Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601S-097049
(997 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_866109.1| PREDICTED: similar to tropomyosin 1, alpha isof... 179 4e-45
Alignment gi|XP_852641.1| PREDICTED: similar to tropomyosin 1, alpha isof... 179 4e-45
Alignment gi|XP_866095.1| PREDICTED: similar to tropomyosin 1 (alpha) iso... 176 2e-44
Alignment gi|XP_865148.1| PREDICTED: similar to tropomyosin 1 alpha chain... 170 2e-42
Alignment gi|XP_865805.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 159 5e-39
Alignment gi|XP_865093.1| PREDICTED: similar to tropomyosin 1 alpha chain... 152 6e-37
Alignment gi|XP_865836.1| PREDICTED: similar to tropomyosin 3, gamma isof... 150 2e-36
Alignment gi|XP_865128.1| PREDICTED: similar to tropomyosin 1 alpha chain... 147 2e-35
Alignment gi|XP_541810.2| PREDICTED: similar to tropomyosin 3 isoform 2 i... 142 4e-34
Alignment gi|XP_865919.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 142 4e-34
>ref|XP_866109.1| PREDICTED: similar to tropomyosin 1, alpha isoform 4 [Canis
familiaris].
Length = 328
Score = 179 bits (454), Expect = 4e-45
Identities = 113/217 (52%), Positives = 117/217 (53%), Gaps = 36/217 (16%)
Frame = +2
Query: 149 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 328
Q +L+ ++ AEGDVAALNRRIQLVEEELDRAQER RGM
Sbjct: 112 QEKLELTEKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 171
Query: 329 KVIENRAMKDEEKMEIQE------------------------------------RAEVSE 400
KVIENRAMKDEEKMEIQE RAEVSE
Sbjct: 172 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELERAEERAEVSE 231
Query: 401 LKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 580
LKCGDLEEELKNVTNNL SDKLK
Sbjct: 232 LKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYEEEIKLLSDKLKEAETRAEFAERTVA 291
Query: 581 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 691
KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI
Sbjct: 292 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 328
>ref|XP_852641.1| PREDICTED: similar to tropomyosin 1, alpha isoform 2 [Canis
familiaris].
Length = 284
Score = 179 bits (454), Expect = 4e-45
Identities = 113/217 (52%), Positives = 117/217 (53%), Gaps = 36/217 (16%)
Frame = +2
Query: 149 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 328
Q +L+ ++ AEGDVAALNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLELTEKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 329 KVIENRAMKDEEKMEIQE------------------------------------RAEVSE 400
KVIENRAMKDEEKMEIQE RAEVSE
Sbjct: 128 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELERAEERAEVSE 187
Query: 401 LKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 580
LKCGDLEEELKNVTNNL SDKLK
Sbjct: 188 LKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYEEEIKLLSDKLKEAETRAEFAERTVA 247
Query: 581 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 691
KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI
Sbjct: 248 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 284
>ref|XP_866095.1| PREDICTED: similar to tropomyosin 1 (alpha) isoform 3 [Canis
familiaris].
Length = 279
Score = 176 bits (447), Expect = 2e-44
Identities = 111/205 (54%), Positives = 112/205 (54%), Gaps = 36/205 (17%)
Frame = +2
Query: 185 KAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEE 364
+AEGDVAALNRRIQLVEEELDRAQER RGMKVIENRAMKDEE
Sbjct: 75 EAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRAMKDEE 134
Query: 365 KMEIQE------------------------------------RAEVSELKCGDLEEELKN 436
KMEIQE RAEVSELKCGDLEEELKN
Sbjct: 135 KMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELERAEERAEVSELKCGDLEEELKN 194
Query: 437 VTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEK 616
VTNNL SDKLK KLEKTIDDLEEK
Sbjct: 195 VTNNLKSLEAASEKYSEKEDKYEEEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEK 254
Query: 617 LAQAKEENVGLHQTLDQTLNELNCI 691
LAQAKEENVGLHQTLDQTLNELNCI
Sbjct: 255 LAQAKEENVGLHQTLDQTLNELNCI 279
>ref|XP_865148.1| PREDICTED: similar to tropomyosin 1 alpha chain isoform 6 isoform
19 [Canis familiaris].
Length = 248
Score = 170 bits (431), Expect = 2e-42
Identities = 113/246 (45%), Positives = 124/246 (50%), Gaps = 36/246 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG +SLEAV+RKI LQRELD ER+ RE AE DVA+LNRRIQLVE
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDYERKLRETAEADVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIE+RA KDEEKMEIQ
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE+SE KC +LEEELK VTNNL
Sbjct: 121 DADRKYEEVARKLVIIESDLERAEERAELSESKCAELEEELKTVTNNLKSLEAQAEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
SDKLK KLEK+IDDLEEK+A AKEEN+ +HQ LDQ
Sbjct: 181 KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQ 240
Query: 668 TLNELN 685
TL ELN
Sbjct: 241 TLLELN 246
>ref|XP_865805.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 17 [Canis
familiaris].
Length = 248
Score = 159 bits (401), Expect = 5e-39
Identities = 104/246 (42%), Positives = 123/246 (50%), Gaps = 36/246 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG+ ++EAVKRKI LQRE++GER RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIENRA+KDEEKME+Q
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE++E KC +LEEELKNVTNNL
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
+DKLK KLEKTIDDLE+KL KEE++ + LDQ
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 240
Query: 668 TLNELN 685
TL +LN
Sbjct: 241 TLLDLN 246
>ref|XP_865093.1| PREDICTED: similar to tropomyosin 1 alpha chain isoform 4 isoform
16 [Canis familiaris].
Length = 248
Score = 152 bits (383), Expect = 6e-37
Identities = 105/246 (42%), Positives = 119/246 (48%), Gaps = 36/246 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG +SLEAV+RKI LQRELD ER+ RE AE DVA+LNRRIQLVE
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDYERKLRETAEADVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIE+RA KDEEKMEIQ
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE+SE + LEE+L+ + L
Sbjct: 121 DADRKYEEVARKLVIIESDLERAEERAELSESQVRQLEEQLRIMDQTLKALMAAEDKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
SDKLK KLEK+IDDLEEK+A AKEEN+ +HQ LDQ
Sbjct: 181 KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQ 240
Query: 668 TLNELN 685
TL ELN
Sbjct: 241 TLLELN 246
>ref|XP_865836.1| PREDICTED: similar to tropomyosin 3, gamma isoform 19 [Canis
familiaris].
Length = 248
Score = 150 bits (379), Expect = 2e-36
Identities = 99/248 (39%), Positives = 120/248 (48%), Gaps = 36/248 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG+ ++EAVKRKI LQRE++GER RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIENRA+KDEEKME+Q
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE++E KC +LEEELKNVTNNL
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
+DKLK KLEKTIDDLE++L K + + + LD
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDELYAQKLKYKAISEELDH 240
Query: 668 TLNELNCI 691
LN++ I
Sbjct: 241 ALNDMTSI 248
>ref|XP_865128.1| PREDICTED: similar to tropomyosin 1 alpha chain isoform 6 isoform
18 [Canis familiaris].
Length = 248
Score = 147 bits (371), Expect = 2e-35
Identities = 102/248 (41%), Positives = 117/248 (47%), Gaps = 36/248 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG +SLEAV+RKI LQRELD ER+ RE AE DVA+LNRRIQLVE
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDYERKLRETAEADVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIE+RA KDEEKMEIQ
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE+SE KC +LEEELK VTNNL
Sbjct: 121 DADRKYEEVARKLVIIESDLERAEERAELSESKCAELEEELKTVTNNLKSLEAQAEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
SDKLK KLEK+IDDLE++L K + + + LD
Sbjct: 181 KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDH 240
Query: 668 TLNELNCI 691
LN++ I
Sbjct: 241 ALNDMTSI 248
>ref|XP_541810.2| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 2 [Canis
familiaris].
Length = 248
Score = 142 bits (359), Expect = 4e-34
Identities = 94/246 (38%), Positives = 120/246 (48%), Gaps = 36/246 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG+ ++EAVKRKI LQRE++GER RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIENRA+KDEEKME+Q
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE++E +C +++E+++ + NL
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
+DKLK KLEKTIDDLE+KL KEE++ + LDQ
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 240
Query: 668 TLNELN 685
TL +LN
Sbjct: 241 TLLDLN 246
>ref|XP_865919.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 25 [Canis
familiaris].
Length = 248
Score = 142 bits (359), Expect = 4e-34
Identities = 94/246 (38%), Positives = 120/246 (48%), Gaps = 36/246 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG+ ++EAVKRKI LQRE++GER RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIENRA+KDEEKME+Q
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE++E +C +++E+++ + NL
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
+DKLK KLEKTIDDLE+KL KEE++ + LDQ
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 240
Query: 668 TLNELN 685
TL +LN
Sbjct: 241 TLLDLN 246
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 24,997,578
Number of extensions: 519353
Number of successful extensions: 2593
Number of sequences better than 1.0e-05: 81
Number of HSP's gapped: 2431
Number of HSP's successfully gapped: 125
Length of query: 332
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 229
Effective length of database: 15,440,896
Effective search space: 3535965184
Effective search space used: 3535965184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601S-097049
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601S-097049
(997 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001094632.1| tropomyosin alpha-4 chain [Bos taurus]. 179 3e-45
Alignment gi|XP_002699032.1| PREDICTED: tropomyosin 4-like [Bos taurus]. 139 5e-33
Alignment gi|XP_589950.1| PREDICTED: tropomyosin 4 isoform 1 [Bos taurus]. 139 5e-33
Alignment gi|NP_001011674.1| tropomyosin alpha-3 chain [Bos taurus]. 122 6e-28
Alignment gi|NP_001013608.1| tropomyosin alpha-1 chain [Bos taurus]. 118 7e-27
Alignment gi|XP_002688135.1| PREDICTED: tropomyosin 4-like [Bos taurus]. 112 4e-25
Alignment gi|XP_874820.3| PREDICTED: tropomyosin 4 isoform 2 [Bos taurus]. 112 4e-25
Alignment gi|XP_002688284.1| PREDICTED: tropomyosin 4-like [Bos taurus]. 112 5e-25
Alignment gi|XP_001250860.3| PREDICTED: tropomyosin 4 [Bos taurus]. 112 5e-25
Alignment gi|XP_001252597.2| PREDICTED: tropomyosin 4 [Bos taurus]. 112 5e-25
>ref|NP_001094632.1| tropomyosin alpha-4 chain [Bos taurus].
Length = 284
Score = 179 bits (454), Expect = 3e-45
Identities = 113/217 (52%), Positives = 117/217 (53%), Gaps = 36/217 (16%)
Frame = +2
Query: 149 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 328
Q +L+ ++ AEGDVAALNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLELTEKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 329 KVIENRAMKDEEKMEIQE------------------------------------RAEVSE 400
KVIENRAMKDEEKMEIQE RAEVSE
Sbjct: 128 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELERAEERAEVSE 187
Query: 401 LKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 580
LKCGDLEEELKNVTNNL SDKLK
Sbjct: 188 LKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYEEEIKLLSDKLKEAETRAEFAERTVA 247
Query: 581 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 691
KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI
Sbjct: 248 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 284
>ref|XP_002699032.1| PREDICTED: tropomyosin 4-like [Bos taurus].
Length = 248
Score = 139 bits (349), Expect = 5e-33
Identities = 93/246 (37%), Positives = 119/246 (48%), Gaps = 36/246 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG+ ++EAVKRKI LQRE++GE RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGIPTIEAVKRKIQVLQQQADDAQERAERLQREVEGEGRAREQAEAEVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIEN+A+KDEEKME+Q
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENQALKDEEKMELQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE++E +C +++E++K + NL
Sbjct: 121 EADRKYEEVARKLVIIDGDLEGTEERAELAESRCREMDEQIKLMDQNLKCLSAAEEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
+DKLK KLEKTIDDLE+KL KEE++ + LDQ
Sbjct: 181 KEDKYKEEIKILTDKLKEAETRAEFAERLVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 240
Query: 668 TLNELN 685
TL +LN
Sbjct: 241 TLLDLN 246
>ref|XP_589950.1| PREDICTED: tropomyosin 4 isoform 1 [Bos taurus].
Length = 248
Score = 139 bits (349), Expect = 5e-33
Identities = 93/246 (37%), Positives = 119/246 (48%), Gaps = 36/246 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG+ ++EAVKRKI LQRE++GE RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGIPTIEAVKRKIQVLQQQADDAQERAERLQREVEGEGRAREQAEAEVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIEN+A+KDEEKME+Q
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENQALKDEEKMELQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE++E +C +++E++K + NL
Sbjct: 121 EADRKYEEVARKLVIIDGDLEGTEERAELAESRCREMDEQIKLMDQNLKCLSAAEEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
+DKLK KLEKTIDDLE+KL KEE++ + LDQ
Sbjct: 181 KEDKYKEEIKILTDKLKEAETRAEFAERLVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 240
Query: 668 TLNELN 685
TL +LN
Sbjct: 241 TLLDLN 246
>ref|NP_001011674.1| tropomyosin alpha-3 chain [Bos taurus].
Length = 284
Score = 122 bits (305), Expect = 6e-28
Identities = 85/244 (34%), Positives = 109/244 (44%), Gaps = 36/244 (14%)
Frame = +2
Query: 68 NSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVEEELD 247
+ L A+++K+ Q +L+ ++ AE +VA+LNRRIQLVEEELD
Sbjct: 41 DELAAMQKKLKGTEDELDKYSEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELD 100
Query: 248 RAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ---------------- 379
RAQER RGMKVIENRA+KDEEKME+Q
Sbjct: 101 RAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADR 160
Query: 380 --------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXX 499
ERAE++E KC +LEEELKNVTNNL
Sbjct: 161 KYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDK 220
Query: 500 XXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNE 679
+DKLK KLEKTIDDLE++L K + + + LD LN+
Sbjct: 221 YEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDELYAQKLKYKAISEELDHALND 280
Query: 680 LNCI 691
+ I
Sbjct: 281 MTSI 284
>ref|NP_001013608.1| tropomyosin alpha-1 chain [Bos taurus].
Length = 284
Score = 118 bits (296), Expect = 7e-27
Identities = 83/217 (38%), Positives = 99/217 (45%), Gaps = 36/217 (16%)
Frame = +2
Query: 149 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 328
Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 329 KVIENRAMKDEEKMEIQ------------------------------------ERAEVSE 400
KVIE+RA KDEEKMEIQ ERAE+SE
Sbjct: 128 KVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSE 187
Query: 401 LKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 580
KC +LEEELK VTNNL SDKLK
Sbjct: 188 GKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVT 247
Query: 581 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 691
KLEK+IDDLE++L K + + + LD LN++ I
Sbjct: 248 KLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI 284
>ref|XP_002688135.1| PREDICTED: tropomyosin 4-like [Bos taurus].
Length = 248
Score = 112 bits (281), Expect = 4e-25
Identities = 82/246 (33%), Positives = 112/246 (45%), Gaps = 36/246 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MA + EA+K KI LQ+++DGER RE+AE +V +LNRRIQLVE
Sbjct: 1 MAAIAVTEAMKCKIQVLQQQADDAEERAKRLQQKVDGERWAREQAEAEVVSLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EEL+RAQER R MKVIEN+A+KDEEKME+Q
Sbjct: 61 EELNRAQERLATALQKLEEAEKAADESERVMKVIENQALKDEEKMELQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE+++ +C + E+++ + +L
Sbjct: 121 EAHRKYEEVARKLVIIEGDLERTEERAELAQSRCRKMGEQIRLMDQHLKCLSAAEEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
++KLK KLEKTIDDLE+KL KEE++ + L+Q
Sbjct: 181 KEDKYEEEIKILTEKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEDLCTQRMLNQ 240
Query: 668 TLNELN 685
TL +LN
Sbjct: 241 TLLDLN 246
>ref|XP_874820.3| PREDICTED: tropomyosin 4 isoform 2 [Bos taurus].
Length = 248
Score = 112 bits (281), Expect = 4e-25
Identities = 82/246 (33%), Positives = 112/246 (45%), Gaps = 36/246 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MA + EA+K KI LQ+++DGER RE+AE +V +LNRRIQLVE
Sbjct: 1 MAAIAVTEAMKCKIQVLQQQADDAEERAKRLQQKVDGERWAREQAEAEVVSLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EEL+RAQER R MKVIEN+A+KDEEKME+Q
Sbjct: 61 EELNRAQERLATALQKLEEAEKAADESERVMKVIENQALKDEEKMELQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE+++ +C + E+++ + +L
Sbjct: 121 EAHRKYEEVARKLVIIEGDLERTEERAELAQSRCRKMGEQIRLMDQHLKCLSAAEEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
++KLK KLEKTIDDLE+KL KEE++ + L+Q
Sbjct: 181 KEDKYEEEIKILTEKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEDLCTQRMLNQ 240
Query: 668 TLNELN 685
TL +LN
Sbjct: 241 TLLDLN 246
>ref|XP_002688284.1| PREDICTED: tropomyosin 4-like [Bos taurus].
Length = 248
Score = 112 bits (280), Expect = 5e-25
Identities = 83/246 (33%), Positives = 111/246 (45%), Gaps = 36/246 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MA + EA+K KI LQ++++GER RE+AE +V +LNRRIQLVE
Sbjct: 1 MAAIAVTEAMKCKIQVLQQQADDAEERAKCLQQKVEGERWAREQAEAEVVSLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EEL+RAQER R MKVIEN+A+KDEEKME+Q
Sbjct: 61 EELNRAQERLATELQKLEEAEKAADESERVMKVIENQALKDEEKMELQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE++E +C + E+ + + +L
Sbjct: 121 EAHRKYEEVARKLVIIEGDLERTEERAELAESRCRKMGEQTRLMDQHLKCLSAAEEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
+DKLK KLEKTIDDLE+KL KEE++ + L+Q
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEDLCTQRMLNQ 240
Query: 668 TLNELN 685
TL +LN
Sbjct: 241 TLLDLN 246
>ref|XP_001250860.3| PREDICTED: tropomyosin 4 [Bos taurus].
Length = 248
Score = 112 bits (280), Expect = 5e-25
Identities = 83/246 (33%), Positives = 111/246 (45%), Gaps = 36/246 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MA + EA+K KI LQ++++GER RE+AE +V +LNRRIQLVE
Sbjct: 1 MAAIAVTEAMKCKIQVLQQQADDAEERAKCLQQKVEGERWAREQAEAEVVSLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EEL+RAQER R MKVIEN+A+KDEEKME+Q
Sbjct: 61 EELNRAQERLATELQKLEEAEKAADESERVMKVIENQALKDEEKMELQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE++E +C + E+ + + +L
Sbjct: 121 EAHRKYEEVARKLVIIEGDLERTEERAELAESRCRKMGEQTRLMDQHLKCLSAAEEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
+DKLK KLEKTIDDLE+KL KEE++ + L+Q
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEDLCTQRMLNQ 240
Query: 668 TLNELN 685
TL +LN
Sbjct: 241 TLLDLN 246
>ref|XP_001252597.2| PREDICTED: tropomyosin 4 [Bos taurus].
Length = 248
Score = 112 bits (280), Expect = 5e-25
Identities = 83/246 (33%), Positives = 111/246 (45%), Gaps = 36/246 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MA + EA+K KI LQ++++GER RE+AE +V +LNRRIQLVE
Sbjct: 1 MAAIAVTEAMKCKIQVLQQQADDAEERAKCLQQKVEGERWAREQAEAEVVSLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EEL+RAQER R MKVIEN+A+KDEEKME+Q
Sbjct: 61 EELNRAQERLATELQKLEEAEKAADESERVMKVIENQALKDEEKMELQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE++E +C + E+ + + +L
Sbjct: 121 EAHRKYEEVARKLVIIEGDLERTEERAELAESRCRKMGEQTRLMDQHLKCLSAAEEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
+DKLK KLEKTIDDLE+KL KEE++ + L+Q
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEDLCTQRMLNQ 240
Query: 668 TLNELN 685
TL +LN
Sbjct: 241 TLLDLN 246
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 23,844,702
Number of extensions: 499404
Number of successful extensions: 2054
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 2034
Number of HSP's successfully gapped: 23
Length of query: 332
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 229
Effective length of database: 14,273,310
Effective search space: 3268587990
Effective search space used: 3268587990
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601S-097049
(997 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999500.1| tropomyosin alpha-4 chain [Sus scrofa]. 224 4e-59
Alignment gi|NP_001001632.1| tropomyosin alpha-3 chain [Sus scrofa]. 142 2e-34
Alignment gi|NP_001123419.1| tropomyosin beta chain [Sus scrofa]. 127 7e-30
Alignment gi|XP_003361667.1| PREDICTED: tropomyosin alpha-3 chain-like is... 120 9e-28
Alignment gi|NP_001090952.1| tropomyosin alpha-1 chain [Sus scrofa]. 118 4e-27
Alignment gi|XP_003361668.1| PREDICTED: tropomyosin alpha-3 chain-like is... 104 7e-23
>ref|NP_999500.1| tropomyosin alpha-4 chain [Sus scrofa].
Length = 248
Score = 224 bits (572), Expect = 4e-59
Identities = 140/248 (56%), Positives = 140/248 (56%), Gaps = 36/248 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAGLNSLEAVKRKI GLQRELDGERERREKAEGDVAALNRRIQLVE
Sbjct: 1 MAGLNSLEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIENRAMKDEEKMEIQ
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAEVSELKCGDLEEELKNVTNNL
Sbjct: 121 EADRKYEEVARKLVILEGELERAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSE 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
SDKLK KLEKTIDDLEEKLAQAKEENVGLHQTLDQ
Sbjct: 181 KEDKYEEEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 240
Query: 668 TLNELNCI 691
TLNELNCI
Sbjct: 241 TLNELNCI 248
>ref|NP_001001632.1| tropomyosin alpha-3 chain [Sus scrofa].
Length = 248
Score = 142 bits (359), Expect = 2e-34
Identities = 94/246 (38%), Positives = 120/246 (48%), Gaps = 36/246 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG+ ++EAVKRKI LQRE++GER RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIENRA+KDEEKME+Q
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE++E +C +++E+++ + NL
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
+DKLK KLEKTIDDLE+KL KEE++ + LDQ
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 240
Query: 668 TLNELN 685
TL +LN
Sbjct: 241 TLLDLN 246
>ref|NP_001123419.1| tropomyosin beta chain [Sus scrofa].
Length = 287
Score = 127 bits (320), Expect = 7e-30
Identities = 88/218 (40%), Positives = 101/218 (46%), Gaps = 39/218 (17%)
Frame = +2
Query: 149 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 328
Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQER RG+
Sbjct: 68 QEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGL 127
Query: 329 KVIENRAMKDEEKMEIQ---------------------------------------ERAE 391
KVIENRAMKDEEKME+Q ERAE
Sbjct: 128 KVIENRAMKDEEKMELQEMQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSEERAE 187
Query: 392 VSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXX 571
V+E + LEEEL+ + L +KLK
Sbjct: 188 VAESRARQLEEELRTMDQALKSLMASEEEYSTKEDKYEEEIKLLEEKLKEAETRAEFAER 247
Query: 572 XXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 685
KLEKTIDDLEE LA AKEENV +HQTLDQTL ELN
Sbjct: 248 SVAKLEKTIDDLEETLASAKEENVEIHQTLDQTLLELN 285
>ref|XP_003361667.1| PREDICTED: tropomyosin alpha-3 chain-like isoform 1 [Sus scrofa].
Length = 284
Score = 120 bits (302), Expect = 9e-28
Identities = 84/241 (34%), Positives = 108/241 (44%), Gaps = 36/241 (14%)
Frame = +2
Query: 68 NSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVEEELD 247
+ L A+++K+ Q +L+ ++ AE +VA+LNRRIQLVEEELD
Sbjct: 41 DELAAMQKKLKGTEDELDKYSEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELD 100
Query: 248 RAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ---------------- 379
RAQER RGMKVIENRA+KDEEKME+Q
Sbjct: 101 RAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADR 160
Query: 380 --------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXX 499
ERAE++E KC +LEEELKNVTNNL
Sbjct: 161 KYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDK 220
Query: 500 XXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNE 679
+DKLK KLEKTIDDLE++L K + + + LD LN+
Sbjct: 221 YEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDELYAQKLKYKAISEELDHALND 280
Query: 680 L 682
+
Sbjct: 281 M 281
>ref|NP_001090952.1| tropomyosin alpha-1 chain [Sus scrofa].
Length = 284
Score = 118 bits (296), Expect = 4e-27
Identities = 83/217 (38%), Positives = 99/217 (45%), Gaps = 36/217 (16%)
Frame = +2
Query: 149 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 328
Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 329 KVIENRAMKDEEKMEIQ------------------------------------ERAEVSE 400
KVIE+RA KDEEKMEIQ ERAE+SE
Sbjct: 128 KVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSE 187
Query: 401 LKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 580
KC +LEEELK VTNNL SDKLK
Sbjct: 188 GKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVT 247
Query: 581 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 691
KLEK+IDDLE++L K + + + LD LN++ I
Sbjct: 248 KLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI 284
>ref|XP_003361668.1| PREDICTED: tropomyosin alpha-3 chain-like isoform 2 [Sus scrofa].
Length = 284
Score = 104 bits (260), Expect = 7e-23
Identities = 74/241 (30%), Positives = 105/241 (43%), Gaps = 36/241 (14%)
Frame = +2
Query: 68 NSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVEEELD 247
+ L A+++K+ Q +L+ ++ AE +VA+LNRRIQLVEEELD
Sbjct: 41 DELAAMQKKLKGTEDELDKYSEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELD 100
Query: 248 RAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ---------------- 379
RAQER RGMKVIENRA+KDEEKME+Q
Sbjct: 101 RAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADR 160
Query: 380 --------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXX 499
ERAE++E +C +++E+++ + NL
Sbjct: 161 KYEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDK 220
Query: 500 XXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNE 679
+DKLK KLEKTIDDLE++L K + + + LD LN+
Sbjct: 221 YEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDELYAQKLKYKAISEELDHALND 280
Query: 680 L 682
+
Sbjct: 281 M 281
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 15,323,301
Number of extensions: 319562
Number of successful extensions: 1266
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1248
Number of HSP's successfully gapped: 11
Length of query: 332
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 233
Effective length of database: 8,879,129
Effective search space: 2068837057
Effective search space used: 2068837057
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601S-097049
(997 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003281.1| tropomyosin alpha-4 chain isoform 2 [Homo sapie... 224 7e-59
Alignment gi|NP_001138632.1| tropomyosin alpha-4 chain isoform 1 [Homo sa... 179 4e-45
Alignment gi|NP_001036816.1| tropomyosin alpha-3 chain isoform 4 [Homo sa... 159 5e-39
Alignment gi|NP_001036818.1| tropomyosin alpha-3 chain isoform 5 [Homo sa... 149 3e-36
Alignment gi|NP_001018008.1| tropomyosin alpha-1 chain isoform 6 [Homo sa... 146 3e-35
Alignment gi|NP_705935.1| tropomyosin alpha-3 chain isoform 2 [Homo sapie... 142 4e-34
Alignment gi|NP_001018007.1| tropomyosin alpha-1 chain isoform 2 [Homo sa... 141 8e-34
Alignment gi|NP_001018004.1| tropomyosin alpha-1 chain isoform 3 [Homo sa... 141 8e-34
Alignment gi|NP_001036817.1| tropomyosin alpha-3 chain isoform 3 [Homo sa... 133 2e-31
Alignment gi|NP_998839.1| tropomyosin beta chain isoform 2 [Homo sapiens]. 130 2e-30
>ref|NP_003281.1| tropomyosin alpha-4 chain isoform 2 [Homo sapiens].
Length = 248
Score = 224 bits (572), Expect = 7e-59
Identities = 140/248 (56%), Positives = 140/248 (56%), Gaps = 36/248 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAGLNSLEAVKRKI GLQRELDGERERREKAEGDVAALNRRIQLVE
Sbjct: 1 MAGLNSLEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIENRAMKDEEKMEIQ
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAEVSELKCGDLEEELKNVTNNL
Sbjct: 121 EADRKYEEVARKLVILEGELERAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSE 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
SDKLK KLEKTIDDLEEKLAQAKEENVGLHQTLDQ
Sbjct: 181 KEDKYEEEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 240
Query: 668 TLNELNCI 691
TLNELNCI
Sbjct: 241 TLNELNCI 248
>ref|NP_001138632.1| tropomyosin alpha-4 chain isoform 1 [Homo sapiens].
Length = 284
Score = 179 bits (454), Expect = 4e-45
Identities = 113/217 (52%), Positives = 117/217 (53%), Gaps = 36/217 (16%)
Frame = +2
Query: 149 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 328
Q +L+ ++ AEGDVAALNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLELTEKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 329 KVIENRAMKDEEKMEIQE------------------------------------RAEVSE 400
KVIENRAMKDEEKMEIQE RAEVSE
Sbjct: 128 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELERAEERAEVSE 187
Query: 401 LKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 580
LKCGDLEEELKNVTNNL SDKLK
Sbjct: 188 LKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYEEEIKLLSDKLKEAETRAEFAERTVA 247
Query: 581 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 691
KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI
Sbjct: 248 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 284
>ref|NP_001036816.1| tropomyosin alpha-3 chain isoform 4 [Homo sapiens].
Length = 248
Score = 159 bits (401), Expect = 5e-39
Identities = 104/246 (42%), Positives = 123/246 (50%), Gaps = 36/246 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG+ ++EAVKRKI LQRE++GER RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIENRA+KDEEKME+Q
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE++E KC +LEEELKNVTNNL
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
+DKLK KLEKTIDDLE+KL KEE++ + LDQ
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 240
Query: 668 TLNELN 685
TL +LN
Sbjct: 241 TLLDLN 246
>ref|NP_001036818.1| tropomyosin alpha-3 chain isoform 5 [Homo sapiens].
Length = 247
Score = 149 bits (377), Expect = 3e-36
Identities = 101/245 (41%), Positives = 118/245 (48%), Gaps = 36/245 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG+ ++EAVKRKI LQRE++GER RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIENRA+KDEEKME+Q
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE++E KC +LEEELKNVTNNL
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
+DKLK KLEKTIDDLEE+L E N L L
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEERLYSQLERNRLLSNELKL 240
Query: 668 TLNEL 682
TL++L
Sbjct: 241 TLHDL 245
>ref|NP_001018008.1| tropomyosin alpha-1 chain isoform 6 [Homo sapiens].
Length = 245
Score = 146 bits (369), Expect = 3e-35
Identities = 104/244 (42%), Positives = 115/244 (47%), Gaps = 36/244 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG +SLEAV+RKI LQRELD ER+ RE AE DVA+LNRRIQLVE
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGTLQRELDHERKLRETAEADVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIE+RA KDEEKMEIQ
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE+SE KC +LEEELK VTNNL
Sbjct: 121 DADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
SDKLK KLEK+IDDLE++L Q E+N L L
Sbjct: 181 KEDRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDQLYQQLEQNRRLTNELKL 240
Query: 668 TLNE 679
LNE
Sbjct: 241 ALNE 244
>ref|NP_705935.1| tropomyosin alpha-3 chain isoform 2 [Homo sapiens].
Length = 248
Score = 142 bits (359), Expect = 4e-34
Identities = 94/246 (38%), Positives = 120/246 (48%), Gaps = 36/246 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG+ ++EAVKRKI LQRE++GER RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIENRA+KDEEKME+Q
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE++E +C +++E+++ + NL
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
+DKLK KLEKTIDDLE+KL KEE++ + LDQ
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 240
Query: 668 TLNELN 685
TL +LN
Sbjct: 241 TLLDLN 246
>ref|NP_001018007.1| tropomyosin alpha-1 chain isoform 2 [Homo sapiens].
Length = 284
Score = 141 bits (356), Expect = 8e-34
Identities = 94/207 (45%), Positives = 102/207 (49%), Gaps = 36/207 (17%)
Frame = +2
Query: 173 ERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAM 352
E KAE DVA+LNRRIQLVEEELDRAQER RGMKVIE+RA
Sbjct: 76 EAAAKAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQ 135
Query: 353 KDEEKMEIQE------------------------------------RAEVSELKCGDLEE 424
KDEEKMEIQE RAE+SE KC +LEE
Sbjct: 136 KDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEE 195
Query: 425 ELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDD 604
ELK VTNNL SDKLK KLEK+IDD
Sbjct: 196 ELKTVTNNLKSLEAQAEKYSQKEDRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDD 255
Query: 605 LEEKLAQAKEENVGLHQTLDQTLNELN 685
LEEK+A AKEEN+ +HQ LDQTL ELN
Sbjct: 256 LEEKVAHAKEENLSMHQMLDQTLLELN 282
>ref|NP_001018004.1| tropomyosin alpha-1 chain isoform 3 [Homo sapiens].
Length = 284
Score = 141 bits (356), Expect = 8e-34
Identities = 94/215 (43%), Positives = 106/215 (49%), Gaps = 36/215 (16%)
Frame = +2
Query: 149 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 328
Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 329 KVIENRAMKDEEKMEIQE------------------------------------RAEVSE 400
KVIE+RA KDEEKMEIQE RAE+SE
Sbjct: 128 KVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSE 187
Query: 401 LKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 580
KC +LEEELK VTNNL SDKLK
Sbjct: 188 GKCAELEEELKTVTNNLKSLEAQAEKYSQKEDRYEEEIKVLSDKLKEAETRAEFAERSVT 247
Query: 581 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 685
KLEK+IDDLEEK+A AKEEN+ +HQ LDQTL ELN
Sbjct: 248 KLEKSIDDLEEKVAHAKEENLSMHQMLDQTLLELN 282
>ref|NP_001036817.1| tropomyosin alpha-3 chain isoform 3 [Homo sapiens].
Length = 247
Score = 133 bits (335), Expect = 2e-31
Identities = 91/245 (37%), Positives = 115/245 (46%), Gaps = 36/245 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG+ ++EAVKRKI LQRE++GER RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIENRA+KDEEKME+Q
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE++E +C +++E+++ + NL
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
+DKLK KLEKTIDDLEE+L E N L L
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEERLYSQLERNRLLSNELKL 240
Query: 668 TLNEL 682
TL++L
Sbjct: 241 TLHDL 245
>ref|NP_998839.1| tropomyosin beta chain isoform 2 [Homo sapiens].
Length = 284
Score = 130 bits (326), Expect = 2e-30
Identities = 89/215 (41%), Positives = 101/215 (46%), Gaps = 36/215 (16%)
Frame = +2
Query: 149 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 328
Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 329 KVIENRAMKDEEKMEIQ------------------------------------ERAEVSE 400
KVIENRAMKDEEKME+Q ERAEV+E
Sbjct: 128 KVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSEERAEVAE 187
Query: 401 LKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 580
+ LEEEL+ + L +KLK
Sbjct: 188 SRARQLEEELRTMDQALKSLMASEEEYSTKEDKYEEEIKLLEEKLKEAETRAEFAERSVA 247
Query: 581 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 685
KLEKTIDDLEE LA AKEENV +HQTLDQTL ELN
Sbjct: 248 KLEKTIDDLEETLASAKEENVEIHQTLDQTLLELN 282
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 24,506,883
Number of extensions: 510768
Number of successful extensions: 2208
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 2160
Number of HSP's successfully gapped: 30
Length of query: 332
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 229
Effective length of database: 14,901,872
Effective search space: 3412528688
Effective search space used: 3412528688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601S-097049
(997 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001001491.1| tropomyosin alpha-4 chain [Mus musculus]. 219 3e-57
Alignment gi|NP_001157724.1| tropomyosin alpha-1 chain isoform 6 [Mus mus... 170 2e-42
Alignment gi|NP_001157725.1| tropomyosin alpha-1 chain isoform 7 [Mus mus... 151 7e-37
Alignment gi|NP_001157726.1| tropomyosin alpha-1 chain isoform 8 [Mus mus... 147 2e-35
Alignment gi|NP_001157728.1| tropomyosin alpha-1 chain isoform 10 [Mus mu... 145 5e-35
Alignment gi|NP_001157721.1| tropomyosin alpha-1 chain isoform 2 [Mus mus... 141 7e-34
Alignment gi|NP_077745.2| tropomyosin alpha-1 chain isoform 3 [Mus muscul... 141 7e-34
Alignment gi|NP_001157722.1| tropomyosin alpha-1 chain isoform 4 [Mus mus... 123 3e-28
Alignment gi|NP_033442.2| tropomyosin beta chain [Mus musculus]. 122 3e-28
Alignment gi|NP_001157720.1| tropomyosin alpha-1 chain isoform 1 [Mus mus... 118 6e-27
>ref|NP_001001491.1| tropomyosin alpha-4 chain [Mus musculus].
Length = 248
Score = 219 bits (558), Expect = 3e-57
Identities = 136/248 (54%), Positives = 139/248 (56%), Gaps = 36/248 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAGLNSLEAVKRKI GLQRELDGERERREKAEGD AALNRRIQL+E
Sbjct: 1 MAGLNSLEAVKRKIQALQQQADDAEDRAQGLQRELDGERERREKAEGDAAALNRRIQLLE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEI------------- 376
EELDRAQE+ RGMKVIENRAMKDEEKMEI
Sbjct: 61 EELDRAQEQLATALQNLEEAEKAADESERGMKVIENRAMKDEEKMEILEMQLKEAKHITD 120
Query: 377 -----------------------QERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
+ERAEVSELKCGDLEEELKNVTNNL
Sbjct: 121 EADRKYEEVARKLVILEGELKRAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSE 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
SDKLK KLEKTIDDLEEKLAQAKEENVGLHQTLDQ
Sbjct: 181 KEDKYEEEIKLLSDKLKEAETRAEFAERTVSKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 240
Query: 668 TLNELNCI 691
TLNELNCI
Sbjct: 241 TLNELNCI 248
>ref|NP_001157724.1| tropomyosin alpha-1 chain isoform 6 [Mus musculus].
Length = 248
Score = 170 bits (430), Expect = 2e-42
Identities = 113/246 (45%), Positives = 124/246 (50%), Gaps = 36/246 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG +SLEAV+RKI LQRELD ER+ RE AE DVA+LNRRIQLVE
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDQERKLRETAEADVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIE+RA KDEEKMEIQ
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE+SE KC +LEEELK VTNNL
Sbjct: 121 DADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
SDKLK KLEK+IDDLEEK+A AKEEN+ +HQ LDQ
Sbjct: 181 KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQ 240
Query: 668 TLNELN 685
TL ELN
Sbjct: 241 TLLELN 246
>ref|NP_001157725.1| tropomyosin alpha-1 chain isoform 7 [Mus musculus].
Length = 248
Score = 151 bits (382), Expect = 7e-37
Identities = 105/246 (42%), Positives = 119/246 (48%), Gaps = 36/246 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG +SLEAV+RKI LQRELD ER+ RE AE DVA+LNRRIQLVE
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDQERKLRETAEADVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIE+RA KDEEKMEIQ
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE+SE + LEE+L+ + L
Sbjct: 121 DADRKYEEVARKLVIIESDLERAEERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
SDKLK KLEK+IDDLEEK+A AKEEN+ +HQ LDQ
Sbjct: 181 KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQ 240
Query: 668 TLNELN 685
TL ELN
Sbjct: 241 TLLELN 246
>ref|NP_001157726.1| tropomyosin alpha-1 chain isoform 8 [Mus musculus].
Length = 248
Score = 147 bits (370), Expect = 2e-35
Identities = 102/248 (41%), Positives = 117/248 (47%), Gaps = 36/248 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG +SLEAV+RKI LQRELD ER+ RE AE DVA+LNRRIQLVE
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDQERKLRETAEADVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIE+RA KDEEKMEIQ
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE+SE KC +LEEELK VTNNL
Sbjct: 121 DADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
SDKLK KLEK+IDDLE++L K + + + LD
Sbjct: 181 KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDH 240
Query: 668 TLNELNCI 691
LN++ I
Sbjct: 241 ALNDMTSI 248
>ref|NP_001157728.1| tropomyosin alpha-1 chain isoform 10 [Mus musculus].
Length = 245
Score = 145 bits (366), Expect = 5e-35
Identities = 103/244 (42%), Positives = 114/244 (46%), Gaps = 36/244 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG +SLEAV+RKI LQRELD ER+ RE AE DVA+LNRRIQLVE
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDQERKLRETAEADVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIE+RA KDEEKMEIQ
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE+SE KC +LEEELK VTNNL
Sbjct: 121 DADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
SDKLK KLEK+IDDLE++L E+N L L
Sbjct: 181 KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDQLYHQLEQNRRLTNELKL 240
Query: 668 TLNE 679
LNE
Sbjct: 241 ALNE 244
>ref|NP_001157721.1| tropomyosin alpha-1 chain isoform 2 [Mus musculus].
Length = 284
Score = 141 bits (356), Expect = 7e-34
Identities = 94/207 (45%), Positives = 102/207 (49%), Gaps = 36/207 (17%)
Frame = +2
Query: 173 ERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAM 352
E KAE DVA+LNRRIQLVEEELDRAQER RGMKVIE+RA
Sbjct: 76 ETAAKAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQ 135
Query: 353 KDEEKMEIQE------------------------------------RAEVSELKCGDLEE 424
KDEEKMEIQE RAE+SE KC +LEE
Sbjct: 136 KDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEE 195
Query: 425 ELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDD 604
ELK VTNNL SDKLK KLEK+IDD
Sbjct: 196 ELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDD 255
Query: 605 LEEKLAQAKEENVGLHQTLDQTLNELN 685
LEEK+A AKEEN+ +HQ LDQTL ELN
Sbjct: 256 LEEKVAHAKEENLSMHQMLDQTLLELN 282
>ref|NP_077745.2| tropomyosin alpha-1 chain isoform 3 [Mus musculus].
Length = 284
Score = 141 bits (356), Expect = 7e-34
Identities = 94/215 (43%), Positives = 106/215 (49%), Gaps = 36/215 (16%)
Frame = +2
Query: 149 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 328
Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 329 KVIENRAMKDEEKMEIQE------------------------------------RAEVSE 400
KVIE+RA KDEEKMEIQE RAE+SE
Sbjct: 128 KVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSE 187
Query: 401 LKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 580
KC +LEEELK VTNNL SDKLK
Sbjct: 188 GKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVT 247
Query: 581 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 685
KLEK+IDDLEEK+A AKEEN+ +HQ LDQTL ELN
Sbjct: 248 KLEKSIDDLEEKVAHAKEENLSMHQMLDQTLLELN 282
>ref|NP_001157722.1| tropomyosin alpha-1 chain isoform 4 [Mus musculus].
Length = 284
Score = 123 bits (308), Expect = 3e-28
Identities = 86/215 (40%), Positives = 101/215 (46%), Gaps = 36/215 (16%)
Frame = +2
Query: 149 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 328
Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 329 KVIENRAMKDEEKMEIQ------------------------------------ERAEVSE 400
KVIE+RA KDEEKMEIQ ERAE+SE
Sbjct: 128 KVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSE 187
Query: 401 LKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 580
+ LEE+L+ + L SDKLK
Sbjct: 188 GQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVT 247
Query: 581 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 685
KLEK+IDDLEEK+A AKEEN+ +HQ LDQTL ELN
Sbjct: 248 KLEKSIDDLEEKVAHAKEENLSMHQMLDQTLLELN 282
>ref|NP_033442.2| tropomyosin beta chain [Mus musculus].
Length = 284
Score = 122 bits (307), Expect = 3e-28
Identities = 83/217 (38%), Positives = 100/217 (46%), Gaps = 36/217 (16%)
Frame = +2
Query: 149 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 328
Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 329 KVIENRAMKDEEKMEIQ------------------------------------ERAEVSE 400
KVIENRAMKDEEKME+Q ERAEV+E
Sbjct: 128 KVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSEERAEVAE 187
Query: 401 LKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 580
KCGDLEEELK VTNNL +KLK
Sbjct: 188 SKCGDLEEELKIVTNNLKSLEAQADKYSTKEDKYEEEIKLLEEKLKEAETRAEFAERSVA 247
Query: 581 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 691
KLEKTIDDLE+++ K + + + LD LN++ +
Sbjct: 248 KLEKTIDDLEDEVYAQKMKYKAISEELDNALNDITSL 284
>ref|NP_001157720.1| tropomyosin alpha-1 chain isoform 1 [Mus musculus].
Length = 284
Score = 118 bits (296), Expect = 6e-27
Identities = 83/217 (38%), Positives = 99/217 (45%), Gaps = 36/217 (16%)
Frame = +2
Query: 149 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 328
Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 329 KVIENRAMKDEEKMEIQ------------------------------------ERAEVSE 400
KVIE+RA KDEEKMEIQ ERAE+SE
Sbjct: 128 KVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSE 187
Query: 401 LKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 580
KC +LEEELK VTNNL SDKLK
Sbjct: 188 GKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVT 247
Query: 581 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 691
KLEK+IDDLE++L K + + + LD LN++ I
Sbjct: 248 KLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI 284
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 20,910,385
Number of extensions: 431950
Number of successful extensions: 1757
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 1722
Number of HSP's successfully gapped: 23
Length of query: 332
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 230
Effective length of database: 12,553,887
Effective search space: 2887394010
Effective search space used: 2887394010
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601S-097049
(997 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 418 e-114
Sscrofa_Chr01 80 3e-12
Sscrofa_Chr04 68 1e-08
gb|GL894998.2| Sus scrofa unplaced genomic scaffold ChrUScaf2882 66 4e-08
Sscrofa_Chr13 60 2e-06
>Sscrofa_Chr02
|| Length = 162569375
Score = 418 bits (211), Expect = e-114
Identities = 342/382 (89%), Gaps = 7/382 (1%)
Strand = Plus / Plus
Query: 610 agaaaaacttgcccaggccaaagaagagaacgtgggcttacatcagacactggatcagac 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61172133 agaaaaacttgcccaggccaaagaagagaacgtgggcttacatcagacactggatcagac 61172192
Query: 670 actaaacgaactaaactgtatataaccaaaacagaagagtctcgttccatcagaaactcc 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61172193 actaaacgaactaaactgtatataaccaaaacagaagagtctcgttccatcagaaactcc 61172252
Query: 730 agagctacgtgtttttctcttctcttgntagaaagttcttttnngtatgcctctttgctt 789
||||||||||||||||||||||||||| |||| ||||||| |||||||||||||
Sbjct: 61172253 agagctacgtgtttttctcttctcttgtaagaagtttcttttgttattgcctctttgctt 61172312
Query: 790 ngctggaaatgtncagcaaattatgaatacgtgaccnnaatatttgtatcagaaaagctt 849
||||||||||| |||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 61172313 tgctggaaatgtcaagcaaattatgaatacgtgaccaaatattttgtatcagaaaagctt 61172372
Query: 850 tgagca-cagtttaatctattccttccnnnnnnnncagtggca-cagctttttcagctct 907
|||||| ||||| |||||||||||||| ||||||| ||||||||||||||||
Sbjct: 61172373 tgagcaccagttaaatctattccttcctttttttcaagtggcaccagctttttcagctct 61172432
Query: 908 a-ttttatcc-tnaattgcatttatccct-aagtangcaggttatttcata-tgagcata 963
| |||||||| | |||||||||||| ||| ||||| ||||| ||||||||| ||||||||
Sbjct: 61172433 atttttatccttaaattgcatttattcctaaagtaggcagggtatttcatattgagcata 61172492
Query: 964 ctct-tctagactgagggcatt 984
|||| | ||||||||||||||
Sbjct: 61172493 ctctcttaagactgagggcatt 61172514
Score = 266 bits (134), Expect = 2e-68
Identities = 134/134 (100%)
Strand = Plus / Plus
Query: 188 gccgaaggggatgtagcagctctcaatcggcgcatccaactcgttgaggaggagttggac 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61161338 gccgaaggggatgtagcagctctcaatcggcgcatccaactcgttgaggaggagttggac 61161397
Query: 248 agggctcaggaacgactggccacagccctgcagaagcttgaggaggcagaaaaggctgca 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61161398 agggctcaggaacgactggccacagccctgcagaagcttgaggaggcagaaaaggctgca 61161457
Query: 308 gatgagagcgagag 321
||||||||||||||
Sbjct: 61161458 gatgagagcgagag 61161471
Score = 264 bits (133), Expect = 8e-68
Identities = 133/133 (100%)
Strand = Plus / Plus
Query: 56 atggctggcctcaactccctggaggcggtgaaacgcaagatccaggccctgcagcagcag 115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61156657 atggctggcctcaactccctggaggcggtgaaacgcaagatccaggccctgcagcagcag 61156716
Query: 116 gcggacgaggcagaggatcgcgcgcagggcctgcagcgggagctggacggcgagcgcgag 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61156717 gcggacgaggcagaggatcgcgcgcagggcctgcagcgggagctggacggcgagcgcgag 61156776
Query: 176 cggcgggagaaag 188
|||||||||||||
Sbjct: 61156777 cggcgggagaaag 61156789
Score = 151 bits (76), Expect = 9e-34
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 403 aaaatgtggtgacctggaagaagaactcaagaatgtcaccaacaacctgaagtcgctaga 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61165635 aaaatgtggtgacctggaagaagaactcaagaatgtcaccaacaacctgaagtcgctaga 61165694
Query: 463 ggctgcatctgaaaag 478
||||||||||||||||
Sbjct: 61165695 ggctgcatctgaaaag 61165710
Score = 143 bits (72), Expect = 2e-31
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 540 aggctgagacccgtgctgaatttgcagagagaacagttgcaaaactggaaaagaccatcg 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61167561 aggctgagacccgtgctgaatttgcagagagaacagttgcaaaactggaaaagaccatcg 61167620
Query: 600 atgacctggaag 611
||||||||||||
Sbjct: 61167621 atgacctggaag 61167632
Score = 131 bits (66), Expect = 8e-28
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 477 agtattctgaaaaggaggataaatatgaagaagagattaaacttctgtctgacaaactga 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61167413 agtattctgaaaaggaggataaatatgaagaagagattaaacttctgtctgacaaactga 61167472
Query: 537 aagagg 542
||||||
Sbjct: 61167473 aagagg 61167478
Score = 125 bits (63), Expect = 5e-26
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 320 agaggaatgaaggtgatagaaaaccgggccatgaaagatgaggagaagatggagattcag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61163820 agaggaatgaaggtgatagaaaaccgggccatgaaagatgaggagaagatggagattcag 61163879
Query: 380 gag 382
|||
Sbjct: 61163880 gag 61163882
>Sscrofa_Chr01
|| Length = 315321322
Score = 79.8 bits (40), Expect = 3e-12
Identities = 88/104 (84%)
Strand = Plus / Minus
Query: 218 cgcatccaactcgttgaggaggagttggacagggctcaggaacgactggccacagccctg 277
||||||||||| |||||||| ||| ||||| | || ||||| |||||||| ||||| |
Sbjct: 120225997 cgcatccaactggttgaggaagagctggaccgtgcccaggagcgactggcaacagcttta 120225938
Query: 278 cagaagcttgaggaggcagaaaaggctgcagatgagagcgagag 321
||||| ||||||||||| || ||||| ||||||||||| |||||
Sbjct: 120225937 cagaaacttgaggaggctgagaaggcagcagatgagagtgagag 120225894
Score = 77.8 bits (39), Expect = 1e-11
Identities = 72/83 (86%)
Strand = Plus / Minus
Query: 233 gaggaggagttggacagggctcaggaacgactggccacagccctgcagaagcttgaggag 292
||||||||| ||||| |||| ||||| || ||||||||||||||||| ||||| ||||||
Sbjct: 264130944 gaggaggagctggaccgggcgcaggagcgtctggccacagccctgcaaaagctggaggag 264130885
Query: 293 gcagaaaaggctgcagatgagag 315
|| || ||||| || ||||||||
Sbjct: 264130884 gccgagaaggcagctgatgagag 264130862
Score = 69.9 bits (35), Expect = 3e-09
Identities = 56/63 (88%)
Strand = Plus / Minus
Query: 320 agaggaatgaaggtgatagaaaaccgggccatgaaagatgaggagaagatggagattcag 379
|||||||||||||| || |||||||| |||||||| |||||||| ||||||||| | |||
Sbjct: 264130765 agaggaatgaaggtcattgaaaaccgagccatgaaggatgaggaaaagatggagctgcag 264130706
Query: 380 gag 382
|||
Sbjct: 264130705 gag 264130703
>Sscrofa_Chr04
|| Length = 143465943
Score = 67.9 bits (34), Expect = 1e-08
Identities = 79/94 (84%)
Strand = Plus / Minus
Query: 525 ctgacaaactgaaagaggctgagacccgtgctgaatttgcagagagaacagttgcaaaac 584
|||| ||||| |||||||| ||||||||||||| |||||| |||||| || || || |
Sbjct: 63051653 ctgataaactcaaagaggcagagacccgtgctgcatttgctgagagatgggtagccaagc 63051594
Query: 585 tggaaaagaccatcgatgacctggaagaaaaact 618
|||||||||| || ||||| |||||||||||||
Sbjct: 63051593 tggaaaagacaattgatgatttggaagaaaaact 63051560
Score = 65.9 bits (33), Expect = 4e-08
Identities = 84/101 (83%)
Strand = Plus / Plus
Query: 221 atccaactcgttgaggaggagttggacagggctcaggaacgactggccacagccctgcag 280
||||| || ||||| |||||| ||||| | ||||| || || |||||||| ||||||||
Sbjct: 104473286 atccagctggttgaagaggagctggaccgcgctcaagagcgcctggccactgccctgcaa 104473345
Query: 281 aagcttgaggaggcagaaaaggctgcagatgagagcgagag 321
||||| ||||| || || || ||||| ||||||||||||||
Sbjct: 104473346 aagctggaggaagctgagaaagctgctgatgagagcgagag 104473386
Score = 63.9 bits (32), Expect = 2e-07
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 77 gaggcggtgaaacgcaagatccaggccctgcagcagcaggcggacgaggcagagga 132
||||||||||| ||||||||||||| |||||||||||||| || || ||||||||
Sbjct: 104467102 gaggcggtgaagcgcaagatccaggttctgcagcagcaggccgatgatgcagagga 104467157
>gb|GL894998.2| Sus scrofa unplaced genomic scaffold ChrUScaf2882
Length = 79217
Score = 65.9 bits (33), Expect = 4e-08
Identities = 84/101 (83%)
Strand = Plus / Minus
Query: 221 atccaactcgttgaggaggagttggacagggctcaggaacgactggccacagccctgcag 280
||||| || ||||| |||||| ||||| | ||||| || || |||||||| ||||||||
Sbjct: 2061 atccagctggttgaagaggagctggaccgcgctcaagagcgcctggccactgccctgcaa 2002
Query: 281 aagcttgaggaggcagaaaaggctgcagatgagagcgagag 321
||||| ||||| || || || ||||| ||||||||||||||
Sbjct: 2001 aagctggaggaagctgagaaagctgctgatgagagcgagag 1961
>Sscrofa_Chr13
|| Length = 218635234
Score = 60.0 bits (30), Expect = 2e-06
Identities = 90/110 (81%)
Strand = Plus / Plus
Query: 263 ctggccacagccctgcagaagcttgaggaggcagaaaaggctgcagatgagagcgagaga 322
|||||||| || ||||| ||||| || || ||||| || ||||| || ||||| ||||||
Sbjct: 43190661 ctggccactgctctgcaaaagctggaagaagcagagaaagctgctgacgagagtgagaga 43190720
Query: 323 ggaatgaaggtgatagaaaaccgggccatgaaagatgaggagaagatgga 372
|| |||||||| || |||||| | ||| | ||||||||||| || |||||
Sbjct: 43190721 ggtatgaaggttattgaaaactgagccttaaaagatgaggaaaaaatgga 43190770
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,890,428
Number of extensions: 202
Number of successful extensions: 202
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 16
Length of query: 997
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 976
Effective length of database: 2,808,413,156
Effective search space: 2741011240256
Effective search space used: 2741011240256
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)