Animal-Genome cDNA LVRM1_0014_E05


Search to RefSeqBP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= LVRM1_0014_E05
         (1330 letters)

Database: RefSeqBP 
           33,508 sequences; 16,112,626 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_591832.2| PREDICTED: similar to Dehydrogenase/reductase S...   552   e-157
Alignment   gi|NP_001030420.1| hypothetical protein LOC522283 [Bos taurus]       146   4e-35
Alignment   gi|XP_589371.1| PREDICTED: similar to CG7601-PA [Bos taurus]         105   6e-23
Alignment   gi|XP_872682.1| PREDICTED: similar to Dehydrogenase/reductase S...    94   3e-19
Alignment   gi|XP_581861.2| PREDICTED: similar to follicular lymphoma varia...    93   4e-19
Alignment   gi|NP_776592.1| retinol dehydrogenase 8 (all-trans) [Bos taurus]      92   9e-19
Alignment   gi|NP_996852.1| 11-beta-hydroxysteroid dehydrogenase type 3 [Bo...    89   8e-18
Alignment   gi|XP_879080.1| PREDICTED: similar to microsomal NAD+-dependent...    85   1e-16
Alignment   gi|XP_878985.1| PREDICTED: similar to microsomal NAD+-dependent...    85   1e-16
Alignment   gi|XP_878888.1| PREDICTED: similar to microsomal NAD+-dependent...    85   1e-16

>ref|XP_591832.2| PREDICTED: similar to Dehydrogenase/reductase SDR family member 7
            precursor (Retinal short-chain dehydrogenase/reductase 4)
            (retSDR4) [Bos taurus]
          Length = 339

 Score =  552 bits (1422), Expect = e-157
 Identities = 272/339 (80%), Positives = 296/339 (87%)
 Frame = +3

Query: 111  MSWEXXXXXXXXXXXXXXXXXXXXXXXXDGDLTLLWAEWQGRRPEWELTDMVVWVTGASS 290
            MSWE                        D DLTLLWAEWQGRRPEWELTDMVVWVTGASS
Sbjct: 1    MSWELLLWLLALCALLALVVQLLRFLRADADLTLLWAEWQGRRPEWELTDMVVWVTGASS 60

Query: 291  GIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLDLANRSSHEV 470
            GIGEEL YQLSKLGVSLVLSARR+ ELERVKR+CLENG LK KDILILPLDL +RSSHE+
Sbjct: 61   GIGEELAYQLSKLGVSLVLSARRMHELERVKRKCLENGNLKEKDILILPLDLTDRSSHEM 120

Query: 471  ATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTKCVLPHMIEK 650
            ATKAVLQEFG+IDILVNNGGVSQR+LCVDTSLDV+KEL+E+NYLGTVSLTKCVLPHMIE+
Sbjct: 121  ATKAVLQEFGRIDILVNNGGVSQRALCVDTSLDVFKELIELNYLGTVSLTKCVLPHMIER 180

Query: 651  KQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGITVSNVCPGPVKSN 830
            KQGKI+TVNS +GIIAAPLS GYCASKHALRGFFNTLR+ELATYPGIT+SN+CPGPV+SN
Sbjct: 181  KQGKIVTVNSMVGIIAAPLSTGYCASKHALRGFFNTLRSELATYPGITISNICPGPVQSN 240

Query: 831  IVKNALTEEVTKTLGSDADQSHKMATSRCARLMLIAMANDLKEVWIAEQPFLSMAYLWQY 1010
            IVKNALTEEVTK  GS ADQS+KMATSRC RLML+AMANDLKEVWI++QPFL M YLWQY
Sbjct: 241  IVKNALTEEVTKPTGSTADQSYKMATSRCVRLMLVAMANDLKEVWISDQPFLLMIYLWQY 300

Query: 1011 IPTWAWWLTSKIGKKRIENFKSGVDADSSYFKIWKKKHD 1127
            +PT AWWLT+K  K+RIENFKSGVDADSSYF+  KKKHD
Sbjct: 301  MPTLAWWLTNKAAKRRIENFKSGVDADSSYFRSVKKKHD 339


>ref|NP_001030420.1| hypothetical protein LOC522283 [Bos taurus]
          Length = 325

 Score =  146 bits (368), Expect = 4e-35
 Identities = 89/247 (36%), Positives = 137/247 (55%), Gaps = 3/247 (1%)
 Frame = +3

Query: 264 VVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLEN---GILKGKDILIL 434
           VV +TGA+SG+G E        G  LVL  R  + LE + +    +   G+   K   + 
Sbjct: 54  VVVITGATSGLGRECARVFHAAGARLVLCGRNAEALEELSQELAASRAPGVQTHKPCTVT 113

Query: 435 PLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVS 614
             DLA+  +   A   +LQ FG +D+L+NN G+S R   VDTS DV K +ME NY G V+
Sbjct: 114 -FDLADPGAIAGAASEILQCFGHVDVLINNAGISYRGAIVDTSPDVDKRVMETNYFGPVA 172

Query: 615 LTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGIT 794
           LTK +LP MI ++QG ++ ++S  G I+ P    Y ASKHA + FF+ LR E+  +  I 
Sbjct: 173 LTKALLPAMIRRRQGHVVAISSIQGKISLPFRSAYAASKHATQAFFDCLRAEVEQH-DIE 231

Query: 795 VSNVCPGPVKSNIVKNALTEEVTKTLGSDADQSHKMATSRCARLMLIAMANDLKEVWIAE 974
           V+ + PG + +N+  NA+T + +K    D   +   +  + A+ +L A+    K+V +A+
Sbjct: 232 VTVISPGYIHTNLSLNAVTADGSKYGVMDETTAQGRSPVQVAQDILAALGKKKKDVVLAD 291

Query: 975 QPFLSMA 995
            P  S+A
Sbjct: 292 -PMPSLA 297


>ref|XP_589371.1| PREDICTED: similar to CG7601-PA [Bos taurus]
          Length = 311

 Score =  105 bits (263), Expect = 6e-23
 Identities = 66/189 (34%), Positives = 101/189 (53%), Gaps = 1/189 (0%)
 Frame = +3

Query: 264 VVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGI-LKGKDILILPL 440
           VV +T A SG+G+E        G  LVL  +  + L+ +    +      K     ++ L
Sbjct: 39  VVVITDAISGLGKECARVFHTGGARLVLCGKNWERLQSLYDALISVADPSKTFTPKLVLL 98

Query: 441 DLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLT 620
           DL++ S  +   K VL  +G +DIL+NN  V  +      SL++ K++M+ NY G + LT
Sbjct: 99  DLSDISCVQDVAKEVLDCYGCVDILINNASVKVKGPAHKISLELDKKIMDANYFGPIILT 158

Query: 621 KCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGITVS 800
           K +LP MI ++ G+I+ VN+  G +  P    Y ASKHA  GFF+ LR E+  Y  + VS
Sbjct: 159 KALLPDMISRRTGQIVLVNNIQGKLGIPFRTAYAASKHAALGFFDCLRAEVEEY-DVVVS 217

Query: 801 NVCPGPVKS 827
            V P  ++S
Sbjct: 218 TVSPTFIRS 226


>ref|XP_872682.1| PREDICTED: similar to Dehydrogenase/reductase SDR family member 8
           precursor (17-beta-hydroxysteroid dehydrogenase 11)
           (17-beta-HSD 11) (17-beta-HSD XI) (17betaHSDXI)
           (17bHSD11) (17betaHSD11) (Retinal short-chain
           dehydrogenase/reductase 2) (retSDR2) (Cutaneous... iso
           [Bos taurus]
          Length = 316

 Score = 93.6 bits (231), Expect = 3e-19
 Identities = 64/202 (31%), Positives = 91/202 (45%), Gaps = 2/202 (0%)
 Frame = +3

Query: 252 LTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILI 431
           +T  +V +TGA  GIG +  Y+ +KL   LVL       +E +   C E        + I
Sbjct: 50  VTGEIVLITGAGHGIGRQTAYEFAKLKCKLVLWDINKVIVESLGYLCREGST----KVFI 105

Query: 432 LPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTV 611
             ++ +  S    A + V  E G + ILVNN GV   S    T     ++  EVN L   
Sbjct: 106 FIMNCSTESEMNQAAQEVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNILAHF 165

Query: 612 SLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATY--P 785
             TK  LP M++   G I+TV S  G    P    YC+SK A  GF   L  EL+     
Sbjct: 166 WTTKAFLPEMMKNNHGHIVTVASAAGHTGVPFLLAYCSSKFAAVGFHKALTEELSALKRT 225

Query: 786 GITVSNVCPGPVKSNIVKNALT 851
           G+  + +CP  + +  +KN  T
Sbjct: 226 GVKTTCLCPNFINTGFIKNPST 247


>ref|XP_581861.2| PREDICTED: similar to follicular lymphoma variant translocation 1
           [Bos taurus]
          Length = 455

 Score = 93.2 bits (230), Expect = 4e-19
 Identities = 74/277 (26%), Positives = 127/277 (45%), Gaps = 31/277 (11%)
 Frame = +3

Query: 225 WQGRRPEWELTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENG 404
           W+  +P   LT     VTG SSGIG+ +  +  K G  + L AR   +L + K+   ++ 
Sbjct: 149 WKQPKPHALLT-----VTGGSSGIGKCIAIECYKQGAFITLVARNEDKLLQAKKEIEKHS 203

Query: 405 ILKGKDILILPLDLANRSSH-EVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKE 581
           I   + +L + +D++   S  E   K   ++ G +D+LVN  G+S      D  +  ++ 
Sbjct: 204 INDKQVVLCISVDVSQDYSQVENVIKQAQEKLGPVDMLVNCAGMSLSGKFEDLEVSTFER 263

Query: 582 LMEVNYLGTVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTL 761
           LM +NYLG+V  ++ V+  M E++ G+++ V+S  G +       Y +SK ALRG    L
Sbjct: 264 LMSINYLGSVYPSRAVIATMKERRMGRVVFVSSQAGQLGLFGYTAYSSSKFALRGLAEAL 323

Query: 762 RTELATY--------------PGITVSN---------------VC-PGPVKSNIVKNALT 851
           + E+  Y              PG    N               VC P  V   IVK+A+ 
Sbjct: 324 QMEVKPYNVYVTVAYPPDTDTPGFAKENQTKPLETRLISETTSVCKPEQVAKQIVKDAVQ 383

Query: 852 EEVTKTLGSDADQSHKMATSRCARLMLIAMANDLKEV 962
                ++GSD    + +++  C    + ++   L++V
Sbjct: 384 GNFNSSIGSD---GYMLSSLTCGMAPVTSIMEGLQQV 417


>ref|NP_776592.1| retinol dehydrogenase 8 (all-trans) [Bos taurus]
          Length = 312

 Score = 92.0 bits (227), Expect = 9e-19
 Identities = 67/208 (32%), Positives = 100/208 (48%), Gaps = 1/208 (0%)
 Frame = +3

Query: 267 VWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLDL 446
           V ++G SSGIG EL  QL+            +++L +        G   G+ + +  LD+
Sbjct: 8   VLISGCSSGIGLELAVQLAHDPRQRYQVVATMRDLGKKGTLETAAGEALGQTLTVAQLDV 67

Query: 447 ANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTKC 626
              S   VA      + G++D+LVNN GV         SL   + + + N+ G V L K 
Sbjct: 68  C--SDESVAQCLNCIQGGEVDVLVNNAGVGLVGPLEGLSLAAMQNVFDTNFFGAVRLVKA 125

Query: 627 VLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGITVSNV 806
           VLP M  ++QG I+ V+S MG+     +  Y ASK A+ GFF +L  +L  +  I +S V
Sbjct: 126 VLPSMKRRRQGHIVVVSSVMGLQGVVFNEVYAASKFAMEGFFESLAVQLLQF-NIFISLV 184

Query: 807 CPGPVKSNIVKNALTEEVTKTL-GSDAD 887
            PGPV +      L +  T    G+D D
Sbjct: 185 EPGPVVTEFEGKLLEQVSTAEFPGTDPD 212


>ref|NP_996852.1| 11-beta-hydroxysteroid dehydrogenase type 3 [Bos taurus]
          Length = 287

 Score = 89.0 bits (219), Expect = 8e-18
 Identities = 60/170 (35%), Positives = 92/170 (54%), Gaps = 1/170 (0%)
 Frame = +3

Query: 267 VWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLDL 446
           V +TG S+GIGEEL Y  ++LG  LVL+A     L++V   C + G  K   +  +  D+
Sbjct: 32  VLLTGVSAGIGEELAYHYARLGSHLVLTAHTEALLQQVVGNCRKLGAPK---VFYIAADM 88

Query: 447 ANRSSHEVATKAVLQEFGKIDILV-NNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTK 623
           A+    E   +  L + G +D LV N+ G +     V +S    + LM++N+L  V LT 
Sbjct: 89  ASPEVPERVVQFALDKLGGLDYLVLNHLGAAPAGTRVRSSQST-RWLMQMNFLSYVQLTS 147

Query: 624 CVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTEL 773
             LP + + K G ++ V+S +G +    S  Y A+K AL  FF++LR EL
Sbjct: 148 SALPSLTDSK-GSLVVVSSLLGRVPTSFSSPYSAAKFALDSFFSSLRREL 196


>ref|XP_879080.1| PREDICTED: similar to microsomal NAD+-dependent retinol
           dehydrogenase 4 isoform 5 [Bos taurus]
          Length = 317

 Score = 84.7 bits (208), Expect = 1e-16
 Identities = 62/198 (31%), Positives = 105/198 (53%), Gaps = 4/198 (2%)
 Frame = +3

Query: 252 LTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILI 431
           L D  V++TG  SG G  L  QL   G+ ++ +    +  E+++ +  +        +  
Sbjct: 27  LRDKFVFITGCDSGFGNLLARQLDLRGLRVLAACLTEKGAEQLRNQTSDR-------LQT 79

Query: 432 LPLDLANRSSHEVATKAVLQEFGKIDI--LVNNGGVSQRSLCVD--TSLDVYKELMEVNY 599
           + LD+    S   AT+ V +  G   +  LVNN G+S  +   +  T  D  K +++VN 
Sbjct: 80  VILDVTKTDSVAAATEWVKERVGDRGLWGLVNNAGISTPTAPNEWLTKQDFMK-ILDVNL 138

Query: 600 LGTVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELAT 779
           LG + +T  VLP ++ K +G+++ V+S MG +A  L GGYC SK+ +  F ++LR EL +
Sbjct: 139 LGVIDVTLSVLP-LVRKARGRVVNVSSIMGRVAL-LGGGYCMSKYGVEAFSDSLRREL-S 195

Query: 780 YPGITVSNVCPGPVKSNI 833
           Y G+ V  + PG  K+ +
Sbjct: 196 YFGVKVVMIEPGYFKTAV 213


>ref|XP_878985.1| PREDICTED: similar to microsomal NAD+-dependent retinol
           dehydrogenase 4 isoform 4 [Bos taurus]
          Length = 317

 Score = 84.7 bits (208), Expect = 1e-16
 Identities = 62/198 (31%), Positives = 105/198 (53%), Gaps = 4/198 (2%)
 Frame = +3

Query: 252 LTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILI 431
           L D  V++TG  SG G  L  QL   G+ ++ +    +  E+++ +  +        +  
Sbjct: 27  LRDKFVFITGCDSGFGNLLARQLDLRGLRVLAACLTEKGAEQLRNQTSDR-------LQT 79

Query: 432 LPLDLANRSSHEVATKAVLQEFGKIDI--LVNNGGVSQRSLCVD--TSLDVYKELMEVNY 599
           + LD+    S   AT+ V +  G   +  LVNN G+S  +   +  T  D  K +++VN 
Sbjct: 80  VILDVTKTDSVAAATEWVKERVGDRGLWGLVNNAGISTPTAPNEWLTKQDFMK-ILDVNL 138

Query: 600 LGTVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELAT 779
           LG + +T  VLP ++ K +G+++ V+S MG +A  L GGYC SK+ +  F ++LR EL +
Sbjct: 139 LGVIDVTLSVLP-LVRKARGRVVNVSSIMGRVAL-LGGGYCMSKYGVEAFSDSLRREL-S 195

Query: 780 YPGITVSNVCPGPVKSNI 833
           Y G+ V  + PG  K+ +
Sbjct: 196 YFGVKVVMIEPGYFKTAV 213


>ref|XP_878888.1| PREDICTED: similar to microsomal NAD+-dependent retinol
           dehydrogenase 4 isoform 3 [Bos taurus]
          Length = 317

 Score = 84.7 bits (208), Expect = 1e-16
 Identities = 62/198 (31%), Positives = 105/198 (53%), Gaps = 4/198 (2%)
 Frame = +3

Query: 252 LTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILI 431
           L D  V++TG  SG G  L  QL   G+ ++ +    +  E+++ +  +        +  
Sbjct: 27  LRDKFVFITGCDSGFGNLLARQLDLRGLRVLAACLTEKGAEQLRNQTSDR-------LQT 79

Query: 432 LPLDLANRSSHEVATKAVLQEFGKIDI--LVNNGGVSQRSLCVD--TSLDVYKELMEVNY 599
           + LD+    S   AT+ V +  G   +  LVNN G+S  +   +  T  D  K +++VN 
Sbjct: 80  VILDVTKTDSVAAATEWVKERVGDRGLWGLVNNAGISTPTAPNEWLTKQDFMK-ILDVNL 138

Query: 600 LGTVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELAT 779
           LG + +T  VLP ++ K +G+++ V+S MG +A  L GGYC SK+ +  F ++LR EL +
Sbjct: 139 LGVIDVTLSVLP-LVRKARGRVVNVSSIMGRVAL-LGGGYCMSKYGVEAFSDSLRREL-S 195

Query: 780 YPGITVSNVCPGPVKSNI 833
           Y G+ V  + PG  K+ +
Sbjct: 196 YFGVKVVMIEPGYFKTAV 213


  Database: RefSeqBP
    Posted date:  Aug 1, 2006  7:14 PM
  Number of letters in database: 16,112,626
  Number of sequences in database:  33,508
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,522,234
Number of Sequences: 33508
Number of extensions: 1023221
Number of successful extensions: 2939
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 2668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2880
length of database: 16,112,626
effective HSP length: 105
effective length of database: 12,594,286
effective search space used: 4244274382
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqCP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= LVRM1_0014_E05
         (1330 letters)

Database: RefSeqCP 
           33,732 sequences; 19,266,565 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_537465.2| PREDICTED: similar to Dehydrogenase/reductase S...   564   e-161
Alignment   gi|XP_536670.2| PREDICTED: similar to CG7601-PA [Canis familiaris]   149   8e-36
Alignment   gi|XP_536640.2| PREDICTED: similar to CG7601-PA isoform 1 [Cani...   105   8e-23
Alignment   gi|XP_861006.1| PREDICTED: similar to CG7601-PA isoform 2 [Cani...   104   2e-22
Alignment   gi|NP_001005756.1| 11-beta-hydroxysteroid dehydrogenase 1 [Cani...    94   4e-19
Alignment   gi|XP_535646.2| PREDICTED: similar to alcohol dehydrogenase PAN...    93   5e-19
Alignment   gi|XP_850000.1| PREDICTED: similar to hydroxysteroid (17-beta) ...    93   5e-19
Alignment   gi|XP_544970.2| PREDICTED: similar to dehydrogenase/reductase (...    93   5e-19
Alignment   gi|XP_854042.1| PREDICTED: similar to retinol dehydrogenase 8 (...    93   7e-19
Alignment   gi|XP_852048.1| PREDICTED: similar to follicular lymphoma varia...    89   1e-17

>ref|XP_537465.2| PREDICTED: similar to Dehydrogenase/reductase SDR family member 7
            precursor (Retinal short-chain dehydrogenase/reductase 4)
            (retSDR4) [Canis familiaris]
          Length = 437

 Score =  564 bits (1454), Expect = e-161
 Identities = 275/349 (78%), Positives = 299/349 (85%)
 Frame = +3

Query: 81   SPQSRACAAVMSWEXXXXXXXXXXXXXXXXXXXXXXXXDGDLTLLWAEWQGRRPEWELTD 260
            SP SRA AA MSWE                        DGDLTLLWAEWQGRRPEWELTD
Sbjct: 89   SPASRARAAAMSWELLLWLLALGALLALLVQLLRFVRADGDLTLLWAEWQGRRPEWELTD 148

Query: 261  MVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPL 440
            MV+WVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILK KDI +LPL
Sbjct: 149  MVIWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKEKDIFVLPL 208

Query: 441  DLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLT 620
            DL +RSSHE ATKAVLQEFGKIDILVNNGG SQRSLCVDT+LDV+KELME+NYLGTVSLT
Sbjct: 209  DLTDRSSHEAATKAVLQEFGKIDILVNNGGQSQRSLCVDTNLDVFKELMELNYLGTVSLT 268

Query: 621  KCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGITVS 800
             CVLPHMIE+KQGKI+TVNS +GII+APLS GYCASKHALRGFFN LR ELA YPGI +S
Sbjct: 269  MCVLPHMIERKQGKIVTVNSLLGIISAPLSSGYCASKHALRGFFNCLRVELAEYPGIVIS 328

Query: 801  NVCPGPVKSNIVKNALTEEVTKTLGSDADQSHKMATSRCARLMLIAMANDLKEVWIAEQP 980
            N+CPGPV+SNIVKN+LTEEVTK++G D  QSHKMATSRC RLMLI+MANDLKEVWIA+ P
Sbjct: 329  NICPGPVQSNIVKNSLTEEVTKSVGIDTVQSHKMATSRCVRLMLISMANDLKEVWIADHP 388

Query: 981  FLSMAYLWQYIPTWAWWLTSKIGKKRIENFKSGVDADSSYFKIWKKKHD 1127
            FL + YLWQY+PTWAWWLT+ +GKKRIENFK+G+DAD SYFK WK KHD
Sbjct: 389  FLLVVYLWQYMPTWAWWLTNILGKKRIENFKNGLDADISYFKTWKTKHD 437


>ref|XP_536670.2| PREDICTED: similar to CG7601-PA [Canis familiaris]
          Length = 325

 Score =  149 bits (375), Expect = 8e-36
 Identities = 88/243 (36%), Positives = 136/243 (55%), Gaps = 2/243 (0%)
 Frame = +3

Query: 252 LTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDI-- 425
           L + VV +TGA+SG+G E        G  LVL  R  + LE + +    +   K +    
Sbjct: 50  LRNAVVVITGATSGLGRECARVFYTAGAKLVLCGRNQKALEELTKELTASPATKVQTHKP 109

Query: 426 LILPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLG 605
            ++  DLA+  +   AT  +LQ FG +D+L+NN G+S R   VDT+ DV K++ME NY G
Sbjct: 110 YMVTFDLADPGAIIAATAEILQCFGYVDVLINNAGISYRGAIVDTTTDVDKKVMETNYFG 169

Query: 606 TVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYP 785
            V+LTK +LP MI+++QG I+ ++S  G I+ P    Y ASKHA + FF+ LR E+  Y 
Sbjct: 170 PVALTKALLPSMIKRRQGHIVVISSIQGKISIPFRSAYAASKHATQAFFDCLRAEMEQYE 229

Query: 786 GITVSNVCPGPVKSNIVKNALTEEVTKTLGSDADQSHKMATSRCARLMLIAMANDLKEVW 965
            I V+ + PG + +N+  NA+T + +     D   +   +    AR +L A+    K+V 
Sbjct: 230 -IEVTVISPGYIHTNLSLNAVTADGSTYGVMDKTTAQGRSPVEVARDVLAAVGKKKKDVI 288

Query: 966 IAE 974
           +A+
Sbjct: 289 LAD 291


>ref|XP_536640.2| PREDICTED: similar to CG7601-PA isoform 1 [Canis familiaris]
          Length = 311

 Score =  105 bits (263), Expect = 8e-23
 Identities = 66/194 (34%), Positives = 104/194 (53%), Gaps = 6/194 (3%)
 Frame = +3

Query: 264 VVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDIL----- 428
           VV +T A SG+G+E        G  LVL  +  + L+      L + ++   D       
Sbjct: 39  VVVITDAISGLGKECARVFHTGGARLVLCGKNWERLQ-----ILYDALISVADPSKTFTP 93

Query: 429 -ILPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLG 605
            ++ LDL++ S  +   K VL  +G +DIL+NN  +  +      SL++ K++M+ NY G
Sbjct: 94  KLVLLDLSDISCVQDVAKEVLDCYGCVDILINNASMKVKGPAHKISLELDKKIMDANYFG 153

Query: 606 TVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYP 785
            ++LTK +LP MI ++ G+I+ VN+  G +  P    Y ASKHA  GFF+ LR E+  Y 
Sbjct: 154 PITLTKALLPDMISRRTGQIVLVNNIQGKLGIPFRTAYAASKHAALGFFDCLRAEVEEY- 212

Query: 786 GITVSNVCPGPVKS 827
            + VS V P  ++S
Sbjct: 213 DVVVSTVSPTFIRS 226


>ref|XP_861006.1| PREDICTED: similar to CG7601-PA isoform 2 [Canis familiaris]
          Length = 317

 Score =  104 bits (260), Expect = 2e-22
 Identities = 65/189 (34%), Positives = 101/189 (53%), Gaps = 6/189 (3%)
 Frame = +3

Query: 264 VVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDIL----- 428
           VV +T A SG+G+E        G  LVL  +  + L+      L + ++   D       
Sbjct: 39  VVVITDAISGLGKECARVFHTGGARLVLCGKNWERLQ-----ILYDALISVADPSKTFTP 93

Query: 429 -ILPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLG 605
            ++ LDL++ S  +   K VL  +G +DIL+NN  +  +      SL++ K++M+ NY G
Sbjct: 94  KLVLLDLSDISCVQDVAKEVLDCYGCVDILINNASMKVKGPAHKISLELDKKIMDANYFG 153

Query: 606 TVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYP 785
            ++LTK +LP MI ++ G+I+ VN+  G +  P    Y ASKHA  GFF+ LR E+  Y 
Sbjct: 154 PITLTKALLPDMISRRTGQIVLVNNIQGKLGIPFRTAYAASKHAALGFFDCLRAEVEEY- 212

Query: 786 GITVSNVCP 812
            + VS V P
Sbjct: 213 DVVVSTVSP 221


>ref|NP_001005756.1| 11-beta-hydroxysteroid dehydrogenase 1 [Canis familiaris]
          Length = 293

 Score = 93.6 bits (231), Expect = 4e-19
 Identities = 66/219 (30%), Positives = 115/219 (52%), Gaps = 1/219 (0%)
 Frame = +3

Query: 237 RPEWELTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKG 416
           RPE  L    V VTGAS GIGE++ Y L+K+G  +V++AR  + L++V   CLE G    
Sbjct: 28  RPEM-LQGKKVIVTGASKGIGEQMAYHLAKMGAHVVVTARSKETLKKVVSHCLELGAASA 86

Query: 417 KDILILPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVN 596
                +P  + + +  E       +  G +D+L+ N   +         + + +  MEVN
Sbjct: 87  H---YIPGTMEDMTFAEQFVAKAGKLMGGLDMLILNHITNTSMNLFSGDIHLVRRSMEVN 143

Query: 597 YLGTVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTE-L 773
           +L  V L+   LP M+++  G I+ V+S  G +++PL   Y ASK AL GFF+++R E  
Sbjct: 144 FLSYVVLSAAALP-MLKQSNGSIVVVSSKAGKMSSPLVAPYSASKFALDGFFSSVRMEHS 202

Query: 774 ATYPGITVSNVCPGPVKSNIVKNALTEEVTKTLGSDADQ 890
            T   ++++    G + ++    A++  +  T+G+ + +
Sbjct: 203 VTKVNVSITLCILGLINTDTAMKAVS-GILSTVGASSKE 240


>ref|XP_535646.2| PREDICTED: similar to alcohol dehydrogenase PAN1B-like isoform 1
           [Canis familiaris]
          Length = 271

 Score = 93.2 bits (230), Expect = 5e-19
 Identities = 66/198 (33%), Positives = 90/198 (45%), Gaps = 2/198 (1%)
 Frame = +3

Query: 264 VVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLD 443
           +V +TGA  GIG    Y+ +K    LVL       +E     C +     G  +    +D
Sbjct: 38  IVLITGAGHGIGRWTAYEFAKQKSRLVLWDINKHGVEETAAECRK----LGATVHTFVVD 93

Query: 444 LANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTK 623
             NR     + K V +E G + ILVNN G    +  + T  +   +  E+N LG   +TK
Sbjct: 94  CGNREDIYNSVKQVKKEVGDVTILVNNAGTVYPADLLSTKDEEITKTFEINILGHFWITK 153

Query: 624 CVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELAT--YPGITV 797
            +LP MI++  G I+TV S  G    P    YC+SK A  GF   L  EL T    GI  
Sbjct: 154 ALLPSMIKRNHGHIVTVASVCGHGVIPYLIPYCSSKFAAVGFHRALTLELQTLGITGIKT 213

Query: 798 SNVCPGPVKSNIVKNALT 851
           S +CP  V +   KN  T
Sbjct: 214 SCLCPVFVNTGFTKNPST 231


>ref|XP_850000.1| PREDICTED: similar to hydroxysteroid (17-beta) dehydrogenase 13
           isoform 2 [Canis familiaris]
          Length = 300

 Score = 93.2 bits (230), Expect = 5e-19
 Identities = 66/198 (33%), Positives = 90/198 (45%), Gaps = 2/198 (1%)
 Frame = +3

Query: 264 VVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLD 443
           +V +TGA  GIG    Y+ +K    LVL       +E     C +     G  +    +D
Sbjct: 38  IVLITGAGHGIGRWTAYEFAKQKSRLVLWDINKHGVEETAAECRK----LGATVHTFVVD 93

Query: 444 LANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTK 623
             NR     + K V +E G + ILVNN G    +  + T  +   +  E+N LG   +TK
Sbjct: 94  CGNREDIYNSVKQVKKEVGDVTILVNNAGTVYPADLLSTKDEEITKTFEINILGHFWITK 153

Query: 624 CVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELAT--YPGITV 797
            +LP MI++  G I+TV S  G    P    YC+SK A  GF   L  EL T    GI  
Sbjct: 154 ALLPSMIKRNHGHIVTVASVCGHGVIPYLIPYCSSKFAAVGFHRALTLELQTLGITGIKT 213

Query: 798 SNVCPGPVKSNIVKNALT 851
           S +CP  V +   KN  T
Sbjct: 214 SCLCPVFVNTGFTKNPST 231


>ref|XP_544970.2| PREDICTED: similar to dehydrogenase/reductase (SDR family) member 8
           [Canis familiaris]
          Length = 300

 Score = 93.2 bits (230), Expect = 5e-19
 Identities = 66/202 (32%), Positives = 89/202 (44%), Gaps = 2/202 (0%)
 Frame = +3

Query: 252 LTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILI 431
           +T  +V +TGA  GIG    Y+ +KL   LVL       +E     C       G  +  
Sbjct: 34  VTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGIEDTAAECRR----LGAKVHA 89

Query: 432 LPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTV 611
             +D +NR     +   V  E G + ILVNN GV   S    T     ++  EVN L   
Sbjct: 90  FVVDCSNREDIYGSATKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHF 149

Query: 612 SLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATY--P 785
             TK  LP M++   G I+TV S  G    P    YC+SK A  GF   L  ELA     
Sbjct: 150 WTTKAFLPVMMKNNHGHIVTVASAAGHTGVPFLLAYCSSKFAAVGFHKALTEELAALERT 209

Query: 786 GITVSNVCPGPVKSNIVKNALT 851
           G+  + +CP  + +  +KNA T
Sbjct: 210 GVKTTCLCPNFINTGFIKNAST 231


>ref|XP_854042.1| PREDICTED: similar to retinol dehydrogenase 8 (all-trans) [Canis
           familiaris]
          Length = 312

 Score = 92.8 bits (229), Expect = 7e-19
 Identities = 65/207 (31%), Positives = 105/207 (50%)
 Frame = +3

Query: 267 VWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLDL 446
           V ++G SSGIG EL  QL+            +++L +        G   G+ + +  LD+
Sbjct: 8   VLISGCSSGIGLELAVQLAHDHRQRYRVVATMRDLGKKGTLETAAGEALGQTLTVAQLDV 67

Query: 447 ANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTKC 626
            +  S  VA      + G++D+LVNN GV         SL   + +++ N+ G V L + 
Sbjct: 68  CSEES--VAQCLSCIQGGEVDVLVNNAGVGLVGPLEGLSLAAMQNVLDTNFFGAVRLVRA 125

Query: 627 VLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGITVSNV 806
           VLP M  +++G I+ ++S MG+     +  Y ASK AL GFF +L  +L  +  I ++ V
Sbjct: 126 VLPGMKRRRKGHIVVISSVMGLQGVVFNEIYAASKFALEGFFESLAVQLLQF-NIFITLV 184

Query: 807 CPGPVKSNIVKNALTEEVTKTLGSDAD 887
            PGPV ++  +  L E+V+ T   D D
Sbjct: 185 EPGPVATDF-EGKLLEQVSTTEFPDTD 210


>ref|XP_852048.1| PREDICTED: similar to follicular lymphoma variant translocation 1
           [Canis familiaris]
          Length = 509

 Score = 89.0 bits (219), Expect = 1e-17
 Identities = 55/172 (31%), Positives = 92/172 (53%), Gaps = 1/172 (0%)
 Frame = +3

Query: 273 VTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLDLAN 452
           VTG SSGIG+ +  +  K G  + L AR   +L + K+   ++ I   + +L + +D++ 
Sbjct: 144 VTGGSSGIGKCIAIECYKQGAFITLVARNEDKLLQAKKEIEKHSINDKQVVLCISVDVSQ 203

Query: 453 RSSH-EVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTKCV 629
             S  E   K   ++ G +D+LVN  G+S      D  +  ++ LM VNYLG+V  ++ V
Sbjct: 204 DYSQVENVIKQAQEKLGPVDMLVNCAGMSLSGKFEDLEVSTFERLMSVNYLGSVYPSRAV 263

Query: 630 LPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYP 785
           +  M E++ G+I+ V+S  G +       Y +SK A+RG    L+ E+  YP
Sbjct: 264 ITTMKERRVGRIVFVSSQAGQLGLFGFTAYSSSKFAIRGLAEALQMEVEIYP 315


  Database: RefSeqCP
    Posted date:  Aug 1, 2006  9:25 PM
  Number of letters in database: 19,266,565
  Number of sequences in database:  33,732
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,905,387
Number of Sequences: 33732
Number of extensions: 1203842
Number of successful extensions: 3400
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 3043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3329
length of database: 19,266,565
effective HSP length: 106
effective length of database: 15,690,973
effective search space used: 5272166928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqSP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= LVRM1_0014_E05
         (1330 letters)

Database: RefSeqSP 
           1040 sequences; 434,620 total letters

Searching...done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_999413.1| 11-beta hydroxysteroid dehydrogenase isoform 1 ...    84   8e-18
Alignment   gi|NP_999184.1| carbonyl reductase/NADP-retinol dehydrogenase [...    73   2e-14
Alignment   gi|NP_999078.1| hydroxysteroid 11-beta dehydrogenase 2 [Sus scr...    65   4e-12
Alignment   gi|NP_998992.1| carbonyl reductase [Sus scrofa]                       60   1e-10
Alignment   gi|NP_999471.1| 17beta-estradiol dehydrogenase [Sus scrofa]           59   3e-10
Alignment   gi|NP_999238.1| 20-beta-hydroxysteroid dehydrogenase [Sus scrofa]     51   7e-08

>ref|NP_999413.1| 11-beta hydroxysteroid dehydrogenase isoform 1 [Sus scrofa]
          Length = 292

 Score = 84.0 bits (206), Expect = 8e-18
 Identities = 60/178 (33%), Positives = 90/178 (50%)
 Frame = +3

Query: 237 RPEWELTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKG 416
           RPE  L    V VTGAS GIG E+ Y L+++G  +V++AR  + L++V    LE G    
Sbjct: 28  RPEM-LRGKKVIVTGASKGIGREMAYHLARMGAHVVVTARSEETLKKVVSHSLELGASSA 86

Query: 417 KDILILPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVN 596
             +     D+            +L   G +D+L+ N         V   + + +  MEVN
Sbjct: 87  HYVAGTMEDMTFAEQFVAKAGKLL---GGLDMLILNHITQAFMTSVYDDIHLVRRSMEVN 143

Query: 597 YLGTVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTE 770
           +L  V L+   LP M+++  G I+ V+S  G +A PL   Y ASK AL GFF+++  E
Sbjct: 144 FLSYVVLSVAALP-MLKQSNGSIVVVSSQAGKMANPLVAPYSASKFALDGFFSSITKE 200


>ref|NP_999184.1| carbonyl reductase/NADP-retinol dehydrogenase [Sus scrofa]
          Length = 260

 Score = 72.8 bits (177), Expect = 2e-14
 Identities = 54/194 (27%), Positives = 93/194 (47%), Gaps = 1/194 (0%)
 Frame = +3

Query: 252 LTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILI 431
           L + V  VT ++ GIG  +  +L++ G  +V+S+R+ + ++R        G+     +  
Sbjct: 12  LENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGL----SVTG 67

Query: 432 LPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQR-SLCVDTSLDVYKELMEVNYLGT 608
               +      E      +   G +DILV+N  V+      +D + +V+ +++ VN   T
Sbjct: 68  TVCHVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKAT 127

Query: 609 VSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPG 788
           V +TK V+P M ++  G ++ V+S       P  G Y  SK AL G    L  ELA    
Sbjct: 128 VLMTKAVVPEMEKRGGGSVLIVSSVGAYHPFPNLGPYNVSKTALLGLTKNLAVELAP-RN 186

Query: 789 ITVSNVCPGPVKSN 830
           I V+ + PG +K+N
Sbjct: 187 IRVNCLAPGLIKTN 200


>ref|NP_999078.1| hydroxysteroid 11-beta dehydrogenase 2 [Sus scrofa]
          Length = 400

 Score = 65.1 bits (157), Expect = 4e-12
 Identities = 57/202 (28%), Positives = 94/202 (46%), Gaps = 10/202 (4%)
 Frame = +3

Query: 267 VWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLDL 446
           V +TG  SG G+    +L  +G +++ +   +      + R   +  LK     +L +DL
Sbjct: 85  VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLK-----LLQMDL 139

Query: 447 ANRSSHEVATKAVLQEFGKIDI-------LVNNGGVSQRSLCVDTSLD---VYKELMEVN 596
                 + A  + + EF K+         LVNN G     L  D  L     Y+  MEVN
Sbjct: 140 T-----KPADISRVLEFTKVHTASTGLWGLVNNAG--HNILVADAELSPVATYRSCMEVN 192

Query: 597 YLGTVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELA 776
           + GT+ +TK +LP ++ +  G+I+TV+S  G +  P    Y  SK A+    ++   EL 
Sbjct: 193 FFGTLEMTKALLP-LLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQ 251

Query: 777 TYPGITVSNVCPGPVKSNIVKN 842
            + G+ VS + P   ++  VKN
Sbjct: 252 PW-GVKVSVIQPACFRTEAVKN 272


>ref|NP_998992.1| carbonyl reductase [Sus scrofa]
          Length = 244

 Score = 60.1 bits (144), Expect = 1e-10
 Identities = 57/211 (27%), Positives = 94/211 (44%), Gaps = 1/211 (0%)
 Frame = +3

Query: 273 VTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLDLAN 452
           VTGA  GIG + V  L   G  +V   R   +L  + + C          I  + +DL +
Sbjct: 12  VTGAGKGIGRDTVKALHVSGARVVAVTRTNGDLVSLSQEC--------PGIEPVCVDLGD 63

Query: 453 RSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTKCVL 632
                 AT+  L   G +D+LVNN  V+     +DT+ +V+     VN      +++ V 
Sbjct: 64  WE----ATERALGGVGPVDLLVNNAAVALMQPFLDTTKEVFDRSFNVNLRSVFQVSQIVA 119

Query: 633 PHMIEK-KQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGITVSNVC 809
             MIE+   G I+ V+S +  +  P    Y ++K A+     ++  EL  +  I V++V 
Sbjct: 120 RSMIERGVPGSIVNVSSMVSHVTYPGLAAYSSTKGAMTMLTKSMAMELGPHK-IRVNSVN 178

Query: 810 PGPVKSNIVKNALTEEVTKTLGSDADQSHKM 902
           P      +V  A+   VT    SD + + K+
Sbjct: 179 P-----TVVLTAMGRSVT----SDPELARKL 200


>ref|NP_999471.1| 17beta-estradiol dehydrogenase [Sus scrofa]
          Length = 737

 Score = 58.9 bits (141), Expect = 3e-10
 Identities = 50/177 (28%), Positives = 79/177 (44%), Gaps = 8/177 (4%)
 Frame = +3

Query: 264 VVWVTGASSGIGEELVYQLSKLGVSLVLS-----ARRVQELERVKRRCLENGILKGKDIL 428
           VV VTGA  G+G       ++ G S+V++      + V +      + +E    KG   +
Sbjct: 11  VVLVTGAGGGLGRTYALAFAERGASVVVNDLGGDMKGVGKGSLAADKVVEEIRRKGGKAV 70

Query: 429 ILPLDLANRSSHEVA---TKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNY 599
                 AN  S E      KA L  FG+ID++VNN G+ +       S + +  +  V+ 
Sbjct: 71  ------ANYDSVEAGEKIVKAALDAFGRIDVVVNNAGILRDRSFSRISDEDWDMIQRVHL 124

Query: 600 LGTVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTE 770
            G+  +T+    HM ++  G+II  +S  GI        Y A+K  L G  N+L  E
Sbjct: 125 RGSFMVTRAAWDHMKKQNFGRIIMTSSAAGIYGNFGQANYSAAKLGLLGLSNSLAVE 181


>ref|NP_999238.1| 20-beta-hydroxysteroid dehydrogenase [Sus scrofa]
          Length = 289

 Score = 50.8 bits (120), Expect = 7e-08
 Identities = 43/147 (29%), Positives = 75/147 (51%), Gaps = 2/147 (1%)
 Frame = +3

Query: 264 VVWVTGASSGIGEELVYQLSK-LGVSLVLSARRVQELERVKRRCLENGILKGKDILILPL 440
           V  VTGA+ GIG  +V  L +     +VL+AR V   +   ++    G+          L
Sbjct: 7   VALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPR----FHQL 62

Query: 441 DLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKEL-MEVNYLGTVSL 617
           D+ +  S       + +E+G +D+LVNN  ++ + L   T   +  EL M+ N++GT ++
Sbjct: 63  DIIDLQSIRALCDFLRKEYGGLDVLVNNAAIAFQ-LDNPTPFHIQAELTMKTNFMGTRNV 121

Query: 618 TKCVLPHMIEKKQGKIITVNSFMGIIA 698
              +LP  + K QG+++ V+S  G+ A
Sbjct: 122 CTELLP--LIKPQGRVVNVSSTEGVRA 146


  Database: RefSeqSP
    Posted date:  Aug 1, 2006  7:14 PM
  Number of letters in database: 434,620
  Number of sequences in database:  1040
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,171,795
Number of Sequences: 1040
Number of extensions: 28631
Number of successful extensions: 105
Number of sequences better than 1.0e-05: 6
Number of HSP's better than  0.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 434,620
effective HSP length: 80
effective length of database: 351,420
effective search space used: 127214040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqHP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= LVRM1_0014_E05
         (1330 letters)

Database: RefSeqHP 
           39,411 sequences; 17,774,539 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_057113.1| dehydrogenase/reductase (SDR family) member 7 [...   548   e-156
Alignment   gi|NP_056325.2| hypothetical protein LOC25979 [Homo sapiens]         145   1e-34
Alignment   gi|XP_943583.1| PREDICTED: similar to CG7601-PA [Homo sapiens]       106   5e-23
Alignment   gi|XP_113912.3| PREDICTED: similar to CG7601-PA [Homo sapiens]       106   5e-23
Alignment   gi|NP_057329.1| dehydrogenase/reductase (SDR family) member 8 [...   100   2e-21
Alignment   gi|NP_005516.1| 11-beta-hydroxysteroid dehydrogenase 1 [Homo sa...    93   6e-19
Alignment   gi|NP_861420.1| 11-beta-hydroxysteroid dehydrogenase 1 [Homo sa...    93   6e-19
Alignment   gi|NP_056540.1| retinol dehydrogenase 8 (all-trans) [Homo sapiens]    92   1e-18
Alignment   gi|NP_835236.1| hydroxysteroid (17-beta) dehydrogenase 13 [Homo...    92   1e-18
Alignment   gi|NP_941995.1| short-chain dehydrogenase/reductase 10 isoform ...    90   4e-18

>ref|NP_057113.1| dehydrogenase/reductase (SDR family) member 7 [Homo sapiens]
          Length = 339

 Score =  548 bits (1411), Expect = e-156
 Identities = 262/311 (84%), Positives = 290/311 (93%)
 Frame = +3

Query: 195  DGDLTLLWAEWQGRRPEWELTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELE 374
            DGDLTLLWAEWQGRRPEWELTDMVVWVTGASSGIGEEL YQLSKLGVSLVLSARRV ELE
Sbjct: 29   DGDLTLLWAEWQGRRPEWELTDMVVWVTGASSGIGEELAYQLSKLGVSLVLSARRVHELE 88

Query: 375  RVKRRCLENGILKGKDILILPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCV 554
            RVKRRCLENG LK KDIL+LPLDL +  SHE ATKAVLQEFG+IDILVNNGG+SQRSLC+
Sbjct: 89   RVKRRCLENGNLKEKDILVLPLDLTDTGSHEAATKAVLQEFGRIDILVNNGGMSQRSLCM 148

Query: 555  DTSLDVYKELMEVNYLGTVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKH 734
            DTSLDVY++L+E+NYLGTVSLTKCVLPHMIE+KQGKI+TVNS +GII+ PLS GYCASKH
Sbjct: 149  DTSLDVYRKLIELNYLGTVSLTKCVLPHMIERKQGKIVTVNSILGIISVPLSIGYCASKH 208

Query: 735  ALRGFFNTLRTELATYPGITVSNVCPGPVKSNIVKNALTEEVTKTLGSDADQSHKMATSR 914
            ALRGFFN LRTELATYPGI VSN+CPGPV+SNIV+N+L  EVTKT+G++ DQSHKM TSR
Sbjct: 209  ALRGFFNGLRTELATYPGIIVSNICPGPVQSNIVENSLAGEVTKTIGNNGDQSHKMTTSR 268

Query: 915  CARLMLIAMANDLKEVWIAEQPFLSMAYLWQYIPTWAWWLTSKIGKKRIENFKSGVDADS 1094
            C RLMLI+MANDLKEVWI+EQPFL + YLWQY+PTWAWW+T+K+GKKRIENFKSGVDADS
Sbjct: 269  CVRLMLISMANDLKEVWISEQPFLLVTYLWQYMPTWAWWITNKMGKKRIENFKSGVDADS 328

Query: 1095 SYFKIWKKKHD 1127
            SYFKI+K KHD
Sbjct: 329  SYFKIFKTKHD 339


>ref|NP_056325.2| hypothetical protein LOC25979 [Homo sapiens]
          Length = 325

 Score =  145 bits (365), Expect = 1e-34
 Identities = 86/243 (35%), Positives = 135/243 (55%), Gaps = 2/243 (0%)
 Frame = +3

Query: 252 LTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDI-- 425
           L + VV +TGA+SG+G+E        G  LVL  R    LE + R    +   K +    
Sbjct: 50  LRNAVVVITGATSGLGKECAKVFYAAGAKLVLCGRNGGALEELIRELTASHATKVQTHKP 109

Query: 426 LILPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLG 605
            ++  DL +  +   A   +LQ FG +DILVNN G+S R   +DT++DV K +ME NY G
Sbjct: 110 YLVTFDLTDSGAIVAAAAEILQCFGYVDILVNNAGISYRGTIMDTTVDVDKRVMETNYFG 169

Query: 606 TVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYP 785
            V+LTK +LP MI+++QG I+ ++S  G ++ P    Y ASKHA + FF+ LR E+  Y 
Sbjct: 170 PVALTKALLPSMIKRRQGHIVAISSIQGKMSIPFRSAYAASKHATQAFFDCLRAEMEQYE 229

Query: 786 GITVSNVCPGPVKSNIVKNALTEEVTKTLGSDADQSHKMATSRCARLMLIAMANDLKEVW 965
            I V+ + PG + +N+  NA+T + ++    D   +   +    A+ +L A+    K+V 
Sbjct: 230 -IEVTVISPGYIHTNLSVNAITADGSRYGVMDTTTAQGRSPVEVAQDVLAAVGKKKKDVI 288

Query: 966 IAE 974
           +A+
Sbjct: 289 LAD 291


>ref|XP_943583.1| PREDICTED: similar to CG7601-PA [Homo sapiens]
          Length = 308

 Score =  106 bits (264), Expect = 5e-23
 Identities = 66/189 (34%), Positives = 101/189 (53%), Gaps = 1/189 (0%)
 Frame = +3

Query: 264 VVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGI-LKGKDILILPL 440
           VV +T A SG+G+E        G  LVL  +  + LE +    +      K     ++ L
Sbjct: 36  VVVITDAISGLGKECARVFHTGGARLVLCGKNWERLENLYDALISVADPSKTFTPKLVLL 95

Query: 441 DLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLT 620
           DL++ S      K VL  +G +DIL+NN  V  +      SL++ K++M+ NY G ++LT
Sbjct: 96  DLSDISCVPDVAKEVLDCYGCVDILINNASVKVKGPAHKISLELDKKIMDANYFGPITLT 155

Query: 621 KCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGITVS 800
           K +LP+MI ++ G+I+ VN+  G    P    Y ASKHA  GFF+ LR E+  Y  + +S
Sbjct: 156 KALLPNMISRRTGQIVLVNNIQGKFGIPFRTTYAASKHAALGFFDCLRAEVEEY-DVVIS 214

Query: 801 NVCPGPVKS 827
            V P  ++S
Sbjct: 215 TVSPTFIRS 223


>ref|XP_113912.3| PREDICTED: similar to CG7601-PA [Homo sapiens]
          Length = 308

 Score =  106 bits (264), Expect = 5e-23
 Identities = 66/189 (34%), Positives = 101/189 (53%), Gaps = 1/189 (0%)
 Frame = +3

Query: 264 VVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGI-LKGKDILILPL 440
           VV +T A SG+G+E        G  LVL  +  + LE +    +      K     ++ L
Sbjct: 36  VVVITDAISGLGKECARVFHTGGARLVLCGKNWERLENLYDALISVADPSKTFTPKLVLL 95

Query: 441 DLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLT 620
           DL++ S      K VL  +G +DIL+NN  V  +      SL++ K++M+ NY G ++LT
Sbjct: 96  DLSDISCVPDVAKEVLDCYGCVDILINNASVKVKGPAHKISLELDKKIMDANYFGPITLT 155

Query: 621 KCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGITVS 800
           K +LP+MI ++ G+I+ VN+  G    P    Y ASKHA  GFF+ LR E+  Y  + +S
Sbjct: 156 KALLPNMISRRTGQIVLVNNIQGKFGIPFRTTYAASKHAALGFFDCLRAEVEEY-DVVIS 214

Query: 801 NVCPGPVKS 827
            V P  ++S
Sbjct: 215 TVSPTFIRS 223


>ref|NP_057329.1| dehydrogenase/reductase (SDR family) member 8 [Homo sapiens]
          Length = 300

 Score =  100 bits (250), Expect = 2e-21
 Identities = 70/202 (34%), Positives = 94/202 (46%), Gaps = 2/202 (0%)
 Frame = +3

Query: 252 LTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILI 431
           +T  +V +TGA  GIG    Y+ +KL   LVL       LE    +C   G+  G  +  
Sbjct: 34  VTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKC--KGL--GAKVHT 89

Query: 432 LPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTV 611
             +D +NR     + K V  E G + ILVNN GV   S    T     ++  EVN L   
Sbjct: 90  FVVDCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHF 149

Query: 612 SLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELAT--YP 785
             TK  LP M +   G I+TV S  G ++ P    YC+SK A  GF  TL  ELA     
Sbjct: 150 WTTKAFLPAMTKNNHGHIVTVASAAGHVSVPFLLAYCSSKFAAVGFHKTLTDELAALQIT 209

Query: 786 GITVSNVCPGPVKSNIVKNALT 851
           G+  + +CP  V +  +KN  T
Sbjct: 210 GVKTTCLCPNFVNTGFIKNPST 231


>ref|NP_005516.1| 11-beta-hydroxysteroid dehydrogenase 1 [Homo sapiens]
          Length = 292

 Score = 92.8 bits (229), Expect = 6e-19
 Identities = 65/178 (36%), Positives = 94/178 (52%)
 Frame = +3

Query: 237 RPEWELTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKG 416
           RPE  L    V VTGAS GIG E+ Y L+K+G  +V++AR  + L++V   CLE G    
Sbjct: 28  RPEM-LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASA 86

Query: 417 KDILILPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVN 596
             I     D+   +   VA    L   G +D+L+ N   +         +   ++ MEVN
Sbjct: 87  HYIAGTMEDM-TFAEQFVAQAGKL--MGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVN 143

Query: 597 YLGTVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTE 770
           +L  V LT   LP M+++  G I+ V+S  G +A P+   Y ASK AL GFF+++R E
Sbjct: 144 FLSYVVLTVAALP-MLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKE 200


>ref|NP_861420.1| 11-beta-hydroxysteroid dehydrogenase 1 [Homo sapiens]
          Length = 292

 Score = 92.8 bits (229), Expect = 6e-19
 Identities = 65/178 (36%), Positives = 94/178 (52%)
 Frame = +3

Query: 237 RPEWELTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKG 416
           RPE  L    V VTGAS GIG E+ Y L+K+G  +V++AR  + L++V   CLE G    
Sbjct: 28  RPEM-LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASA 86

Query: 417 KDILILPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVN 596
             I     D+   +   VA    L   G +D+L+ N   +         +   ++ MEVN
Sbjct: 87  HYIAGTMEDM-TFAEQFVAQAGKL--MGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVN 143

Query: 597 YLGTVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTE 770
           +L  V LT   LP M+++  G I+ V+S  G +A P+   Y ASK AL GFF+++R E
Sbjct: 144 FLSYVVLTVAALP-MLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKE 200


>ref|NP_056540.1| retinol dehydrogenase 8 (all-trans) [Homo sapiens]
          Length = 311

 Score = 92.0 bits (227), Expect = 1e-18
 Identities = 66/214 (30%), Positives = 106/214 (49%), Gaps = 4/214 (1%)
 Frame = +3

Query: 267 VWVTGASSGIGEELVYQLS---KLGVSLVLSARRVQELERVKRRCLENGILKGKDILILP 437
           V ++G SSGIG EL  QL+   K    +V + R + + E ++      G   G+ + +  
Sbjct: 8   VLISGCSSGIGLELAVQLAHDPKKRYQVVATMRDLGKKETLEAAA---GEALGQTLTVAQ 64

Query: 438 LDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSL 617
           LD+ +  S       +    G++D+LVNN G+         SL   + + + N+ G V L
Sbjct: 65  LDVCSDESVAQCLSCIQ---GEVDVLVNNAGMGLVGPLEGLSLAAMQNVFDTNFFGAVRL 121

Query: 618 TKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGITV 797
            K VLP M  ++QG I+ ++S MG+     +  Y ASK AL GFF +L  +L  +  I +
Sbjct: 122 VKAVLPGMKRRRQGHIVVISSVMGLQGVIFNDVYAASKFALEGFFESLAIQLLQF-NIFI 180

Query: 798 SNVCPGPVKSNIVKNALTE-EVTKTLGSDADQSH 896
           S V PGPV +      L +  + +  G+D +  H
Sbjct: 181 SLVEPGPVVTEFEGKLLAQVSMAEFPGTDPETLH 214


>ref|NP_835236.1| hydroxysteroid (17-beta) dehydrogenase 13 [Homo sapiens]
          Length = 300

 Score = 92.0 bits (227), Expect = 1e-18
 Identities = 64/198 (32%), Positives = 93/198 (46%), Gaps = 2/198 (1%)
 Frame = +3

Query: 264 VVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLD 443
           +V +TGA  GIG +  Y+ +K    LVL     + +E     C + G+     ++    D
Sbjct: 38  IVLITGAGHGIGRQTTYEFAKRQSILVLWDINKRGVEETAAECRKLGVTAHAYVV----D 93

Query: 444 LANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTK 623
            +NR     +   V +E G + I+VNN G    +  + T  +   +  EVN LG   +TK
Sbjct: 94  CSNREEIYRSLNQVKKEVGDVTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITK 153

Query: 624 CVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATY--PGITV 797
            +LP M+E+  G I+TV S  G    P    YC+SK A  GF   L +EL      GI  
Sbjct: 154 ALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVGFHRGLTSELQALGKTGIKT 213

Query: 798 SNVCPGPVKSNIVKNALT 851
           S +CP  V +   KN  T
Sbjct: 214 SCLCPVFVNTGFTKNPST 231


>ref|NP_941995.1| short-chain dehydrogenase/reductase 10 isoform b [Homo sapiens]
          Length = 286

 Score = 90.1 bits (222), Expect = 4e-18
 Identities = 60/171 (35%), Positives = 92/171 (53%), Gaps = 2/171 (1%)
 Frame = +3

Query: 267 VWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLDL 446
           V +TGA++G+GEEL Y  ++LG  LVL+A     L++V   C + G  K   +  +  D+
Sbjct: 32  VLLTGANAGVGEELAYHYARLGSHLVLTAHTEALLQKVVGNCRKLGAPK---VFYIAADM 88

Query: 447 ANRSSHEVATKAVLQEFGKIDILVNN--GGVSQRSLCVDTSLDVYKELMEVNYLGTVSLT 620
           A+  + E   +  L + G +D LV N  GG    +     S    + LM+VN++  V LT
Sbjct: 89  ASPEAPESVVQFALDKLGGLDYLVLNHIGGAPAGTRA--RSPQATRWLMQVNFVSYVQLT 146

Query: 621 KCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTEL 773
              LP + + K G ++ V+S +G +    S  Y A+K AL GFF +LR EL
Sbjct: 147 SRALPSLTDSK-GSLVVVSSLLGRVPTSFSTPYSAAKFALDGFFGSLRREL 196


  Database: RefSeqHP
    Posted date:  Aug 2, 2006 12:57 AM
  Number of letters in database: 17,774,539
  Number of sequences in database:  39,411
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,977,188
Number of Sequences: 39411
Number of extensions: 1188367
Number of successful extensions: 3437
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 3058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3374
length of database: 17,774,539
effective HSP length: 105
effective length of database: 13,636,384
effective search space used: 4595461408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqMP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= LVRM1_0014_E05
         (1330 letters)

Database: RefSeqMP 
           45,328 sequences; 21,768,885 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_079798.1| retinal short-chain dehydrogenase/reductase 4 [...   429   e-120
Alignment   gi|NP_663403.1| hypothetical protein LOC216820 [Mus musculus]        151   2e-36
Alignment   gi|NP_032314.1| hydroxysteroid 11-beta dehydrogenase 1 [Mus mus...    99   8e-21
Alignment   gi|NP_001025461.1| retinol dehydrogenase 8 [Mus musculus]             98   2e-20
Alignment   gi|NP_001013031.1| hypothetical protein LOC68460 [Mus musculus]       97   4e-20
Alignment   gi|NP_444492.1| dehydrogenase/reductase (SDR family) member 8 [...    95   1e-19
Alignment   gi|NP_932147.1| alcohol dehydrogenase PAN1B-like [Mus musculus]       91   3e-18
Alignment   gi|NP_663399.1| cis-retinol/3alpha hydroxysterol short-chain de...    89   1e-17
Alignment   gi|XP_203753.2| PREDICTED: follicular lymphoma variant transloc...    89   1e-17
Alignment   gi|XP_915916.1| PREDICTED: similar to 3-ketodihydrosphingosine ...    89   1e-17

>ref|NP_079798.1| retinal short-chain dehydrogenase/reductase 4 [Mus musculus]
          Length = 288

 Score =  429 bits (1103), Expect = e-120
 Identities = 214/289 (74%), Positives = 245/289 (84%)
 Frame = +3

Query: 261  MVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPL 440
            MVVWVTGASSGIGEEL +QLSKLGVSLVLSARR QELERVKRRCLENG LK KDIL+LPL
Sbjct: 1    MVVWVTGASSGIGEELAFQLSKLGVSLVLSARRAQELERVKRRCLENGNLKEKDILVLPL 60

Query: 441  DLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLT 620
            DL + SSHE ATKAVLQEFGKIDILVNNGG SQRSL ++T+LDV+KEL+ +NY+GTVSLT
Sbjct: 61   DLTDTSSHEAATKAVLQEFGKIDILVNNGGRSQRSLVLETNLDVFKELINLNYIGTVSLT 120

Query: 621  KCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGITVS 800
            KCVLPHMIE+KQGKI+TVNS  GI +  LS GYCASKHALRGFFN L +EL  YPGIT  
Sbjct: 121  KCVLPHMIERKQGKIVTVNSIAGIASVSLSSGYCASKHALRGFFNALHSELGQYPGITFC 180

Query: 801  NVCPGPVKSNIVKNALTEEVTKTLGSDADQSHKMATSRCARLMLIAMANDLKEVWIAEQP 980
            NV PGPV+S+IVKNA TEEVTK++ ++ DQS+KM TSRC RLMLI+MANDLKEVWI++ P
Sbjct: 181  NVYPGPVQSDIVKNAFTEEVTKSMRNNIDQSYKMPTSRCVRLMLISMANDLKEVWISDHP 240

Query: 981  FLSMAYLWQYIPTWAWWLTSKIGKKRIENFKSGVDADSSYFKIWKKKHD 1127
             L  AY+WQY+PTWA WL  K+GK+RI+NFK+ +D D  Y K  K K D
Sbjct: 241  VLLGAYIWQYMPTWAAWLNCKLGKERIQNFKNNLDPDLPY-KFLKAKKD 288


>ref|NP_663403.1| hypothetical protein LOC216820 [Mus musculus]
          Length = 323

 Score =  151 bits (381), Expect = 2e-36
 Identities = 84/241 (34%), Positives = 135/241 (56%)
 Frame = +3

Query: 252 LTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILI 431
           L + VV VTGA+SG+G E        G  LVL  R V+ LE + R    +   +     +
Sbjct: 50  LRNAVVVVTGATSGLGRECAKVFHAAGAKLVLCGRNVKALEELSRELAGSSQGQTHQPFV 109

Query: 432 LPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTV 611
           +  DLA+  +   A   +LQ FG +D+L+NN G+S R    DT +DV +++ME+NY G V
Sbjct: 110 VTFDLADPGTIAAAAAEILQCFGYVDVLINNAGISYRGTISDTIVDVDRKVMEINYFGPV 169

Query: 612 SLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGI 791
           +LTK +LP M+E+KQG I+ ++S  G I+ P    Y ASKHA + FF+ LR E+     I
Sbjct: 170 ALTKALLPSMVERKQGHIVAISSIQGKISIPFRSAYSASKHATQAFFDCLRAEMEE-ANI 228

Query: 792 TVSNVCPGPVKSNIVKNALTEEVTKTLGSDADQSHKMATSRCARLMLIAMANDLKEVWIA 971
            V+ + PG + +N+  NA+T + ++    D + +   + +  A+ +  A+    K+V + 
Sbjct: 229 KVTVISPGYIHTNLSVNAVTADGSRYGALDKNTAQGRSAAEVAQDVFDAVGKKKKDVLLT 288

Query: 972 E 974
           +
Sbjct: 289 D 289


>ref|NP_032314.1| hydroxysteroid 11-beta dehydrogenase 1 [Mus musculus]
          Length = 292

 Score = 99.4 bits (246), Expect = 8e-21
 Identities = 68/180 (37%), Positives = 99/180 (55%), Gaps = 1/180 (0%)
 Frame = +3

Query: 237 RPEWELTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKG 416
           RPE  L    V VTGAS GIG E+ Y LSK+G  +VL+AR  + L++V  RCLE G    
Sbjct: 28  RPEM-LQGKKVIVTGASKGIGREMAYHLSKMGAHVVLTARSEEGLQKVVSRCLELGAASA 86

Query: 417 KDILILPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCV-DTSLDVYKELMEV 593
             I     D+       V    ++   G +D+L+ N  ++Q SL +    +   + +MEV
Sbjct: 87  HYIAGTMEDMTFAEQFIVKAGKLM---GGLDMLILN-HITQTSLSLFHDDIHSVRRVMEV 142

Query: 594 NYLGTVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTEL 773
           N+L  V ++   LP M+++  G I  ++S  G +  P+   Y ASK AL GFF+T+RTEL
Sbjct: 143 NFLSYVVMSTAALP-MLKQSNGSIAVISSLAGKMTQPMIAPYSASKFALDGFFSTIRTEL 201


>ref|NP_001025461.1| retinol dehydrogenase 8 [Mus musculus]
          Length = 317

 Score = 98.2 bits (243), Expect = 2e-20
 Identities = 71/210 (33%), Positives = 107/210 (50%), Gaps = 3/210 (1%)
 Frame = +3

Query: 267 VWVTGASSGIGEELVYQLS---KLGVSLVLSARRVQELERVKRRCLENGILKGKDILILP 437
           V ++G SSGIG EL  QL+   +    +V + R + + E ++      G   GK + ++ 
Sbjct: 8   VLISGCSSGIGLELALQLAHDPRQRYQVVATMRDLGKKEPLEAAA---GEALGKTLSVVQ 64

Query: 438 LDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSL 617
           LD+ N  S       +  E G++D+LVNN GV         SL   + +   N+ G V L
Sbjct: 65  LDVCNDESVTDCLSHI--EGGQVDVLVNNAGVGLVGPLEGLSLATMQSVFNTNFFGAVRL 122

Query: 618 TKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGITV 797
            K VLP M  ++QG I+ V+S MG+     +  Y ASK AL GFF +L  +L  +  I +
Sbjct: 123 VKAVLPGMKRRRQGHIVVVSSVMGLQGVMFNDVYAASKFALEGFFESLAIQLRQF-NIFI 181

Query: 798 SNVCPGPVKSNIVKNALTEEVTKTLGSDAD 887
           S V PGPV ++  +  L  +V+K    D D
Sbjct: 182 SMVEPGPVTTDF-EGKLLAQVSKAEFPDTD 210


>ref|NP_001013031.1| hypothetical protein LOC68460 [Mus musculus]
          Length = 237

 Score = 97.1 bits (240), Expect = 4e-20
 Identities = 50/130 (38%), Positives = 78/130 (60%)
 Frame = +3

Query: 438 LDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSL 617
           +DL++ S  +   K VL  +G +DIL+NN  V  +      SL++ K++M+ NY G ++L
Sbjct: 24  VDLSDISCVQDVAKEVLDCYGCVDILINNASVKVKGPAHKISLELDKKIMDANYFGPITL 83

Query: 618 TKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGITV 797
           TK +LP+MI ++ G+I+ VN+       P    Y ASKHA+ GFF+ LR E+  Y  + V
Sbjct: 84  TKVLLPNMISRRTGQIVLVNNIQAKFGIPFRTAYAASKHAVMGFFDCLRAEVEEY-DVVV 142

Query: 798 SNVCPGPVKS 827
           S V P  ++S
Sbjct: 143 STVSPTYIRS 152


>ref|NP_444492.1| dehydrogenase/reductase (SDR family) member 8 [Mus musculus]
          Length = 298

 Score = 95.1 bits (235), Expect = 1e-19
 Identities = 65/198 (32%), Positives = 89/198 (44%), Gaps = 2/198 (1%)
 Frame = +3

Query: 264 VVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLD 443
           +V +TGA  GIG    Y+ +KL   LVL       +E    +C + G      ++    D
Sbjct: 38  IVLITGAGHGIGRLTAYEFAKLNTKLVLWDINKNGIEETAAKCRKLGAQAHPFVV----D 93

Query: 444 LANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTK 623
            + R     A K V +E G + ILVNN GV   +    T     ++  EVN L     TK
Sbjct: 94  CSQREEIYSAAKKVKEEVGDVSILVNNAGVVYTADLFATQDPQIEKTFEVNVLAHFWTTK 153

Query: 624 CVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATY--PGITV 797
             LP M++   G I+TV S  G    P    YC+SK A  GF   L  ELA     G+  
Sbjct: 154 AFLPVMMKNNHGHIVTVASAAGHTVVPFLLAYCSSKFAAVGFHRALTDELAALGRTGVRT 213

Query: 798 SNVCPGPVKSNIVKNALT 851
           S +CP  + +  +KN  T
Sbjct: 214 SCLCPNFINTGFIKNPST 231


>ref|NP_932147.1| alcohol dehydrogenase PAN1B-like [Mus musculus]
          Length = 304

 Score = 90.9 bits (224), Expect = 3e-18
 Identities = 67/217 (30%), Positives = 100/217 (46%), Gaps = 10/217 (4%)
 Frame = +3

Query: 252 LTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILI 431
           +T   V +TGA  GIG    Y+ +K    LVL     + +E    +C + G +    + +
Sbjct: 34  VTGQTVLITGAGHGIGRLTAYEFAKQKSRLVLWDINKRGVEETADKCRKLGAV----VHV 89

Query: 432 LPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTV 611
             +D +NR+    +   V +E G ++I+VNN G    +  +    +   +  EVN LG  
Sbjct: 90  FVVDCSNRAEIYNSVDQVKREVGDVEIVVNNAGAIYPADLLSAKDEEITKTFEVNILGHF 149

Query: 612 SLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATY--P 785
            + K +LP M+ +  G I+TV S  G    P    YC+SK A  GF   L  EL T    
Sbjct: 150 WIIKALLPSMLRRNSGHIVTVASVCGHGVIPYLIPYCSSKFAAVGFHRALTAELDTLGKT 209

Query: 786 GITVSNVCPGPVKSNIVKNALT--------EEVTKTL 872
           GI  S +CP  V +   KN  T        EEV ++L
Sbjct: 210 GIKTSCLCPVFVNTGFTKNPSTRLWPVLEPEEVARSL 246


>ref|NP_663399.1| cis-retinol/3alpha hydroxysterol short-chain dehydrogenase-like
           [Mus musculus]
          Length = 318

 Score = 89.0 bits (219), Expect = 1e-17
 Identities = 59/191 (30%), Positives = 103/191 (53%), Gaps = 3/191 (1%)
 Frame = +3

Query: 252 LTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILI 431
           L D  V++TG  SG G  L  QL + G+ ++ + R+ +  E ++R+  E        +  
Sbjct: 27  LQDKYVFITGCGSGFGNLLARQLDRRGMRVLAACRKEEGAEELRRKTSER-------LET 79

Query: 432 LPLDLANRSSHEVATKAVLQEFGKIDI--LVNNGGVSQRSLCVD-TSLDVYKELMEVNYL 602
           + LD+    S   AT+ V +  G   +  LVNN G+S  S   +      +  +++VN L
Sbjct: 80  VILDVTKTESIVAATQWVKERVGNRGLWGLVNNAGISVPSGPNEWMKKQDFASVLDVNLL 139

Query: 603 GTVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATY 782
           G + +T  +LP ++ K +G+++ V+S +G ++   SGGYC SK+ +  F ++LR EL  Y
Sbjct: 140 GLIEVTLSMLP-LVRKARGRVVNVSSILGRVSLGGSGGYCISKYGIEAFSDSLRREL-RY 197

Query: 783 PGITVSNVCPG 815
            G+ V+ + PG
Sbjct: 198 FGVKVAIIEPG 208


>ref|XP_203753.2| PREDICTED: follicular lymphoma variant translocation 1 isoform 1
           [Mus musculus]
          Length = 332

 Score = 88.6 bits (218), Expect = 1e-17
 Identities = 68/263 (25%), Positives = 123/263 (46%), Gaps = 31/263 (11%)
 Frame = +3

Query: 267 VWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLDL 446
           V VTG SSGIG+ +  +  K G  + L AR   +L + K+   ++ I   + +L + +D+
Sbjct: 35  VVVTGGSSGIGKCIAIECYKQGAFITLVARNEDKLLQAKKDIEKHSINDKQVVLCISVDV 94

Query: 447 ANRSSH-EVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTK 623
           +   +  E   K   ++ G +D+LVN  G S      +  +  +++LM +NYLG+V  ++
Sbjct: 95  SQDYNQVENVIKQAQEKLGPVDMLVNCAGTSMSGKFEELEVSSFEKLMSINYLGSVYPSR 154

Query: 624 CVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATY------- 782
            V+  M E++ G+I+ V+S  G +       Y +SK A+RG    L+ E+  Y       
Sbjct: 155 AVITTMKERRVGRIVFVSSQAGQLGLFGFTAYSSSKFAIRGLAEALQMEVKPYNVYVTVA 214

Query: 783 -------PGITVSN---------------VC-PGPVKSNIVKNALTEEVTKTLGSDADQS 893
                  PG+   N               +C P  V   IVK+A+      ++GSD    
Sbjct: 215 YPPDTDTPGLAEENKTKPLETRLISETTAICKPEQVAKQIVKDAIQGNFNSSIGSD---G 271

Query: 894 HKMATSRCARLMLIAMANDLKEV 962
           + +++  C    + ++   L++V
Sbjct: 272 YMLSSLTCGMAPVTSITEGLQQV 294


>ref|XP_915916.1| PREDICTED: similar to 3-ketodihydrosphingosine reductase precursor
           (3-dehydrosphinganine reductase) (KDS reductase)
           (Follicular variant translocation protein 1) (FVT-1)
           isoform 4 [Mus musculus]
          Length = 332

 Score = 88.6 bits (218), Expect = 1e-17
 Identities = 68/263 (25%), Positives = 123/263 (46%), Gaps = 31/263 (11%)
 Frame = +3

Query: 267 VWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLDL 446
           V VTG SSGIG+ +  +  K G  + L AR   +L + K+   ++ I   + +L + +D+
Sbjct: 35  VVVTGGSSGIGKCIAIECYKQGAFITLVARNEDKLLQAKKDIEKHSINDKQVVLCISVDV 94

Query: 447 ANRSSH-EVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTK 623
           +   +  E   K   ++ G +D+LVN  G S      +  +  +++LM +NYLG+V  ++
Sbjct: 95  SQDYNQVENVIKQAQEKLGPVDMLVNCAGTSMSGKFEELEVSSFEKLMSINYLGSVYPSR 154

Query: 624 CVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATY------- 782
            V+  M E++ G+I+ V+S  G +       Y +SK A+RG    L+ E+  Y       
Sbjct: 155 AVITTMKERRVGRIVFVSSQAGQLGLFGFTAYSSSKFAIRGLAEALQMEVKPYNVYVTVA 214

Query: 783 -------PGITVSN---------------VC-PGPVKSNIVKNALTEEVTKTLGSDADQS 893
                  PG+   N               +C P  V   IVK+A+      ++GSD    
Sbjct: 215 YPPDTDTPGLAEENKTKPLETRLISETTAICKPEQVAKQIVKDAIQGNFNSSIGSD---G 271

Query: 894 HKMATSRCARLMLIAMANDLKEV 962
           + +++  C    + ++   L++V
Sbjct: 272 YMLSSLTCGMAPVTSITEGLQQV 294


  Database: RefSeqMP
    Posted date:  Aug 2, 2006 12:58 AM
  Number of letters in database: 21,768,885
  Number of sequences in database:  45,328
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,624,899
Number of Sequences: 45328
Number of extensions: 1397853
Number of successful extensions: 3994
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 3505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3924
length of database: 21,768,885
effective HSP length: 107
effective length of database: 16,918,789
effective search space used: 5667794315
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)