Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AMP01_0020_E09
(2700 letters)
Database: RefSeqBP
33,508 sequences; 16,112,626 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001033154.1| glycoprotein (transmembrane) nmb [Bos taurus] 875 0.0
Alignment gi|XP_582778.2| PREDICTED: similar to Melanocyte protein Pmel 1... 164 3e-40
>ref|NP_001033154.1| glycoprotein (transmembrane) nmb [Bos taurus]
Length = 555
Score = 875 bits (2262), Expect = 0.0
Identities = 423/545 (77%), Positives = 464/545 (85%)
Frame = +1
Query: 88 MECLYCFXXXXXXXXXXXXXXXKRFQDVLSNERPSSYMREHNQLNGWSSDENDWNEKLYP 267
MECLYCF KRF DVLSNERPS YMREHNQL+GWSSDENDWNEKLYP
Sbjct: 1 MECLYCFLGFLLLAAGLPLDAAKRFHDVLSNERPSGYMREHNQLSGWSSDENDWNEKLYP 60
Query: 268 VWKRGDSRWKNSWKGGRVRAVLTSDSPALVGSTITFAVNLVFPRCQKEDADGNIVYEKNC 447
VWKRGDSRWK+SWKGGRV+AVLTSDSPALVGSTITFAVNLVFPRCQKEDA GNIVYEKNC
Sbjct: 61 VWKRGDSRWKSSWKGGRVQAVLTSDSPALVGSTITFAVNLVFPRCQKEDASGNIVYEKNC 120
Query: 448 RNDSGPSPDPYVYNWTAWTEDNDWRDGTSQGHHNVFPDGKPFPHPWKRNFVYVFHTLGQY 627
RND+G SPD YVYNWTA TED+DW + TS+GHHNVFPDGKPFP PWK+NFVYVFHTLGQY
Sbjct: 121 RNDTGASPDLYVYNWTAGTEDSDWGNDTSEGHHNVFPDGKPFPRPWKKNFVYVFHTLGQY 180
Query: 628 FQKLGRCSVSVSINTANVTLGPQVMEVTVYRRHGRTYVPIAKVKDVYVVTDQIPIFVTMS 807
FQKLG+CSV++SINTANV+LGPQ+MEVTVYRRH R YVPIAKVKDVYVVTDQIP+FVTMS
Sbjct: 181 FQKLGQCSVTISINTANVSLGPQIMEVTVYRRHRRAYVPIAKVKDVYVVTDQIPVFVTMS 240
Query: 808 QKNNRNSSDEIFLKDLPIIFNVLIHDPSHFLNESAIYYKWNFGDNTGLFVSNNPIMNHTY 987
QKNNRNSSDE FL+DLPI F+VLIHDPSHFLNESAIYYKWNFGDNTGLFVSNN +NHTY
Sbjct: 241 QKNNRNSSDETFLRDLPITFSVLIHDPSHFLNESAIYYKWNFGDNTGLFVSNNHTLNHTY 300
Query: 988 VLNGTFSFNLTVQATVPGLCXXXXXXXXXXXXXLFLAGGKPLELREIPVENCKINRYGYF 1167
VLNGTFS NLTVQA VPG C L AG LELREIP E+C I RYGYF
Sbjct: 301 VLNGTFSLNLTVQAEVPGPCPLPSPRPPKTTPPLVTAGDSTLELREIPDESCHITRYGYF 360
Query: 1168 MATITIVAGILQVNILQVTDVLTPGPQPDDSLVDFVLTCQGSIPTEICTIISDPTCQVTQ 1347
ATITIV GIL+VNI+QVTDV P PQPD+SLVDFV+TC GSIPTE+CTIISDP+CQ+TQ
Sbjct: 361 KATITIVEGILEVNIIQVTDVPMPRPQPDNSLVDFVVTCHGSIPTEVCTIISDPSCQITQ 420
Query: 1348 DTVCNTVDEDLGDTCLLTVRRAFSSPGTHCMNLTLGDDASLALTSTLVSIPGRDPAFLLR 1527
+ VC+ V +LGDTCLLTVRRAFS GT+CMNLTLG+DASLALTSTLVSI RDPA LLR
Sbjct: 421 NPVCDPVAMELGDTCLLTVRRAFSGSGTYCMNLTLGNDASLALTSTLVSINSRDPASLLR 480
Query: 1528 MTNGILVFVGFLTIFVTVIAILVSKKYRKYKAIESNTGIVVKDKGLNVFLSRAKTMFFPG 1707
NGILV +G L I VTVIA L+ KK+++YK IE++ GIV++ KGLNVFL+ AKT+FFPG
Sbjct: 481 TANGILVSLGCLAILVTVIAFLMYKKHKEYKPIENSPGIVIRGKGLNVFLNHAKTLFFPG 540
Query: 1708 NQEKD 1722
NQEKD
Sbjct: 541 NQEKD 545
>ref|XP_582778.2| PREDICTED: similar to Melanocyte protein Pmel 17 precursor
(Melanocyte lineage-specific antigen GP100)
(Melanoma-associated ME20 antigen) (ME20M/ME20S)
(ME20-M/ME20-S) (95 kDa melanocyte-specific secreted
glycoprotein) [Bos taurus]
Length = 649
Score = 164 bits (415), Expect = 3e-40
Identities = 92/268 (34%), Positives = 144/268 (53%), Gaps = 4/268 (1%)
Frame = +1
Query: 247 WNEKLYPVWKRGDSRWKNSWKGGRVRAVLTSDSPALVGSTITFAVNLVFPRCQKEDADGN 426
WN +LYP W +S+ + W+GG + +++D P L+G+ +F++ L FP+ QK DG
Sbjct: 44 WNRQLYPEWT--ESQGPDCWRGGHISLKVSNDGPTLIGANASFSIALHFPKSQKVLPDGQ 101
Query: 427 IVYEKNCRNDSGPSPDPYVYNWTAWTEDNDWRDGTSQGHHNVFPDGKPFPH---PWKRNF 597
+++ N + W D T +FPDG+P P KR F
Sbjct: 102 VIWANNTIINGSQV-------WGGQLVYPQEPDDTC-----IFPDGEPCPSGPLSQKRCF 149
Query: 598 VYVFHTLGQYFQKLGRCSVSVSINTANVTLGPQVMEVTVYRRHG-RTYVPIAKVKDVYVV 774
VYV+ T QY+Q LG +SI T LG MEVTVY R G ++YVP+A + +
Sbjct: 150 VYVWKTWDQYWQVLGGPVSGLSIGTDKAMLGTYNMEVTVYHRRGSQSYVPLAHSSSAFTI 209
Query: 775 TDQIPIFVTMSQKNNRNSSDEIFLKDLPIIFNVLIHDPSHFLNESAIYYKWNFGDNTGLF 954
TDQ+P V++SQ + ++ FL+ P+ F + +HDPS +L + + Y W+FGD+TG
Sbjct: 210 TDQVPFSVSVSQLQALDGRNKRFLRKQPLTFALQLHDPSGYLAGADLSYTWDFGDSTGTL 269
Query: 955 VSNNPIMNHTYVLNGTFSFNLTVQATVP 1038
+S + HTY+ +G + + +QA +P
Sbjct: 270 ISRALTVTHTYLESGPVTAQVVLQAAIP 297
Score = 81.3 bits (199), Expect = 4e-15
Identities = 55/169 (32%), Positives = 83/169 (49%), Gaps = 1/169 (0%)
Frame = +1
Query: 1111 LELREIPVENCKINRYGYFMATITIVAGILQVNILQVTDVLTPGPQPDDSLVDFVLTCQG 1290
LE R+ P++ C + RYG F T+ IV GI ILQ + + ++CQG
Sbjct: 452 LEKRQAPLD-CVLYRYGSFSLTLDIVQGIESAEILQAVS------SSEGDAFELTVSCQG 504
Query: 1291 SIPTEICTIISDPTCQVTQDTVCNTVDEDLGDTCLLTVRRAF-SSPGTHCMNLTLGDDAS 1467
+P E C IS P CQ+ +C V C L + + GT+C+N++L D S
Sbjct: 505 GLPKEACMDISSPGCQLPAQRLCQPVPP--SPACQLVLHQVLKGGSGTYCLNVSLADANS 562
Query: 1468 LALTSTLVSIPGRDPAFLLRMTNGILVFVGFLTIFVTVIAILVSKKYRK 1614
LA+ ST + +PG++ LR +FVG L + + +L S YR+
Sbjct: 563 LAMVSTQLVMPGQEAG--LRQAP---LFVGILLVLTAL--LLASLIYRR 604
Database: RefSeqBP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 16,112,626
Number of sequences in database: 33,508
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,214,716
Number of Sequences: 33508
Number of extensions: 2528070
Number of successful extensions: 6256
Number of sequences better than 1.0e-05: 2
Number of HSP's better than 0.0 without gapping: 5294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6239
length of database: 16,112,626
effective HSP length: 110
effective length of database: 12,426,746
effective search space used: 9804702594
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AMP01_0020_E09
(2700 letters)
Database: RefSeqCP
33,732 sequences; 19,266,565 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_539472.2| PREDICTED: similar to glycoprotein (transmembra... 803 0.0
Alignment gi|XP_863198.1| PREDICTED: similar to glycoprotein (transmembra... 796 0.0
Alignment gi|XP_538223.2| PREDICTED: similar to Melanocyte protein Pmel 1... 171 4e-42
Alignment gi|XP_848297.1| PREDICTED: similar to Melanocyte protein Pmel 1... 171 4e-42
>ref|XP_539472.2| PREDICTED: similar to glycoprotein (transmembrane) nmb isoform b
precursor isoform 2 [Canis familiaris]
Length = 554
Score = 803 bits (2074), Expect = 0.0
Identities = 395/548 (72%), Positives = 441/548 (80%), Gaps = 3/548 (0%)
Frame = +1
Query: 88 MECLYCFXXXXXXXXXXXXXXXKRFQDVLSNERPSSYMREHNQLNGWSSDENDWNEKLYP 267
MECLYCF +F DVLSNER S Y+REHNQL GWSSDENDWNE+LYP
Sbjct: 1 MECLYCFLGCLLLAARLPLDAAIKFHDVLSNERISGYLREHNQLTGWSSDENDWNEELYP 60
Query: 268 VWKRGDSRWKNSWKGGRVRAVLTSDSPALVGSTITFAVNLVFPRCQKEDADGNIVYEKNC 447
VWK+GDSRWKNSWKGG VRA+LTSDSPALVGSTITF V+LVFPRCQ+ED GNIVYEKNC
Sbjct: 61 VWKKGDSRWKNSWKGGHVRAILTSDSPALVGSTITFVVDLVFPRCQREDVSGNIVYEKNC 120
Query: 448 RNDSGPSPDPYVYNWTAWTEDNDWRDGTSQGHHNVFPDGKPFPHP--WKR-NFVYVFHTL 618
ND+GPSPD YVYNWT E+ W +GT++ HH+VFPDGKPFPH WKR NFVYVF TL
Sbjct: 121 GNDTGPSPDLYVYNWT---EEGSWGNGTNEHHHDVFPDGKPFPHHPGWKRCNFVYVFRTL 177
Query: 619 GQYFQKLGRCSVSVSINTANVTLGPQVMEVTVYRRHGRTYVPIAKVKDVYVVTDQIPIFV 798
GQY QKLGR S VS+NTANVTLGP +MEV VYRRH YVPIAKVKDVYVVTD IP+FV
Sbjct: 178 GQYLQKLGRGSARVSVNTANVTLGPHLMEVIVYRRHRHAYVPIAKVKDVYVVTDHIPVFV 237
Query: 799 TMSQKNNRNSSDEIFLKDLPIIFNVLIHDPSHFLNESAIYYKWNFGDNTGLFVSNNPIMN 978
TM QKN+RN SDE FL+DLPI+FNVLIHDPSHFLNESAIYYKWNFGDNTGLFVSN P +N
Sbjct: 238 TMYQKNDRNLSDETFLRDLPIMFNVLIHDPSHFLNESAIYYKWNFGDNTGLFVSNAPTLN 297
Query: 979 HTYVLNGTFSFNLTVQATVPGLCXXXXXXXXXXXXXLFLAGGKPLELREIPVENCKINRY 1158
HTYVLNGTFS NLTVQA+VPG C L AG PLELR+ C INRY
Sbjct: 298 HTYVLNGTFSLNLTVQASVPGPCPSPSPTPPKPTS-LSSAGDNPLELRKTSGITCLINRY 356
Query: 1159 GYFMATITIVAGILQVNILQVTDVLTPGPQPDDSLVDFVLTCQGSIPTEICTIISDPTCQ 1338
GYF ATITIV GIL+VNI+Q+TDVL P PQPD+SL+DFV+TCQG +PTE+CT++SDPTCQ
Sbjct: 357 GYFKATITIVEGILEVNIIQMTDVLMPVPQPDNSLMDFVVTCQGMMPTEVCTVVSDPTCQ 416
Query: 1339 VTQDTVCNTVDEDLGDTCLLTVRRAFSSPGTHCMNLTLGDDASLALTSTLVSIPGRDPAF 1518
+T DTVC+ V ED+G CLLTVRRAFS GT+CMNLTLGD+ SLALTSTLVSIP RDPA
Sbjct: 417 ITYDTVCDPVGEDMGHECLLTVRRAFSGSGTYCMNLTLGDNTSLALTSTLVSIPARDPAS 476
Query: 1519 LLRMTNGILVFVGFLTIFVTVIAILVSKKYRKYKAIESNTGIVVKDKGLNVFLSRAKTMF 1698
RM NG+LV VG L IFVTVI + V KK+++Y IE++TGIVVK KGLNVFL+RAK MF
Sbjct: 477 PSRMANGVLVAVGCLAIFVTVITLWVYKKHKEYNLIENSTGIVVKGKGLNVFLNRAKAMF 536
Query: 1699 FPGNQEKD 1722
+PG QEKD
Sbjct: 537 YPGIQEKD 544
>ref|XP_863198.1| PREDICTED: similar to glycoprotein (transmembrane) nmb isoform a
precursor isoform 3 [Canis familiaris]
Length = 581
Score = 796 bits (2055), Expect = 0.0
Identities = 395/574 (68%), Positives = 441/574 (76%), Gaps = 29/574 (5%)
Frame = +1
Query: 88 MECLYCFXXXXXXXXXXXXXXXKRFQDVLSNERPSSYMREHNQLNGWSSDENDWNEKLYP 267
MECLYCF +F DVLSNER S Y+REHNQL GWSSDENDWNE+LYP
Sbjct: 1 MECLYCFLGCLLLAARLPLDAAIKFHDVLSNERISGYLREHNQLTGWSSDENDWNEELYP 60
Query: 268 VWKRGDSRWKNSWKGGRVRAVLTSDSPALVGSTITFAVNLVFPRCQKEDADGNIVYEKNC 447
VWK+GDSRWKNSWKGG VRA+LTSDSPALVGSTITF V+LVFPRCQ+ED GNIVYEKNC
Sbjct: 61 VWKKGDSRWKNSWKGGHVRAILTSDSPALVGSTITFVVDLVFPRCQREDVSGNIVYEKNC 120
Query: 448 RNDSGPSPDPYVYNWTAWTEDNDWRDGTSQGHHNVFPDGKPFPHP--WKR-NFVYVFHTL 618
ND+GPSPD YVYNWT E+ W +GT++ HH+VFPDGKPFPH WKR NFVYVF TL
Sbjct: 121 GNDTGPSPDLYVYNWT---EEGSWGNGTNEHHHDVFPDGKPFPHHPGWKRCNFVYVFRTL 177
Query: 619 GQYFQKLGRCSVSVSINTANVTLGPQVMEVTVYRRHGRTYVPIAKVKDVYVVTDQIPIFV 798
GQY QKLGR S VS+NTANVTLGP +MEV VYRRH YVPIAKVKDVYVVTD IP+FV
Sbjct: 178 GQYLQKLGRGSARVSVNTANVTLGPHLMEVIVYRRHRHAYVPIAKVKDVYVVTDHIPVFV 237
Query: 799 TMSQKNNRNSSDEIFLKDLPIIFNVLIHDPSHFLNESAIYYKWNFGDNTGLFVSNNPIMN 978
TM QKN+RN SDE FL+DLPI+FNVLIHDPSHFLNESAIYYKWNFGDNTGLFVSN P +N
Sbjct: 238 TMYQKNDRNLSDETFLRDLPIMFNVLIHDPSHFLNESAIYYKWNFGDNTGLFVSNAPTLN 297
Query: 979 HTYVLNGTFSFNLTVQATVPGLC--------------------------XXXXXXXXXXX 1080
HTYVLNGTFS NLTVQA+VPG C
Sbjct: 298 HTYVLNGTFSLNLTVQASVPGPCPSPSPTPPKPTSLCKPSPLSFFPLPHFSPSSFSSLPT 357
Query: 1081 XXLFLAGGKPLELREIPVENCKINRYGYFMATITIVAGILQVNILQVTDVLTPGPQPDDS 1260
L AG PLELR+ C INRYGYF ATITIV GIL+VNI+Q+TDVL P PQPD+S
Sbjct: 358 STLSSAGDNPLELRKTSGITCLINRYGYFKATITIVEGILEVNIIQMTDVLMPVPQPDNS 417
Query: 1261 LVDFVLTCQGSIPTEICTIISDPTCQVTQDTVCNTVDEDLGDTCLLTVRRAFSSPGTHCM 1440
L+DFV+TCQG +PTE+CT++SDPTCQ+T DTVC+ V ED+G CLLTVRRAFS GT+CM
Sbjct: 418 LMDFVVTCQGMMPTEVCTVVSDPTCQITYDTVCDPVGEDMGHECLLTVRRAFSGSGTYCM 477
Query: 1441 NLTLGDDASLALTSTLVSIPGRDPAFLLRMTNGILVFVGFLTIFVTVIAILVSKKYRKYK 1620
NLTLGD+ SLALTSTLVSIP RDPA RM NG+LV VG L IFVTVI + V KK+++Y
Sbjct: 478 NLTLGDNTSLALTSTLVSIPARDPASPSRMANGVLVAVGCLAIFVTVITLWVYKKHKEYN 537
Query: 1621 AIESNTGIVVKDKGLNVFLSRAKTMFFPGNQEKD 1722
IE++TGIVVK KGLNVFL+RAK MF+PG QEKD
Sbjct: 538 LIENSTGIVVKGKGLNVFLNRAKAMFYPGIQEKD 571
>ref|XP_538223.2| PREDICTED: similar to Melanocyte protein Pmel 17 precursor
(Melanocyte lineage-specific antigen GP100)
(Melanoma-associated ME20 antigen) (ME20M/ME20S)
(ME20-M/ME20-S) (95 kDa melanocyte-specific secreted
glycoprotein) isoform 1 [Canis familiaris]
Length = 631
Score = 171 bits (432), Expect = 4e-42
Identities = 96/273 (35%), Positives = 150/273 (54%), Gaps = 9/273 (3%)
Frame = +1
Query: 247 WNEKLYPVWKRGDSRWKNSWKGGRVRAVLTSDSPALVGSTITFAVNLVFPRCQKEDADGN 426
WN +LYP W +++ + W+GG+V +++D P LVG+ +F++ L FP QK DG
Sbjct: 30 WNRQLYPEWT--ETQRPDCWRGGQVSLKVSNDGPTLVGANASFSIALHFPESQKVLPDGQ 87
Query: 427 IVYEKNCRND-----SGPSPDPYVYNWTAWTEDNDWRDGTSQGHHNVFPDGKPFPH-PWK 588
+V+ N D G P V + +FPDG+ P PW
Sbjct: 88 VVWANNTIIDGSQVWGGQPVYPQVLDDAC-----------------IFPDGRACPSGPWS 130
Query: 589 --RNFVYVFHTLGQYFQKLGRCSVSVSINTANVTLGPQVMEVTVY-RRHGRTYVPIAKVK 759
R+FVYV+ T GQY+Q LG +SI T LG MEVTVY RR ++YVP+A
Sbjct: 131 QTRSFVYVWKTWGQYWQVLGGPVSGLSIVTGKAVLGTHTMEVTVYHRRESQSYVPLAHSC 190
Query: 760 DVYVVTDQIPIFVTMSQKNNRNSSDEIFLKDLPIIFNVLIHDPSHFLNESAIYYKWNFGD 939
+ +TDQ+P V++SQ + ++ FL++ P+ F + +HDPS +L+ + + Y W+FGD
Sbjct: 191 SAFTITDQVPFSVSVSQLQALDGGNKHFLRNHPLTFALRLHDPSGYLSGADLSYTWDFGD 250
Query: 940 NTGLFVSNNPIMNHTYVLNGTFSFNLTVQATVP 1038
+TG +S ++ HTY+ +G + + +QA +P
Sbjct: 251 HTGTLISRALVVTHTYLESGPITAQVVLQAAIP 283
Score = 82.0 bits (201), Expect = 3e-15
Identities = 54/169 (31%), Positives = 82/169 (48%), Gaps = 1/169 (0%)
Frame = +1
Query: 1111 LELREIPVENCKINRYGYFMATITIVAGILQVNILQVTDVLTPGPQPDDSLVDFVLTCQG 1290
L RE P++ C + RYG F T+ IV GI ILQ P + + ++CQG
Sbjct: 433 LAKRETPLD-CVLYRYGSFSLTLDIVRGIENAEILQAV------PSSEGDAFELTVSCQG 485
Query: 1291 SIPTEICTIISDPTCQVTQDTVCNTVDEDLGDTCLLTVRRAF-SSPGTHCMNLTLGDDAS 1467
+P E C IS P CQ +C V C L + + GT+C+N++L D S
Sbjct: 486 GLPKEACMDISSPGCQPPAQRLCQPVPP--SPACQLVLHQVLKGGSGTYCLNVSLADANS 543
Query: 1468 LALTSTLVSIPGRDPAFLLRMTNGILVFVGFLTIFVTVIAILVSKKYRK 1614
LA+ ST + +PG++ +F+G L + + + +LVS YR+
Sbjct: 544 LAMVSTQLVMPGQEAG-----VGQAPLFMGILLVLLAM--VLVSLIYRR 585
>ref|XP_848297.1| PREDICTED: similar to Melanocyte protein Pmel 17 precursor
(Melanocyte lineage-specific antigen GP100)
(Melanoma-associated ME20 antigen) (ME20M/ME20S)
(ME20-M/ME20-S) (95 kDa melanocyte-specific secreted
glycoprotein) isoform 2 [Canis familiaris]
Length = 644
Score = 171 bits (432), Expect = 4e-42
Identities = 96/273 (35%), Positives = 150/273 (54%), Gaps = 9/273 (3%)
Frame = +1
Query: 247 WNEKLYPVWKRGDSRWKNSWKGGRVRAVLTSDSPALVGSTITFAVNLVFPRCQKEDADGN 426
WN +LYP W +++ + W+GG+V +++D P LVG+ +F++ L FP QK DG
Sbjct: 30 WNRQLYPEWT--ETQRPDCWRGGQVSLKVSNDGPTLVGANASFSIALHFPESQKVLPDGQ 87
Query: 427 IVYEKNCRND-----SGPSPDPYVYNWTAWTEDNDWRDGTSQGHHNVFPDGKPFPH-PWK 588
+V+ N D G P V + +FPDG+ P PW
Sbjct: 88 VVWANNTIIDGSQVWGGQPVYPQVLDDAC-----------------IFPDGRACPSGPWS 130
Query: 589 --RNFVYVFHTLGQYFQKLGRCSVSVSINTANVTLGPQVMEVTVY-RRHGRTYVPIAKVK 759
R+FVYV+ T GQY+Q LG +SI T LG MEVTVY RR ++YVP+A
Sbjct: 131 QTRSFVYVWKTWGQYWQVLGGPVSGLSIVTGKAVLGTHTMEVTVYHRRESQSYVPLAHSC 190
Query: 760 DVYVVTDQIPIFVTMSQKNNRNSSDEIFLKDLPIIFNVLIHDPSHFLNESAIYYKWNFGD 939
+ +TDQ+P V++SQ + ++ FL++ P+ F + +HDPS +L+ + + Y W+FGD
Sbjct: 191 SAFTITDQVPFSVSVSQLQALDGGNKHFLRNHPLTFALRLHDPSGYLSGADLSYTWDFGD 250
Query: 940 NTGLFVSNNPIMNHTYVLNGTFSFNLTVQATVP 1038
+TG +S ++ HTY+ +G + + +QA +P
Sbjct: 251 HTGTLISRALVVTHTYLESGPITAQVVLQAAIP 283
Score = 82.0 bits (201), Expect = 3e-15
Identities = 54/169 (31%), Positives = 82/169 (48%), Gaps = 1/169 (0%)
Frame = +1
Query: 1111 LELREIPVENCKINRYGYFMATITIVAGILQVNILQVTDVLTPGPQPDDSLVDFVLTCQG 1290
L RE P++ C + RYG F T+ IV GI ILQ P + + ++CQG
Sbjct: 446 LAKRETPLD-CVLYRYGSFSLTLDIVRGIENAEILQAV------PSSEGDAFELTVSCQG 498
Query: 1291 SIPTEICTIISDPTCQVTQDTVCNTVDEDLGDTCLLTVRRAF-SSPGTHCMNLTLGDDAS 1467
+P E C IS P CQ +C V C L + + GT+C+N++L D S
Sbjct: 499 GLPKEACMDISSPGCQPPAQRLCQPVPP--SPACQLVLHQVLKGGSGTYCLNVSLADANS 556
Query: 1468 LALTSTLVSIPGRDPAFLLRMTNGILVFVGFLTIFVTVIAILVSKKYRK 1614
LA+ ST + +PG++ +F+G L + + + +LVS YR+
Sbjct: 557 LAMVSTQLVMPGQEAG-----VGQAPLFMGILLVLLAM--VLVSLIYRR 598
Database: RefSeqCP
Posted date: Aug 1, 2006 9:25 PM
Number of letters in database: 19,266,565
Number of sequences in database: 33,732
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,532,636
Number of Sequences: 33732
Number of extensions: 2955214
Number of successful extensions: 6946
Number of sequences better than 1.0e-05: 4
Number of HSP's better than 0.0 without gapping: 5882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6925
length of database: 19,266,565
effective HSP length: 112
effective length of database: 15,488,581
effective search space used: 12189513247
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AMP01_0020_E09
(2700 letters)
Database: RefSeqHP
39,411 sequences; 17,774,539 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002501.1| glycoprotein (transmembrane) nmb isoform b prec... 823 0.0
Alignment gi|NP_001005340.1| glycoprotein (transmembrane) nmb isoform a p... 820 0.0
Alignment gi|NP_008859.1| silver homolog [Homo sapiens] 172 1e-42
>ref|NP_002501.1| glycoprotein (transmembrane) nmb isoform b precursor [Homo sapiens]
Length = 560
Score = 823 bits (2125), Expect = 0.0
Identities = 401/550 (72%), Positives = 453/550 (82%), Gaps = 5/550 (0%)
Frame = +1
Query: 88 MECLYCFXXXXXXXXXXXXXXXKRFQDVLSNERPSSYMREHNQLNGWSSDENDWNEKLYP 267
MECLY F KRF DVL NERPS+YMREHNQLNGWSSDENDWNEKLYP
Sbjct: 1 MECLYYFLGFLLLAARLPLDAAKRFHDVLGNERPSAYMREHNQLNGWSSDENDWNEKLYP 60
Query: 268 VWKRGDSRWKNSWKGGRVRAVLTSDSPALVGSTITFAVNLVFPRCQKEDADGNIVYEKNC 447
VWKRGD RWKNSWKGGRV+AVLTSDSPALVGS ITFAVNL+FPRCQKEDA+GNIVYEKNC
Sbjct: 61 VWKRGDMRWKNSWKGGRVQAVLTSDSPALVGSNITFAVNLIFPRCQKEDANGNIVYEKNC 120
Query: 448 RNDSGPSPDPYVYNWTAWTEDNDWRDGTSQGHHNVFPDGKPFPH--PWKR-NFVYVFHTL 618
RN++G S DPYVYNWTAW+ED+D +GT Q HHNVFPDGKPFPH W+R NF+YVFHTL
Sbjct: 121 RNEAGLSADPYVYNWTAWSEDSDGENGTGQSHHNVFPDGKPFPHHPGWRRWNFIYVFHTL 180
Query: 619 GQYFQKLGRCSVSVSINTANVTLGPQVMEVTVYRRHGRTYVPIAKVKDVYVVTDQIPIFV 798
GQYFQKLGRCSV VS+NTANVTLGPQ+MEVTVYRRHGR YVPIA+VKDVYVVTDQIP+FV
Sbjct: 181 GQYFQKLGRCSVRVSVNTANVTLGPQLMEVTVYRRHGRAYVPIAQVKDVYVVTDQIPVFV 240
Query: 799 TMSQKNNRNSSDEIFLKDLPIIFNVLIHDPSHFLNESAIYYKWNFGDNTGLFVSNNPIMN 978
TM QKN+RNSSDE FLKDLPI+F+VLIHDPSHFLN S I YKW+FGDNTGLFVS N +N
Sbjct: 241 TMFQKNDRNSSDETFLKDLPIMFDVLIHDPSHFLNYSTINYKWSFGDNTGLFVSTNHTVN 300
Query: 979 HTYVLNGTFSFNLTVQATVPGLC--XXXXXXXXXXXXXLFLAGGKPLELREIPVENCKIN 1152
HTYVLNGTFS NLTV+A PG C L AG PLEL IP ENC+IN
Sbjct: 301 HTYVLNGTFSLNLTVKAAAPGPCPPPPPPPRPSKPTPSLGPAGDNPLELSRIPDENCQIN 360
Query: 1153 RYGYFMATITIVAGILQVNILQVTDVLTPGPQPDDSLVDFVLTCQGSIPTEICTIISDPT 1332
RYG+F ATITIV GIL+VNI+Q+TDVL P P P+ SL+DFV+TCQGSIPTE+CTIISDPT
Sbjct: 361 RYGHFQATITIVEGILEVNIIQMTDVLMPVPWPESSLIDFVVTCQGSIPTEVCTIISDPT 420
Query: 1333 CQVTQDTVCNTVDEDLGDTCLLTVRRAFSSPGTHCMNLTLGDDASLALTSTLVSIPGRDP 1512
C++TQ+TVC+ VD D + CLLTVRR F+ GT+C+NLTLGDD SLALTSTL+S+P RDP
Sbjct: 421 CEITQNTVCSPVDVD--EMCLLTVRRTFNGSGTYCVNLTLGDDTSLALTSTLISVPDRDP 478
Query: 1513 AFLLRMTNGILVFVGFLTIFVTVIAILVSKKYRKYKAIESNTGIVVKDKGLNVFLSRAKT 1692
A LRM N L+ VG L IFVTVI++LV KK+++Y IE++ G VV+ KGL+VFL+RAK
Sbjct: 479 ASPLRMANSALISVGCLAIFVTVISLLVYKKHKEYNPIENSPGNVVRSKGLSVFLNRAKA 538
Query: 1693 MFFPGNQEKD 1722
+FFPGNQEKD
Sbjct: 539 VFFPGNQEKD 548
>ref|NP_001005340.1| glycoprotein (transmembrane) nmb isoform a precursor [Homo sapiens]
Length = 572
Score = 820 bits (2118), Expect = 0.0
Identities = 400/562 (71%), Positives = 452/562 (80%), Gaps = 17/562 (3%)
Frame = +1
Query: 88 MECLYCFXXXXXXXXXXXXXXXKRFQDVLSNERPSSYMREHNQLNGWSSDENDWNEKLYP 267
MECLY F KRF DVL NERPS+YMREHNQLNGWSSDENDWNEKLYP
Sbjct: 1 MECLYYFLGFLLLAARLPLDAAKRFHDVLGNERPSAYMREHNQLNGWSSDENDWNEKLYP 60
Query: 268 VWKRGDSRWKNSWKGGRVRAVLTSDSPALVGSTITFAVNLVFPRCQKEDADGNIVYEKNC 447
VWKRGD RWKNSWKGGRV+AVLTSDSPALVGS ITFAVNL+FPRCQKEDA+GNIVYEKNC
Sbjct: 61 VWKRGDMRWKNSWKGGRVQAVLTSDSPALVGSNITFAVNLIFPRCQKEDANGNIVYEKNC 120
Query: 448 RNDSGPSPDPYVYNWTAWTEDNDWRDGTSQGHHNVFPDGKPFPH--PWKR-NFVYVFHTL 618
RN++G S DPYVYNWTAW+ED+D +GT Q HHNVFPDGKPFPH W+R NF+YVFHTL
Sbjct: 121 RNEAGLSADPYVYNWTAWSEDSDGENGTGQSHHNVFPDGKPFPHHPGWRRWNFIYVFHTL 180
Query: 619 GQYFQKLGRCSVSVSINTANVTLGPQVMEVTVYRRHGRTYVPIAKVKDVYVVTDQIPIFV 798
GQYFQKLGRCSV VS+NTANVTLGPQ+MEVTVYRRHGR YVPIA+VKDVYVVTDQIP+FV
Sbjct: 181 GQYFQKLGRCSVRVSVNTANVTLGPQLMEVTVYRRHGRAYVPIAQVKDVYVVTDQIPVFV 240
Query: 799 TMSQKNNRNSSDEIFLKDLPIIFNVLIHDPSHFLNESAIYYKWNFGDNTGLFVSNNPIMN 978
TM QKN+RNSSDE FLKDLPI+F+VLIHDPSHFLN S I YKW+FGDNTGLFVS N +N
Sbjct: 241 TMFQKNDRNSSDETFLKDLPIMFDVLIHDPSHFLNYSTINYKWSFGDNTGLFVSTNHTVN 300
Query: 979 HTYVLNGTFSFNLTVQATVPGLC--------------XXXXXXXXXXXXXLFLAGGKPLE 1116
HTYVLNGTFS NLTV+A PG C AG PLE
Sbjct: 301 HTYVLNGTFSLNLTVKAAAPGPCPPPPPPPRPSKPTPSLATTLKSYDSNTPGPAGDNPLE 360
Query: 1117 LREIPVENCKINRYGYFMATITIVAGILQVNILQVTDVLTPGPQPDDSLVDFVLTCQGSI 1296
L IP ENC+INRYG+F ATITIV GIL+VNI+Q+TDVL P P P+ SL+DFV+TCQGSI
Sbjct: 361 LSRIPDENCQINRYGHFQATITIVEGILEVNIIQMTDVLMPVPWPESSLIDFVVTCQGSI 420
Query: 1297 PTEICTIISDPTCQVTQDTVCNTVDEDLGDTCLLTVRRAFSSPGTHCMNLTLGDDASLAL 1476
PTE+CTIISDPTC++TQ+TVC+ VD D + CLLTVRR F+ GT+C+NLTLGDD SLAL
Sbjct: 421 PTEVCTIISDPTCEITQNTVCSPVDVD--EMCLLTVRRTFNGSGTYCVNLTLGDDTSLAL 478
Query: 1477 TSTLVSIPGRDPAFLLRMTNGILVFVGFLTIFVTVIAILVSKKYRKYKAIESNTGIVVKD 1656
TSTL+S+P RDPA LRM N L+ VG L IFVTVI++LV KK+++Y IE++ G VV+
Sbjct: 479 TSTLISVPDRDPASPLRMANSALISVGCLAIFVTVISLLVYKKHKEYNPIENSPGNVVRS 538
Query: 1657 KGLNVFLSRAKTMFFPGNQEKD 1722
KGL+VFL+RAK +FFPGNQEKD
Sbjct: 539 KGLSVFLNRAKAVFFPGNQEKD 560
>ref|NP_008859.1| silver homolog [Homo sapiens]
Length = 661
Score = 172 bits (437), Expect = 1e-42
Identities = 94/268 (35%), Positives = 148/268 (55%), Gaps = 4/268 (1%)
Frame = +1
Query: 247 WNEKLYPVWKRGDSRWKNSWKGGRVRAVLTSDSPALVGSTITFAVNLVFPRCQKEDADGN 426
WN +LYP W +++ + W+GG+V +++D P L+G+ +F++ L FP QK DG
Sbjct: 44 WNRQLYPEWT--EAQRLDCWRGGQVSLKVSNDGPTLIGANASFSIALNFPGSQKVLPDGQ 101
Query: 427 IVYEKNCRNDSGPSPDPYVYNWTAWTEDNDWRDGTSQGHHNVFPDGKPFPH-PW--KRNF 597
+++ N + W + T +FPDG P P W KR+F
Sbjct: 102 VIWVNNT----------IINGSQVWGGQPVYPQETDDAC--IFPDGGPCPSGSWSQKRSF 149
Query: 598 VYVFHTLGQYFQKLGRCSVSVSINTANVTLGPQVMEVTVYRRHG-RTYVPIAKVKDVYVV 774
VYV+ T GQY+Q LG +SI T LG MEVTVY R G R+YVP+A + +
Sbjct: 150 VYVWKTWGQYWQVLGGPVSGLSIGTGRAMLGTHTMEVTVYHRRGSRSYVPLAHSSSAFTI 209
Query: 775 TDQIPIFVTMSQKNNRNSSDEIFLKDLPIIFNVLIHDPSHFLNESAIYYKWNFGDNTGLF 954
TDQ+P V++SQ + ++ FL++ P+ F + +HDPS +L E+ + Y W+FGD++G
Sbjct: 210 TDQVPFSVSVSQLRALDGGNKHFLRNQPLTFALQLHDPSGYLAEADLSYTWDFGDSSGTL 269
Query: 955 VSNNPIMNHTYVLNGTFSFNLTVQATVP 1038
+S ++ HTY+ G + + +QA +P
Sbjct: 270 ISRALVVTHTYLEPGPVTAQVVLQAAIP 297
Score = 80.5 bits (197), Expect = 7e-15
Identities = 52/166 (31%), Positives = 81/166 (48%), Gaps = 1/166 (0%)
Frame = +1
Query: 1120 REIPVENCKINRYGYFMATITIVAGILQVNILQVTDVLTPGPQPDDSLVDFVLTCQGSIP 1299
R++P++ C + RYG F T+ IV GI ILQ P + + ++CQG +P
Sbjct: 469 RQVPLD-CVLYRYGSFSVTLDIVQGIESAEILQAV------PSGEGDAFELTVSCQGGLP 521
Query: 1300 TEICTIISDPTCQVTQDTVCNTVDEDLGDTCLLTVRRAF-SSPGTHCMNLTLGDDASLAL 1476
E C IS P CQ +C V C L + + GT+C+N++L D SLA+
Sbjct: 522 KEACMEISSPGCQPPAQRLCQPVLP--SPACQLVLHQILKGGSGTYCLNVSLADTNSLAV 579
Query: 1477 TSTLVSIPGRDPAFLLRMTNGILVFVGFLTIFVTVIAILVSKKYRK 1614
ST + +PG++ + + VG L + + V +L S YR+
Sbjct: 580 VSTQLIMPGQEAGL-----GQVPLIVGILLVLMAV--VLASLIYRR 618
Database: RefSeqHP
Posted date: Aug 2, 2006 12:57 AM
Number of letters in database: 17,774,539
Number of sequences in database: 39,411
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,071,691
Number of Sequences: 39411
Number of extensions: 2913635
Number of successful extensions: 7572
Number of sequences better than 1.0e-05: 3
Number of HSP's better than 0.0 without gapping: 6093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7515
length of database: 17,774,539
effective HSP length: 111
effective length of database: 13,399,918
effective search space used: 10559135384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqSP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AMP01_0020_E09
(2700 letters)
Database: RefSeqSP
1040 sequences; 434,620 total letters
Searching...done
***** No hits found ******
Database: RefSeqSP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 434,620
Number of sequences in database: 1040
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,589,274
Number of Sequences: 1040
Number of extensions: 69081
Number of successful extensions: 188
Number of sequences better than 1.0e-05: 0
Number of HSP's better than 0.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 434,620
effective HSP length: 85
effective length of database: 346,220
effective search space used: 281823080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AMP01_0020_E09
(2700 letters)
Database: RefSeqMP
45,328 sequences; 21,768,885 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_444340.2| glycoprotein (transmembrane) nmb [Mus musculus] 717 0.0
Alignment gi|NP_068682.2| silver [Mus musculus] 172 1e-42
Alignment gi|NP_808403.2| transmembrane protein 130 [Mus musculus] 55 3e-07
>ref|NP_444340.2| glycoprotein (transmembrane) nmb [Mus musculus]
Length = 574
Score = 717 bits (1851), Expect = 0.0
Identities = 351/544 (64%), Positives = 419/544 (77%), Gaps = 21/544 (3%)
Frame = +1
Query: 154 KRFQDVLSNERPSSYMREHNQLNGWSSDENDWNEKLYPVWKRGDSRWKNSWKGGRVRAVL 333
KRF+DVL +E+ ++MREHNQL GWSSDEN+W+E LYPVW+RGD RWK+SW+GGRV+AVL
Sbjct: 23 KRFRDVLGHEQYPNHMREHNQLRGWSSDENEWDEHLYPVWRRGDGRWKDSWEGGRVQAVL 82
Query: 334 TSDSPALVGSTITFAVNLVFPRCQKEDADGNIVYEKNCRNDSGPSPDPYVYNWTAWTEDN 513
TSDSPALVGS ITF VNLVFPRCQKEDA+GNIVYEKNCRND G + D +VYNWTA +D
Sbjct: 83 TSDSPALVGSNITFVVNLVFPRCQKEDANGNIVYEKNCRNDLGLTSDLHVYNWTAGADDG 142
Query: 514 DWRDGTSQGHHNVFPDGKPFPHP--WKR-NFVYVFHTLGQYFQKLGRCSVSVSINTANVT 684
DW DGTS+ H FPD +PFP P WK+ +FVYVFHTLGQYFQKLGRCS VSINT N+T
Sbjct: 143 DWEDGTSRSQHLRFPDRRPFPRPHGWKKWSFVYVFHTLGQYFQKLGRCSARVSINTVNLT 202
Query: 685 LGPQVMEVTVYRRHGRTYVPIAKVKDVYVVTDQIPIFVTMSQKNNRNSSDEIFLKDLPII 864
GPQVMEVTV+RR+GR Y+PI+KVKDVYV+TDQIP+FVTMSQKN+RN SDEIFL+DLPI+
Sbjct: 203 AGPQVMEVTVFRRYGRAYIPISKVKDVYVITDQIPVFVTMSQKNDRNLSDEIFLRDLPIV 262
Query: 865 FNVLIHDPSHFLNESAIYYKWNFGDNTGLFVSNNPIMNHTYVLNGTFSFNLTVQATVPGL 1044
F+VLIHDPSHFLN+SAI YKWNFGDNTGLFVSNN +NHTYVLNGTF+ NLTVQ VPG
Sbjct: 263 FDVLIHDPSHFLNDSAISYKWNFGDNTGLFVSNNHTLNHTYVLNGTFNLNLTVQTAVPGP 322
Query: 1045 CXXXXXXX------------------XXXXXXLFLAGGKPLELREIPVENCKINRYGYFM 1170
C L G K +EL +I ENC+INRYGYF
Sbjct: 323 CPPPSPSTPPPPSTPPSPPPSPLPTLSTPSPSLMPTGYKSMELSDISNENCRINRYGYFR 382
Query: 1171 ATITIVAGILQVNILQVTDVLTPGPQPDDSLVDFVLTCQGSIPTEICTIISDPTCQVTQD 1350
ATITIV GIL+V+I+Q+ DV P PQP +SL+DF +TC+G+ P E CTIISDPTCQ+ Q+
Sbjct: 383 ATITIVEGILEVSIMQIADVPMPTPQPANSLMDFTVTCKGATPMEACTIISDPTCQIAQN 442
Query: 1351 TVCNTVDEDLGDTCLLTVRRAFSSPGTHCMNLTLGDDASLALTSTLVSIPGRDPAFLLRM 1530
VC+ V D CLL+VRRAF+ GT+C+N TLGDDASLALTSTL+SIPG+DP +R
Sbjct: 443 RVCSPVAVD--GLCLLSVRRAFNGSGTYCVNFTLGDDASLALTSTLISIPGKDPDSPMRA 500
Query: 1531 TNGILVFVGFLTIFVTVIAILVSKKYRKYKAIESNTGIVVKDKGLNVFLSRAKTMFFPGN 1710
NG+L+ +G L + VT++ IL+ KK++ YK I + V+ KGL+V LS AK FF G+
Sbjct: 501 VNGVLISIGCLAVLVTMVTILLYKKHKAYKPIGNCPRNTVEGKGLSVLLSHAKAPFFRGD 560
Query: 1711 QEKD 1722
QEKD
Sbjct: 561 QEKD 564
>ref|NP_068682.2| silver [Mus musculus]
Length = 626
Score = 172 bits (437), Expect = 1e-42
Identities = 101/269 (37%), Positives = 150/269 (55%), Gaps = 5/269 (1%)
Frame = +1
Query: 247 WNEKLYPVWKRGDSRWKNSWKGGRVRAVLTSDSPALVGSTITFAVNLVFPRCQKEDADGN 426
WN +LYP W + + N W+GG+V + +D P LVG+ +F++ L FP QK DG
Sbjct: 43 WNRQLYPEWT--EVQGSNCWRGGQVSLRVINDGPTLVGANASFSIALHFPGSQKVLPDGQ 100
Query: 427 IVYEKNCR-NDSGPSPDPYVYNWTAWTEDNDWRDGTSQGHHNVFPDGKPFPH---PWKRN 594
+++ N N S VY E +D VFPDG P P P KR+
Sbjct: 101 VIWANNTIINGSQVWGGQPVYP----QEPDD---------ACVFPDGGPCPSGPKPPKRS 147
Query: 595 FVYVFHTLGQYFQKLGRCSVSVSINTANVTLGPQVMEVTVYRRHG-RTYVPIAKVKDVYV 771
FVYV+ T G+Y+Q LG +SI T + LG MEVTVY R G ++YVP+A +
Sbjct: 148 FVYVWKTWGKYWQVLGGPVSRLSIATGHAKLGTHTMEVTVYHRRGSQSYVPLAHASSTFT 207
Query: 772 VTDQIPIFVTMSQKNNRNSSDEIFLKDLPIIFNVLIHDPSHFLNESAIYYKWNFGDNTGL 951
+TDQ+P V++SQ + + FL++ P+IF + +HDPS +L E+ + Y W+FGD TG
Sbjct: 208 ITDQVPFSVSVSQLQALDGETKHFLRNHPLIFALQLHDPSGYLAEADLSYTWDFGDGTGT 267
Query: 952 FVSNNPIMNHTYVLNGTFSFNLTVQATVP 1038
+S + HTY+ +G+ + + +QA +P
Sbjct: 268 LISRALDVTHTYLESGSVTAQVVLQAAIP 296
Score = 80.5 bits (197), Expect = 9e-15
Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 1/168 (0%)
Frame = +1
Query: 1120 REIPVENCKINRYGYFMATITIVAGILQVNILQVTDVLTPGPQPDDSLVDFVLTCQGSIP 1299
R++P++ C + RYG F + IV GI ILQ P + + ++CQG +P
Sbjct: 435 RQVPLD-CVLYRYGSFSLALDIVQGIESAEILQAV------PFSEGDAFELTVSCQGGLP 487
Query: 1300 TEICTIISDPTCQVTQDTVCNTVDEDLGDTCLLTVRRAF-SSPGTHCMNLTLGDDASLAL 1476
E C IS P CQ +C +V C L + + GT+C+N++L D SLA+
Sbjct: 488 KEACMDISSPGCQPPAQRLCQSVPP--SPDCQLVLHQVLKGGSGTYCLNVSLADANSLAV 545
Query: 1477 TSTLVSIPGRDPAFLLRMTNGILVFVGFLTIFVTVIAILVSKKYRKYK 1620
ST + +PG+D + VG L + V V+ + ++R K
Sbjct: 546 ASTQLVVPGQDGGL-----GQAPLLVGILLVLVAVVLASLIHRHRLKK 588
>ref|NP_808403.2| transmembrane protein 130 [Mus musculus]
Length = 419
Score = 55.5 bits (132), Expect = 3e-07
Identities = 47/190 (24%), Positives = 77/190 (40%), Gaps = 2/190 (1%)
Frame = +1
Query: 874 LIHDPSHFLNESAIYYKWNFGDNTGLFVSNNPIMNHTYVLNGTFSFNLTVQATVPGLCXX 1053
L+HDPS F ++ +Y+W+FGD T L +++NP++ + Y GTF+ + V A
Sbjct: 159 LLHDPSDFFKSASFFYRWDFGDGT-LLITDNPVVYYNYSSPGTFTVKVRVVA-------- 209
Query: 1054 XXXXXXXXXXXLFLAGGKPLELREIPVENCK--INRYGYFMATITIVAGILQVNILQVTD 1227
E +I + K I + G F A++ + + + IL T
Sbjct: 210 --------------------EWEQIKPDTTKGTIQKTGDFSASLDLRESLQGIQILGPTL 249
Query: 1228 VLTPGPQPDDSLVDFVLTCQGSIPTEICTIISDPTCQVTQDTVCNTVDEDLGDTCLLTVR 1407
+ T + L GS P +C + P C +D C+ V L +
Sbjct: 250 LQT------FQKLTMNLNFFGSPPLHVCWGLK-PQCLPLEDRECHAV---LVTRTSFNLT 299
Query: 1408 RAFSSPGTHC 1437
F PG +C
Sbjct: 300 HVFQDPGDYC 309
Database: RefSeqMP
Posted date: Aug 2, 2006 12:58 AM
Number of letters in database: 21,768,885
Number of sequences in database: 45,328
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127,435,429
Number of Sequences: 45328
Number of extensions: 3433714
Number of successful extensions: 9129
Number of sequences better than 1.0e-05: 3
Number of HSP's better than 0.0 without gapping: 7513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9105
length of database: 21,768,885
effective HSP length: 113
effective length of database: 16,646,821
effective search space used: 13084401306
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)