Animal-Genome cDNA LVRM1_0154_C03


Search to RefSeqBP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= LVRM1_0154_C03
         (1434 letters)

Database: RefSeqBP 
           33,508 sequences; 16,112,626 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_991368.1| lysosomal-associated protein transmembrane 4 al...   399   e-111
Alignment   gi|NP_991371.1| similar to lysosomal associated protein transme...   166   3e-41
Alignment   gi|XP_602449.2| PREDICTED: similar to lysosomal-associated prot...   123   3e-28
Alignment   gi|XP_589869.2| PREDICTED: similar to Lysosomal-associated mult...    51   3e-06

>ref|NP_991368.1| lysosomal-associated protein transmembrane 4 alpha [Bos taurus]
          Length = 233

 Score =  399 bits (1024), Expect = e-111
 Identities = 195/221 (88%), Positives = 196/221 (88%)
 Frame = +1

Query: 175 MVSMTFKRSRSDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSVPAV 354
           MVSMTFKRSRSDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNS+PAV
Sbjct: 1   MVSMTFKRSRSDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSMPAV 60

Query: 355 NIQYEVIGNYYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDF 534
           NIQYEVIGNYYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDF
Sbjct: 61  NIQYEVIGNYYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDF 120

Query: 535 VLSCLVAISSLTYLPRIKEYLDQLPDFPYKXXXXXXXXXXXXXXXXXXXXXXXXXKAYLI 714
           VLSCLVAISSLTYLPRIKEYLDQLPDFPYK                         KAYLI
Sbjct: 121 VLSCLVAISSLTYLPRIKEYLDQLPDFPYKDDLLALDSSCLLFIVLVFFALFIIFKAYLI 180

Query: 715 NCVWNCYKYINNRNMPEIAVYPAFEAPPQYVLPTYEMAVKM 837
           NCVWNCYKYINNRNMPEIAVYPAFEAPPQYVLPTYEMAVKM
Sbjct: 181 NCVWNCYKYINNRNMPEIAVYPAFEAPPQYVLPTYEMAVKM 221


>ref|NP_991371.1| similar to lysosomal associated protein transmembrane 4 beta [Bos
           taurus]
          Length = 226

 Score =  166 bits (421), Expect = 3e-41
 Identities = 87/208 (41%), Positives = 120/208 (57%), Gaps = 2/208 (0%)
 Frame = +1

Query: 211 RFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSVPAVNIQYEVIGNYYS 390
           RFYS  CC CCHVRTGTI+LG WY+++N ++ ++L   +  P+     +   E+ G++  
Sbjct: 9   RFYSNSCCLCCHVRTGTILLGVWYLILNAVVLLILLSALADPDHYHFSSS--ELGGDF-- 64

Query: 391 SERMAD-NACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSL 567
            E M D N C+  A+SVLM +I +M  YGA   +  W+IPFFCY++FDF L+ LVA++ L
Sbjct: 65  -EFMDDANMCIAIAISVLMILICAMATYGAYKQRAAWIIPFFCYQIFDFALNTLVAVTVL 123

Query: 568 TYLPRIKEYLDQL-PDFPYKXXXXXXXXXXXXXXXXXXXXXXXXXKAYLINCVWNCYKYI 744
            Y   I+EY+ QL PDFPYK                         K YLI+CVWNCY+YI
Sbjct: 124 VYPNSIQEYIRQLPPDFPYKDDIMSVNPTCLVLIILLFISIILAFKGYLISCVWNCYRYI 183

Query: 745 NNRNMPEIAVYPAFEAPPQYVLPTYEMA 828
           N RN  ++ VY         +LP Y+ A
Sbjct: 184 NGRNSSDVLVY-VTSNDSTVLLPPYDDA 210


>ref|XP_602449.2| PREDICTED: similar to lysosomal-associated protein transmembrane 4B
           (predicted) [Bos taurus]
          Length = 185

 Score =  123 bits (309), Expect = 3e-28
 Identities = 66/175 (37%), Positives = 92/175 (52%), Gaps = 2/175 (1%)
 Frame = +1

Query: 259 TIILGTWYMVVNLLMAILLTVEVTHPNSVPAVNIQYEVIGNYYSSERMAD-NACVLFAVS 435
           TI+LG WY++VN ++ ++L   +  P        + E+ G++   E M D N C+   +S
Sbjct: 8   TILLGVWYLIVNAVVLLILLNTLADPYHYHFS--RSELRGDF---EFMDDANMCIAIVIS 62

Query: 436 VLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIKEYLDQL-PD 612
            LM +I +M  YGA      W+IPFFCYR+FDF L+ LV ++ L Y   I+EY  QL PD
Sbjct: 63  FLMILICAMATYGAYKQHAAWIIPFFCYRIFDFALNTLVVVTILVYPNSIQEYTRQLPPD 122

Query: 613 FPYKXXXXXXXXXXXXXXXXXXXXXXXXXKAYLINCVWNCYKYINNRNMPEIAVY 777
            PYK                         K YLI+CVWNCY+Y   RN  ++ VY
Sbjct: 123 IPYKDDIMSVNPTCLVLVILLFISIILAFKGYLISCVWNCYRYTTGRNSSDVLVY 177


>ref|XP_589869.2| PREDICTED: similar to Lysosomal-associated multitransmembrane
           protein (Retinoic acid-inducible E3 protein) (HA1520)
           [Bos taurus]
          Length = 264

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 31/116 (26%), Positives = 60/116 (51%)
 Frame = +1

Query: 232 CGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSVPAVNIQYEVIGNYYSSERMADN 411
           C C +VR  T  L  +++++++L+ I  +VEV H  +    + ++   G    +E ++  
Sbjct: 12  CCCFNVRIATTALAIYHVIMSVLLFIEHSVEVAHGKA----SCKFSKTGYLRIAELVSS- 66

Query: 412 ACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLP 579
               F +  ++FIIS  L+ G +  +  +L+PF   ++ DF+L  L  + S   LP
Sbjct: 67  ----FLLITMLFIISLSLLVGVVKNREKYLLPFLSLQIMDFLLCLLTLMGSYIELP 118


  Database: RefSeqBP
    Posted date:  Aug 1, 2006  7:14 PM
  Number of letters in database: 16,112,626
  Number of sequences in database:  33,508
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,127,918
Number of Sequences: 33508
Number of extensions: 1145947
Number of successful extensions: 3459
Number of sequences better than 1.0e-05: 4
Number of HSP's better than  0.0 without gapping: 3057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3451
length of database: 16,112,626
effective HSP length: 105
effective length of database: 12,594,286
effective search space used: 4685074392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqCP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= LVRM1_0154_C03
         (1434 letters)

Database: RefSeqCP 
           33,732 sequences; 19,266,565 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_532885.1| PREDICTED: similar to lysosomal-associated prot...   399   e-111
Alignment   gi|XP_532277.2| PREDICTED: similar to lysosomal-associated tran...   162   8e-40
Alignment   gi|XP_544450.2| PREDICTED: similar to Lysosomal-associated mult...    58   2e-08

>ref|XP_532885.1| PREDICTED: similar to lysosomal-associated protein transmembrane 4
           alpha [Canis familiaris]
          Length = 233

 Score =  399 bits (1024), Expect = e-111
 Identities = 195/221 (88%), Positives = 196/221 (88%)
 Frame = +1

Query: 175 MVSMTFKRSRSDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSVPAV 354
           MVSMTFKRSRSDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNS+PAV
Sbjct: 1   MVSMTFKRSRSDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSMPAV 60

Query: 355 NIQYEVIGNYYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDF 534
           NIQYEVIGNYYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDF
Sbjct: 61  NIQYEVIGNYYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDF 120

Query: 535 VLSCLVAISSLTYLPRIKEYLDQLPDFPYKXXXXXXXXXXXXXXXXXXXXXXXXXKAYLI 714
           VLSCLVAISSLTYLPRIKEYLDQLPDFPYK                         KAYLI
Sbjct: 121 VLSCLVAISSLTYLPRIKEYLDQLPDFPYKDDLLALDSSCLLFIVLVFFALFIIFKAYLI 180

Query: 715 NCVWNCYKYINNRNMPEIAVYPAFEAPPQYVLPTYEMAVKM 837
           NCVWNCYKYINNRNMPEIAVYPAFEAPPQYVLPTYEMAVKM
Sbjct: 181 NCVWNCYKYINNRNMPEIAVYPAFEAPPQYVLPTYEMAVKM 221


>ref|XP_532277.2| PREDICTED: similar to lysosomal-associated transmembrane protein 4
           beta [Canis familiaris]
          Length = 393

 Score =  162 bits (410), Expect = 8e-40
 Identities = 84/214 (39%), Positives = 119/214 (55%), Gaps = 8/214 (3%)
 Frame = +1

Query: 211 RFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSVPAVNIQYEVIGNYYS 390
           RFYS+ CC CCHVRTG I+LG WY+++N ++ ++L   +  P+       QY    ++ S
Sbjct: 176 RFYSSSCCLCCHVRTGAILLGVWYLIINAVVLLILLSALADPD-------QY----HFSS 224

Query: 391 SERMAD-------NACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCL 549
           SE   D       N C+  A+S+LM +I +M  YGA   +  W+IPFFCY++FDF L+ L
Sbjct: 225 SELGGDFEFMDDANMCIAIAISLLMILICAMATYGAYKQRAAWIIPFFCYQIFDFALNTL 284

Query: 550 VAISSLTYLPRIKEYLDQL-PDFPYKXXXXXXXXXXXXXXXXXXXXXXXXXKAYLINCVW 726
           VA++ L Y   I+EY+ QL P+FPY+                         K YLI+CVW
Sbjct: 285 VAVTVLVYPNSIQEYIRQLPPNFPYRDDIMSVNPTCLVLIILLFISIILTFKGYLISCVW 344

Query: 727 NCYKYINNRNMPEIAVYPAFEAPPQYVLPTYEMA 828
           NCY+YIN RN  ++ VY         +LP Y+ A
Sbjct: 345 NCYRYINGRNSSDVLVY-VTSNDTTVLLPPYDDA 377


>ref|XP_544450.2| PREDICTED: similar to Lysosomal-associated multitransmembrane
           protein (Retinoic acid-inducible E3 protein) (HA1520)
           [Canis familiaris]
          Length = 262

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 54/246 (21%), Positives = 90/246 (36%), Gaps = 44/246 (17%)
 Frame = +1

Query: 232 CGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSVPAV-NIQYEVIGNYYSSERMAD 408
           C C +VR  T  L  +++++++L+     VEV H  +   V    Y  + N  SS     
Sbjct: 12  CCCFNVRIATTALAIYHVIMSVLLFTEHLVEVVHGKASCKVWRTGYLRLANLISS----- 66

Query: 409 NACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIK 588
                F + +++F+IS  L+ G +  +  +L+PF   ++ DF+L  L  + S   LP   
Sbjct: 67  -----FLLIIMLFVISLSLLIGVVKNREKYLLPFLSLQIMDFLLCLLTLLGSYIELPAYL 121

Query: 589 EYLD--------------QLPDF-----------------------------PYKXXXXX 639
           ++                QL DF                             P +     
Sbjct: 122 KFASRSSRGPSKVPLMTLQLLDFCLSILTLCSSYMEVPTYLNFKAMNHMNYIPSQEGVAH 181

Query: 640 XXXXXXXXXXXXXXXXXXXXKAYLINCVWNCYKYINNRNMPEIAVYPAFEAPPQYVLPTY 819
                               K Y+  CVW CYK +   N  E     + +  P+ VLP+Y
Sbjct: 182 SQFIKMMIIFSIAFITVLILKVYMFKCVWRCYKLMKYMNSAE--ENSSSKMLPKVVLPSY 239

Query: 820 EMAVKM 837
           E A+ +
Sbjct: 240 EEALSL 245


  Database: RefSeqCP
    Posted date:  Aug 1, 2006  9:25 PM
  Number of letters in database: 19,266,565
  Number of sequences in database:  33,732
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,261,261
Number of Sequences: 33732
Number of extensions: 1349412
Number of successful extensions: 4248
Number of sequences better than 1.0e-05: 3
Number of HSP's better than  0.0 without gapping: 3702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4238
length of database: 19,266,565
effective HSP length: 107
effective length of database: 15,657,241
effective search space used: 5793179170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqSP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= LVRM1_0154_C03
         (1434 letters)

Database: RefSeqSP 
           1040 sequences; 434,620 total letters

Searching...done

 ***** No hits found ******

  Database: RefSeqSP
    Posted date:  Aug 1, 2006  7:14 PM
  Number of letters in database: 434,620
  Number of sequences in database:  1040
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,266,245
Number of Sequences: 1040
Number of extensions: 31036
Number of successful extensions: 88
Number of sequences better than 1.0e-05: 0
Number of HSP's better than  0.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 434,620
effective HSP length: 80
effective length of database: 351,420
effective search space used: 139513740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqHP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= LVRM1_0154_C03
         (1434 letters)

Database: RefSeqHP 
           39,411 sequences; 17,774,539 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_055528.1| lysosomal-associated protein transmembrane 4 al...   394   e-110
Alignment   gi|NP_060877.3| lysosomal associated transmembrane protein 4 be...   166   6e-41
Alignment   gi|NP_006753.1| Lysosomal associated multispanning membrane pro...    50   4e-06

>ref|NP_055528.1| lysosomal-associated protein transmembrane 4 alpha [Homo sapiens]
          Length = 233

 Score =  394 bits (1013), Expect = e-110
 Identities = 192/221 (86%), Positives = 196/221 (88%)
 Frame = +1

Query: 175 MVSMTFKRSRSDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSVPAV 354
           MVSM+FKR+RSDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNS+PAV
Sbjct: 1   MVSMSFKRNRSDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSMPAV 60

Query: 355 NIQYEVIGNYYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDF 534
           NIQYEVIGNYYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDF
Sbjct: 61  NIQYEVIGNYYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDF 120

Query: 535 VLSCLVAISSLTYLPRIKEYLDQLPDFPYKXXXXXXXXXXXXXXXXXXXXXXXXXKAYLI 714
           VLSCLVAISSLTYLPRIKEYLDQLPDFPYK                         KAYLI
Sbjct: 121 VLSCLVAISSLTYLPRIKEYLDQLPDFPYKDDLLALDSSCLLFIVLVFFALFIIFKAYLI 180

Query: 715 NCVWNCYKYINNRNMPEIAVYPAFEAPPQYVLPTYEMAVKM 837
           NCVWNCYKYINNRN+PEIAVYPAFEAPPQYVLPTYEMAVKM
Sbjct: 181 NCVWNCYKYINNRNVPEIAVYPAFEAPPQYVLPTYEMAVKM 221


>ref|NP_060877.3| lysosomal associated transmembrane protein 4 beta [Homo sapiens]
          Length = 317

 Score =  166 bits (419), Expect = 6e-41
 Identities = 87/214 (40%), Positives = 119/214 (55%), Gaps = 8/214 (3%)
 Frame = +1

Query: 211 RFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSVPAVNIQYEVIGNYYS 390
           RFYS  CC CCHVRTGTI+LG WY+++N ++ ++L   +  P+       QY    N+ S
Sbjct: 100 RFYSNSCCLCCHVRTGTILLGVWYLIINAVVLLILLSALADPD-------QY----NFSS 148

Query: 391 SERMAD-------NACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCL 549
           SE   D       N C+  A+S+LM +I +M  YGA   +  W+IPFFCY++FDF L+ L
Sbjct: 149 SELGGDFEFMDDANMCIAIAISLLMILICAMATYGAYKQRAAWIIPFFCYQIFDFALNML 208

Query: 550 VAISSLTYLPRIKEYLDQL-PDFPYKXXXXXXXXXXXXXXXXXXXXXXXXXKAYLINCVW 726
           VAI+ L Y   I+EY+ QL P+FPY+                         K YLI+CVW
Sbjct: 209 VAITVLIYPNSIQEYIRQLPPNFPYRDDVMSVNPTCLVLIILLFISIILTFKGYLISCVW 268

Query: 727 NCYKYINNRNMPEIAVYPAFEAPPQYVLPTYEMA 828
           NCY+YIN RN  ++ VY         +LP Y+ A
Sbjct: 269 NCYRYINGRNSSDVLVY-VTSNDTTVLLPPYDDA 301


>ref|NP_006753.1| Lysosomal associated multispanning membrane protein 5 [Homo
           sapiens]
          Length = 262

 Score = 50.4 bits (119), Expect = 4e-06
 Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
 Frame = +1

Query: 232 CGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPN-SVPAVNIQYEVIGNYYSSERMAD 408
           C C +VR  T  L  +++++++L+ I  +VEV H   S     + Y  I +  SS     
Sbjct: 12  CCCFNVRIATTALAIYHVIMSVLLFIEHSVEVAHGKASCKLSQMGYLRIADLISS----- 66

Query: 409 NACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLP 579
                F +  ++FIIS  L+ G +  +  +L+PF   ++ D++L  L  + S   LP
Sbjct: 67  -----FLLITMLFIISLSLLIGVVKNREKYLLPFLSLQIMDYLLCLLTLLGSYIELP 118


  Database: RefSeqHP
    Posted date:  Aug 2, 2006 12:57 AM
  Number of letters in database: 17,774,539
  Number of sequences in database:  39,411
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,017,926
Number of Sequences: 39411
Number of extensions: 1328715
Number of successful extensions: 4292
Number of sequences better than 1.0e-05: 3
Number of HSP's better than  0.0 without gapping: 3739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4284
length of database: 17,774,539
effective HSP length: 106
effective length of database: 13,596,973
effective search space used: 5044476983
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqMP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= LVRM1_0154_C03
         (1434 letters)

Database: RefSeqMP 
           45,328 sequences; 21,768,885 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_032666.2| lysosomal-associated protein transmembrane 4A [...   435   e-122
Alignment   gi|NP_277056.1| lysosomal-associated protein transmembrane 4B [...   164   3e-40
Alignment   gi|XP_978299.1| PREDICTED: similar to Lysosomal-associated mult...    52   2e-06
Alignment   gi|XP_989191.1| PREDICTED: similar to Lysosomal-associated mult...    51   3e-06
Alignment   gi|NP_034816.1| lysosomal-associated protein transmembrane 5 [M...    51   3e-06
Alignment   gi|XP_978422.1| PREDICTED: similar to Lysosomal-associated mult...    51   3e-06
Alignment   gi|XP_978385.1| PREDICTED: similar to Lysosomal-associated mult...    51   3e-06

>ref|NP_032666.2| lysosomal-associated protein transmembrane 4A [Mus musculus]
          Length = 308

 Score =  435 bits (1118), Expect = e-122
 Identities = 214/258 (82%), Positives = 219/258 (84%)
 Frame = +1

Query: 64  EDASFGFGRFERAVWYQPLGGRRLSGARPRTRPTSFPMVSMTFKRSRSDRFYSTRCCGCC 243
           EDASFG G   R VW +PLG + LSGA  RTRP  F MVSMTFKRSRSDRFYSTRCCGCC
Sbjct: 39  EDASFGCGHRRRVVWVEPLGRKLLSGAWARTRPARFRMVSMTFKRSRSDRFYSTRCCGCC 98

Query: 244 HVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSVPAVNIQYEVIGNYYSSERMADNACVL 423
           HVRTGTIILGTWYMVVNLLMAILLTVEVTHPNS+PAVNIQYEVIGNYYSSERMADNACVL
Sbjct: 99  HVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSMPAVNIQYEVIGNYYSSERMADNACVL 158

Query: 424 FAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIKEYLDQ 603
           FAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIKEYLDQ
Sbjct: 159 FAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIKEYLDQ 218

Query: 604 LPDFPYKXXXXXXXXXXXXXXXXXXXXXXXXXKAYLINCVWNCYKYINNRNMPEIAVYPA 783
           LPDFPYK                         KAYLINCVWNCYKYINNRN+PEIAVYPA
Sbjct: 219 LPDFPYKDDLLALDSSCLLFIVLVFFVVFIIFKAYLINCVWNCYKYINNRNVPEIAVYPA 278

Query: 784 FEAPPQYVLPTYEMAVKM 837
           FE PPQYVLPTYEMAVK+
Sbjct: 279 FETPPQYVLPTYEMAVKI 296


>ref|NP_277056.1| lysosomal-associated protein transmembrane 4B [Mus musculus]
          Length = 227

 Score =  164 bits (414), Expect = 3e-40
 Identities = 86/210 (40%), Positives = 116/210 (55%), Gaps = 4/210 (1%)
 Frame = +1

Query: 211 RFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSVPAVNIQYEVIGNYYS 390
           RFYS  CC CCHVRTGTI+LG WY+++N ++ ++L   +  PN       QY   G+   
Sbjct: 9   RFYSHSCCLCCHVRTGTILLGVWYLIINAVVLLILLSALADPN-------QYHFSGSELG 61

Query: 391 SER--MAD-NACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAIS 561
            E   M D N C+  A+S+LM +I +M  YGA      W+IPFFCY++FDF L+ LVAI+
Sbjct: 62  GEFEFMDDANMCIAIAISLLMILICAMATYGAYKQHAAWIIPFFCYQIFDFALNTLVAIT 121

Query: 562 SLTYLPRIKEYLDQL-PDFPYKXXXXXXXXXXXXXXXXXXXXXXXXXKAYLINCVWNCYK 738
            L Y   I+EY+ QL P FPY+                         K YLI+CVW+CY+
Sbjct: 122 VLVYPNSIQEYIRQLPPSFPYRDDIMSVNPTCLVLIILLFIGILLTLKGYLISCVWSCYR 181

Query: 739 YINNRNMPEIAVYPAFEAPPQYVLPTYEMA 828
           YIN RN  ++ VY         +LP Y+ A
Sbjct: 182 YINGRNSSDVLVY-VTSNDTTVLLPPYDDA 210


>ref|XP_978299.1| PREDICTED: similar to Lysosomal-associated multitransmembrane
           protein (Retinoic acid-inducible E3 protein) isoform 2
           [Mus musculus]
          Length = 271

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
 Frame = +1

Query: 232 CGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPN-SVPAVNIQYEVIGNYYSSERMAD 408
           C C ++R  TI L  +++V+++L+ I   VEV     S     + Y  +    S   +A 
Sbjct: 12  CCCFNIRVATIALAIYHIVMSVLLFIEHVVEVARGKVSCRFFKMPYLRMALPQSLPCLAA 71

Query: 409 NACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLP 579
           +    F +  ++FIIS  L++G +  +  +LIPF   ++ DF+L  L  + S   LP
Sbjct: 72  DLLSSFLLIGVLFIISISLLFGVVKNREKYLIPFLSLQIMDFLLCLLTLLGSYIELP 128


>ref|XP_989191.1| PREDICTED: similar to Lysosomal-associated multitransmembrane
           protein (Retinoic acid-inducible E3 protein) [Mus
           musculus]
          Length = 252

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
 Frame = +1

Query: 232 CGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPN-SVPAVNIQYEVIGNYYSSERMAD 408
           C C ++R  TI L  +++V+++L+ I   VEV     S     + Y          RMAD
Sbjct: 12  CCCFNIRVATIALAIYHIVMSVLLFIEHVVEVARGKVSCRFFKMPYL---------RMAD 62

Query: 409 NACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLP 579
                  + VL FIIS  L++G +  +  +LIPF   ++ DF+L  L  + S   LP
Sbjct: 63  LLSSFLLIGVL-FIISISLLFGVVKNREKYLIPFLSLQIMDFLLCLLTLLGSYIELP 118


>ref|NP_034816.1| lysosomal-associated protein transmembrane 5 [Mus musculus]
          Length = 261

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
 Frame = +1

Query: 232 CGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPN-SVPAVNIQYEVIGNYYSSERMAD 408
           C C ++R  TI L  +++V+++L+ I   VEV     S     + Y          RMAD
Sbjct: 12  CCCFNIRVATIALAIYHIVMSVLLFIEHVVEVARGKVSCRFFKMPYL---------RMAD 62

Query: 409 NACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLP 579
                  + VL FIIS  L++G +  +  +LIPF   ++ DF+L  L  + S   LP
Sbjct: 63  LLSSFLLIGVL-FIISISLLFGVVKNREKYLIPFLSLQIMDFLLCLLTLLGSYIELP 118


>ref|XP_978422.1| PREDICTED: similar to Lysosomal-associated multitransmembrane
           protein (Retinoic acid-inducible E3 protein) isoform 5
           [Mus musculus]
          Length = 261

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
 Frame = +1

Query: 232 CGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPN-SVPAVNIQYEVIGNYYSSERMAD 408
           C C ++R  TI L  +++V+++L+ I   VEV     S     + Y          RMAD
Sbjct: 12  CCCFNIRVATIALAIYHIVMSVLLFIEHVVEVARGKVSCRFFKMPYL---------RMAD 62

Query: 409 NACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLP 579
                  + VL FIIS  L++G +  +  +LIPF   ++ DF+L  L  + S   LP
Sbjct: 63  LLSSFLLIGVL-FIISISLLFGVVKNREKYLIPFLSLQIMDFLLCLLTLLGSYIELP 118


>ref|XP_978385.1| PREDICTED: similar to Lysosomal-associated multitransmembrane
           protein (Retinoic acid-inducible E3 protein) isoform 4
           [Mus musculus]
          Length = 261

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
 Frame = +1

Query: 232 CGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPN-SVPAVNIQYEVIGNYYSSERMAD 408
           C C ++R  TI L  +++V+++L+ I   VEV     S     + Y          RMAD
Sbjct: 12  CCCFNIRVATIALAIYHIVMSVLLFIEHVVEVARGKVSCRFFKMPYL---------RMAD 62

Query: 409 NACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLP 579
                  + VL FIIS  L++G +  +  +LIPF   ++ DF+L  L  + S   LP
Sbjct: 63  LLSSFLLIGVL-FIISISLLFGVVKNREKYLIPFLSLQIMDFLLCLLTLLGSYIELP 118


  Database: RefSeqMP
    Posted date:  Aug 2, 2006 12:58 AM
  Number of letters in database: 21,768,885
  Number of sequences in database:  45,328
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,414,415
Number of Sequences: 45328
Number of extensions: 1551300
Number of successful extensions: 4599
Number of sequences better than 1.0e-05: 7
Number of HSP's better than  0.0 without gapping: 4000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4574
length of database: 21,768,885
effective HSP length: 107
effective length of database: 16,918,789
effective search space used: 6259951930
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)