Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LVRM1_0014_E05
(1330 letters)
Database: RefSeqBP
33,508 sequences; 16,112,626 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_591832.2| PREDICTED: similar to Dehydrogenase/reductase S... 552 e-157
Alignment gi|NP_001030420.1| hypothetical protein LOC522283 [Bos taurus] 146 4e-35
Alignment gi|XP_589371.1| PREDICTED: similar to CG7601-PA [Bos taurus] 105 6e-23
Alignment gi|XP_872682.1| PREDICTED: similar to Dehydrogenase/reductase S... 94 3e-19
Alignment gi|XP_581861.2| PREDICTED: similar to follicular lymphoma varia... 93 4e-19
Alignment gi|NP_776592.1| retinol dehydrogenase 8 (all-trans) [Bos taurus] 92 9e-19
Alignment gi|NP_996852.1| 11-beta-hydroxysteroid dehydrogenase type 3 [Bo... 89 8e-18
Alignment gi|XP_879080.1| PREDICTED: similar to microsomal NAD+-dependent... 85 1e-16
Alignment gi|XP_878985.1| PREDICTED: similar to microsomal NAD+-dependent... 85 1e-16
Alignment gi|XP_878888.1| PREDICTED: similar to microsomal NAD+-dependent... 85 1e-16
>ref|XP_591832.2| PREDICTED: similar to Dehydrogenase/reductase SDR family member 7
precursor (Retinal short-chain dehydrogenase/reductase 4)
(retSDR4) [Bos taurus]
Length = 339
Score = 552 bits (1422), Expect = e-157
Identities = 272/339 (80%), Positives = 296/339 (87%)
Frame = +3
Query: 111 MSWEXXXXXXXXXXXXXXXXXXXXXXXXDGDLTLLWAEWQGRRPEWELTDMVVWVTGASS 290
MSWE D DLTLLWAEWQGRRPEWELTDMVVWVTGASS
Sbjct: 1 MSWELLLWLLALCALLALVVQLLRFLRADADLTLLWAEWQGRRPEWELTDMVVWVTGASS 60
Query: 291 GIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLDLANRSSHEV 470
GIGEEL YQLSKLGVSLVLSARR+ ELERVKR+CLENG LK KDILILPLDL +RSSHE+
Sbjct: 61 GIGEELAYQLSKLGVSLVLSARRMHELERVKRKCLENGNLKEKDILILPLDLTDRSSHEM 120
Query: 471 ATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTKCVLPHMIEK 650
ATKAVLQEFG+IDILVNNGGVSQR+LCVDTSLDV+KEL+E+NYLGTVSLTKCVLPHMIE+
Sbjct: 121 ATKAVLQEFGRIDILVNNGGVSQRALCVDTSLDVFKELIELNYLGTVSLTKCVLPHMIER 180
Query: 651 KQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGITVSNVCPGPVKSN 830
KQGKI+TVNS +GIIAAPLS GYCASKHALRGFFNTLR+ELATYPGIT+SN+CPGPV+SN
Sbjct: 181 KQGKIVTVNSMVGIIAAPLSTGYCASKHALRGFFNTLRSELATYPGITISNICPGPVQSN 240
Query: 831 IVKNALTEEVTKTLGSDADQSHKMATSRCARLMLIAMANDLKEVWIAEQPFLSMAYLWQY 1010
IVKNALTEEVTK GS ADQS+KMATSRC RLML+AMANDLKEVWI++QPFL M YLWQY
Sbjct: 241 IVKNALTEEVTKPTGSTADQSYKMATSRCVRLMLVAMANDLKEVWISDQPFLLMIYLWQY 300
Query: 1011 IPTWAWWLTSKIGKKRIENFKSGVDADSSYFKIWKKKHD 1127
+PT AWWLT+K K+RIENFKSGVDADSSYF+ KKKHD
Sbjct: 301 MPTLAWWLTNKAAKRRIENFKSGVDADSSYFRSVKKKHD 339
>ref|NP_001030420.1| hypothetical protein LOC522283 [Bos taurus]
Length = 325
Score = 146 bits (368), Expect = 4e-35
Identities = 89/247 (36%), Positives = 137/247 (55%), Gaps = 3/247 (1%)
Frame = +3
Query: 264 VVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLEN---GILKGKDILIL 434
VV +TGA+SG+G E G LVL R + LE + + + G+ K +
Sbjct: 54 VVVITGATSGLGRECARVFHAAGARLVLCGRNAEALEELSQELAASRAPGVQTHKPCTVT 113
Query: 435 PLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVS 614
DLA+ + A +LQ FG +D+L+NN G+S R VDTS DV K +ME NY G V+
Sbjct: 114 -FDLADPGAIAGAASEILQCFGHVDVLINNAGISYRGAIVDTSPDVDKRVMETNYFGPVA 172
Query: 615 LTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGIT 794
LTK +LP MI ++QG ++ ++S G I+ P Y ASKHA + FF+ LR E+ + I
Sbjct: 173 LTKALLPAMIRRRQGHVVAISSIQGKISLPFRSAYAASKHATQAFFDCLRAEVEQH-DIE 231
Query: 795 VSNVCPGPVKSNIVKNALTEEVTKTLGSDADQSHKMATSRCARLMLIAMANDLKEVWIAE 974
V+ + PG + +N+ NA+T + +K D + + + A+ +L A+ K+V +A+
Sbjct: 232 VTVISPGYIHTNLSLNAVTADGSKYGVMDETTAQGRSPVQVAQDILAALGKKKKDVVLAD 291
Query: 975 QPFLSMA 995
P S+A
Sbjct: 292 -PMPSLA 297
>ref|XP_589371.1| PREDICTED: similar to CG7601-PA [Bos taurus]
Length = 311
Score = 105 bits (263), Expect = 6e-23
Identities = 66/189 (34%), Positives = 101/189 (53%), Gaps = 1/189 (0%)
Frame = +3
Query: 264 VVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGI-LKGKDILILPL 440
VV +T A SG+G+E G LVL + + L+ + + K ++ L
Sbjct: 39 VVVITDAISGLGKECARVFHTGGARLVLCGKNWERLQSLYDALISVADPSKTFTPKLVLL 98
Query: 441 DLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLT 620
DL++ S + K VL +G +DIL+NN V + SL++ K++M+ NY G + LT
Sbjct: 99 DLSDISCVQDVAKEVLDCYGCVDILINNASVKVKGPAHKISLELDKKIMDANYFGPIILT 158
Query: 621 KCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGITVS 800
K +LP MI ++ G+I+ VN+ G + P Y ASKHA GFF+ LR E+ Y + VS
Sbjct: 159 KALLPDMISRRTGQIVLVNNIQGKLGIPFRTAYAASKHAALGFFDCLRAEVEEY-DVVVS 217
Query: 801 NVCPGPVKS 827
V P ++S
Sbjct: 218 TVSPTFIRS 226
>ref|XP_872682.1| PREDICTED: similar to Dehydrogenase/reductase SDR family member 8
precursor (17-beta-hydroxysteroid dehydrogenase 11)
(17-beta-HSD 11) (17-beta-HSD XI) (17betaHSDXI)
(17bHSD11) (17betaHSD11) (Retinal short-chain
dehydrogenase/reductase 2) (retSDR2) (Cutaneous... iso
[Bos taurus]
Length = 316
Score = 93.6 bits (231), Expect = 3e-19
Identities = 64/202 (31%), Positives = 91/202 (45%), Gaps = 2/202 (0%)
Frame = +3
Query: 252 LTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILI 431
+T +V +TGA GIG + Y+ +KL LVL +E + C E + I
Sbjct: 50 VTGEIVLITGAGHGIGRQTAYEFAKLKCKLVLWDINKVIVESLGYLCREGST----KVFI 105
Query: 432 LPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTV 611
++ + S A + V E G + ILVNN GV S T ++ EVN L
Sbjct: 106 FIMNCSTESEMNQAAQEVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNILAHF 165
Query: 612 SLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATY--P 785
TK LP M++ G I+TV S G P YC+SK A GF L EL+
Sbjct: 166 WTTKAFLPEMMKNNHGHIVTVASAAGHTGVPFLLAYCSSKFAAVGFHKALTEELSALKRT 225
Query: 786 GITVSNVCPGPVKSNIVKNALT 851
G+ + +CP + + +KN T
Sbjct: 226 GVKTTCLCPNFINTGFIKNPST 247
>ref|XP_581861.2| PREDICTED: similar to follicular lymphoma variant translocation 1
[Bos taurus]
Length = 455
Score = 93.2 bits (230), Expect = 4e-19
Identities = 74/277 (26%), Positives = 127/277 (45%), Gaps = 31/277 (11%)
Frame = +3
Query: 225 WQGRRPEWELTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENG 404
W+ +P LT VTG SSGIG+ + + K G + L AR +L + K+ ++
Sbjct: 149 WKQPKPHALLT-----VTGGSSGIGKCIAIECYKQGAFITLVARNEDKLLQAKKEIEKHS 203
Query: 405 ILKGKDILILPLDLANRSSH-EVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKE 581
I + +L + +D++ S E K ++ G +D+LVN G+S D + ++
Sbjct: 204 INDKQVVLCISVDVSQDYSQVENVIKQAQEKLGPVDMLVNCAGMSLSGKFEDLEVSTFER 263
Query: 582 LMEVNYLGTVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTL 761
LM +NYLG+V ++ V+ M E++ G+++ V+S G + Y +SK ALRG L
Sbjct: 264 LMSINYLGSVYPSRAVIATMKERRMGRVVFVSSQAGQLGLFGYTAYSSSKFALRGLAEAL 323
Query: 762 RTELATY--------------PGITVSN---------------VC-PGPVKSNIVKNALT 851
+ E+ Y PG N VC P V IVK+A+
Sbjct: 324 QMEVKPYNVYVTVAYPPDTDTPGFAKENQTKPLETRLISETTSVCKPEQVAKQIVKDAVQ 383
Query: 852 EEVTKTLGSDADQSHKMATSRCARLMLIAMANDLKEV 962
++GSD + +++ C + ++ L++V
Sbjct: 384 GNFNSSIGSD---GYMLSSLTCGMAPVTSIMEGLQQV 417
>ref|NP_776592.1| retinol dehydrogenase 8 (all-trans) [Bos taurus]
Length = 312
Score = 92.0 bits (227), Expect = 9e-19
Identities = 67/208 (32%), Positives = 100/208 (48%), Gaps = 1/208 (0%)
Frame = +3
Query: 267 VWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLDL 446
V ++G SSGIG EL QL+ +++L + G G+ + + LD+
Sbjct: 8 VLISGCSSGIGLELAVQLAHDPRQRYQVVATMRDLGKKGTLETAAGEALGQTLTVAQLDV 67
Query: 447 ANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTKC 626
S VA + G++D+LVNN GV SL + + + N+ G V L K
Sbjct: 68 C--SDESVAQCLNCIQGGEVDVLVNNAGVGLVGPLEGLSLAAMQNVFDTNFFGAVRLVKA 125
Query: 627 VLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGITVSNV 806
VLP M ++QG I+ V+S MG+ + Y ASK A+ GFF +L +L + I +S V
Sbjct: 126 VLPSMKRRRQGHIVVVSSVMGLQGVVFNEVYAASKFAMEGFFESLAVQLLQF-NIFISLV 184
Query: 807 CPGPVKSNIVKNALTEEVTKTL-GSDAD 887
PGPV + L + T G+D D
Sbjct: 185 EPGPVVTEFEGKLLEQVSTAEFPGTDPD 212
>ref|NP_996852.1| 11-beta-hydroxysteroid dehydrogenase type 3 [Bos taurus]
Length = 287
Score = 89.0 bits (219), Expect = 8e-18
Identities = 60/170 (35%), Positives = 92/170 (54%), Gaps = 1/170 (0%)
Frame = +3
Query: 267 VWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLDL 446
V +TG S+GIGEEL Y ++LG LVL+A L++V C + G K + + D+
Sbjct: 32 VLLTGVSAGIGEELAYHYARLGSHLVLTAHTEALLQQVVGNCRKLGAPK---VFYIAADM 88
Query: 447 ANRSSHEVATKAVLQEFGKIDILV-NNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTK 623
A+ E + L + G +D LV N+ G + V +S + LM++N+L V LT
Sbjct: 89 ASPEVPERVVQFALDKLGGLDYLVLNHLGAAPAGTRVRSSQST-RWLMQMNFLSYVQLTS 147
Query: 624 CVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTEL 773
LP + + K G ++ V+S +G + S Y A+K AL FF++LR EL
Sbjct: 148 SALPSLTDSK-GSLVVVSSLLGRVPTSFSSPYSAAKFALDSFFSSLRREL 196
>ref|XP_879080.1| PREDICTED: similar to microsomal NAD+-dependent retinol
dehydrogenase 4 isoform 5 [Bos taurus]
Length = 317
Score = 84.7 bits (208), Expect = 1e-16
Identities = 62/198 (31%), Positives = 105/198 (53%), Gaps = 4/198 (2%)
Frame = +3
Query: 252 LTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILI 431
L D V++TG SG G L QL G+ ++ + + E+++ + + +
Sbjct: 27 LRDKFVFITGCDSGFGNLLARQLDLRGLRVLAACLTEKGAEQLRNQTSDR-------LQT 79
Query: 432 LPLDLANRSSHEVATKAVLQEFGKIDI--LVNNGGVSQRSLCVD--TSLDVYKELMEVNY 599
+ LD+ S AT+ V + G + LVNN G+S + + T D K +++VN
Sbjct: 80 VILDVTKTDSVAAATEWVKERVGDRGLWGLVNNAGISTPTAPNEWLTKQDFMK-ILDVNL 138
Query: 600 LGTVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELAT 779
LG + +T VLP ++ K +G+++ V+S MG +A L GGYC SK+ + F ++LR EL +
Sbjct: 139 LGVIDVTLSVLP-LVRKARGRVVNVSSIMGRVAL-LGGGYCMSKYGVEAFSDSLRREL-S 195
Query: 780 YPGITVSNVCPGPVKSNI 833
Y G+ V + PG K+ +
Sbjct: 196 YFGVKVVMIEPGYFKTAV 213
>ref|XP_878985.1| PREDICTED: similar to microsomal NAD+-dependent retinol
dehydrogenase 4 isoform 4 [Bos taurus]
Length = 317
Score = 84.7 bits (208), Expect = 1e-16
Identities = 62/198 (31%), Positives = 105/198 (53%), Gaps = 4/198 (2%)
Frame = +3
Query: 252 LTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILI 431
L D V++TG SG G L QL G+ ++ + + E+++ + + +
Sbjct: 27 LRDKFVFITGCDSGFGNLLARQLDLRGLRVLAACLTEKGAEQLRNQTSDR-------LQT 79
Query: 432 LPLDLANRSSHEVATKAVLQEFGKIDI--LVNNGGVSQRSLCVD--TSLDVYKELMEVNY 599
+ LD+ S AT+ V + G + LVNN G+S + + T D K +++VN
Sbjct: 80 VILDVTKTDSVAAATEWVKERVGDRGLWGLVNNAGISTPTAPNEWLTKQDFMK-ILDVNL 138
Query: 600 LGTVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELAT 779
LG + +T VLP ++ K +G+++ V+S MG +A L GGYC SK+ + F ++LR EL +
Sbjct: 139 LGVIDVTLSVLP-LVRKARGRVVNVSSIMGRVAL-LGGGYCMSKYGVEAFSDSLRREL-S 195
Query: 780 YPGITVSNVCPGPVKSNI 833
Y G+ V + PG K+ +
Sbjct: 196 YFGVKVVMIEPGYFKTAV 213
>ref|XP_878888.1| PREDICTED: similar to microsomal NAD+-dependent retinol
dehydrogenase 4 isoform 3 [Bos taurus]
Length = 317
Score = 84.7 bits (208), Expect = 1e-16
Identities = 62/198 (31%), Positives = 105/198 (53%), Gaps = 4/198 (2%)
Frame = +3
Query: 252 LTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILI 431
L D V++TG SG G L QL G+ ++ + + E+++ + + +
Sbjct: 27 LRDKFVFITGCDSGFGNLLARQLDLRGLRVLAACLTEKGAEQLRNQTSDR-------LQT 79
Query: 432 LPLDLANRSSHEVATKAVLQEFGKIDI--LVNNGGVSQRSLCVD--TSLDVYKELMEVNY 599
+ LD+ S AT+ V + G + LVNN G+S + + T D K +++VN
Sbjct: 80 VILDVTKTDSVAAATEWVKERVGDRGLWGLVNNAGISTPTAPNEWLTKQDFMK-ILDVNL 138
Query: 600 LGTVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELAT 779
LG + +T VLP ++ K +G+++ V+S MG +A L GGYC SK+ + F ++LR EL +
Sbjct: 139 LGVIDVTLSVLP-LVRKARGRVVNVSSIMGRVAL-LGGGYCMSKYGVEAFSDSLRREL-S 195
Query: 780 YPGITVSNVCPGPVKSNI 833
Y G+ V + PG K+ +
Sbjct: 196 YFGVKVVMIEPGYFKTAV 213
Database: RefSeqBP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 16,112,626
Number of sequences in database: 33,508
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,522,234
Number of Sequences: 33508
Number of extensions: 1023221
Number of successful extensions: 2939
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 2668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2880
length of database: 16,112,626
effective HSP length: 105
effective length of database: 12,594,286
effective search space used: 4244274382
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LVRM1_0014_E05
(1330 letters)
Database: RefSeqCP
33,732 sequences; 19,266,565 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537465.2| PREDICTED: similar to Dehydrogenase/reductase S... 564 e-161
Alignment gi|XP_536670.2| PREDICTED: similar to CG7601-PA [Canis familiaris] 149 8e-36
Alignment gi|XP_536640.2| PREDICTED: similar to CG7601-PA isoform 1 [Cani... 105 8e-23
Alignment gi|XP_861006.1| PREDICTED: similar to CG7601-PA isoform 2 [Cani... 104 2e-22
Alignment gi|NP_001005756.1| 11-beta-hydroxysteroid dehydrogenase 1 [Cani... 94 4e-19
Alignment gi|XP_535646.2| PREDICTED: similar to alcohol dehydrogenase PAN... 93 5e-19
Alignment gi|XP_850000.1| PREDICTED: similar to hydroxysteroid (17-beta) ... 93 5e-19
Alignment gi|XP_544970.2| PREDICTED: similar to dehydrogenase/reductase (... 93 5e-19
Alignment gi|XP_854042.1| PREDICTED: similar to retinol dehydrogenase 8 (... 93 7e-19
Alignment gi|XP_852048.1| PREDICTED: similar to follicular lymphoma varia... 89 1e-17
>ref|XP_537465.2| PREDICTED: similar to Dehydrogenase/reductase SDR family member 7
precursor (Retinal short-chain dehydrogenase/reductase 4)
(retSDR4) [Canis familiaris]
Length = 437
Score = 564 bits (1454), Expect = e-161
Identities = 275/349 (78%), Positives = 299/349 (85%)
Frame = +3
Query: 81 SPQSRACAAVMSWEXXXXXXXXXXXXXXXXXXXXXXXXDGDLTLLWAEWQGRRPEWELTD 260
SP SRA AA MSWE DGDLTLLWAEWQGRRPEWELTD
Sbjct: 89 SPASRARAAAMSWELLLWLLALGALLALLVQLLRFVRADGDLTLLWAEWQGRRPEWELTD 148
Query: 261 MVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPL 440
MV+WVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILK KDI +LPL
Sbjct: 149 MVIWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKEKDIFVLPL 208
Query: 441 DLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLT 620
DL +RSSHE ATKAVLQEFGKIDILVNNGG SQRSLCVDT+LDV+KELME+NYLGTVSLT
Sbjct: 209 DLTDRSSHEAATKAVLQEFGKIDILVNNGGQSQRSLCVDTNLDVFKELMELNYLGTVSLT 268
Query: 621 KCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGITVS 800
CVLPHMIE+KQGKI+TVNS +GII+APLS GYCASKHALRGFFN LR ELA YPGI +S
Sbjct: 269 MCVLPHMIERKQGKIVTVNSLLGIISAPLSSGYCASKHALRGFFNCLRVELAEYPGIVIS 328
Query: 801 NVCPGPVKSNIVKNALTEEVTKTLGSDADQSHKMATSRCARLMLIAMANDLKEVWIAEQP 980
N+CPGPV+SNIVKN+LTEEVTK++G D QSHKMATSRC RLMLI+MANDLKEVWIA+ P
Sbjct: 329 NICPGPVQSNIVKNSLTEEVTKSVGIDTVQSHKMATSRCVRLMLISMANDLKEVWIADHP 388
Query: 981 FLSMAYLWQYIPTWAWWLTSKIGKKRIENFKSGVDADSSYFKIWKKKHD 1127
FL + YLWQY+PTWAWWLT+ +GKKRIENFK+G+DAD SYFK WK KHD
Sbjct: 389 FLLVVYLWQYMPTWAWWLTNILGKKRIENFKNGLDADISYFKTWKTKHD 437
>ref|XP_536670.2| PREDICTED: similar to CG7601-PA [Canis familiaris]
Length = 325
Score = 149 bits (375), Expect = 8e-36
Identities = 88/243 (36%), Positives = 136/243 (55%), Gaps = 2/243 (0%)
Frame = +3
Query: 252 LTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDI-- 425
L + VV +TGA+SG+G E G LVL R + LE + + + K +
Sbjct: 50 LRNAVVVITGATSGLGRECARVFYTAGAKLVLCGRNQKALEELTKELTASPATKVQTHKP 109
Query: 426 LILPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLG 605
++ DLA+ + AT +LQ FG +D+L+NN G+S R VDT+ DV K++ME NY G
Sbjct: 110 YMVTFDLADPGAIIAATAEILQCFGYVDVLINNAGISYRGAIVDTTTDVDKKVMETNYFG 169
Query: 606 TVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYP 785
V+LTK +LP MI+++QG I+ ++S G I+ P Y ASKHA + FF+ LR E+ Y
Sbjct: 170 PVALTKALLPSMIKRRQGHIVVISSIQGKISIPFRSAYAASKHATQAFFDCLRAEMEQYE 229
Query: 786 GITVSNVCPGPVKSNIVKNALTEEVTKTLGSDADQSHKMATSRCARLMLIAMANDLKEVW 965
I V+ + PG + +N+ NA+T + + D + + AR +L A+ K+V
Sbjct: 230 -IEVTVISPGYIHTNLSLNAVTADGSTYGVMDKTTAQGRSPVEVARDVLAAVGKKKKDVI 288
Query: 966 IAE 974
+A+
Sbjct: 289 LAD 291
>ref|XP_536640.2| PREDICTED: similar to CG7601-PA isoform 1 [Canis familiaris]
Length = 311
Score = 105 bits (263), Expect = 8e-23
Identities = 66/194 (34%), Positives = 104/194 (53%), Gaps = 6/194 (3%)
Frame = +3
Query: 264 VVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDIL----- 428
VV +T A SG+G+E G LVL + + L+ L + ++ D
Sbjct: 39 VVVITDAISGLGKECARVFHTGGARLVLCGKNWERLQ-----ILYDALISVADPSKTFTP 93
Query: 429 -ILPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLG 605
++ LDL++ S + K VL +G +DIL+NN + + SL++ K++M+ NY G
Sbjct: 94 KLVLLDLSDISCVQDVAKEVLDCYGCVDILINNASMKVKGPAHKISLELDKKIMDANYFG 153
Query: 606 TVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYP 785
++LTK +LP MI ++ G+I+ VN+ G + P Y ASKHA GFF+ LR E+ Y
Sbjct: 154 PITLTKALLPDMISRRTGQIVLVNNIQGKLGIPFRTAYAASKHAALGFFDCLRAEVEEY- 212
Query: 786 GITVSNVCPGPVKS 827
+ VS V P ++S
Sbjct: 213 DVVVSTVSPTFIRS 226
>ref|XP_861006.1| PREDICTED: similar to CG7601-PA isoform 2 [Canis familiaris]
Length = 317
Score = 104 bits (260), Expect = 2e-22
Identities = 65/189 (34%), Positives = 101/189 (53%), Gaps = 6/189 (3%)
Frame = +3
Query: 264 VVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDIL----- 428
VV +T A SG+G+E G LVL + + L+ L + ++ D
Sbjct: 39 VVVITDAISGLGKECARVFHTGGARLVLCGKNWERLQ-----ILYDALISVADPSKTFTP 93
Query: 429 -ILPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLG 605
++ LDL++ S + K VL +G +DIL+NN + + SL++ K++M+ NY G
Sbjct: 94 KLVLLDLSDISCVQDVAKEVLDCYGCVDILINNASMKVKGPAHKISLELDKKIMDANYFG 153
Query: 606 TVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYP 785
++LTK +LP MI ++ G+I+ VN+ G + P Y ASKHA GFF+ LR E+ Y
Sbjct: 154 PITLTKALLPDMISRRTGQIVLVNNIQGKLGIPFRTAYAASKHAALGFFDCLRAEVEEY- 212
Query: 786 GITVSNVCP 812
+ VS V P
Sbjct: 213 DVVVSTVSP 221
>ref|NP_001005756.1| 11-beta-hydroxysteroid dehydrogenase 1 [Canis familiaris]
Length = 293
Score = 93.6 bits (231), Expect = 4e-19
Identities = 66/219 (30%), Positives = 115/219 (52%), Gaps = 1/219 (0%)
Frame = +3
Query: 237 RPEWELTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKG 416
RPE L V VTGAS GIGE++ Y L+K+G +V++AR + L++V CLE G
Sbjct: 28 RPEM-LQGKKVIVTGASKGIGEQMAYHLAKMGAHVVVTARSKETLKKVVSHCLELGAASA 86
Query: 417 KDILILPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVN 596
+P + + + E + G +D+L+ N + + + + MEVN
Sbjct: 87 H---YIPGTMEDMTFAEQFVAKAGKLMGGLDMLILNHITNTSMNLFSGDIHLVRRSMEVN 143
Query: 597 YLGTVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTE-L 773
+L V L+ LP M+++ G I+ V+S G +++PL Y ASK AL GFF+++R E
Sbjct: 144 FLSYVVLSAAALP-MLKQSNGSIVVVSSKAGKMSSPLVAPYSASKFALDGFFSSVRMEHS 202
Query: 774 ATYPGITVSNVCPGPVKSNIVKNALTEEVTKTLGSDADQ 890
T ++++ G + ++ A++ + T+G+ + +
Sbjct: 203 VTKVNVSITLCILGLINTDTAMKAVS-GILSTVGASSKE 240
>ref|XP_535646.2| PREDICTED: similar to alcohol dehydrogenase PAN1B-like isoform 1
[Canis familiaris]
Length = 271
Score = 93.2 bits (230), Expect = 5e-19
Identities = 66/198 (33%), Positives = 90/198 (45%), Gaps = 2/198 (1%)
Frame = +3
Query: 264 VVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLD 443
+V +TGA GIG Y+ +K LVL +E C + G + +D
Sbjct: 38 IVLITGAGHGIGRWTAYEFAKQKSRLVLWDINKHGVEETAAECRK----LGATVHTFVVD 93
Query: 444 LANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTK 623
NR + K V +E G + ILVNN G + + T + + E+N LG +TK
Sbjct: 94 CGNREDIYNSVKQVKKEVGDVTILVNNAGTVYPADLLSTKDEEITKTFEINILGHFWITK 153
Query: 624 CVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELAT--YPGITV 797
+LP MI++ G I+TV S G P YC+SK A GF L EL T GI
Sbjct: 154 ALLPSMIKRNHGHIVTVASVCGHGVIPYLIPYCSSKFAAVGFHRALTLELQTLGITGIKT 213
Query: 798 SNVCPGPVKSNIVKNALT 851
S +CP V + KN T
Sbjct: 214 SCLCPVFVNTGFTKNPST 231
>ref|XP_850000.1| PREDICTED: similar to hydroxysteroid (17-beta) dehydrogenase 13
isoform 2 [Canis familiaris]
Length = 300
Score = 93.2 bits (230), Expect = 5e-19
Identities = 66/198 (33%), Positives = 90/198 (45%), Gaps = 2/198 (1%)
Frame = +3
Query: 264 VVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLD 443
+V +TGA GIG Y+ +K LVL +E C + G + +D
Sbjct: 38 IVLITGAGHGIGRWTAYEFAKQKSRLVLWDINKHGVEETAAECRK----LGATVHTFVVD 93
Query: 444 LANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTK 623
NR + K V +E G + ILVNN G + + T + + E+N LG +TK
Sbjct: 94 CGNREDIYNSVKQVKKEVGDVTILVNNAGTVYPADLLSTKDEEITKTFEINILGHFWITK 153
Query: 624 CVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELAT--YPGITV 797
+LP MI++ G I+TV S G P YC+SK A GF L EL T GI
Sbjct: 154 ALLPSMIKRNHGHIVTVASVCGHGVIPYLIPYCSSKFAAVGFHRALTLELQTLGITGIKT 213
Query: 798 SNVCPGPVKSNIVKNALT 851
S +CP V + KN T
Sbjct: 214 SCLCPVFVNTGFTKNPST 231
>ref|XP_544970.2| PREDICTED: similar to dehydrogenase/reductase (SDR family) member 8
[Canis familiaris]
Length = 300
Score = 93.2 bits (230), Expect = 5e-19
Identities = 66/202 (32%), Positives = 89/202 (44%), Gaps = 2/202 (0%)
Frame = +3
Query: 252 LTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILI 431
+T +V +TGA GIG Y+ +KL LVL +E C G +
Sbjct: 34 VTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGIEDTAAECRR----LGAKVHA 89
Query: 432 LPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTV 611
+D +NR + V E G + ILVNN GV S T ++ EVN L
Sbjct: 90 FVVDCSNREDIYGSATKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHF 149
Query: 612 SLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATY--P 785
TK LP M++ G I+TV S G P YC+SK A GF L ELA
Sbjct: 150 WTTKAFLPVMMKNNHGHIVTVASAAGHTGVPFLLAYCSSKFAAVGFHKALTEELAALERT 209
Query: 786 GITVSNVCPGPVKSNIVKNALT 851
G+ + +CP + + +KNA T
Sbjct: 210 GVKTTCLCPNFINTGFIKNAST 231
>ref|XP_854042.1| PREDICTED: similar to retinol dehydrogenase 8 (all-trans) [Canis
familiaris]
Length = 312
Score = 92.8 bits (229), Expect = 7e-19
Identities = 65/207 (31%), Positives = 105/207 (50%)
Frame = +3
Query: 267 VWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLDL 446
V ++G SSGIG EL QL+ +++L + G G+ + + LD+
Sbjct: 8 VLISGCSSGIGLELAVQLAHDHRQRYRVVATMRDLGKKGTLETAAGEALGQTLTVAQLDV 67
Query: 447 ANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTKC 626
+ S VA + G++D+LVNN GV SL + +++ N+ G V L +
Sbjct: 68 CSEES--VAQCLSCIQGGEVDVLVNNAGVGLVGPLEGLSLAAMQNVLDTNFFGAVRLVRA 125
Query: 627 VLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGITVSNV 806
VLP M +++G I+ ++S MG+ + Y ASK AL GFF +L +L + I ++ V
Sbjct: 126 VLPGMKRRRKGHIVVISSVMGLQGVVFNEIYAASKFALEGFFESLAVQLLQF-NIFITLV 184
Query: 807 CPGPVKSNIVKNALTEEVTKTLGSDAD 887
PGPV ++ + L E+V+ T D D
Sbjct: 185 EPGPVATDF-EGKLLEQVSTTEFPDTD 210
>ref|XP_852048.1| PREDICTED: similar to follicular lymphoma variant translocation 1
[Canis familiaris]
Length = 509
Score = 89.0 bits (219), Expect = 1e-17
Identities = 55/172 (31%), Positives = 92/172 (53%), Gaps = 1/172 (0%)
Frame = +3
Query: 273 VTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLDLAN 452
VTG SSGIG+ + + K G + L AR +L + K+ ++ I + +L + +D++
Sbjct: 144 VTGGSSGIGKCIAIECYKQGAFITLVARNEDKLLQAKKEIEKHSINDKQVVLCISVDVSQ 203
Query: 453 RSSH-EVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTKCV 629
S E K ++ G +D+LVN G+S D + ++ LM VNYLG+V ++ V
Sbjct: 204 DYSQVENVIKQAQEKLGPVDMLVNCAGMSLSGKFEDLEVSTFERLMSVNYLGSVYPSRAV 263
Query: 630 LPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYP 785
+ M E++ G+I+ V+S G + Y +SK A+RG L+ E+ YP
Sbjct: 264 ITTMKERRVGRIVFVSSQAGQLGLFGFTAYSSSKFAIRGLAEALQMEVEIYP 315
Database: RefSeqCP
Posted date: Aug 1, 2006 9:25 PM
Number of letters in database: 19,266,565
Number of sequences in database: 33,732
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,905,387
Number of Sequences: 33732
Number of extensions: 1203842
Number of successful extensions: 3400
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 3043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3329
length of database: 19,266,565
effective HSP length: 106
effective length of database: 15,690,973
effective search space used: 5272166928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqSP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LVRM1_0014_E05
(1330 letters)
Database: RefSeqSP
1040 sequences; 434,620 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999413.1| 11-beta hydroxysteroid dehydrogenase isoform 1 ... 84 8e-18
Alignment gi|NP_999184.1| carbonyl reductase/NADP-retinol dehydrogenase [... 73 2e-14
Alignment gi|NP_999078.1| hydroxysteroid 11-beta dehydrogenase 2 [Sus scr... 65 4e-12
Alignment gi|NP_998992.1| carbonyl reductase [Sus scrofa] 60 1e-10
Alignment gi|NP_999471.1| 17beta-estradiol dehydrogenase [Sus scrofa] 59 3e-10
Alignment gi|NP_999238.1| 20-beta-hydroxysteroid dehydrogenase [Sus scrofa] 51 7e-08
>ref|NP_999413.1| 11-beta hydroxysteroid dehydrogenase isoform 1 [Sus scrofa]
Length = 292
Score = 84.0 bits (206), Expect = 8e-18
Identities = 60/178 (33%), Positives = 90/178 (50%)
Frame = +3
Query: 237 RPEWELTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKG 416
RPE L V VTGAS GIG E+ Y L+++G +V++AR + L++V LE G
Sbjct: 28 RPEM-LRGKKVIVTGASKGIGREMAYHLARMGAHVVVTARSEETLKKVVSHSLELGASSA 86
Query: 417 KDILILPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVN 596
+ D+ +L G +D+L+ N V + + + MEVN
Sbjct: 87 HYVAGTMEDMTFAEQFVAKAGKLL---GGLDMLILNHITQAFMTSVYDDIHLVRRSMEVN 143
Query: 597 YLGTVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTE 770
+L V L+ LP M+++ G I+ V+S G +A PL Y ASK AL GFF+++ E
Sbjct: 144 FLSYVVLSVAALP-MLKQSNGSIVVVSSQAGKMANPLVAPYSASKFALDGFFSSITKE 200
>ref|NP_999184.1| carbonyl reductase/NADP-retinol dehydrogenase [Sus scrofa]
Length = 260
Score = 72.8 bits (177), Expect = 2e-14
Identities = 54/194 (27%), Positives = 93/194 (47%), Gaps = 1/194 (0%)
Frame = +3
Query: 252 LTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILI 431
L + V VT ++ GIG + +L++ G +V+S+R+ + ++R G+ +
Sbjct: 12 LENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGL----SVTG 67
Query: 432 LPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQR-SLCVDTSLDVYKELMEVNYLGT 608
+ E + G +DILV+N V+ +D + +V+ +++ VN T
Sbjct: 68 TVCHVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKAT 127
Query: 609 VSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPG 788
V +TK V+P M ++ G ++ V+S P G Y SK AL G L ELA
Sbjct: 128 VLMTKAVVPEMEKRGGGSVLIVSSVGAYHPFPNLGPYNVSKTALLGLTKNLAVELAP-RN 186
Query: 789 ITVSNVCPGPVKSN 830
I V+ + PG +K+N
Sbjct: 187 IRVNCLAPGLIKTN 200
>ref|NP_999078.1| hydroxysteroid 11-beta dehydrogenase 2 [Sus scrofa]
Length = 400
Score = 65.1 bits (157), Expect = 4e-12
Identities = 57/202 (28%), Positives = 94/202 (46%), Gaps = 10/202 (4%)
Frame = +3
Query: 267 VWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLDL 446
V +TG SG G+ +L +G +++ + + + R + LK +L +DL
Sbjct: 85 VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLK-----LLQMDL 139
Query: 447 ANRSSHEVATKAVLQEFGKIDI-------LVNNGGVSQRSLCVDTSLD---VYKELMEVN 596
+ A + + EF K+ LVNN G L D L Y+ MEVN
Sbjct: 140 T-----KPADISRVLEFTKVHTASTGLWGLVNNAG--HNILVADAELSPVATYRSCMEVN 192
Query: 597 YLGTVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELA 776
+ GT+ +TK +LP ++ + G+I+TV+S G + P Y SK A+ ++ EL
Sbjct: 193 FFGTLEMTKALLP-LLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQ 251
Query: 777 TYPGITVSNVCPGPVKSNIVKN 842
+ G+ VS + P ++ VKN
Sbjct: 252 PW-GVKVSVIQPACFRTEAVKN 272
>ref|NP_998992.1| carbonyl reductase [Sus scrofa]
Length = 244
Score = 60.1 bits (144), Expect = 1e-10
Identities = 57/211 (27%), Positives = 94/211 (44%), Gaps = 1/211 (0%)
Frame = +3
Query: 273 VTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLDLAN 452
VTGA GIG + V L G +V R +L + + C I + +DL +
Sbjct: 12 VTGAGKGIGRDTVKALHVSGARVVAVTRTNGDLVSLSQEC--------PGIEPVCVDLGD 63
Query: 453 RSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTKCVL 632
AT+ L G +D+LVNN V+ +DT+ +V+ VN +++ V
Sbjct: 64 WE----ATERALGGVGPVDLLVNNAAVALMQPFLDTTKEVFDRSFNVNLRSVFQVSQIVA 119
Query: 633 PHMIEK-KQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGITVSNVC 809
MIE+ G I+ V+S + + P Y ++K A+ ++ EL + I V++V
Sbjct: 120 RSMIERGVPGSIVNVSSMVSHVTYPGLAAYSSTKGAMTMLTKSMAMELGPHK-IRVNSVN 178
Query: 810 PGPVKSNIVKNALTEEVTKTLGSDADQSHKM 902
P +V A+ VT SD + + K+
Sbjct: 179 P-----TVVLTAMGRSVT----SDPELARKL 200
>ref|NP_999471.1| 17beta-estradiol dehydrogenase [Sus scrofa]
Length = 737
Score = 58.9 bits (141), Expect = 3e-10
Identities = 50/177 (28%), Positives = 79/177 (44%), Gaps = 8/177 (4%)
Frame = +3
Query: 264 VVWVTGASSGIGEELVYQLSKLGVSLVLS-----ARRVQELERVKRRCLENGILKGKDIL 428
VV VTGA G+G ++ G S+V++ + V + + +E KG +
Sbjct: 11 VVLVTGAGGGLGRTYALAFAERGASVVVNDLGGDMKGVGKGSLAADKVVEEIRRKGGKAV 70
Query: 429 ILPLDLANRSSHEVA---TKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNY 599
AN S E KA L FG+ID++VNN G+ + S + + + V+
Sbjct: 71 ------ANYDSVEAGEKIVKAALDAFGRIDVVVNNAGILRDRSFSRISDEDWDMIQRVHL 124
Query: 600 LGTVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTE 770
G+ +T+ HM ++ G+II +S GI Y A+K L G N+L E
Sbjct: 125 RGSFMVTRAAWDHMKKQNFGRIIMTSSAAGIYGNFGQANYSAAKLGLLGLSNSLAVE 181
>ref|NP_999238.1| 20-beta-hydroxysteroid dehydrogenase [Sus scrofa]
Length = 289
Score = 50.8 bits (120), Expect = 7e-08
Identities = 43/147 (29%), Positives = 75/147 (51%), Gaps = 2/147 (1%)
Frame = +3
Query: 264 VVWVTGASSGIGEELVYQLSK-LGVSLVLSARRVQELERVKRRCLENGILKGKDILILPL 440
V VTGA+ GIG +V L + +VL+AR V + ++ G+ L
Sbjct: 7 VALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPR----FHQL 62
Query: 441 DLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKEL-MEVNYLGTVSL 617
D+ + S + +E+G +D+LVNN ++ + L T + EL M+ N++GT ++
Sbjct: 63 DIIDLQSIRALCDFLRKEYGGLDVLVNNAAIAFQ-LDNPTPFHIQAELTMKTNFMGTRNV 121
Query: 618 TKCVLPHMIEKKQGKIITVNSFMGIIA 698
+LP + K QG+++ V+S G+ A
Sbjct: 122 CTELLP--LIKPQGRVVNVSSTEGVRA 146
Database: RefSeqSP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 434,620
Number of sequences in database: 1040
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,171,795
Number of Sequences: 1040
Number of extensions: 28631
Number of successful extensions: 105
Number of sequences better than 1.0e-05: 6
Number of HSP's better than 0.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 434,620
effective HSP length: 80
effective length of database: 351,420
effective search space used: 127214040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LVRM1_0014_E05
(1330 letters)
Database: RefSeqHP
39,411 sequences; 17,774,539 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057113.1| dehydrogenase/reductase (SDR family) member 7 [... 548 e-156
Alignment gi|NP_056325.2| hypothetical protein LOC25979 [Homo sapiens] 145 1e-34
Alignment gi|XP_943583.1| PREDICTED: similar to CG7601-PA [Homo sapiens] 106 5e-23
Alignment gi|XP_113912.3| PREDICTED: similar to CG7601-PA [Homo sapiens] 106 5e-23
Alignment gi|NP_057329.1| dehydrogenase/reductase (SDR family) member 8 [... 100 2e-21
Alignment gi|NP_005516.1| 11-beta-hydroxysteroid dehydrogenase 1 [Homo sa... 93 6e-19
Alignment gi|NP_861420.1| 11-beta-hydroxysteroid dehydrogenase 1 [Homo sa... 93 6e-19
Alignment gi|NP_056540.1| retinol dehydrogenase 8 (all-trans) [Homo sapiens] 92 1e-18
Alignment gi|NP_835236.1| hydroxysteroid (17-beta) dehydrogenase 13 [Homo... 92 1e-18
Alignment gi|NP_941995.1| short-chain dehydrogenase/reductase 10 isoform ... 90 4e-18
>ref|NP_057113.1| dehydrogenase/reductase (SDR family) member 7 [Homo sapiens]
Length = 339
Score = 548 bits (1411), Expect = e-156
Identities = 262/311 (84%), Positives = 290/311 (93%)
Frame = +3
Query: 195 DGDLTLLWAEWQGRRPEWELTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELE 374
DGDLTLLWAEWQGRRPEWELTDMVVWVTGASSGIGEEL YQLSKLGVSLVLSARRV ELE
Sbjct: 29 DGDLTLLWAEWQGRRPEWELTDMVVWVTGASSGIGEELAYQLSKLGVSLVLSARRVHELE 88
Query: 375 RVKRRCLENGILKGKDILILPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCV 554
RVKRRCLENG LK KDIL+LPLDL + SHE ATKAVLQEFG+IDILVNNGG+SQRSLC+
Sbjct: 89 RVKRRCLENGNLKEKDILVLPLDLTDTGSHEAATKAVLQEFGRIDILVNNGGMSQRSLCM 148
Query: 555 DTSLDVYKELMEVNYLGTVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKH 734
DTSLDVY++L+E+NYLGTVSLTKCVLPHMIE+KQGKI+TVNS +GII+ PLS GYCASKH
Sbjct: 149 DTSLDVYRKLIELNYLGTVSLTKCVLPHMIERKQGKIVTVNSILGIISVPLSIGYCASKH 208
Query: 735 ALRGFFNTLRTELATYPGITVSNVCPGPVKSNIVKNALTEEVTKTLGSDADQSHKMATSR 914
ALRGFFN LRTELATYPGI VSN+CPGPV+SNIV+N+L EVTKT+G++ DQSHKM TSR
Sbjct: 209 ALRGFFNGLRTELATYPGIIVSNICPGPVQSNIVENSLAGEVTKTIGNNGDQSHKMTTSR 268
Query: 915 CARLMLIAMANDLKEVWIAEQPFLSMAYLWQYIPTWAWWLTSKIGKKRIENFKSGVDADS 1094
C RLMLI+MANDLKEVWI+EQPFL + YLWQY+PTWAWW+T+K+GKKRIENFKSGVDADS
Sbjct: 269 CVRLMLISMANDLKEVWISEQPFLLVTYLWQYMPTWAWWITNKMGKKRIENFKSGVDADS 328
Query: 1095 SYFKIWKKKHD 1127
SYFKI+K KHD
Sbjct: 329 SYFKIFKTKHD 339
>ref|NP_056325.2| hypothetical protein LOC25979 [Homo sapiens]
Length = 325
Score = 145 bits (365), Expect = 1e-34
Identities = 86/243 (35%), Positives = 135/243 (55%), Gaps = 2/243 (0%)
Frame = +3
Query: 252 LTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDI-- 425
L + VV +TGA+SG+G+E G LVL R LE + R + K +
Sbjct: 50 LRNAVVVITGATSGLGKECAKVFYAAGAKLVLCGRNGGALEELIRELTASHATKVQTHKP 109
Query: 426 LILPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLG 605
++ DL + + A +LQ FG +DILVNN G+S R +DT++DV K +ME NY G
Sbjct: 110 YLVTFDLTDSGAIVAAAAEILQCFGYVDILVNNAGISYRGTIMDTTVDVDKRVMETNYFG 169
Query: 606 TVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYP 785
V+LTK +LP MI+++QG I+ ++S G ++ P Y ASKHA + FF+ LR E+ Y
Sbjct: 170 PVALTKALLPSMIKRRQGHIVAISSIQGKMSIPFRSAYAASKHATQAFFDCLRAEMEQYE 229
Query: 786 GITVSNVCPGPVKSNIVKNALTEEVTKTLGSDADQSHKMATSRCARLMLIAMANDLKEVW 965
I V+ + PG + +N+ NA+T + ++ D + + A+ +L A+ K+V
Sbjct: 230 -IEVTVISPGYIHTNLSVNAITADGSRYGVMDTTTAQGRSPVEVAQDVLAAVGKKKKDVI 288
Query: 966 IAE 974
+A+
Sbjct: 289 LAD 291
>ref|XP_943583.1| PREDICTED: similar to CG7601-PA [Homo sapiens]
Length = 308
Score = 106 bits (264), Expect = 5e-23
Identities = 66/189 (34%), Positives = 101/189 (53%), Gaps = 1/189 (0%)
Frame = +3
Query: 264 VVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGI-LKGKDILILPL 440
VV +T A SG+G+E G LVL + + LE + + K ++ L
Sbjct: 36 VVVITDAISGLGKECARVFHTGGARLVLCGKNWERLENLYDALISVADPSKTFTPKLVLL 95
Query: 441 DLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLT 620
DL++ S K VL +G +DIL+NN V + SL++ K++M+ NY G ++LT
Sbjct: 96 DLSDISCVPDVAKEVLDCYGCVDILINNASVKVKGPAHKISLELDKKIMDANYFGPITLT 155
Query: 621 KCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGITVS 800
K +LP+MI ++ G+I+ VN+ G P Y ASKHA GFF+ LR E+ Y + +S
Sbjct: 156 KALLPNMISRRTGQIVLVNNIQGKFGIPFRTTYAASKHAALGFFDCLRAEVEEY-DVVIS 214
Query: 801 NVCPGPVKS 827
V P ++S
Sbjct: 215 TVSPTFIRS 223
>ref|XP_113912.3| PREDICTED: similar to CG7601-PA [Homo sapiens]
Length = 308
Score = 106 bits (264), Expect = 5e-23
Identities = 66/189 (34%), Positives = 101/189 (53%), Gaps = 1/189 (0%)
Frame = +3
Query: 264 VVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGI-LKGKDILILPL 440
VV +T A SG+G+E G LVL + + LE + + K ++ L
Sbjct: 36 VVVITDAISGLGKECARVFHTGGARLVLCGKNWERLENLYDALISVADPSKTFTPKLVLL 95
Query: 441 DLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLT 620
DL++ S K VL +G +DIL+NN V + SL++ K++M+ NY G ++LT
Sbjct: 96 DLSDISCVPDVAKEVLDCYGCVDILINNASVKVKGPAHKISLELDKKIMDANYFGPITLT 155
Query: 621 KCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGITVS 800
K +LP+MI ++ G+I+ VN+ G P Y ASKHA GFF+ LR E+ Y + +S
Sbjct: 156 KALLPNMISRRTGQIVLVNNIQGKFGIPFRTTYAASKHAALGFFDCLRAEVEEY-DVVIS 214
Query: 801 NVCPGPVKS 827
V P ++S
Sbjct: 215 TVSPTFIRS 223
>ref|NP_057329.1| dehydrogenase/reductase (SDR family) member 8 [Homo sapiens]
Length = 300
Score = 100 bits (250), Expect = 2e-21
Identities = 70/202 (34%), Positives = 94/202 (46%), Gaps = 2/202 (0%)
Frame = +3
Query: 252 LTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILI 431
+T +V +TGA GIG Y+ +KL LVL LE +C G+ G +
Sbjct: 34 VTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKC--KGL--GAKVHT 89
Query: 432 LPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTV 611
+D +NR + K V E G + ILVNN GV S T ++ EVN L
Sbjct: 90 FVVDCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHF 149
Query: 612 SLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELAT--YP 785
TK LP M + G I+TV S G ++ P YC+SK A GF TL ELA
Sbjct: 150 WTTKAFLPAMTKNNHGHIVTVASAAGHVSVPFLLAYCSSKFAAVGFHKTLTDELAALQIT 209
Query: 786 GITVSNVCPGPVKSNIVKNALT 851
G+ + +CP V + +KN T
Sbjct: 210 GVKTTCLCPNFVNTGFIKNPST 231
>ref|NP_005516.1| 11-beta-hydroxysteroid dehydrogenase 1 [Homo sapiens]
Length = 292
Score = 92.8 bits (229), Expect = 6e-19
Identities = 65/178 (36%), Positives = 94/178 (52%)
Frame = +3
Query: 237 RPEWELTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKG 416
RPE L V VTGAS GIG E+ Y L+K+G +V++AR + L++V CLE G
Sbjct: 28 RPEM-LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASA 86
Query: 417 KDILILPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVN 596
I D+ + VA L G +D+L+ N + + ++ MEVN
Sbjct: 87 HYIAGTMEDM-TFAEQFVAQAGKL--MGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVN 143
Query: 597 YLGTVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTE 770
+L V LT LP M+++ G I+ V+S G +A P+ Y ASK AL GFF+++R E
Sbjct: 144 FLSYVVLTVAALP-MLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKE 200
>ref|NP_861420.1| 11-beta-hydroxysteroid dehydrogenase 1 [Homo sapiens]
Length = 292
Score = 92.8 bits (229), Expect = 6e-19
Identities = 65/178 (36%), Positives = 94/178 (52%)
Frame = +3
Query: 237 RPEWELTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKG 416
RPE L V VTGAS GIG E+ Y L+K+G +V++AR + L++V CLE G
Sbjct: 28 RPEM-LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASA 86
Query: 417 KDILILPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVN 596
I D+ + VA L G +D+L+ N + + ++ MEVN
Sbjct: 87 HYIAGTMEDM-TFAEQFVAQAGKL--MGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVN 143
Query: 597 YLGTVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTE 770
+L V LT LP M+++ G I+ V+S G +A P+ Y ASK AL GFF+++R E
Sbjct: 144 FLSYVVLTVAALP-MLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKE 200
>ref|NP_056540.1| retinol dehydrogenase 8 (all-trans) [Homo sapiens]
Length = 311
Score = 92.0 bits (227), Expect = 1e-18
Identities = 66/214 (30%), Positives = 106/214 (49%), Gaps = 4/214 (1%)
Frame = +3
Query: 267 VWVTGASSGIGEELVYQLS---KLGVSLVLSARRVQELERVKRRCLENGILKGKDILILP 437
V ++G SSGIG EL QL+ K +V + R + + E ++ G G+ + +
Sbjct: 8 VLISGCSSGIGLELAVQLAHDPKKRYQVVATMRDLGKKETLEAAA---GEALGQTLTVAQ 64
Query: 438 LDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSL 617
LD+ + S + G++D+LVNN G+ SL + + + N+ G V L
Sbjct: 65 LDVCSDESVAQCLSCIQ---GEVDVLVNNAGMGLVGPLEGLSLAAMQNVFDTNFFGAVRL 121
Query: 618 TKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGITV 797
K VLP M ++QG I+ ++S MG+ + Y ASK AL GFF +L +L + I +
Sbjct: 122 VKAVLPGMKRRRQGHIVVISSVMGLQGVIFNDVYAASKFALEGFFESLAIQLLQF-NIFI 180
Query: 798 SNVCPGPVKSNIVKNALTE-EVTKTLGSDADQSH 896
S V PGPV + L + + + G+D + H
Sbjct: 181 SLVEPGPVVTEFEGKLLAQVSMAEFPGTDPETLH 214
>ref|NP_835236.1| hydroxysteroid (17-beta) dehydrogenase 13 [Homo sapiens]
Length = 300
Score = 92.0 bits (227), Expect = 1e-18
Identities = 64/198 (32%), Positives = 93/198 (46%), Gaps = 2/198 (1%)
Frame = +3
Query: 264 VVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLD 443
+V +TGA GIG + Y+ +K LVL + +E C + G+ ++ D
Sbjct: 38 IVLITGAGHGIGRQTTYEFAKRQSILVLWDINKRGVEETAAECRKLGVTAHAYVV----D 93
Query: 444 LANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTK 623
+NR + V +E G + I+VNN G + + T + + EVN LG +TK
Sbjct: 94 CSNREEIYRSLNQVKKEVGDVTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITK 153
Query: 624 CVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATY--PGITV 797
+LP M+E+ G I+TV S G P YC+SK A GF L +EL GI
Sbjct: 154 ALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVGFHRGLTSELQALGKTGIKT 213
Query: 798 SNVCPGPVKSNIVKNALT 851
S +CP V + KN T
Sbjct: 214 SCLCPVFVNTGFTKNPST 231
>ref|NP_941995.1| short-chain dehydrogenase/reductase 10 isoform b [Homo sapiens]
Length = 286
Score = 90.1 bits (222), Expect = 4e-18
Identities = 60/171 (35%), Positives = 92/171 (53%), Gaps = 2/171 (1%)
Frame = +3
Query: 267 VWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLDL 446
V +TGA++G+GEEL Y ++LG LVL+A L++V C + G K + + D+
Sbjct: 32 VLLTGANAGVGEELAYHYARLGSHLVLTAHTEALLQKVVGNCRKLGAPK---VFYIAADM 88
Query: 447 ANRSSHEVATKAVLQEFGKIDILVNN--GGVSQRSLCVDTSLDVYKELMEVNYLGTVSLT 620
A+ + E + L + G +D LV N GG + S + LM+VN++ V LT
Sbjct: 89 ASPEAPESVVQFALDKLGGLDYLVLNHIGGAPAGTRA--RSPQATRWLMQVNFVSYVQLT 146
Query: 621 KCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTEL 773
LP + + K G ++ V+S +G + S Y A+K AL GFF +LR EL
Sbjct: 147 SRALPSLTDSK-GSLVVVSSLLGRVPTSFSTPYSAAKFALDGFFGSLRREL 196
Database: RefSeqHP
Posted date: Aug 2, 2006 12:57 AM
Number of letters in database: 17,774,539
Number of sequences in database: 39,411
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,977,188
Number of Sequences: 39411
Number of extensions: 1188367
Number of successful extensions: 3437
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 3058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3374
length of database: 17,774,539
effective HSP length: 105
effective length of database: 13,636,384
effective search space used: 4595461408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LVRM1_0014_E05
(1330 letters)
Database: RefSeqMP
45,328 sequences; 21,768,885 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079798.1| retinal short-chain dehydrogenase/reductase 4 [... 429 e-120
Alignment gi|NP_663403.1| hypothetical protein LOC216820 [Mus musculus] 151 2e-36
Alignment gi|NP_032314.1| hydroxysteroid 11-beta dehydrogenase 1 [Mus mus... 99 8e-21
Alignment gi|NP_001025461.1| retinol dehydrogenase 8 [Mus musculus] 98 2e-20
Alignment gi|NP_001013031.1| hypothetical protein LOC68460 [Mus musculus] 97 4e-20
Alignment gi|NP_444492.1| dehydrogenase/reductase (SDR family) member 8 [... 95 1e-19
Alignment gi|NP_932147.1| alcohol dehydrogenase PAN1B-like [Mus musculus] 91 3e-18
Alignment gi|NP_663399.1| cis-retinol/3alpha hydroxysterol short-chain de... 89 1e-17
Alignment gi|XP_203753.2| PREDICTED: follicular lymphoma variant transloc... 89 1e-17
Alignment gi|XP_915916.1| PREDICTED: similar to 3-ketodihydrosphingosine ... 89 1e-17
>ref|NP_079798.1| retinal short-chain dehydrogenase/reductase 4 [Mus musculus]
Length = 288
Score = 429 bits (1103), Expect = e-120
Identities = 214/289 (74%), Positives = 245/289 (84%)
Frame = +3
Query: 261 MVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPL 440
MVVWVTGASSGIGEEL +QLSKLGVSLVLSARR QELERVKRRCLENG LK KDIL+LPL
Sbjct: 1 MVVWVTGASSGIGEELAFQLSKLGVSLVLSARRAQELERVKRRCLENGNLKEKDILVLPL 60
Query: 441 DLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLT 620
DL + SSHE ATKAVLQEFGKIDILVNNGG SQRSL ++T+LDV+KEL+ +NY+GTVSLT
Sbjct: 61 DLTDTSSHEAATKAVLQEFGKIDILVNNGGRSQRSLVLETNLDVFKELINLNYIGTVSLT 120
Query: 621 KCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGITVS 800
KCVLPHMIE+KQGKI+TVNS GI + LS GYCASKHALRGFFN L +EL YPGIT
Sbjct: 121 KCVLPHMIERKQGKIVTVNSIAGIASVSLSSGYCASKHALRGFFNALHSELGQYPGITFC 180
Query: 801 NVCPGPVKSNIVKNALTEEVTKTLGSDADQSHKMATSRCARLMLIAMANDLKEVWIAEQP 980
NV PGPV+S+IVKNA TEEVTK++ ++ DQS+KM TSRC RLMLI+MANDLKEVWI++ P
Sbjct: 181 NVYPGPVQSDIVKNAFTEEVTKSMRNNIDQSYKMPTSRCVRLMLISMANDLKEVWISDHP 240
Query: 981 FLSMAYLWQYIPTWAWWLTSKIGKKRIENFKSGVDADSSYFKIWKKKHD 1127
L AY+WQY+PTWA WL K+GK+RI+NFK+ +D D Y K K K D
Sbjct: 241 VLLGAYIWQYMPTWAAWLNCKLGKERIQNFKNNLDPDLPY-KFLKAKKD 288
>ref|NP_663403.1| hypothetical protein LOC216820 [Mus musculus]
Length = 323
Score = 151 bits (381), Expect = 2e-36
Identities = 84/241 (34%), Positives = 135/241 (56%)
Frame = +3
Query: 252 LTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILI 431
L + VV VTGA+SG+G E G LVL R V+ LE + R + + +
Sbjct: 50 LRNAVVVVTGATSGLGRECAKVFHAAGAKLVLCGRNVKALEELSRELAGSSQGQTHQPFV 109
Query: 432 LPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTV 611
+ DLA+ + A +LQ FG +D+L+NN G+S R DT +DV +++ME+NY G V
Sbjct: 110 VTFDLADPGTIAAAAAEILQCFGYVDVLINNAGISYRGTISDTIVDVDRKVMEINYFGPV 169
Query: 612 SLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGI 791
+LTK +LP M+E+KQG I+ ++S G I+ P Y ASKHA + FF+ LR E+ I
Sbjct: 170 ALTKALLPSMVERKQGHIVAISSIQGKISIPFRSAYSASKHATQAFFDCLRAEMEE-ANI 228
Query: 792 TVSNVCPGPVKSNIVKNALTEEVTKTLGSDADQSHKMATSRCARLMLIAMANDLKEVWIA 971
V+ + PG + +N+ NA+T + ++ D + + + + A+ + A+ K+V +
Sbjct: 229 KVTVISPGYIHTNLSVNAVTADGSRYGALDKNTAQGRSAAEVAQDVFDAVGKKKKDVLLT 288
Query: 972 E 974
+
Sbjct: 289 D 289
>ref|NP_032314.1| hydroxysteroid 11-beta dehydrogenase 1 [Mus musculus]
Length = 292
Score = 99.4 bits (246), Expect = 8e-21
Identities = 68/180 (37%), Positives = 99/180 (55%), Gaps = 1/180 (0%)
Frame = +3
Query: 237 RPEWELTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKG 416
RPE L V VTGAS GIG E+ Y LSK+G +VL+AR + L++V RCLE G
Sbjct: 28 RPEM-LQGKKVIVTGASKGIGREMAYHLSKMGAHVVLTARSEEGLQKVVSRCLELGAASA 86
Query: 417 KDILILPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCV-DTSLDVYKELMEV 593
I D+ V ++ G +D+L+ N ++Q SL + + + +MEV
Sbjct: 87 HYIAGTMEDMTFAEQFIVKAGKLM---GGLDMLILN-HITQTSLSLFHDDIHSVRRVMEV 142
Query: 594 NYLGTVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTEL 773
N+L V ++ LP M+++ G I ++S G + P+ Y ASK AL GFF+T+RTEL
Sbjct: 143 NFLSYVVMSTAALP-MLKQSNGSIAVISSLAGKMTQPMIAPYSASKFALDGFFSTIRTEL 201
>ref|NP_001025461.1| retinol dehydrogenase 8 [Mus musculus]
Length = 317
Score = 98.2 bits (243), Expect = 2e-20
Identities = 71/210 (33%), Positives = 107/210 (50%), Gaps = 3/210 (1%)
Frame = +3
Query: 267 VWVTGASSGIGEELVYQLS---KLGVSLVLSARRVQELERVKRRCLENGILKGKDILILP 437
V ++G SSGIG EL QL+ + +V + R + + E ++ G GK + ++
Sbjct: 8 VLISGCSSGIGLELALQLAHDPRQRYQVVATMRDLGKKEPLEAAA---GEALGKTLSVVQ 64
Query: 438 LDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSL 617
LD+ N S + E G++D+LVNN GV SL + + N+ G V L
Sbjct: 65 LDVCNDESVTDCLSHI--EGGQVDVLVNNAGVGLVGPLEGLSLATMQSVFNTNFFGAVRL 122
Query: 618 TKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGITV 797
K VLP M ++QG I+ V+S MG+ + Y ASK AL GFF +L +L + I +
Sbjct: 123 VKAVLPGMKRRRQGHIVVVSSVMGLQGVMFNDVYAASKFALEGFFESLAIQLRQF-NIFI 181
Query: 798 SNVCPGPVKSNIVKNALTEEVTKTLGSDAD 887
S V PGPV ++ + L +V+K D D
Sbjct: 182 SMVEPGPVTTDF-EGKLLAQVSKAEFPDTD 210
>ref|NP_001013031.1| hypothetical protein LOC68460 [Mus musculus]
Length = 237
Score = 97.1 bits (240), Expect = 4e-20
Identities = 50/130 (38%), Positives = 78/130 (60%)
Frame = +3
Query: 438 LDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSL 617
+DL++ S + K VL +G +DIL+NN V + SL++ K++M+ NY G ++L
Sbjct: 24 VDLSDISCVQDVAKEVLDCYGCVDILINNASVKVKGPAHKISLELDKKIMDANYFGPITL 83
Query: 618 TKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGITV 797
TK +LP+MI ++ G+I+ VN+ P Y ASKHA+ GFF+ LR E+ Y + V
Sbjct: 84 TKVLLPNMISRRTGQIVLVNNIQAKFGIPFRTAYAASKHAVMGFFDCLRAEVEEY-DVVV 142
Query: 798 SNVCPGPVKS 827
S V P ++S
Sbjct: 143 STVSPTYIRS 152
>ref|NP_444492.1| dehydrogenase/reductase (SDR family) member 8 [Mus musculus]
Length = 298
Score = 95.1 bits (235), Expect = 1e-19
Identities = 65/198 (32%), Positives = 89/198 (44%), Gaps = 2/198 (1%)
Frame = +3
Query: 264 VVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLD 443
+V +TGA GIG Y+ +KL LVL +E +C + G ++ D
Sbjct: 38 IVLITGAGHGIGRLTAYEFAKLNTKLVLWDINKNGIEETAAKCRKLGAQAHPFVV----D 93
Query: 444 LANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTK 623
+ R A K V +E G + ILVNN GV + T ++ EVN L TK
Sbjct: 94 CSQREEIYSAAKKVKEEVGDVSILVNNAGVVYTADLFATQDPQIEKTFEVNVLAHFWTTK 153
Query: 624 CVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATY--PGITV 797
LP M++ G I+TV S G P YC+SK A GF L ELA G+
Sbjct: 154 AFLPVMMKNNHGHIVTVASAAGHTVVPFLLAYCSSKFAAVGFHRALTDELAALGRTGVRT 213
Query: 798 SNVCPGPVKSNIVKNALT 851
S +CP + + +KN T
Sbjct: 214 SCLCPNFINTGFIKNPST 231
>ref|NP_932147.1| alcohol dehydrogenase PAN1B-like [Mus musculus]
Length = 304
Score = 90.9 bits (224), Expect = 3e-18
Identities = 67/217 (30%), Positives = 100/217 (46%), Gaps = 10/217 (4%)
Frame = +3
Query: 252 LTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILI 431
+T V +TGA GIG Y+ +K LVL + +E +C + G + + +
Sbjct: 34 VTGQTVLITGAGHGIGRLTAYEFAKQKSRLVLWDINKRGVEETADKCRKLGAV----VHV 89
Query: 432 LPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTV 611
+D +NR+ + V +E G ++I+VNN G + + + + EVN LG
Sbjct: 90 FVVDCSNRAEIYNSVDQVKREVGDVEIVVNNAGAIYPADLLSAKDEEITKTFEVNILGHF 149
Query: 612 SLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATY--P 785
+ K +LP M+ + G I+TV S G P YC+SK A GF L EL T
Sbjct: 150 WIIKALLPSMLRRNSGHIVTVASVCGHGVIPYLIPYCSSKFAAVGFHRALTAELDTLGKT 209
Query: 786 GITVSNVCPGPVKSNIVKNALT--------EEVTKTL 872
GI S +CP V + KN T EEV ++L
Sbjct: 210 GIKTSCLCPVFVNTGFTKNPSTRLWPVLEPEEVARSL 246
>ref|NP_663399.1| cis-retinol/3alpha hydroxysterol short-chain dehydrogenase-like
[Mus musculus]
Length = 318
Score = 89.0 bits (219), Expect = 1e-17
Identities = 59/191 (30%), Positives = 103/191 (53%), Gaps = 3/191 (1%)
Frame = +3
Query: 252 LTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILI 431
L D V++TG SG G L QL + G+ ++ + R+ + E ++R+ E +
Sbjct: 27 LQDKYVFITGCGSGFGNLLARQLDRRGMRVLAACRKEEGAEELRRKTSER-------LET 79
Query: 432 LPLDLANRSSHEVATKAVLQEFGKIDI--LVNNGGVSQRSLCVD-TSLDVYKELMEVNYL 602
+ LD+ S AT+ V + G + LVNN G+S S + + +++VN L
Sbjct: 80 VILDVTKTESIVAATQWVKERVGNRGLWGLVNNAGISVPSGPNEWMKKQDFASVLDVNLL 139
Query: 603 GTVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATY 782
G + +T +LP ++ K +G+++ V+S +G ++ SGGYC SK+ + F ++LR EL Y
Sbjct: 140 GLIEVTLSMLP-LVRKARGRVVNVSSILGRVSLGGSGGYCISKYGIEAFSDSLRREL-RY 197
Query: 783 PGITVSNVCPG 815
G+ V+ + PG
Sbjct: 198 FGVKVAIIEPG 208
>ref|XP_203753.2| PREDICTED: follicular lymphoma variant translocation 1 isoform 1
[Mus musculus]
Length = 332
Score = 88.6 bits (218), Expect = 1e-17
Identities = 68/263 (25%), Positives = 123/263 (46%), Gaps = 31/263 (11%)
Frame = +3
Query: 267 VWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLDL 446
V VTG SSGIG+ + + K G + L AR +L + K+ ++ I + +L + +D+
Sbjct: 35 VVVTGGSSGIGKCIAIECYKQGAFITLVARNEDKLLQAKKDIEKHSINDKQVVLCISVDV 94
Query: 447 ANRSSH-EVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTK 623
+ + E K ++ G +D+LVN G S + + +++LM +NYLG+V ++
Sbjct: 95 SQDYNQVENVIKQAQEKLGPVDMLVNCAGTSMSGKFEELEVSSFEKLMSINYLGSVYPSR 154
Query: 624 CVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATY------- 782
V+ M E++ G+I+ V+S G + Y +SK A+RG L+ E+ Y
Sbjct: 155 AVITTMKERRVGRIVFVSSQAGQLGLFGFTAYSSSKFAIRGLAEALQMEVKPYNVYVTVA 214
Query: 783 -------PGITVSN---------------VC-PGPVKSNIVKNALTEEVTKTLGSDADQS 893
PG+ N +C P V IVK+A+ ++GSD
Sbjct: 215 YPPDTDTPGLAEENKTKPLETRLISETTAICKPEQVAKQIVKDAIQGNFNSSIGSD---G 271
Query: 894 HKMATSRCARLMLIAMANDLKEV 962
+ +++ C + ++ L++V
Sbjct: 272 YMLSSLTCGMAPVTSITEGLQQV 294
>ref|XP_915916.1| PREDICTED: similar to 3-ketodihydrosphingosine reductase precursor
(3-dehydrosphinganine reductase) (KDS reductase)
(Follicular variant translocation protein 1) (FVT-1)
isoform 4 [Mus musculus]
Length = 332
Score = 88.6 bits (218), Expect = 1e-17
Identities = 68/263 (25%), Positives = 123/263 (46%), Gaps = 31/263 (11%)
Frame = +3
Query: 267 VWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLDL 446
V VTG SSGIG+ + + K G + L AR +L + K+ ++ I + +L + +D+
Sbjct: 35 VVVTGGSSGIGKCIAIECYKQGAFITLVARNEDKLLQAKKDIEKHSINDKQVVLCISVDV 94
Query: 447 ANRSSH-EVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTK 623
+ + E K ++ G +D+LVN G S + + +++LM +NYLG+V ++
Sbjct: 95 SQDYNQVENVIKQAQEKLGPVDMLVNCAGTSMSGKFEELEVSSFEKLMSINYLGSVYPSR 154
Query: 624 CVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATY------- 782
V+ M E++ G+I+ V+S G + Y +SK A+RG L+ E+ Y
Sbjct: 155 AVITTMKERRVGRIVFVSSQAGQLGLFGFTAYSSSKFAIRGLAEALQMEVKPYNVYVTVA 214
Query: 783 -------PGITVSN---------------VC-PGPVKSNIVKNALTEEVTKTLGSDADQS 893
PG+ N +C P V IVK+A+ ++GSD
Sbjct: 215 YPPDTDTPGLAEENKTKPLETRLISETTAICKPEQVAKQIVKDAIQGNFNSSIGSD---G 271
Query: 894 HKMATSRCARLMLIAMANDLKEV 962
+ +++ C + ++ L++V
Sbjct: 272 YMLSSLTCGMAPVTSITEGLQQV 294
Database: RefSeqMP
Posted date: Aug 2, 2006 12:58 AM
Number of letters in database: 21,768,885
Number of sequences in database: 45,328
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,624,899
Number of Sequences: 45328
Number of extensions: 1397853
Number of successful extensions: 3994
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 3505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3924
length of database: 21,768,885
effective HSP length: 107
effective length of database: 16,918,789
effective search space used: 5667794315
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)