Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601S-067317
(748 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_866127.1| PREDICTED: similar to tropomyosin 4 isoform 1 i... 212 3e-55
Alignment gi|XP_852641.1| PREDICTED: similar to tropomyosin 1, alpha isof... 212 3e-55
Alignment gi|XP_865307.1| PREDICTED: similar to Tropomyosin 1 alpha chain... 187 1e-47
Alignment gi|XP_865292.1| PREDICTED: similar to tropomyosin 1 alpha chain... 187 1e-47
Alignment gi|XP_535506.2| PREDICTED: similar to tropomyosin 1 alpha chain... 187 1e-47
Alignment gi|XP_865257.1| PREDICTED: similar to tropomyosin 1 alpha chain... 187 1e-47
Alignment gi|XP_864999.1| PREDICTED: similar to tropomyosin 1, alpha isof... 187 1e-47
Alignment gi|XP_864981.1| PREDICTED: similar to tropomyosin 1 alpha chain... 187 1e-47
Alignment gi|XP_864907.1| PREDICTED: similar to Tropomyosin 1 alpha chain... 187 1e-47
Alignment gi|XP_864888.1| PREDICTED: similar to Tropomyosin 1 alpha chain... 187 1e-47
>ref|XP_866127.1| PREDICTED: similar to tropomyosin 4 isoform 1 isoform 5 [Canis
familiaris].
Length = 284
Score = 212 bits (539), Expect = 3e-55
Identities = 118/160 (73%), Positives = 124/160 (77%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY
Sbjct: 1 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+NLKDAQEKLEL++KKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SENLKDAQEKLELTEKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKIGXXXXXXXXXXXXAMEANR 546
M +E EEK+ A EA+R
Sbjct: 121 DESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADR 160
Score = 49.3 bits (116), Expect = 4e-06
Identities = 31/98 (31%), Positives = 54/98 (55%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +L+ + E A +RAE +E EE+ K V L L+ + ++ DKY
Sbjct: 163 EEVARKLVILEGELERAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYE 222
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 363
+ +K +KL+ ++ +A AE VA L + I +E+EL
Sbjct: 223 EEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEDEL 260
>ref|XP_852641.1| PREDICTED: similar to tropomyosin 1, alpha isoform 2 [Canis
familiaris].
Length = 284
Score = 212 bits (539), Expect = 3e-55
Identities = 118/160 (73%), Positives = 124/160 (77%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY
Sbjct: 1 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+NLKDAQEKLEL++KKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SENLKDAQEKLELTEKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKIGXXXXXXXXXXXXAMEANR 546
M +E EEK+ A EA+R
Sbjct: 121 DESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADR 160
Score = 52.4 bits (124), Expect = 4e-07
Identities = 33/103 (32%), Positives = 58/103 (56%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +L+ + E A +RAE +E EE+ K V L L+ + ++ DKY
Sbjct: 163 EEVARKLVILEGELERAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYE 222
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQE 378
+ +K +KL+ ++ +A AE VA L + I +EE+L +A+E
Sbjct: 223 EEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKE 265
>ref|XP_865307.1| PREDICTED: similar to Tropomyosin 1 alpha chain (Alpha-tropomyosin)
isoform 26 [Canis familiaris].
Length = 284
Score = 187 bits (474), Expect = 1e-47
Identities = 100/141 (70%), Positives = 114/141 (80%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+ LKDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKI 489
M +E EEK+
Sbjct: 121 DESERGMKVIESRAQKDEEKM 141
Score = 53.1 bits (126), Expect = 3e-07
Identities = 31/98 (31%), Positives = 54/98 (55%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +++ D E A +RAE +ES EE+ K V L L+ + + + DKY
Sbjct: 163 EEVARKLVIIESDLERAEERAELSESKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYE 222
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 363
+ +K +KL+ ++ +A AE V L + I +E+EL
Sbjct: 223 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDEL 260
>ref|XP_865292.1| PREDICTED: similar to tropomyosin 1 alpha chain isoform 5 isoform
25 [Canis familiaris].
Length = 218
Score = 187 bits (474), Expect = 1e-47
Identities = 100/141 (70%), Positives = 114/141 (80%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+ LKDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKI 489
M +E EEK+
Sbjct: 121 DESERGMKVIESRAQKDEEKM 141
>ref|XP_535506.2| PREDICTED: similar to tropomyosin 1 alpha chain isoform 5 isoform 1
[Canis familiaris].
Length = 284
Score = 187 bits (474), Expect = 1e-47
Identities = 100/141 (70%), Positives = 114/141 (80%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+ LKDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKI 489
M +E EEK+
Sbjct: 121 DESERGMKVIESRAQKDEEKM 141
Score = 50.1 bits (118), Expect = 2e-06
Identities = 29/98 (29%), Positives = 54/98 (55%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +++ D E A +RAE +ES + EE+ + +++ L L + DKY
Sbjct: 163 EEVARKLVIIESDLERAEERAELSESQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDKYE 222
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 363
+ +K +KL+ ++ +A AE V L + I +E+EL
Sbjct: 223 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDEL 260
>ref|XP_865257.1| PREDICTED: similar to tropomyosin 1 alpha chain isoform 5 isoform
24 [Canis familiaris].
Length = 284
Score = 187 bits (474), Expect = 1e-47
Identities = 100/141 (70%), Positives = 114/141 (80%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+ LKDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKI 489
M +E EEK+
Sbjct: 121 DESERGMKVIESRAQKDEEKM 141
Score = 50.1 bits (118), Expect = 2e-06
Identities = 29/98 (29%), Positives = 54/98 (55%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +++ D E A +RAE +ES + EE+ + +++ L L + DKY
Sbjct: 163 EEVARKLVIIESDLERAEERAELSESQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDKYE 222
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 363
+ +K +KL+ ++ +A AE V L + I +E+EL
Sbjct: 223 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDEL 260
>ref|XP_864999.1| PREDICTED: similar to tropomyosin 1, alpha isoform 11 [Canis
familiaris].
Length = 284
Score = 187 bits (474), Expect = 1e-47
Identities = 100/141 (70%), Positives = 114/141 (80%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+ LKDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKI 489
M +E EEK+
Sbjct: 121 DESERGMKVIESRAQKDEEKM 141
Score = 56.2 bits (134), Expect = 3e-08
Identities = 32/111 (28%), Positives = 60/111 (54%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +++ D E A +RAE +ES KC ++EEEL + LK E + +KY
Sbjct: 163 EEVARKLVIIESDLERAEERAELSES-------KCAELEEELKTVTNNLKSLEAQAEKYS 215
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQK 402
Q +E++++ K +AE R + +E+ +D +E++A A ++
Sbjct: 216 QKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEE 266
>ref|XP_864981.1| PREDICTED: similar to tropomyosin 1 alpha chain isoform 4 isoform
10 [Canis familiaris].
Length = 284
Score = 187 bits (474), Expect = 1e-47
Identities = 100/141 (70%), Positives = 114/141 (80%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+ LKDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKI 489
M +E EEK+
Sbjct: 121 DESERGMKVIESRAQKDEEKM 141
Score = 52.0 bits (123), Expect = 6e-07
Identities = 32/112 (28%), Positives = 60/112 (53%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +++ D E A +RAE +ES + EE+ + +++ L L + DKY
Sbjct: 163 EEVARKLVIIESDLERAEERAELSESQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDKYE 222
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKL 405
+ +K +KL+ ++ +A AE V L + I +EE++ A+E + Q L
Sbjct: 223 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEENLSMHQML 274
>ref|XP_864907.1| PREDICTED: similar to Tropomyosin 1 alpha chain (Alpha-tropomyosin)
isoform 6 [Canis familiaris].
Length = 284
Score = 187 bits (474), Expect = 1e-47
Identities = 100/141 (70%), Positives = 114/141 (80%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+ LKDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKI 489
M +E EEK+
Sbjct: 121 DESERGMKVIESRAQKDEEKM 141
Score = 53.1 bits (126), Expect = 3e-07
Identities = 31/98 (31%), Positives = 54/98 (55%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +++ D E A +RAE +ES EE+ K V L L+ + + + DKY
Sbjct: 163 EEVARKLVIIESDLERAEERAELSESKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYE 222
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 363
+ +K +KL+ ++ +A AE V L + I +E+EL
Sbjct: 223 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDEL 260
>ref|XP_864888.1| PREDICTED: similar to Tropomyosin 1 alpha chain (Alpha-tropomyosin)
isoform 5 [Canis familiaris].
Length = 281
Score = 187 bits (474), Expect = 1e-47
Identities = 100/141 (70%), Positives = 114/141 (80%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+ LKDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKI 489
M +E EEK+
Sbjct: 121 DESERGMKVIESRAQKDEEKM 141
Score = 54.3 bits (129), Expect = 1e-07
Identities = 31/111 (27%), Positives = 59/111 (53%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +++ D E A +RAE +ES KC ++EEEL + LK E + +KY
Sbjct: 163 EEVARKLVIIESDLERAEERAELSES-------KCAELEEELKTVTNNLKSLEAQAEKYS 215
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQK 402
Q +E++++ K +AE R + +E+ +D +++L L++
Sbjct: 216 QKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDQLYQQLEQ 266
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.317 0.133 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 22,509,697
Number of extensions: 568505
Number of successful extensions: 5836
Number of sequences better than 1.0e-05: 83
Number of HSP's gapped: 5232
Number of HSP's successfully gapped: 178
Length of query: 249
Length of database: 18,874,504
Length adjustment: 100
Effective length of query: 149
Effective length of database: 15,540,904
Effective search space: 2315594696
Effective search space used: 2315594696
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 33 (17.3 bits)
Animal-Genome cDNA 20110601S-067317
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601S-067317
(748 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001094632.1| tropomyosin alpha-4 chain [Bos taurus]. 209 3e-54
Alignment gi|NP_001013608.1| tropomyosin alpha-1 chain [Bos taurus]. 184 5e-47
Alignment gi|XP_002700658.1| PREDICTED: tropomyosin 2, beta-like [Bos tau... 182 2e-46
Alignment gi|NP_001010995.2| tropomyosin beta chain [Bos taurus]. 182 3e-46
Alignment gi|NP_001011674.1| tropomyosin alpha-3 chain [Bos taurus]. 181 4e-46
Alignment gi|XP_001255756.3| PREDICTED: tropomyosin 2, beta-like isoform ... 145 5e-35
Alignment gi|XP_002690924.1| PREDICTED: sarcomeric tropomyosin kappa-like... 90 2e-18
Alignment gi|XP_002699032.1| PREDICTED: tropomyosin 4-like [Bos taurus]. 67 2e-11
Alignment gi|XP_589950.1| PREDICTED: tropomyosin 4 isoform 1 [Bos taurus]. 67 2e-11
Alignment gi|XP_002688135.1| PREDICTED: tropomyosin 4-like [Bos taurus]. 64 1e-10
>ref|NP_001094632.1| tropomyosin alpha-4 chain [Bos taurus].
Length = 284
Score = 209 bits (531), Expect = 3e-54
Identities = 117/160 (73%), Positives = 123/160 (76%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLK TEDELDKY
Sbjct: 1 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKETEDELDKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+NLKDAQEKLEL++KKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SENLKDAQEKLELTEKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKIGXXXXXXXXXXXXAMEANR 546
M +E EEK+ A EA+R
Sbjct: 121 DESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADR 160
Score = 52.4 bits (124), Expect = 4e-07
Identities = 33/103 (32%), Positives = 58/103 (56%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +L+ + E A +RAE +E EE+ K V L L+ + ++ DKY
Sbjct: 163 EEVARKLVILEGELERAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYE 222
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQE 378
+ +K +KL+ ++ +A AE VA L + I +EE+L +A+E
Sbjct: 223 EEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKE 265
>ref|NP_001013608.1| tropomyosin alpha-1 chain [Bos taurus].
Length = 284
Score = 184 bits (468), Expect = 5e-47
Identities = 99/141 (70%), Positives = 113/141 (80%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLK TEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+ LKDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKI 489
M +E EEK+
Sbjct: 121 DESERGMKVIESRAQKDEEKM 141
Score = 51.6 bits (122), Expect = 7e-07
Identities = 30/98 (30%), Positives = 53/98 (54%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +++ D E A +RAE +E EE+ K V L L+ + + + DKY
Sbjct: 163 EEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYE 222
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 363
+ +K +KL+ ++ +A AE V L + I +E+EL
Sbjct: 223 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDEL 260
>ref|XP_002700658.1| PREDICTED: tropomyosin 2, beta-like [Bos taurus].
Length = 125
Score = 182 bits (463), Expect = 2e-46
Identities = 94/113 (83%), Positives = 106/113 (93%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLK TEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKL 405
+ LKDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKL 113
>ref|NP_001010995.2| tropomyosin beta chain [Bos taurus].
Length = 284
Score = 182 bits (461), Expect = 3e-46
Identities = 97/141 (68%), Positives = 113/141 (80%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+EEE LQKKLKGTEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+++KDAQEKLE ++KKA+DAE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKI 489
M +E EEK+
Sbjct: 121 DESERGMKVIENRAMKDEEKM 141
Score = 52.0 bits (123), Expect = 5e-07
Identities = 30/98 (30%), Positives = 57/98 (58%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +L+ + E + +RAE AES + EE+ + +++ L L + + DKY
Sbjct: 163 EEVARKLVILEGELERSEERAEVAESRARQLEEELRTMDQALKSLMASEEEYSTKEDKYE 222
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 363
+ +K +EKL+ ++ +A AE VA L + I +E+E+
Sbjct: 223 EEIKLLEEKLKEAETRAEFAERSVAKLEKTIDDLEDEV 260
>ref|NP_001011674.1| tropomyosin alpha-3 chain [Bos taurus].
Length = 284
Score = 181 bits (460), Expect = 4e-46
Identities = 101/160 (63%), Positives = 118/160 (73%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
MEAIKKKMQMLKLDKENA+DRAEQAE+++K AEE+ KQ+E+EL +QKKLKGTEDELDKY
Sbjct: 1 MEAIKKKMQMLKLDKENALDRAEQAEAEQKQAEERSKQLEDELAAMQKKLKGTEDELDKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+ LKDAQEKLEL++KKA+DAE +VA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKIGXXXXXXXXXXXXAMEANR 546
M +E EEK+ A EA+R
Sbjct: 121 DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADR 160
Score = 53.9 bits (128), Expect = 1e-07
Identities = 32/98 (32%), Positives = 54/98 (55%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +++ D E +RAE AES EE+ K V L L+ + + + DKY
Sbjct: 163 EEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYE 222
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 363
+ +K +KL+ ++ +A AE VA L + I +E+EL
Sbjct: 223 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDEL 260
>ref|XP_001255756.3| PREDICTED: tropomyosin 2, beta-like isoform 1 [Bos taurus].
Length = 125
Score = 145 bits (365), Expect = 5e-35
Identities = 75/113 (66%), Positives = 94/113 (83%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+EE++ +K L+ +EDE D+
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEEDIAAKEKLLRVSEDERDRV 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKL 405
+ L A++ L + + A+ AE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 LEELHKAEDSLLAADEAAAKAEADVASLNRRIQLVEEELDRAQERLATALQKL 113
>ref|XP_002690924.1| PREDICTED: sarcomeric tropomyosin kappa-like [Bos taurus].
Length = 278
Score = 89.7 bits (221), Expect = 2e-18
Identities = 44/79 (55%), Positives = 62/79 (78%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+EE++ +K L+ +EDE D+
Sbjct: 187 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEEDIAAKEKLLRVSEDERDRV 246
Query: 247 FQNLKDAQEKLELSKKKAS 303
+ L A++ L + + A+
Sbjct: 247 LEELHKAEDSLLAADEAAA 265
>ref|XP_002699032.1| PREDICTED: tropomyosin 4-like [Bos taurus].
Length = 248
Score = 67.0 bits (162), Expect = 2e-11
Identities = 43/115 (37%), Positives = 60/115 (52%)
Frame = +1
Query: 202 LQKKLKGTEDELDKYFQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQER 381
+++K++ + + D + + Q ++E + AE +VA+LNRRIQLVEEELDRAQER
Sbjct: 10 VKRKIQVLQQQADDAQERAERLQREVEGEGRAREQAEAEVASLNRRIQLVEEELDRAQER 69
Query: 382 LATALQKLXXXXXXXXXXXXXMNGMEKAGH*KEEKIGXXXXXXXXXXXXAMEANR 546
LATALQKL M +E EEK+ A EA+R
Sbjct: 70 LATALQKLEEAEKAADESERGMKVIENQALKDEEKMELQEIQLKEAKHIAEEADR 124
Score = 60.1 bits (144), Expect = 2e-09
Identities = 31/111 (27%), Positives = 66/111 (59%)
Frame = +1
Query: 61 PAMEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELD 240
P +EA+K+K+Q+L+ ++A +RAE+ + + + +Q E E+ L ++++ E+ELD
Sbjct: 5 PTIEAVKRKIQVLQQQADDAQERAERLQREVEGEGRAREQAEAEVASLNRRIQLVEEELD 64
Query: 241 KYFQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATA 393
+ + L A +KLE ++K A ++E + + + EE+++ + +L A
Sbjct: 65 RAQERLATALQKLEEAEKAADESERGMKVIENQALKDEEKMELQEIQLKEA 115
>ref|XP_589950.1| PREDICTED: tropomyosin 4 isoform 1 [Bos taurus].
Length = 248
Score = 67.0 bits (162), Expect = 2e-11
Identities = 43/115 (37%), Positives = 60/115 (52%)
Frame = +1
Query: 202 LQKKLKGTEDELDKYFQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQER 381
+++K++ + + D + + Q ++E + AE +VA+LNRRIQLVEEELDRAQER
Sbjct: 10 VKRKIQVLQQQADDAQERAERLQREVEGEGRAREQAEAEVASLNRRIQLVEEELDRAQER 69
Query: 382 LATALQKLXXXXXXXXXXXXXMNGMEKAGH*KEEKIGXXXXXXXXXXXXAMEANR 546
LATALQKL M +E EEK+ A EA+R
Sbjct: 70 LATALQKLEEAEKAADESERGMKVIENQALKDEEKMELQEIQLKEAKHIAEEADR 124
Score = 60.1 bits (144), Expect = 2e-09
Identities = 31/111 (27%), Positives = 66/111 (59%)
Frame = +1
Query: 61 PAMEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELD 240
P +EA+K+K+Q+L+ ++A +RAE+ + + + +Q E E+ L ++++ E+ELD
Sbjct: 5 PTIEAVKRKIQVLQQQADDAQERAERLQREVEGEGRAREQAEAEVASLNRRIQLVEEELD 64
Query: 241 KYFQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATA 393
+ + L A +KLE ++K A ++E + + + EE+++ + +L A
Sbjct: 65 RAQERLATALQKLEEAEKAADESERGMKVIENQALKDEEKMELQEIQLKEA 115
>ref|XP_002688135.1| PREDICTED: tropomyosin 4-like [Bos taurus].
Length = 248
Score = 64.3 bits (155), Expect = 1e-10
Identities = 42/112 (37%), Positives = 57/112 (50%)
Frame = +1
Query: 211 KLKGTEDELDKYFQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLAT 390
K++ + + D + K Q+K++ + AE +V +LNRRIQLVEEEL+RAQERLAT
Sbjct: 13 KIQVLQQQADDAEERAKRLQQKVDGERWAREQAEAEVVSLNRRIQLVEEELNRAQERLAT 72
Query: 391 ALQKLXXXXXXXXXXXXXMNGMEKAGH*KEEKIGXXXXXXXXXXXXAMEANR 546
ALQKL M +E EEK+ A EA+R
Sbjct: 73 ALQKLEEAEKAADESERVMKVIENQALKDEEKMELQEIQLKEAKHIAEEAHR 124
Score = 48.1 bits (113), Expect = 8e-06
Identities = 28/108 (25%), Positives = 61/108 (56%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
EA+K K+Q+L+ ++A +RA++ + +Q E E+ L ++++ E+EL++
Sbjct: 8 EAMKCKIQVLQQQADDAEERAKRLQQKVDGERWAREQAEAEVVSLNRRIQLVEEELNRAQ 67
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATA 393
+ L A +KLE ++K A ++E + + + EE+++ + +L A
Sbjct: 68 ERLATALQKLEEAEKAADESERVMKVIENQALKDEEKMELQEIQLKEA 115
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.317 0.133 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 21,386,322
Number of extensions: 541970
Number of successful extensions: 4140
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 3956
Number of HSP's successfully gapped: 23
Length of query: 249
Length of database: 17,681,374
Length adjustment: 100
Effective length of query: 149
Effective length of database: 14,372,574
Effective search space: 2141513526
Effective search space used: 2141513526
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601S-067317
(748 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361668.1| PREDICTED: tropomyosin alpha-3 chain-like is... 181 3e-46
Alignment gi|XP_003361667.1| PREDICTED: tropomyosin alpha-3 chain-like is... 181 3e-46
Alignment gi|NP_001123419.1| tropomyosin beta chain [Sus scrofa]. 181 5e-46
Alignment gi|NP_001090952.1| tropomyosin alpha-1 chain [Sus scrofa]. 180 6e-46
Alignment gi|NP_999500.1| tropomyosin alpha-4 chain [Sus scrofa]. 76 2e-14
Alignment gi|NP_001001632.1| tropomyosin alpha-3 chain [Sus scrofa]. 69 4e-12
>ref|XP_003361668.1| PREDICTED: tropomyosin alpha-3 chain-like isoform 2 [Sus scrofa].
Length = 284
Score = 181 bits (460), Expect = 3e-46
Identities = 101/160 (63%), Positives = 118/160 (73%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
MEAIKKKMQMLKLDKENA+DRAEQAE+++K AEE+ KQ+E+EL +QKKLKGTEDELDKY
Sbjct: 1 MEAIKKKMQMLKLDKENALDRAEQAEAEQKQAEERSKQLEDELAAMQKKLKGTEDELDKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+ LKDAQEKLEL++KKA+DAE +VA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKIGXXXXXXXXXXXXAMEANR 546
M +E EEK+ A EA+R
Sbjct: 121 DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADR 160
Score = 48.9 bits (115), Expect = 3e-06
Identities = 29/98 (29%), Positives = 55/98 (56%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +++ D E +RAE AES + +E+ + +++ L L + + DKY
Sbjct: 163 EEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKYE 222
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 363
+ +K +KL+ ++ +A AE VA L + I +E+EL
Sbjct: 223 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDEL 260
>ref|XP_003361667.1| PREDICTED: tropomyosin alpha-3 chain-like isoform 1 [Sus scrofa].
Length = 284
Score = 181 bits (460), Expect = 3e-46
Identities = 101/160 (63%), Positives = 118/160 (73%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
MEAIKKKMQMLKLDKENA+DRAEQAE+++K AEE+ KQ+E+EL +QKKLKGTEDELDKY
Sbjct: 1 MEAIKKKMQMLKLDKENALDRAEQAEAEQKQAEERSKQLEDELAAMQKKLKGTEDELDKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+ LKDAQEKLEL++KKA+DAE +VA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKIGXXXXXXXXXXXXAMEANR 546
M +E EEK+ A EA+R
Sbjct: 121 DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADR 160
Score = 53.9 bits (128), Expect = 9e-08
Identities = 32/98 (32%), Positives = 54/98 (55%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +++ D E +RAE AES EE+ K V L L+ + + + DKY
Sbjct: 163 EEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYE 222
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 363
+ +K +KL+ ++ +A AE VA L + I +E+EL
Sbjct: 223 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDEL 260
>ref|NP_001123419.1| tropomyosin beta chain [Sus scrofa].
Length = 287
Score = 181 bits (458), Expect = 5e-46
Identities = 92/113 (81%), Positives = 106/113 (93%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+EEE LQKKLKGTEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKL 405
+++KDAQEKLE ++KKA+DAE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKL 113
Score = 54.7 bits (130), Expect = 5e-08
Identities = 33/103 (32%), Positives = 59/103 (57%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +L+ + E + +RAE AES + EE+ + +++ L L + + DKY
Sbjct: 166 EEVARKLVILEGELERSEERAEVAESRARQLEEELRTMDQALKSLMASEEEYSTKEDKYE 225
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQE 378
+ +K +EKL+ ++ +A AE VA L + I +EE L A+E
Sbjct: 226 EEIKLLEEKLKEAETRAEFAERSVAKLEKTIDDLEETLASAKE 268
>ref|NP_001090952.1| tropomyosin alpha-1 chain [Sus scrofa].
Length = 284
Score = 180 bits (457), Expect = 6e-46
Identities = 97/141 (68%), Positives = 112/141 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ K++E+EL LQKKLK TEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKRLEDELVSLQKKLKATEDELDKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+ KDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SEAPKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKI 489
M +E EEK+
Sbjct: 121 DESERGMKVIESRAQKDEEKM 141
Score = 51.6 bits (122), Expect = 4e-07
Identities = 30/98 (30%), Positives = 53/98 (54%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +++ D E A +RAE +E EE+ K V L L+ + + + DKY
Sbjct: 163 EEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYE 222
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 363
+ +K +KL+ ++ +A AE V L + I +E+EL
Sbjct: 223 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDEL 260
>ref|NP_999500.1| tropomyosin alpha-4 chain [Sus scrofa].
Length = 248
Score = 76.3 bits (186), Expect = 2e-14
Identities = 47/118 (39%), Positives = 64/118 (54%)
Frame = +1
Query: 193 LTHLQKKLKGTEDELDKYFQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRA 372
L +++K++ + + D+ + Q +L+ +++ AEGDVAALNRRIQLVEEELDRA
Sbjct: 7 LEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVEEELDRA 66
Query: 373 QERLATALQKLXXXXXXXXXXXXXMNGMEKAGH*KEEKIGXXXXXXXXXXXXAMEANR 546
QERLATALQKL M +E EEK+ A EA+R
Sbjct: 67 QERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADR 124
Score = 58.2 bits (139), Expect = 5e-09
Identities = 30/110 (27%), Positives = 64/110 (58%)
Frame = +1
Query: 64 AMEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDK 243
++EA+K+K+Q L+ + A DRA+ + + E+ ++ E ++ L ++++ E+ELD+
Sbjct: 6 SLEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVEEELDR 65
Query: 244 YFQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATA 393
+ L A +KLE ++K A ++E + + R EE+++ + +L A
Sbjct: 66 AQERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEA 115
Score = 52.4 bits (124), Expect = 3e-07
Identities = 33/103 (32%), Positives = 58/103 (56%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +L+ + E A +RAE +E EE+ K V L L+ + ++ DKY
Sbjct: 127 EEVARKLVILEGELERAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYE 186
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQE 378
+ +K +KL+ ++ +A AE VA L + I +EE+L +A+E
Sbjct: 187 EEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKE 229
>ref|NP_001001632.1| tropomyosin alpha-3 chain [Sus scrofa].
Length = 248
Score = 68.6 bits (166), Expect = 4e-12
Identities = 43/115 (37%), Positives = 61/115 (53%)
Frame = +1
Query: 202 LQKKLKGTEDELDKYFQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQER 381
+++K++ + + D + + Q ++E ++ AE +VA+LNRRIQLVEEELDRAQER
Sbjct: 10 VKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVEEELDRAQER 69
Query: 382 LATALQKLXXXXXXXXXXXXXMNGMEKAGH*KEEKIGXXXXXXXXXXXXAMEANR 546
LATALQKL M +E EEK+ A EA+R
Sbjct: 70 LATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADR 124
Score = 59.7 bits (143), Expect = 2e-09
Identities = 31/109 (28%), Positives = 65/109 (59%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
+EA+K+K+Q+L+ ++A +RAE+ + + + +Q E E+ L ++++ E+ELD+
Sbjct: 7 IEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVEEELDRA 66
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATA 393
+ L A +KLE ++K A ++E + + R EE+++ + +L A
Sbjct: 67 QERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEA 115
Score = 48.1 bits (113), Expect = 5e-06
Identities = 29/103 (28%), Positives = 57/103 (55%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +++ D E +RAE AES + +E+ + +++ L L + + DKY
Sbjct: 127 EEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKYE 186
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQE 378
+ +K +KL+ ++ +A AE VA L + I +E++L +E
Sbjct: 187 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKE 229
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.317 0.133 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 13,811,328
Number of extensions: 348056
Number of successful extensions: 2558
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2453
Number of HSP's successfully gapped: 15
Length of query: 249
Length of database: 11,343,932
Length adjustment: 96
Effective length of query: 153
Effective length of database: 8,953,820
Effective search space: 1369934460
Effective search space used: 1369934460
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601S-067317
(748 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001157727.1| tropomyosin alpha-1 chain isoform 9 [Mus mus... 187 9e-48
Alignment gi|NP_001157723.1| tropomyosin alpha-1 chain isoform 5 [Mus mus... 187 9e-48
Alignment gi|NP_001157722.1| tropomyosin alpha-1 chain isoform 4 [Mus mus... 187 9e-48
Alignment gi|NP_001157720.1| tropomyosin alpha-1 chain isoform 1 [Mus mus... 187 9e-48
Alignment gi|NP_077745.2| tropomyosin alpha-1 chain isoform 3 [Mus muscul... 187 9e-48
Alignment gi|NP_033442.2| tropomyosin beta chain [Mus musculus]. 182 3e-46
Alignment gi|NP_071709.2| tropomyosin alpha-3 chain [Mus musculus]. 180 1e-45
Alignment gi|NP_001157721.1| tropomyosin alpha-1 chain isoform 2 [Mus mus... 148 5e-36
Alignment gi|NP_001157728.1| tropomyosin alpha-1 chain isoform 10 [Mus mu... 74 2e-13
Alignment gi|NP_001157726.1| tropomyosin alpha-1 chain isoform 8 [Mus mus... 74 2e-13
>ref|NP_001157727.1| tropomyosin alpha-1 chain isoform 9 [Mus musculus].
Length = 281
Score = 187 bits (474), Expect = 9e-48
Identities = 100/141 (70%), Positives = 114/141 (80%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+ LKDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKI 489
M +E EEK+
Sbjct: 121 DESERGMKVIESRAQKDEEKM 141
Score = 52.4 bits (124), Expect = 4e-07
Identities = 30/111 (27%), Positives = 58/111 (52%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +++ D E A +RAE +E KC ++EEEL + LK E + +KY
Sbjct: 163 EEVARKLVIIESDLERAEERAELSEG-------KCAELEEELKTVTNNLKSLEAQAEKYS 215
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQK 402
Q +E++++ K +AE R + +E+ +D +++L L++
Sbjct: 216 QKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDQLYHQLEQ 266
>ref|NP_001157723.1| tropomyosin alpha-1 chain isoform 5 [Mus musculus].
Length = 284
Score = 187 bits (474), Expect = 9e-48
Identities = 100/141 (70%), Positives = 114/141 (80%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+ LKDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKI 489
M +E EEK+
Sbjct: 121 DESERGMKVIESRAQKDEEKM 141
Score = 48.5 bits (114), Expect = 5e-06
Identities = 28/98 (28%), Positives = 53/98 (54%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +++ D E A +RAE +E + EE+ + +++ L L + DKY
Sbjct: 163 EEVARKLVIIESDLERAEERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDKYE 222
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 363
+ +K +KL+ ++ +A AE V L + I +E+EL
Sbjct: 223 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDEL 260
>ref|NP_001157722.1| tropomyosin alpha-1 chain isoform 4 [Mus musculus].
Length = 284
Score = 187 bits (474), Expect = 9e-48
Identities = 100/141 (70%), Positives = 114/141 (80%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+ LKDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKI 489
M +E EEK+
Sbjct: 121 DESERGMKVIESRAQKDEEKM 141
Score = 50.4 bits (119), Expect = 1e-06
Identities = 31/112 (27%), Positives = 59/112 (52%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +++ D E A +RAE +E + EE+ + +++ L L + DKY
Sbjct: 163 EEVARKLVIIESDLERAEERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDKYE 222
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKL 405
+ +K +KL+ ++ +A AE V L + I +EE++ A+E + Q L
Sbjct: 223 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEENLSMHQML 274
>ref|NP_001157720.1| tropomyosin alpha-1 chain isoform 1 [Mus musculus].
Length = 284
Score = 187 bits (474), Expect = 9e-48
Identities = 100/141 (70%), Positives = 114/141 (80%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+ LKDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKI 489
M +E EEK+
Sbjct: 121 DESERGMKVIESRAQKDEEKM 141
Score = 51.6 bits (122), Expect = 6e-07
Identities = 30/98 (30%), Positives = 53/98 (54%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +++ D E A +RAE +E EE+ K V L L+ + + + DKY
Sbjct: 163 EEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYE 222
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 363
+ +K +KL+ ++ +A AE V L + I +E+EL
Sbjct: 223 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDEL 260
>ref|NP_077745.2| tropomyosin alpha-1 chain isoform 3 [Mus musculus].
Length = 284
Score = 187 bits (474), Expect = 9e-48
Identities = 100/141 (70%), Positives = 114/141 (80%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+ LKDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKI 489
M +E EEK+
Sbjct: 121 DESERGMKVIESRAQKDEEKM 141
Score = 54.7 bits (130), Expect = 7e-08
Identities = 31/111 (27%), Positives = 59/111 (53%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +++ D E A +RAE +E KC ++EEEL + LK E + +KY
Sbjct: 163 EEVARKLVIIESDLERAEERAELSEG-------KCAELEEELKTVTNNLKSLEAQAEKYS 215
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQK 402
Q +E++++ K +AE R + +E+ +D +E++A A ++
Sbjct: 216 QKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEE 266
>ref|NP_033442.2| tropomyosin beta chain [Mus musculus].
Length = 284
Score = 182 bits (461), Expect = 3e-46
Identities = 97/141 (68%), Positives = 113/141 (80%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+EEE LQKKLKGTEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+++KDAQEKLE ++KKA+DAE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKI 489
M +E EEK+
Sbjct: 121 DESERGMKVIENRAMKDEEKM 141
Score = 50.8 bits (120), Expect = 1e-06
Identities = 32/98 (32%), Positives = 55/98 (56%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +L+ + E + +RAE AES EE+ K V L L+ + + DKY
Sbjct: 163 EEVARKLVILEGELERSEERAEVAESKCGDLEEELKIVTNNLKSLEAQADKYSTKEDKYE 222
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 363
+ +K +EKL+ ++ +A AE VA L + I +E+E+
Sbjct: 223 EEIKLLEEKLKEAETRAEFAERSVAKLEKTIDDLEDEV 260
>ref|NP_071709.2| tropomyosin alpha-3 chain [Mus musculus].
Length = 284
Score = 180 bits (456), Expect = 1e-45
Identities = 100/160 (62%), Positives = 117/160 (73%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
MEAIKKKMQMLKLDKEN +DRAEQAE+++K AEE+ KQ+E+EL +QKKLKGTEDELDKY
Sbjct: 1 MEAIKKKMQMLKLDKENVLDRAEQAEAEQKQAEERSKQLEDELATMQKKLKGTEDELDKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+ LKDAQEKLEL++KKA+DAE +VA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKIGXXXXXXXXXXXXAMEANR 546
M +E EEK+ A EA+R
Sbjct: 121 DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADR 160
Score = 48.1 bits (113), Expect = 7e-06
Identities = 29/103 (28%), Positives = 57/103 (55%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +++ D E +RAE AES + +E+ + +++ L L + + DKY
Sbjct: 163 EEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKYE 222
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQE 378
+ +K +KL+ ++ +A AE VA L + I +E++L +E
Sbjct: 223 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKE 265
>ref|NP_001157721.1| tropomyosin alpha-1 chain isoform 2 [Mus musculus].
Length = 284
Score = 148 bits (373), Expect = 5e-36
Identities = 80/141 (56%), Positives = 101/141 (71%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+EE++ +K L+ +EDE D+
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEEDIAAKEKLLRASEDERDRV 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+ L A++ L + + A+ AE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 LEELHKAEDSLLAADETAAKAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKI 489
M +E EEK+
Sbjct: 121 DESERGMKVIESRAQKDEEKM 141
Score = 54.7 bits (130), Expect = 7e-08
Identities = 31/111 (27%), Positives = 59/111 (53%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +++ D E A +RAE +E KC ++EEEL + LK E + +KY
Sbjct: 163 EEVARKLVIIESDLERAEERAELSEG-------KCAELEEELKTVTNNLKSLEAQAEKYS 215
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQK 402
Q +E++++ K +AE R + +E+ +D +E++A A ++
Sbjct: 216 QKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEE 266
>ref|NP_001157728.1| tropomyosin alpha-1 chain isoform 10 [Mus musculus].
Length = 245
Score = 73.6 bits (179), Expect = 2e-13
Identities = 42/99 (42%), Positives = 57/99 (57%)
Frame = +1
Query: 193 LTHLQKKLKGTEDELDKYFQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRA 372
L +++K++ +++ D + Q +L+ +K AE DVA+LNRRIQLVEEELDRA
Sbjct: 7 LEAVRRKIRSLQEQADAAEERAGSLQRELDQERKLRETAEADVASLNRRIQLVEEELDRA 66
Query: 373 QERLATALQKLXXXXXXXXXXXXXMNGMEKAGH*KEEKI 489
QERLATALQKL M +E EEK+
Sbjct: 67 QERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKM 105
Score = 52.4 bits (124), Expect = 4e-07
Identities = 30/111 (27%), Positives = 58/111 (52%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +++ D E A +RAE +E KC ++EEEL + LK E + +KY
Sbjct: 127 EEVARKLVIIESDLERAEERAELSEG-------KCAELEEELKTVTNNLKSLEAQAEKYS 179
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQK 402
Q +E++++ K +AE R + +E+ +D +++L L++
Sbjct: 180 QKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDQLYHQLEQ 230
Score = 49.7 bits (117), Expect = 2e-06
Identities = 27/110 (24%), Positives = 62/110 (56%)
Frame = +1
Query: 64 AMEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDK 243
++EA+++K++ L+ + A +RA + + + + E ++ L ++++ E+ELD+
Sbjct: 6 SLEAVRRKIRSLQEQADAAEERAGSLQRELDQERKLRETAEADVASLNRRIQLVEEELDR 65
Query: 244 YFQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATA 393
+ L A +KLE ++K A ++E + + R Q EE+++ + +L A
Sbjct: 66 AQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEA 115
>ref|NP_001157726.1| tropomyosin alpha-1 chain isoform 8 [Mus musculus].
Length = 248
Score = 73.6 bits (179), Expect = 2e-13
Identities = 42/99 (42%), Positives = 57/99 (57%)
Frame = +1
Query: 193 LTHLQKKLKGTEDELDKYFQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRA 372
L +++K++ +++ D + Q +L+ +K AE DVA+LNRRIQLVEEELDRA
Sbjct: 7 LEAVRRKIRSLQEQADAAEERAGSLQRELDQERKLRETAEADVASLNRRIQLVEEELDRA 66
Query: 373 QERLATALQKLXXXXXXXXXXXXXMNGMEKAGH*KEEKI 489
QERLATALQKL M +E EEK+
Sbjct: 67 QERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKM 105
Score = 51.6 bits (122), Expect = 6e-07
Identities = 30/98 (30%), Positives = 53/98 (54%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +++ D E A +RAE +E EE+ K V L L+ + + + DKY
Sbjct: 127 EEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYE 186
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 363
+ +K +KL+ ++ +A AE V L + I +E+EL
Sbjct: 187 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDEL 224
Score = 49.7 bits (117), Expect = 2e-06
Identities = 27/110 (24%), Positives = 62/110 (56%)
Frame = +1
Query: 64 AMEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDK 243
++EA+++K++ L+ + A +RA + + + + E ++ L ++++ E+ELD+
Sbjct: 6 SLEAVRRKIRSLQEQADAAEERAGSLQRELDQERKLRETAEADVASLNRRIQLVEEELDR 65
Query: 244 YFQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATA 393
+ L A +KLE ++K A ++E + + R Q EE+++ + +L A
Sbjct: 66 AQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEA 115
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.317 0.133 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 18,586,591
Number of extensions: 466030
Number of successful extensions: 3839
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 3561
Number of HSP's successfully gapped: 37
Length of query: 249
Length of database: 15,617,559
Length adjustment: 99
Effective length of query: 150
Effective length of database: 12,643,995
Effective search space: 1896599250
Effective search space used: 1896599250
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601S-067317
(748 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001138632.1| tropomyosin alpha-4 chain isoform 1 [Homo sa... 207 6e-54
Alignment gi|NP_001018005.1| tropomyosin alpha-1 chain isoform 1 [Homo sa... 187 1e-47
Alignment gi|NP_000357.3| tropomyosin alpha-1 chain isoform 5 [Homo sapie... 187 1e-47
Alignment gi|NP_001018006.1| tropomyosin alpha-1 chain isoform 4 [Homo sa... 187 1e-47
Alignment gi|NP_001018004.1| tropomyosin alpha-1 chain isoform 3 [Homo sa... 187 1e-47
Alignment gi|NP_689476.2| tropomyosin alpha-3 chain isoform 1 [Homo sapie... 181 5e-46
Alignment gi|NP_998839.1| tropomyosin beta chain isoform 2 [Homo sapiens]. 180 1e-45
Alignment gi|NP_003280.2| tropomyosin beta chain isoform 1 [Homo sapiens]. 180 1e-45
Alignment gi|NP_001018007.1| tropomyosin alpha-1 chain isoform 2 [Homo sa... 147 7e-36
Alignment gi|NP_001018020.1| tropomyosin alpha-1 chain isoform 7 [Homo sa... 147 7e-36
>ref|NP_001138632.1| tropomyosin alpha-4 chain isoform 1 [Homo sapiens].
Length = 284
Score = 207 bits (528), Expect = 6e-54
Identities = 115/160 (71%), Positives = 124/160 (77%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
MEAIKKKMQMLKLDKENAIDRAEQAE+DKKAAE+KCKQVEEELTHLQKKLKGTEDELDKY
Sbjct: 1 MEAIKKKMQMLKLDKENAIDRAEQAEADKKAAEDKCKQVEEELTHLQKKLKGTEDELDKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
++LKDAQEKLEL++KKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SEDLKDAQEKLELTEKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKIGXXXXXXXXXXXXAMEANR 546
M +E EEK+ A EA+R
Sbjct: 121 DESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADR 160
Score = 52.4 bits (124), Expect = 4e-07
Identities = 33/103 (32%), Positives = 58/103 (56%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +L+ + E A +RAE +E EE+ K V L L+ + ++ DKY
Sbjct: 163 EEVARKLVILEGELERAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYE 222
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQE 378
+ +K +KL+ ++ +A AE VA L + I +EE+L +A+E
Sbjct: 223 EEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKE 265
>ref|NP_001018005.1| tropomyosin alpha-1 chain isoform 1 [Homo sapiens].
Length = 284
Score = 187 bits (474), Expect = 1e-47
Identities = 100/141 (70%), Positives = 114/141 (80%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+ LKDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKI 489
M +E EEK+
Sbjct: 121 DESERGMKVIESRAQKDEEKM 141
Score = 50.8 bits (120), Expect = 1e-06
Identities = 29/105 (27%), Positives = 54/105 (51%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +++ D E A +RAE +E KC ++EEEL + LK E + +KY
Sbjct: 163 EEVARKLVIIESDLERAEERAELSEG-------KCAELEEELKTVTNNLKSLEAQAEKYS 215
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERL 384
Q +E++++ K +AE R + +E+ +D ++ L
Sbjct: 216 QKEDRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDEL 260
>ref|NP_000357.3| tropomyosin alpha-1 chain isoform 5 [Homo sapiens].
Length = 284
Score = 187 bits (474), Expect = 1e-47
Identities = 100/141 (70%), Positives = 114/141 (80%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+ LKDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKI 489
M +E EEK+
Sbjct: 121 DESERGMKVIESRAQKDEEKM 141
>ref|NP_001018006.1| tropomyosin alpha-1 chain isoform 4 [Homo sapiens].
Length = 284
Score = 187 bits (474), Expect = 1e-47
Identities = 100/141 (70%), Positives = 114/141 (80%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+ LKDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKI 489
M +E EEK+
Sbjct: 121 DESERGMKVIESRAQKDEEKM 141
Score = 49.3 bits (116), Expect = 4e-06
Identities = 30/112 (26%), Positives = 59/112 (52%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +++ D E A +RAE +E + EE+ + +++ L L + D+Y
Sbjct: 163 EEVARKLVIIESDLERAEERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDRYE 222
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKL 405
+ +K +KL+ ++ +A AE V L + I +EE++ A+E + Q L
Sbjct: 223 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEENLSMHQML 274
>ref|NP_001018004.1| tropomyosin alpha-1 chain isoform 3 [Homo sapiens].
Length = 284
Score = 187 bits (474), Expect = 1e-47
Identities = 100/141 (70%), Positives = 114/141 (80%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+ LKDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKI 489
M +E EEK+
Sbjct: 121 DESERGMKVIESRAQKDEEKM 141
Score = 54.3 bits (129), Expect = 1e-07
Identities = 31/111 (27%), Positives = 59/111 (53%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +++ D E A +RAE +E KC ++EEEL + LK E + +KY
Sbjct: 163 EEVARKLVIIESDLERAEERAELSEG-------KCAELEEELKTVTNNLKSLEAQAEKYS 215
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQK 402
Q +E++++ K +AE R + +E+ +D +E++A A ++
Sbjct: 216 QKEDRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEE 266
>ref|NP_689476.2| tropomyosin alpha-3 chain isoform 1 [Homo sapiens].
Length = 285
Score = 181 bits (460), Expect = 5e-46
Identities = 101/160 (63%), Positives = 118/160 (73%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
MEAIKKKMQMLKLDKENA+DRAEQAE+++K AEE+ KQ+E+EL +QKKLKGTEDELDKY
Sbjct: 2 MEAIKKKMQMLKLDKENALDRAEQAEAEQKQAEERSKQLEDELAAMQKKLKGTEDELDKY 61
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+ LKDAQEKLEL++KKA+DAE +VA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 62 SEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 121
Query: 427 XXXXXXMNGMEKAGH*KEEKIGXXXXXXXXXXXXAMEANR 546
M +E EEK+ A EA+R
Sbjct: 122 DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADR 161
Score = 53.9 bits (128), Expect = 1e-07
Identities = 32/98 (32%), Positives = 54/98 (55%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +++ D E +RAE AES EE+ K V L L+ + + + DKY
Sbjct: 164 EEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYE 223
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 363
+ +K +KL+ ++ +A AE VA L + I +E+EL
Sbjct: 224 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDEL 261
>ref|NP_998839.1| tropomyosin beta chain isoform 2 [Homo sapiens].
Length = 284
Score = 180 bits (457), Expect = 1e-45
Identities = 96/141 (68%), Positives = 113/141 (80%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+EEE LQKKLKGTEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+++K+AQEKLE ++KKA+DAE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SESVKEAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKI 489
M +E EEK+
Sbjct: 121 DESERGMKVIENRAMKDEEKM 141
Score = 54.7 bits (130), Expect = 9e-08
Identities = 33/103 (32%), Positives = 59/103 (57%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +L+ + E + +RAE AES + EE+ + +++ L L + + DKY
Sbjct: 163 EEVARKLVILEGELERSEERAEVAESRARQLEEELRTMDQALKSLMASEEEYSTKEDKYE 222
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQE 378
+ +K +EKL+ ++ +A AE VA L + I +EE L A+E
Sbjct: 223 EEIKLLEEKLKEAETRAEFAERSVAKLEKTIDDLEETLASAKE 265
>ref|NP_003280.2| tropomyosin beta chain isoform 1 [Homo sapiens].
Length = 284
Score = 180 bits (457), Expect = 1e-45
Identities = 96/141 (68%), Positives = 113/141 (80%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+EEE LQKKLKGTEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+++K+AQEKLE ++KKA+DAE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SESVKEAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKI 489
M +E EEK+
Sbjct: 121 DESERGMKVIENRAMKDEEKM 141
Score = 50.8 bits (120), Expect = 1e-06
Identities = 32/98 (32%), Positives = 55/98 (56%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +L+ + E + +RAE AES EE+ K V L L+ + + DKY
Sbjct: 163 EEVARKLVILEGELERSEERAEVAESKCGDLEEELKIVTNNLKSLEAQADKYSTKEDKYE 222
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 363
+ +K +EKL+ ++ +A AE VA L + I +E+E+
Sbjct: 223 EEIKLLEEKLKEAETRAEFAERSVAKLEKTIDDLEDEV 260
>ref|NP_001018007.1| tropomyosin alpha-1 chain isoform 2 [Homo sapiens].
Length = 284
Score = 147 bits (372), Expect = 7e-36
Identities = 80/141 (56%), Positives = 102/141 (72%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+EE++ +K L+ +EDE D+
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEEDIAAKEKLLRVSEDERDRV 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+ L A++ L +++ A+ AE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 LEELHKAEDSLLAAEEAAAKAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKI 489
M +E EEK+
Sbjct: 121 DESERGMKVIESRAQKDEEKM 141
Score = 54.3 bits (129), Expect = 1e-07
Identities = 31/111 (27%), Positives = 59/111 (53%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +++ D E A +RAE +E KC ++EEEL + LK E + +KY
Sbjct: 163 EEVARKLVIIESDLERAEERAELSEG-------KCAELEEELKTVTNNLKSLEAQAEKYS 215
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQK 402
Q +E++++ K +AE R + +E+ +D +E++A A ++
Sbjct: 216 QKEDRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEE 266
>ref|NP_001018020.1| tropomyosin alpha-1 chain isoform 7 [Homo sapiens].
Length = 284
Score = 147 bits (372), Expect = 7e-36
Identities = 80/141 (56%), Positives = 102/141 (72%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+EE++ +K L+ +EDE D+
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEEDIAAKEKLLRVSEDERDRV 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+ L A++ L +++ A+ AE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 LEELHKAEDSLLAAEEAAAKAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKI 489
M +E EEK+
Sbjct: 121 DESERGMKVIESRAQKDEEKM 141
Score = 49.3 bits (116), Expect = 4e-06
Identities = 30/112 (26%), Positives = 59/112 (52%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +++ D E A +RAE +E + EE+ + +++ L L + D+Y
Sbjct: 163 EEVARKLVIIESDLERAEERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDRYE 222
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKL 405
+ +K +KL+ ++ +A AE V L + I +EE++ A+E + Q L
Sbjct: 223 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEENLSMHQML 274
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.317 0.133 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 22,011,498
Number of extensions: 558208
Number of successful extensions: 4957
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 4569
Number of HSP's successfully gapped: 44
Length of query: 249
Length of database: 18,297,164
Length adjustment: 100
Effective length of query: 149
Effective length of database: 15,000,764
Effective search space: 2235113836
Effective search space used: 2235113836
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601S-067317
(748 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 355 2e-95
Sscrofa_Chr01 119 2e-24
gb|GL894998.2| Sus scrofa unplaced genomic scaffold ChrUScaf2882 84 1e-13
Sscrofa_Chr04 84 1e-13
>Sscrofa_Chr02
|| Length = 162569375
Score = 355 bits (179), Expect = 2e-95
Identities = 182/183 (99%)
Strand = Plus / Plus
Query: 1 ctcgacaccgacgccgctgccgccgcaggcccctccacgcccacaccccctacccactgc 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61150668 ctcgaccccgacgccgctgccgccgcaggcccctccacgcccacaccccctacccactgc 61150727
Query: 61 ccagccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61150728 ccagccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgcc 61150787
Query: 121 atcgaccgggccgagcaggcggagtcggataagaaagctgctgaggagaagtgcaagcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61150788 atcgaccgggccgagcaggcggagtcggataagaaagctgctgaggagaagtgcaagcag 61150847
Query: 181 gtg 183
|||
Sbjct: 61150848 gtg 61150850
Score = 226 bits (114), Expect = 1e-56
Identities = 126/130 (96%)
Strand = Plus / Plus
Query: 178 caggtggaggaggagctgacgcacctccagaagaagctgaaggggacagaggatgagctg 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61156130 caggtggaggaggagctgacgcacctccagaagaagctgaaggggacagaggatgagctg 61156189
Query: 238 gacaaatacttccagaacctgaaggacgcgcaggaaaagctggagttgagcaagaagaaa 297
|||||||||| | |||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 61156190 gacaaatactccgagaacctgaaggacgcgcaggaaaagctggagctgagcgagaagaaa 61156249
Query: 298 gcctccgacg 307
||||||||||
Sbjct: 61156250 gcctccgacg 61156259
Score = 210 bits (106), Expect = 8e-52
Identities = 127/134 (94%)
Strand = Plus / Plus
Query: 307 gccgaaggggatgtagcagctcttaatcggcgcatccaactcgttgaggaggagttggac 366
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 61161338 gccgaaggggatgtagcagctctcaatcggcgcatccaactcgttgaggaggagttggac 61161397
Query: 367 agggctcaggaacgactggccacagccctgcagaagcttgaggagggagaaaggggtggg 426
|||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct: 61161398 agggctcaggaacgactggccacagccctgcagaagcttgaggaggcagaaaaggctgca 61161457
Query: 427 gatgagatcgagag 440
||||||| ||||||
Sbjct: 61161458 gatgagagcgagag 61161471
>Sscrofa_Chr01
|| Length = 315321322
Score = 119 bits (60), Expect = 2e-24
Identities = 75/80 (93%)
Strand = Plus / Minus
Query: 65 ccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgccatcg 124
||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 264134556 ccatggatgccatcaagaagaagatgcagatgctaaagctggacaaggagaatgccatcg 264134497
Query: 125 accgggccgagcaggcggag 144
|||| || ||||||||||||
Sbjct: 264134496 accgtgctgagcaggcggag 264134477
Score = 99.6 bits (50), Expect = 2e-18
Identities = 101/118 (85%)
Strand = Plus / Minus
Query: 65 ccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgccatcg 124
||||||| |||||||||||||||||||| ||||| ||||| ||||||||||||||| | |
Sbjct: 120240068 ccatggacgccatcaagaagaagatgcaaatgctcaagctcgacaaggagaacgccttgg 120240009
Query: 125 accgggccgagcaggcggagtcggataagaaagctgctgaggagaagtgcaagcaggt 182
| || || |||||||||||| | |||||||| || || ||||| | | ||||||||||
Sbjct: 120240008 atcgagcggagcaggcggaggccgataagaaggcggcagaggacaggagcaagcaggt 120239951
Score = 65.9 bits (33), Expect = 3e-08
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 352 gaggaggagttggacagggctcaggaacgactggccacagccctgcagaagcttgaggag 411
||||||||| ||||| |||| ||||| || ||||||||||||||||| ||||| ||||||
Sbjct: 264130944 gaggaggagctggaccgggcgcaggagcgtctggccacagccctgcaaaagctggaggag 264130885
Query: 412 g 412
|
Sbjct: 264130884 g 264130884
>gb|GL894998.2| Sus scrofa unplaced genomic scaffold ChrUScaf2882
Length = 79217
Score = 83.8 bits (42), Expect = 1e-13
Identities = 48/50 (96%)
Strand = Plus / Minus
Query: 67 atggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaa 116
||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 15261 atggaggccatcaagaaaaagatgcagatgctgaagttggacaaggagaa 15212
Score = 58.0 bits (29), Expect = 7e-06
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 205 cagaagaagctgaaggggacagaggatgagctggacaaata 245
|||||||| || || ||||||||||||||||||||||||||
Sbjct: 14331 cagaagaaactaaaagggacagaggatgagctggacaaata 14291
>Sscrofa_Chr04
|| Length = 143465943
Score = 83.8 bits (42), Expect = 1e-13
Identities = 48/50 (96%)
Strand = Plus / Plus
Query: 67 atggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaa 116
||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 104459762 atggaggccatcaagaaaaagatgcagatgctgaagttggacaaggagaa 104459811
Score = 58.0 bits (29), Expect = 7e-06
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 205 cagaagaagctgaaggggacagaggatgagctggacaaata 245
|||||||| || || ||||||||||||||||||||||||||
Sbjct: 104460513 cagaagaaactaaaagggacagaggatgagctggacaaata 104460553
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,393,475
Number of extensions: 796
Number of successful extensions: 796
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 796
Number of HSP's successfully gapped: 10
Length of query: 748
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 727
Effective length of database: 2,808,413,156
Effective search space: 2041716364412
Effective search space used: 2041716364412
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)