Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LVRM1_0154_C03
(1434 letters)
Database: RefSeqBP
33,508 sequences; 16,112,626 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_991368.1| lysosomal-associated protein transmembrane 4 al... 399 e-111
Alignment gi|NP_991371.1| similar to lysosomal associated protein transme... 166 3e-41
Alignment gi|XP_602449.2| PREDICTED: similar to lysosomal-associated prot... 123 3e-28
Alignment gi|XP_589869.2| PREDICTED: similar to Lysosomal-associated mult... 51 3e-06
>ref|NP_991368.1| lysosomal-associated protein transmembrane 4 alpha [Bos taurus]
Length = 233
Score = 399 bits (1024), Expect = e-111
Identities = 195/221 (88%), Positives = 196/221 (88%)
Frame = +1
Query: 175 MVSMTFKRSRSDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSVPAV 354
MVSMTFKRSRSDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNS+PAV
Sbjct: 1 MVSMTFKRSRSDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSMPAV 60
Query: 355 NIQYEVIGNYYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDF 534
NIQYEVIGNYYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDF
Sbjct: 61 NIQYEVIGNYYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDF 120
Query: 535 VLSCLVAISSLTYLPRIKEYLDQLPDFPYKXXXXXXXXXXXXXXXXXXXXXXXXXKAYLI 714
VLSCLVAISSLTYLPRIKEYLDQLPDFPYK KAYLI
Sbjct: 121 VLSCLVAISSLTYLPRIKEYLDQLPDFPYKDDLLALDSSCLLFIVLVFFALFIIFKAYLI 180
Query: 715 NCVWNCYKYINNRNMPEIAVYPAFEAPPQYVLPTYEMAVKM 837
NCVWNCYKYINNRNMPEIAVYPAFEAPPQYVLPTYEMAVKM
Sbjct: 181 NCVWNCYKYINNRNMPEIAVYPAFEAPPQYVLPTYEMAVKM 221
>ref|NP_991371.1| similar to lysosomal associated protein transmembrane 4 beta [Bos
taurus]
Length = 226
Score = 166 bits (421), Expect = 3e-41
Identities = 87/208 (41%), Positives = 120/208 (57%), Gaps = 2/208 (0%)
Frame = +1
Query: 211 RFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSVPAVNIQYEVIGNYYS 390
RFYS CC CCHVRTGTI+LG WY+++N ++ ++L + P+ + E+ G++
Sbjct: 9 RFYSNSCCLCCHVRTGTILLGVWYLILNAVVLLILLSALADPDHYHFSSS--ELGGDF-- 64
Query: 391 SERMAD-NACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSL 567
E M D N C+ A+SVLM +I +M YGA + W+IPFFCY++FDF L+ LVA++ L
Sbjct: 65 -EFMDDANMCIAIAISVLMILICAMATYGAYKQRAAWIIPFFCYQIFDFALNTLVAVTVL 123
Query: 568 TYLPRIKEYLDQL-PDFPYKXXXXXXXXXXXXXXXXXXXXXXXXXKAYLINCVWNCYKYI 744
Y I+EY+ QL PDFPYK K YLI+CVWNCY+YI
Sbjct: 124 VYPNSIQEYIRQLPPDFPYKDDIMSVNPTCLVLIILLFISIILAFKGYLISCVWNCYRYI 183
Query: 745 NNRNMPEIAVYPAFEAPPQYVLPTYEMA 828
N RN ++ VY +LP Y+ A
Sbjct: 184 NGRNSSDVLVY-VTSNDSTVLLPPYDDA 210
>ref|XP_602449.2| PREDICTED: similar to lysosomal-associated protein transmembrane 4B
(predicted) [Bos taurus]
Length = 185
Score = 123 bits (309), Expect = 3e-28
Identities = 66/175 (37%), Positives = 92/175 (52%), Gaps = 2/175 (1%)
Frame = +1
Query: 259 TIILGTWYMVVNLLMAILLTVEVTHPNSVPAVNIQYEVIGNYYSSERMAD-NACVLFAVS 435
TI+LG WY++VN ++ ++L + P + E+ G++ E M D N C+ +S
Sbjct: 8 TILLGVWYLIVNAVVLLILLNTLADPYHYHFS--RSELRGDF---EFMDDANMCIAIVIS 62
Query: 436 VLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIKEYLDQL-PD 612
LM +I +M YGA W+IPFFCYR+FDF L+ LV ++ L Y I+EY QL PD
Sbjct: 63 FLMILICAMATYGAYKQHAAWIIPFFCYRIFDFALNTLVVVTILVYPNSIQEYTRQLPPD 122
Query: 613 FPYKXXXXXXXXXXXXXXXXXXXXXXXXXKAYLINCVWNCYKYINNRNMPEIAVY 777
PYK K YLI+CVWNCY+Y RN ++ VY
Sbjct: 123 IPYKDDIMSVNPTCLVLVILLFISIILAFKGYLISCVWNCYRYTTGRNSSDVLVY 177
>ref|XP_589869.2| PREDICTED: similar to Lysosomal-associated multitransmembrane
protein (Retinoic acid-inducible E3 protein) (HA1520)
[Bos taurus]
Length = 264
Score = 50.8 bits (120), Expect = 3e-06
Identities = 31/116 (26%), Positives = 60/116 (51%)
Frame = +1
Query: 232 CGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSVPAVNIQYEVIGNYYSSERMADN 411
C C +VR T L +++++++L+ I +VEV H + + ++ G +E ++
Sbjct: 12 CCCFNVRIATTALAIYHVIMSVLLFIEHSVEVAHGKA----SCKFSKTGYLRIAELVSS- 66
Query: 412 ACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLP 579
F + ++FIIS L+ G + + +L+PF ++ DF+L L + S LP
Sbjct: 67 ----FLLITMLFIISLSLLVGVVKNREKYLLPFLSLQIMDFLLCLLTLMGSYIELP 118
Database: RefSeqBP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 16,112,626
Number of sequences in database: 33,508
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,127,918
Number of Sequences: 33508
Number of extensions: 1145947
Number of successful extensions: 3459
Number of sequences better than 1.0e-05: 4
Number of HSP's better than 0.0 without gapping: 3057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3451
length of database: 16,112,626
effective HSP length: 105
effective length of database: 12,594,286
effective search space used: 4685074392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LVRM1_0154_C03
(1434 letters)
Database: RefSeqCP
33,732 sequences; 19,266,565 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532885.1| PREDICTED: similar to lysosomal-associated prot... 399 e-111
Alignment gi|XP_532277.2| PREDICTED: similar to lysosomal-associated tran... 162 8e-40
Alignment gi|XP_544450.2| PREDICTED: similar to Lysosomal-associated mult... 58 2e-08
>ref|XP_532885.1| PREDICTED: similar to lysosomal-associated protein transmembrane 4
alpha [Canis familiaris]
Length = 233
Score = 399 bits (1024), Expect = e-111
Identities = 195/221 (88%), Positives = 196/221 (88%)
Frame = +1
Query: 175 MVSMTFKRSRSDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSVPAV 354
MVSMTFKRSRSDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNS+PAV
Sbjct: 1 MVSMTFKRSRSDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSMPAV 60
Query: 355 NIQYEVIGNYYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDF 534
NIQYEVIGNYYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDF
Sbjct: 61 NIQYEVIGNYYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDF 120
Query: 535 VLSCLVAISSLTYLPRIKEYLDQLPDFPYKXXXXXXXXXXXXXXXXXXXXXXXXXKAYLI 714
VLSCLVAISSLTYLPRIKEYLDQLPDFPYK KAYLI
Sbjct: 121 VLSCLVAISSLTYLPRIKEYLDQLPDFPYKDDLLALDSSCLLFIVLVFFALFIIFKAYLI 180
Query: 715 NCVWNCYKYINNRNMPEIAVYPAFEAPPQYVLPTYEMAVKM 837
NCVWNCYKYINNRNMPEIAVYPAFEAPPQYVLPTYEMAVKM
Sbjct: 181 NCVWNCYKYINNRNMPEIAVYPAFEAPPQYVLPTYEMAVKM 221
>ref|XP_532277.2| PREDICTED: similar to lysosomal-associated transmembrane protein 4
beta [Canis familiaris]
Length = 393
Score = 162 bits (410), Expect = 8e-40
Identities = 84/214 (39%), Positives = 119/214 (55%), Gaps = 8/214 (3%)
Frame = +1
Query: 211 RFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSVPAVNIQYEVIGNYYS 390
RFYS+ CC CCHVRTG I+LG WY+++N ++ ++L + P+ QY ++ S
Sbjct: 176 RFYSSSCCLCCHVRTGAILLGVWYLIINAVVLLILLSALADPD-------QY----HFSS 224
Query: 391 SERMAD-------NACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCL 549
SE D N C+ A+S+LM +I +M YGA + W+IPFFCY++FDF L+ L
Sbjct: 225 SELGGDFEFMDDANMCIAIAISLLMILICAMATYGAYKQRAAWIIPFFCYQIFDFALNTL 284
Query: 550 VAISSLTYLPRIKEYLDQL-PDFPYKXXXXXXXXXXXXXXXXXXXXXXXXXKAYLINCVW 726
VA++ L Y I+EY+ QL P+FPY+ K YLI+CVW
Sbjct: 285 VAVTVLVYPNSIQEYIRQLPPNFPYRDDIMSVNPTCLVLIILLFISIILTFKGYLISCVW 344
Query: 727 NCYKYINNRNMPEIAVYPAFEAPPQYVLPTYEMA 828
NCY+YIN RN ++ VY +LP Y+ A
Sbjct: 345 NCYRYINGRNSSDVLVY-VTSNDTTVLLPPYDDA 377
>ref|XP_544450.2| PREDICTED: similar to Lysosomal-associated multitransmembrane
protein (Retinoic acid-inducible E3 protein) (HA1520)
[Canis familiaris]
Length = 262
Score = 58.2 bits (139), Expect = 2e-08
Identities = 54/246 (21%), Positives = 90/246 (36%), Gaps = 44/246 (17%)
Frame = +1
Query: 232 CGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSVPAV-NIQYEVIGNYYSSERMAD 408
C C +VR T L +++++++L+ VEV H + V Y + N SS
Sbjct: 12 CCCFNVRIATTALAIYHVIMSVLLFTEHLVEVVHGKASCKVWRTGYLRLANLISS----- 66
Query: 409 NACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIK 588
F + +++F+IS L+ G + + +L+PF ++ DF+L L + S LP
Sbjct: 67 -----FLLIIMLFVISLSLLIGVVKNREKYLLPFLSLQIMDFLLCLLTLLGSYIELPAYL 121
Query: 589 EYLD--------------QLPDF-----------------------------PYKXXXXX 639
++ QL DF P +
Sbjct: 122 KFASRSSRGPSKVPLMTLQLLDFCLSILTLCSSYMEVPTYLNFKAMNHMNYIPSQEGVAH 181
Query: 640 XXXXXXXXXXXXXXXXXXXXKAYLINCVWNCYKYINNRNMPEIAVYPAFEAPPQYVLPTY 819
K Y+ CVW CYK + N E + + P+ VLP+Y
Sbjct: 182 SQFIKMMIIFSIAFITVLILKVYMFKCVWRCYKLMKYMNSAE--ENSSSKMLPKVVLPSY 239
Query: 820 EMAVKM 837
E A+ +
Sbjct: 240 EEALSL 245
Database: RefSeqCP
Posted date: Aug 1, 2006 9:25 PM
Number of letters in database: 19,266,565
Number of sequences in database: 33,732
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,261,261
Number of Sequences: 33732
Number of extensions: 1349412
Number of successful extensions: 4248
Number of sequences better than 1.0e-05: 3
Number of HSP's better than 0.0 without gapping: 3702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4238
length of database: 19,266,565
effective HSP length: 107
effective length of database: 15,657,241
effective search space used: 5793179170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqSP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LVRM1_0154_C03
(1434 letters)
Database: RefSeqSP
1040 sequences; 434,620 total letters
Searching...done
***** No hits found ******
Database: RefSeqSP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 434,620
Number of sequences in database: 1040
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,266,245
Number of Sequences: 1040
Number of extensions: 31036
Number of successful extensions: 88
Number of sequences better than 1.0e-05: 0
Number of HSP's better than 0.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 434,620
effective HSP length: 80
effective length of database: 351,420
effective search space used: 139513740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LVRM1_0154_C03
(1434 letters)
Database: RefSeqHP
39,411 sequences; 17,774,539 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055528.1| lysosomal-associated protein transmembrane 4 al... 394 e-110
Alignment gi|NP_060877.3| lysosomal associated transmembrane protein 4 be... 166 6e-41
Alignment gi|NP_006753.1| Lysosomal associated multispanning membrane pro... 50 4e-06
>ref|NP_055528.1| lysosomal-associated protein transmembrane 4 alpha [Homo sapiens]
Length = 233
Score = 394 bits (1013), Expect = e-110
Identities = 192/221 (86%), Positives = 196/221 (88%)
Frame = +1
Query: 175 MVSMTFKRSRSDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSVPAV 354
MVSM+FKR+RSDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNS+PAV
Sbjct: 1 MVSMSFKRNRSDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSMPAV 60
Query: 355 NIQYEVIGNYYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDF 534
NIQYEVIGNYYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDF
Sbjct: 61 NIQYEVIGNYYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDF 120
Query: 535 VLSCLVAISSLTYLPRIKEYLDQLPDFPYKXXXXXXXXXXXXXXXXXXXXXXXXXKAYLI 714
VLSCLVAISSLTYLPRIKEYLDQLPDFPYK KAYLI
Sbjct: 121 VLSCLVAISSLTYLPRIKEYLDQLPDFPYKDDLLALDSSCLLFIVLVFFALFIIFKAYLI 180
Query: 715 NCVWNCYKYINNRNMPEIAVYPAFEAPPQYVLPTYEMAVKM 837
NCVWNCYKYINNRN+PEIAVYPAFEAPPQYVLPTYEMAVKM
Sbjct: 181 NCVWNCYKYINNRNVPEIAVYPAFEAPPQYVLPTYEMAVKM 221
>ref|NP_060877.3| lysosomal associated transmembrane protein 4 beta [Homo sapiens]
Length = 317
Score = 166 bits (419), Expect = 6e-41
Identities = 87/214 (40%), Positives = 119/214 (55%), Gaps = 8/214 (3%)
Frame = +1
Query: 211 RFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSVPAVNIQYEVIGNYYS 390
RFYS CC CCHVRTGTI+LG WY+++N ++ ++L + P+ QY N+ S
Sbjct: 100 RFYSNSCCLCCHVRTGTILLGVWYLIINAVVLLILLSALADPD-------QY----NFSS 148
Query: 391 SERMAD-------NACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCL 549
SE D N C+ A+S+LM +I +M YGA + W+IPFFCY++FDF L+ L
Sbjct: 149 SELGGDFEFMDDANMCIAIAISLLMILICAMATYGAYKQRAAWIIPFFCYQIFDFALNML 208
Query: 550 VAISSLTYLPRIKEYLDQL-PDFPYKXXXXXXXXXXXXXXXXXXXXXXXXXKAYLINCVW 726
VAI+ L Y I+EY+ QL P+FPY+ K YLI+CVW
Sbjct: 209 VAITVLIYPNSIQEYIRQLPPNFPYRDDVMSVNPTCLVLIILLFISIILTFKGYLISCVW 268
Query: 727 NCYKYINNRNMPEIAVYPAFEAPPQYVLPTYEMA 828
NCY+YIN RN ++ VY +LP Y+ A
Sbjct: 269 NCYRYINGRNSSDVLVY-VTSNDTTVLLPPYDDA 301
>ref|NP_006753.1| Lysosomal associated multispanning membrane protein 5 [Homo
sapiens]
Length = 262
Score = 50.4 bits (119), Expect = 4e-06
Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Frame = +1
Query: 232 CGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPN-SVPAVNIQYEVIGNYYSSERMAD 408
C C +VR T L +++++++L+ I +VEV H S + Y I + SS
Sbjct: 12 CCCFNVRIATTALAIYHVIMSVLLFIEHSVEVAHGKASCKLSQMGYLRIADLISS----- 66
Query: 409 NACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLP 579
F + ++FIIS L+ G + + +L+PF ++ D++L L + S LP
Sbjct: 67 -----FLLITMLFIISLSLLIGVVKNREKYLLPFLSLQIMDYLLCLLTLLGSYIELP 118
Database: RefSeqHP
Posted date: Aug 2, 2006 12:57 AM
Number of letters in database: 17,774,539
Number of sequences in database: 39,411
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,017,926
Number of Sequences: 39411
Number of extensions: 1328715
Number of successful extensions: 4292
Number of sequences better than 1.0e-05: 3
Number of HSP's better than 0.0 without gapping: 3739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4284
length of database: 17,774,539
effective HSP length: 106
effective length of database: 13,596,973
effective search space used: 5044476983
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LVRM1_0154_C03
(1434 letters)
Database: RefSeqMP
45,328 sequences; 21,768,885 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032666.2| lysosomal-associated protein transmembrane 4A [... 435 e-122
Alignment gi|NP_277056.1| lysosomal-associated protein transmembrane 4B [... 164 3e-40
Alignment gi|XP_978299.1| PREDICTED: similar to Lysosomal-associated mult... 52 2e-06
Alignment gi|XP_989191.1| PREDICTED: similar to Lysosomal-associated mult... 51 3e-06
Alignment gi|NP_034816.1| lysosomal-associated protein transmembrane 5 [M... 51 3e-06
Alignment gi|XP_978422.1| PREDICTED: similar to Lysosomal-associated mult... 51 3e-06
Alignment gi|XP_978385.1| PREDICTED: similar to Lysosomal-associated mult... 51 3e-06
>ref|NP_032666.2| lysosomal-associated protein transmembrane 4A [Mus musculus]
Length = 308
Score = 435 bits (1118), Expect = e-122
Identities = 214/258 (82%), Positives = 219/258 (84%)
Frame = +1
Query: 64 EDASFGFGRFERAVWYQPLGGRRLSGARPRTRPTSFPMVSMTFKRSRSDRFYSTRCCGCC 243
EDASFG G R VW +PLG + LSGA RTRP F MVSMTFKRSRSDRFYSTRCCGCC
Sbjct: 39 EDASFGCGHRRRVVWVEPLGRKLLSGAWARTRPARFRMVSMTFKRSRSDRFYSTRCCGCC 98
Query: 244 HVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSVPAVNIQYEVIGNYYSSERMADNACVL 423
HVRTGTIILGTWYMVVNLLMAILLTVEVTHPNS+PAVNIQYEVIGNYYSSERMADNACVL
Sbjct: 99 HVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSMPAVNIQYEVIGNYYSSERMADNACVL 158
Query: 424 FAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIKEYLDQ 603
FAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIKEYLDQ
Sbjct: 159 FAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIKEYLDQ 218
Query: 604 LPDFPYKXXXXXXXXXXXXXXXXXXXXXXXXXKAYLINCVWNCYKYINNRNMPEIAVYPA 783
LPDFPYK KAYLINCVWNCYKYINNRN+PEIAVYPA
Sbjct: 219 LPDFPYKDDLLALDSSCLLFIVLVFFVVFIIFKAYLINCVWNCYKYINNRNVPEIAVYPA 278
Query: 784 FEAPPQYVLPTYEMAVKM 837
FE PPQYVLPTYEMAVK+
Sbjct: 279 FETPPQYVLPTYEMAVKI 296
>ref|NP_277056.1| lysosomal-associated protein transmembrane 4B [Mus musculus]
Length = 227
Score = 164 bits (414), Expect = 3e-40
Identities = 86/210 (40%), Positives = 116/210 (55%), Gaps = 4/210 (1%)
Frame = +1
Query: 211 RFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSVPAVNIQYEVIGNYYS 390
RFYS CC CCHVRTGTI+LG WY+++N ++ ++L + PN QY G+
Sbjct: 9 RFYSHSCCLCCHVRTGTILLGVWYLIINAVVLLILLSALADPN-------QYHFSGSELG 61
Query: 391 SER--MAD-NACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAIS 561
E M D N C+ A+S+LM +I +M YGA W+IPFFCY++FDF L+ LVAI+
Sbjct: 62 GEFEFMDDANMCIAIAISLLMILICAMATYGAYKQHAAWIIPFFCYQIFDFALNTLVAIT 121
Query: 562 SLTYLPRIKEYLDQL-PDFPYKXXXXXXXXXXXXXXXXXXXXXXXXXKAYLINCVWNCYK 738
L Y I+EY+ QL P FPY+ K YLI+CVW+CY+
Sbjct: 122 VLVYPNSIQEYIRQLPPSFPYRDDIMSVNPTCLVLIILLFIGILLTLKGYLISCVWSCYR 181
Query: 739 YINNRNMPEIAVYPAFEAPPQYVLPTYEMA 828
YIN RN ++ VY +LP Y+ A
Sbjct: 182 YINGRNSSDVLVY-VTSNDTTVLLPPYDDA 210
>ref|XP_978299.1| PREDICTED: similar to Lysosomal-associated multitransmembrane
protein (Retinoic acid-inducible E3 protein) isoform 2
[Mus musculus]
Length = 271
Score = 51.6 bits (122), Expect = 2e-06
Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Frame = +1
Query: 232 CGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPN-SVPAVNIQYEVIGNYYSSERMAD 408
C C ++R TI L +++V+++L+ I VEV S + Y + S +A
Sbjct: 12 CCCFNIRVATIALAIYHIVMSVLLFIEHVVEVARGKVSCRFFKMPYLRMALPQSLPCLAA 71
Query: 409 NACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLP 579
+ F + ++FIIS L++G + + +LIPF ++ DF+L L + S LP
Sbjct: 72 DLLSSFLLIGVLFIISISLLFGVVKNREKYLIPFLSLQIMDFLLCLLTLLGSYIELP 128
>ref|XP_989191.1| PREDICTED: similar to Lysosomal-associated multitransmembrane
protein (Retinoic acid-inducible E3 protein) [Mus
musculus]
Length = 252
Score = 51.2 bits (121), Expect = 3e-06
Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Frame = +1
Query: 232 CGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPN-SVPAVNIQYEVIGNYYSSERMAD 408
C C ++R TI L +++V+++L+ I VEV S + Y RMAD
Sbjct: 12 CCCFNIRVATIALAIYHIVMSVLLFIEHVVEVARGKVSCRFFKMPYL---------RMAD 62
Query: 409 NACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLP 579
+ VL FIIS L++G + + +LIPF ++ DF+L L + S LP
Sbjct: 63 LLSSFLLIGVL-FIISISLLFGVVKNREKYLIPFLSLQIMDFLLCLLTLLGSYIELP 118
>ref|NP_034816.1| lysosomal-associated protein transmembrane 5 [Mus musculus]
Length = 261
Score = 51.2 bits (121), Expect = 3e-06
Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Frame = +1
Query: 232 CGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPN-SVPAVNIQYEVIGNYYSSERMAD 408
C C ++R TI L +++V+++L+ I VEV S + Y RMAD
Sbjct: 12 CCCFNIRVATIALAIYHIVMSVLLFIEHVVEVARGKVSCRFFKMPYL---------RMAD 62
Query: 409 NACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLP 579
+ VL FIIS L++G + + +LIPF ++ DF+L L + S LP
Sbjct: 63 LLSSFLLIGVL-FIISISLLFGVVKNREKYLIPFLSLQIMDFLLCLLTLLGSYIELP 118
>ref|XP_978422.1| PREDICTED: similar to Lysosomal-associated multitransmembrane
protein (Retinoic acid-inducible E3 protein) isoform 5
[Mus musculus]
Length = 261
Score = 51.2 bits (121), Expect = 3e-06
Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Frame = +1
Query: 232 CGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPN-SVPAVNIQYEVIGNYYSSERMAD 408
C C ++R TI L +++V+++L+ I VEV S + Y RMAD
Sbjct: 12 CCCFNIRVATIALAIYHIVMSVLLFIEHVVEVARGKVSCRFFKMPYL---------RMAD 62
Query: 409 NACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLP 579
+ VL FIIS L++G + + +LIPF ++ DF+L L + S LP
Sbjct: 63 LLSSFLLIGVL-FIISISLLFGVVKNREKYLIPFLSLQIMDFLLCLLTLLGSYIELP 118
>ref|XP_978385.1| PREDICTED: similar to Lysosomal-associated multitransmembrane
protein (Retinoic acid-inducible E3 protein) isoform 4
[Mus musculus]
Length = 261
Score = 51.2 bits (121), Expect = 3e-06
Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Frame = +1
Query: 232 CGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPN-SVPAVNIQYEVIGNYYSSERMAD 408
C C ++R TI L +++V+++L+ I VEV S + Y RMAD
Sbjct: 12 CCCFNIRVATIALAIYHIVMSVLLFIEHVVEVARGKVSCRFFKMPYL---------RMAD 62
Query: 409 NACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLP 579
+ VL FIIS L++G + + +LIPF ++ DF+L L + S LP
Sbjct: 63 LLSSFLLIGVL-FIISISLLFGVVKNREKYLIPFLSLQIMDFLLCLLTLLGSYIELP 118
Database: RefSeqMP
Posted date: Aug 2, 2006 12:58 AM
Number of letters in database: 21,768,885
Number of sequences in database: 45,328
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,414,415
Number of Sequences: 45328
Number of extensions: 1551300
Number of successful extensions: 4599
Number of sequences better than 1.0e-05: 7
Number of HSP's better than 0.0 without gapping: 4000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4574
length of database: 21,768,885
effective HSP length: 107
effective length of database: 16,918,789
effective search space used: 6259951930
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)