724.1| tropomyosin alpha-1 chain isoform 6 [Mus mus... 76 4e-14
>ref|NP_001001491.1| tropomyosin alpha-4 chain [Mus musculus].
Length = 248
Score = 90.5 bits (223), Expect = 2e-18
Identities = 50/83 (60%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAGLNSLEAVKRKIQ LQQQAD+AEDRA GL RELDG A L RRIQL +
Sbjct: 1 MAGLNSLEAVKRKIQALQQQADDAEDRAQGLQRELDGERERREKAEGDAAALNRRIQLLE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A E+LAT L ++ A
Sbjct: 61 EELDRAQEQLATALQNLEEAEKA 83
>ref|NP_001157728.1| tropomyosin alpha-1 chain isoform 10 [Mus musculus].
Length = 245
Score = 76.3 bits (186), Expect = 4e-14
Identities = 44/83 (53%), Positives = 53/83 (63%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG +SLEAV+RKI+ LQ+QAD AE+RA L RELD VA L RRIQL +
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDQERKLRETAEADVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|NP_001157726.1| tropomyosin alpha-1 chain isoform 8 [Mus musculus].
Length = 248
Score = 76.3 bits (186), Expect = 4e-14
Identities = 44/83 (53%), Positives = 53/83 (63%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG +SLEAV+RKI+ LQ+QAD AE+RA L RELD VA L RRIQL +
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDQERKLRETAEADVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|NP_001157725.1| tropomyosin alpha-1 chain isoform 7 [Mus musculus].
Length = 248
Score = 76.3 bits (186), Expect = 4e-14
Identities = 44/83 (53%), Positives = 53/83 (63%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG +SLEAV+RKI+ LQ+QAD AE+RA L RELD VA L RRIQL +
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDQERKLRETAEADVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|NP_001157724.1| tropomyosin alpha-1 chain isoform 6 [Mus musculus].
Length = 248
Score = 76.3 bits (186), Expect = 4e-14
Identities = 44/83 (53%), Positives = 53/83 (63%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG +SLEAV+RKI+ LQ+QAD AE+RA L RELD VA L RRIQL +
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDQERKLRETAEADVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 25,641,793
Number of extensions: 523412
Number of successful extensions: 1451
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1448
Number of HSP's successfully gapped: 5
Length of query: 391
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 288
Effective length of database: 12,523,851
Effective search space: 3606869088
Effective search space used: 3606869088
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601S-064045
(1173 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 224 8e-56
Sscrofa_Chr04 66 5e-08
>Sscrofa_Chr02
|| Length = 162569375
Score = 224 bits (113), Expect = 8e-56
Identities = 128/133 (96%)
Strand = Plus / Plus
Query: 100 atggctggcctcaactccctggaggcggtgaaacgcaagatccaggtcctgcagcagcag 159
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 61156657 atggctggcctcaactccctggaggcggtgaaacgcaagatccaggccctgcagcagcag 61156716
Query: 160 gcggacgaggcagaagatcgcgcgcacggcctgcaccgggagctggacggcgagcgcgag 219
|||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 61156717 gcggacgaggcagaggatcgcgcgcagggcctgcagcgggagctggacggcgagcgcgag 61156776
Query: 220 cggcgtgagaaag 232
||||| |||||||
Sbjct: 61156777 cggcgggagaaag 61156789
Score = 91.7 bits (46), Expect = 8e-16
Identities = 46/46 (100%)
Strand = Plus / Plus
Query: 1 ggctcgggggccggggcgcggctgctgcagctcttgcaagagcaga 46
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61156558 ggctcgggggccggggcgcggctgctgcagctcttgcaagagcaga 61156603
Score = 69.9 bits (35), Expect = 3e-09
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 232 gccgaaagggaagtagcacctctcactcgccgcatccaactcgctgatgaggacttggat 291
|||||| |||| |||||| |||||| ||| ||||||||||||| ||| ||||| |||||
Sbjct: 61161338 gccgaaggggatgtagcagctctcaatcggcgcatccaactcgttgaggaggagttggac 61161397
Query: 292 ttggctcatgaacgactggccac 314
|||||| ||||||||||||||
Sbjct: 61161398 agggctcaggaacgactggccac 61161420
>Sscrofa_Chr04
|| Length = 143465943
Score = 65.9 bits (33), Expect = 5e-08
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 121 gaggcggtgaaacgcaagatccaggtcctgcagcagcaggc 161
||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 104467102 gaggcggtgaagcgcaagatccaggttctgcagcagcaggc 104467142
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,388,332
Number of extensions: 322
Number of successful extensions: 322
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 322
Number of HSP's successfully gapped: 4
Length of query: 1173
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1152
Effective length of database: 2,808,413,156
Effective search space: 3235291955712
Effective search space used: 3235291955712
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)