Animal-Genome cDNA OVR01_0077_D07

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= OVR01_0077_D07
         (1883 letters)

Database: RefSeqBP 
           33,508 sequences; 16,112,626 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_776394.1| vimentin [Bos taurus]                                739   0.0  
Alignment   gi|XP_588095.2| PREDICTED: similar to desmin isoform 1 [Bos tau...   484   e-137
Alignment   gi|XP_882825.1| PREDICTED: similar to desmin isoform 4 [Bos tau...   473   e-133
Alignment   gi|XP_882781.1| PREDICTED: similar to desmin isoform 3 [Bos tau...   471   e-133
Alignment   gi|NP_776490.1| glial fibrillary acidic protein [Bos taurus]         454   e-127
Alignment   gi|XP_882737.1| PREDICTED: similar to desmin isoform 2 [Bos tau...   401   e-111
Alignment   gi|XP_610746.2| PREDICTED: similar to internexin neuronal inter...   346   4e-95
Alignment   gi|NP_776546.1| neurofilament, light polypeptide [Bos taurus]        320   2e-87
Alignment   gi|XP_587177.2| PREDICTED: similar to peripherin [Bos taurus]        315   8e-86
Alignment   gi|XP_582135.2| PREDICTED: similar to neurofilament 3, medium [...   311   1e-84

>ref|NP_776394.1| vimentin [Bos taurus]
          Length = 466

 Score =  739 bits (1908), Expect = 0.0
 Identities = 390/453 (86%), Positives = 396/453 (87%)
 Frame = +1

Query: 184  MFGGPGXXXXXXXXXXXXXXXXXXXXLGSALRPSTSRSLYTSSPGGVYATRSSAVRLRSS 363
            MFGGPG                    LGSALRP+TSR+LYTSSPGGVYATRSSAVRLRS 
Sbjct: 14   MFGGPGTASRPSSTRSYVTTSTRTYSLGSALRPTTSRTLYTSSPGGVYATRSSAVRLRSG 73

Query: 364  VPGVRLLQDAVDFSLADAINTEFKNTRTNEKVGLQELNDRFANYIDKVRFLEQQNKILLA 543
            VPGVRLLQD+VDFSLADAINTEFKNTRTNEKV LQELNDRFANYIDKVRFLEQQNKILLA
Sbjct: 74   VPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA 133

Query: 544  ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEET 723
            ELEQLKGQGKSRLG LYEEEMRELRRQVDQLTNDKAR EVER NLAEDIMRLREKLQEE 
Sbjct: 134  ELEQLKGQGKSRLGQLYEEEMRELRRQVDQLTNDKARAEVERHNLAEDIMRLREKLQEEM 193

Query: 724  PQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXX 903
             QREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHD              
Sbjct: 194  LQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDAEIQELQAQIQEQH 253

Query: 904  XXXDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK 1083
               DMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK
Sbjct: 254  VQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK 313

Query: 1084 QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK 1263
            QESNEYRRQVQ+LTCEVDALKGTNESLERQMREMEENF+VEAANYQDTIGRLQDEIQNMK
Sbjct: 314  QESNEYRRQVQTLTCEVDALKGTNESLERQMREMEENFSVEAANYQDTIGRLQDEIQNMK 373

Query: 1264 EEMARHLREYQDLLNVKMALDIEIATYRKPLEGEESRIXXXXXXXXXXXXRETNLESLPL 1443
            EEMARHLREYQDLLNVKMALDIEIATYRK LEGEESRI            RETNL+SLPL
Sbjct: 374  EEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLPLPNFSSLNLRETNLDSLPL 433

Query: 1444 VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE 1542
            VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE
Sbjct: 434  VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE 466


>ref|XP_588095.2| PREDICTED: similar to desmin isoform 1 [Bos taurus]
          Length = 470

 Score =  484 bits (1247), Expect = e-137
 Identities = 252/409 (61%), Positives = 315/409 (77%), Gaps = 1/409 (0%)
 Frame = +1

Query: 316  GGVYATRSSAVRLRSSVPGVRLLQDAVDFSLADAINTEFKNTRTNEKVGLQELNDRFANY 495
            G + A+R  + R+ SS     LL    DFSLADA+N EF  TRTNEKV LQELNDRFANY
Sbjct: 67   GALRASRLGSTRVPSSYGAGELL----DFSLADAVNQEFLTTRTNEKVELQELNDRFANY 122

Query: 496  IDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDN 675
            I+KVRFLEQQN  L AE+ +LKG+  +R+ ++YEEE+RELRRQV+ LTN +ARV+VERDN
Sbjct: 123  IEKVRFLEQQNAALAAEVNRLKGREPTRVAEIYEEELRELRRQVEVLTNQRARVDVERDN 182

Query: 676  LAEDIMRLREKLQEETPQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKL 855
            L +D+ RL+ KLQEE   +EEAE+ L +FR DVD A+LAR+DLER++ESL EEIAFLKK+
Sbjct: 183  LLDDLQRLKAKLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKV 242

Query: 856  HDXXXXXXXXXXXXXXXXXDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFAD 1035
            H+                 +MD+SKPDLTAALRD+R QYE++AAKN+ EAEEWYKSK +D
Sbjct: 243  HEEEIRELQAQLQEQQVQVEMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSD 302

Query: 1036 LSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAAN 1215
            L++AAN+NNDALRQAKQE  EY  Q+QS TCE+DALKGTN+SL RQMRE+E+ FA EA+ 
Sbjct: 303  LTQAANKNNDALRQAKQEMMEYLHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASG 362

Query: 1216 YQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKPLEGEESRIXXXXXX 1395
            YQD I RL++EI+++K+EMARHLREYQDLLNVKMALD+EIATYRK LEGEESRI      
Sbjct: 363  YQDNIARLEEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQT 422

Query: 1396 XXXXXXRETNLESLPLVDTHSKRTLLIKTVETRDGQVINE-TSQHHDDL 1539
                  RET+ E     + H+K+T++IKT+ETRDG+V++E T Q H+ L
Sbjct: 423  FSALNFRETSPEQRG-SEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 470


>ref|XP_882825.1| PREDICTED: similar to desmin isoform 4 [Bos taurus]
          Length = 489

 Score =  473 bits (1217), Expect = e-133
 Identities = 252/428 (58%), Positives = 315/428 (73%), Gaps = 20/428 (4%)
 Frame = +1

Query: 316  GGVYATRSSAVRLRSSVPGVRLLQDAVDFSLADAINTEFKNTRTNEKVGLQELNDRFANY 495
            G + A+R  + R+ SS     LL    DFSLADA+N EF  TRTNEKV LQELNDRFANY
Sbjct: 67   GALRASRLGSTRVPSSYGAGELL----DFSLADAVNQEFLTTRTNEKVELQELNDRFANY 122

Query: 496  IDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDN 675
            I+KVRFLEQQN  L AE+ +LKG+  +R+ ++YEEE+RELRRQV+ LTN +ARV+VERDN
Sbjct: 123  IEKVRFLEQQNAALAAEVNRLKGREPTRVAEIYEEELRELRRQVEVLTNQRARVDVERDN 182

Query: 676  LAEDIMRLREKLQEETPQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKL 855
            L +D+ RL+ KLQEE   +EEAE+ L +FR DVD A+LAR+DLER++ESL EEIAFLKK+
Sbjct: 183  LLDDLQRLKAKLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKV 242

Query: 856  HDXXXXXXXXXXXXXXXXXDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSK--- 1026
            H+                 +MD+SKPDLTAALRD+R QYE++AAKN+ EAEEWYKSK   
Sbjct: 243  HEEEIRELQAQLQEQQVQVEMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVRL 302

Query: 1027 ----------------FADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNE 1158
                             +DL++AAN+NNDALRQAKQE  EY  Q+QS TCE+DALKGTN+
Sbjct: 303  WQPLCPLNPSLEVFPMVSDLTQAANKNNDALRQAKQEMMEYLHQIQSYTCEIDALKGTND 362

Query: 1159 SLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIA 1338
            SL RQMRE+E+ FA EA+ YQD I RL++EI+++K+EMARHLREYQDLLNVKMALD+EIA
Sbjct: 363  SLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKDEMARHLREYQDLLNVKMALDVEIA 422

Query: 1339 TYRKPLEGEESRIXXXXXXXXXXXXRETNLESLPLVDTHSKRTLLIKTVETRDGQVINE- 1515
            TYRK LEGEESRI            RET+ E     + H+K+T++IKT+ETRDG+V++E 
Sbjct: 423  TYRKLLEGEESRINLPIQTFSALNFRETSPEQRG-SEVHTKKTVMIKTIETRDGEVVSEA 481

Query: 1516 TSQHHDDL 1539
            T Q H+ L
Sbjct: 482  TQQQHEVL 489


>ref|XP_882781.1| PREDICTED: similar to desmin isoform 3 [Bos taurus]
          Length = 477

 Score =  471 bits (1213), Expect = e-133
 Identities = 252/422 (59%), Positives = 315/422 (74%), Gaps = 14/422 (3%)
 Frame = +1

Query: 316  GGVYATRSSAVRLRSSVPGVRLLQDAVDFSLADAINTEFKNTRTNEKVGLQELNDRFANY 495
            G + A+R  + R+ SS     LL    DFSLADA+N EF  TRTNEKV LQELNDRFANY
Sbjct: 67   GALRASRLGSTRVPSSYGAGELL----DFSLADAVNQEFLTTRTNEKVELQELNDRFANY 122

Query: 496  IDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDN 675
            I+KVRFLEQQN  L AE+ +LKG+  +R+ ++YEEE+RELRRQV+ LTN +ARV+VERDN
Sbjct: 123  IEKVRFLEQQNAALAAEVNRLKGREPTRVAEIYEEELRELRRQVEVLTNQRARVDVERDN 182

Query: 676  LAEDIMRLREKLQEETPQREEAESTLQSFR-------------QDVDNASLARLDLERKV 816
            L +D+ RL+ KLQEE   +EEAE+ L +FR              DVD A+LAR+DLER++
Sbjct: 183  LLDDLQRLKAKLQEEIQLKEEAENNLAAFRAVSPLGSPSCLTPSDVDAATLARIDLERRI 242

Query: 817  ESLQEEIAFLKKLHDXXXXXXXXXXXXXXXXXDMDVSKPDLTAALRDVRQQYESVAAKNL 996
            ESL EEIAFLKK+H+                 +MD+SKPDLTAALRD+R QYE++AAKN+
Sbjct: 243  ESLNEEIAFLKKVHEEAQLQEQQVQV------EMDMSKPDLTAALRDIRAQYETIAAKNI 296

Query: 997  QEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQM 1176
             EAEEWYKSK +DL++AAN+NNDALRQAKQE  EY  Q+QS TCE+DALKGTN+SL RQM
Sbjct: 297  SEAEEWYKSKVSDLTQAANKNNDALRQAKQEMMEYLHQIQSYTCEIDALKGTNDSLMRQM 356

Query: 1177 REMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKPL 1356
            RE+E+ FA EA+ YQD I RL++EI+++K+EMARHLREYQDLLNVKMALD+EIATYRK L
Sbjct: 357  RELEDRFASEASGYQDNIARLEEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLL 416

Query: 1357 EGEESRIXXXXXXXXXXXXRETNLESLPLVDTHSKRTLLIKTVETRDGQVINE-TSQHHD 1533
            EGEESRI            RET+ E     + H+K+T++IKT+ETRDG+V++E T Q H+
Sbjct: 417  EGEESRINLPIQTFSALNFRETSPEQRG-SEVHTKKTVMIKTIETRDGEVVSEATQQQHE 475

Query: 1534 DL 1539
             L
Sbjct: 476  VL 477


>ref|NP_776490.1| glial fibrillary acidic protein [Bos taurus]
          Length = 428

 Score =  454 bits (1168), Expect = e-127
 Identities = 235/426 (55%), Positives = 314/426 (73%), Gaps = 7/426 (1%)
 Frame = +1

Query: 283  STSRSLYTSSPGGVYA-------TRSSAVRLRSSVPGVRLLQDAVDFSLADAINTEFKNT 441
            S +R  Y SS   V         TR S  R+   +P        VDFSLA A+N+ FK T
Sbjct: 8    SATRRSYVSSSEMVVGGRRLGPGTRLSLARMPPPLPA------RVDFSLAGALNSGFKET 61

Query: 442  RTNEKVGLQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRR 621
            R +E+  + ELNDRFA+YI+KVRFLEQQNK L AEL QL+ +  ++L D+Y+ E+RELR 
Sbjct: 62   RASERAEMMELNDRFASYIEKVRFLEQQNKALAAELNQLRAKEPTKLADVYQAELRELRL 121

Query: 622  QVDQLTNDKARVEVERDNLAEDIMRLREKLQEETPQREEAESTLQSFRQDVDNASLARLD 801
            ++DQLT + AR+EVERDNLA+D+  LR+KLQ+ET QR EAE+ L ++RQ+ D A+LARLD
Sbjct: 122  RLDQLTANSARLEVERDNLAQDLGTLRQKLQDETNQRLEAENNLAAYRQEADEATLARLD 181

Query: 802  LERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXXXXXDMDVSKPDLTAALRDVRQQYESV 981
            LERK+ESL+EEI FL+K+H+                 +MDV+KPDLTAALR++R QYE+V
Sbjct: 182  LERKIESLEEEIRFLRKIHEEEVRELQEQLAQQQVHVEMDVAKPDLTAALREIRTQYEAV 241

Query: 982  AAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNES 1161
            A+ N+ EAEEWY+SKFADL++AA RN + +RQAK E+N+YRRQ+Q+LTC++++L+GTNES
Sbjct: 242  ASSNMHEAEEWYRSKFADLNDAARRNAELVRQAKHEANDYRRQLQALTCDLESLRGTNES 301

Query: 1162 LERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIAT 1341
            LERQMRE E+  A EAA+YQ+ + RL++E Q++K+EMARHL+EYQDLLNVK+ALDIEIAT
Sbjct: 302  LERQMREQEDAHAREAASYQEALARLEEEGQSLKDEMARHLQEYQDLLNVKLALDIEIAT 361

Query: 1342 YRKPLEGEESRIXXXXXXXXXXXXRETNLESLPLVDTHSKRTLLIKTVETRDGQVINETS 1521
            YRK LEGEE+RI            RET+L++  + + H KR +++KTVE RDG+VI E+ 
Sbjct: 362  YRKLLEGEENRITIPVQTFSNLQIRETSLDTKSVSEGHLKRNIVVKTVEMRDGEVIKESP 421

Query: 1522 QHHDDL 1539
            Q H D+
Sbjct: 422  QEHKDV 427


>ref|XP_882737.1| PREDICTED: similar to desmin isoform 2 [Bos taurus]
          Length = 423

 Score =  401 bits (1030), Expect = e-111
 Identities = 221/409 (54%), Positives = 276/409 (67%), Gaps = 1/409 (0%)
 Frame = +1

Query: 316  GGVYATRSSAVRLRSSVPGVRLLQDAVDFSLADAINTEFKNTRTNEKVGLQELNDRFANY 495
            G + A+R  + R+ SS     LL    DFSLADA+N EF  TRTNEK             
Sbjct: 67   GALRASRLGSTRVPSSYGAGELL----DFSLADAVNQEFLTTRTNEK------------- 109

Query: 496  IDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDN 675
                                              EE+RELRRQV+ LTN +ARV+VERDN
Sbjct: 110  ----------------------------------EELRELRRQVEVLTNQRARVDVERDN 135

Query: 676  LAEDIMRLREKLQEETPQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKL 855
            L +D+ RL+ KLQEE   +EEAE+ L +FR DVD A+LAR+DLER++ESL EEIAFLKK+
Sbjct: 136  LLDDLQRLKAKLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKV 195

Query: 856  HDXXXXXXXXXXXXXXXXXDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFAD 1035
            H+                 +MD+SKPDLTAALRD+R QYE++AAKN+ EAEEWYKSK +D
Sbjct: 196  HEEEIRELQAQLQEQQVQVEMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSD 255

Query: 1036 LSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAAN 1215
            L++AAN+NNDALRQAKQE  EY  Q+QS TCE+DALKGTN+SL RQMRE+E+ FA EA+ 
Sbjct: 256  LTQAANKNNDALRQAKQEMMEYLHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASG 315

Query: 1216 YQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKPLEGEESRIXXXXXX 1395
            YQD I RL++EI+++K+EMARHLREYQDLLNVKMALD+EIATYRK LEGEESRI      
Sbjct: 316  YQDNIARLEEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQT 375

Query: 1396 XXXXXXRETNLESLPLVDTHSKRTLLIKTVETRDGQVINE-TSQHHDDL 1539
                  RET+ E     + H+K+T++IKT+ETRDG+V++E T Q H+ L
Sbjct: 376  FSALNFRETSPEQRG-SEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 423


>ref|XP_610746.2| PREDICTED: similar to internexin neuronal intermediate filament
            protein, alpha isoform 1 [Bos taurus]
          Length = 499

 Score =  346 bits (887), Expect = 4e-95
 Identities = 193/376 (51%), Positives = 264/376 (70%), Gaps = 6/376 (1%)
 Frame = +1

Query: 265  GSALRPSTSRSLYTSSPGGVYATRSSAVRLRSSVPGVRL-LQDAVDFSLADAINTEFKNT 441
            GS    S SRS   SS     A  SSA  L   +   R    D +D S A A   E+K  
Sbjct: 36   GSFRSQSLSRSNVASS-----AACSSASSLGLGLAYRRSPASDGLDLSQAAARTNEYKII 90

Query: 442  RTNEKVGLQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGK--SRLGDLYEEEMREL 615
            RTNEK  LQ LNDRFA +I+KV  LE QN+ L AEL  L+ +    SR+G+L++ E+R+L
Sbjct: 91   RTNEKEQLQGLNDRFAVFIEKVHQLETQNRALEAELAALRQRHAEPSRVGELFQRELRDL 150

Query: 616  RRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEETPQREEAESTLQSFRQDVDNASLAR 795
            R Q+++ ++ +A+  +ERD LAE++ RLR + +EE+  RE AE  L++ ++DVD A+LAR
Sbjct: 151  RAQLEEASSARAQALLERDGLAEEVQRLRARCEEESRGREGAERALKAQQRDVDGATLAR 210

Query: 796  LDLERKVESLQEEIAFLKKLHDXXXX---XXXXXXXXXXXXXDMDVSKPDLTAALRDVRQ 966
            LDLE+KVESL +E+AF++++HD                    D+ V+KPDL++ALR++R 
Sbjct: 211  LDLEKKVESLLDELAFVRQVHDEEVAELLATLQASSQAAAEVDVAVAKPDLSSALREIRA 270

Query: 967  QYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALK 1146
            QYES+AAKNLQ AEEWYKSKFA+L+E A R+ +A+R +++E +EYRRQ+Q+ T E++ L+
Sbjct: 271  QYESLAAKNLQSAEEWYKSKFANLNEQAARSTEAIRASREEIHEYRRQLQARTIEIEGLR 330

Query: 1147 GTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALD 1326
            G NESLERQ+ E+EE  + E A+YQD IG+L+++++N K EMARHLREYQDLLNVKMALD
Sbjct: 331  GANESLERQILELEERHSAEVASYQDNIGQLENDLRNTKSEMARHLREYQDLLNVKMALD 390

Query: 1327 IEIATYRKPLEGEESR 1374
            IEIA YRK LEGEE+R
Sbjct: 391  IEIAAYRKLLEGEETR 406


>ref|NP_776546.1| neurofilament, light polypeptide [Bos taurus]
          Length = 555

 Score =  320 bits (821), Expect = 2e-87
 Identities = 173/368 (47%), Positives = 249/368 (67%), Gaps = 3/368 (0%)
 Frame = +1

Query: 283  STSRSLYTSSPGGVYATRSSAVRLRSSVPGVRLLQDAVDFSLADAINTEFKNTRTNEKVG 462
            ST+RS Y+S    V ++ S      SS   +    +++D S   AI+ + K+ RT EK  
Sbjct: 34   STARSAYSSYSAPVSSSLSVRRSYSSSSGSLMPSLESLDLSQVAAISNDLKSIRTQEKAQ 93

Query: 463  LQELNDRFANYIDKVRFLEQQNKILLAELEQL--KGQGKSRLGDLYEEEMRELRRQVDQL 636
            LQ+LNDRFA++I++V  LEQQNK+L AEL  L  K    SR   LYE+E+R+LR   +  
Sbjct: 94   LQDLNDRFASFIERVHELEQQNKVLEAELLVLRQKHSEPSRFRALYEQEIRDLRLAAEDA 153

Query: 637  TNDKARVEVERDNLAEDIMRLREKLQEETPQREEAESTLQSFRQDVDNASLARLDLERKV 816
            TN+K  ++ ER+ L E +  L+ + +EE   RE+AE  L   R+  D A+LAR +LE+++
Sbjct: 154  TNEKQALQGEREGLEETLRNLQARYEEEVLSREDAEGRLMEARKGADEAALARAELEKRI 213

Query: 817  ESLQEEIAFLKKLHDXXXXXXXXXXXXXXXXXDMDVS-KPDLTAALRDVRQQYESVAAKN 993
            +SL +EIAFLKK+H+                 +MDVS KPDL+AAL+D+R QYE +AAKN
Sbjct: 214  DSLMDEIAFLKKVHEEEIAELQAQIQYAQISVEMDVSSKPDLSAALKDIRAQYEKLAAKN 273

Query: 994  LQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQ 1173
            +Q AEEW+KS+F  L+E+A +N DA+R AK E +E RR +++ T E++A +G NE+LE+Q
Sbjct: 274  MQNAEEWFKSRFTVLTESAAKNTDAVRAAKDEVSESRRLLKAKTLEIEACRGMNEALEKQ 333

Query: 1174 MREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKP 1353
            ++E+E+    + +  QDTI +L++E++  K EMAR+L+EYQDLLNVKMALDIEIA YRK 
Sbjct: 334  LQELEDKQNADISAMQDTINKLENELRTTKSEMARYLKEYQDLLNVKMALDIEIAAYRKL 393

Query: 1354 LEGEESRI 1377
            LEGEE+R+
Sbjct: 394  LEGEETRL 401


>ref|XP_587177.2| PREDICTED: similar to peripherin [Bos taurus]
          Length = 545

 Score =  315 bits (807), Expect = 8e-86
 Identities = 161/254 (63%), Positives = 206/254 (81%), Gaps = 2/254 (0%)
 Frame = +1

Query: 619  RQVDQLTNDKARVEVERDNLAEDIMRLREKLQEETPQREEAESTLQSFRQDVDNASLARL 798
            ++++ L  ++ RV+VERD LAED+  L+++L+EET +RE+AE  L  FR+DVD+A+L+RL
Sbjct: 292  QELELLGRERDRVQVERDGLAEDLAALKQRLEEETRKREDAEHNLVLFRKDVDDATLSRL 351

Query: 799  DLERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXXXXX-DMDVS-KPDLTAALRDVRQQY 972
            +LERK+ESL +EI FLKKLH+                  +++ + KP+LTAALRD+R QY
Sbjct: 352  ELERKIESLMDEIEFLKKLHEEELRDLQLSVESQQVQHVEVEATVKPELTAALRDIRAQY 411

Query: 973  ESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGT 1152
            ES+AAKNLQEAEEWYKSK+ADLS+AANRN++ALRQAKQE NE RRQ+QSLTCEVD L+GT
Sbjct: 412  ESIAAKNLQEAEEWYKSKYADLSDAANRNHEALRQAKQEMNESRRQIQSLTCEVDGLRGT 471

Query: 1153 NESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIE 1332
            NE+L RQ+RE+EE FA+EA  YQ    RL++E++ +KEEMARHLREYQ+LLNVKMALDIE
Sbjct: 472  NEALLRQLRELEEQFALEAGGYQAGAARLEEELRQLKEEMARHLREYQELLNVKMALDIE 531

Query: 1333 IATYRKPLEGEESR 1374
            IATYRK LEGEESR
Sbjct: 532  IATYRKLLEGEESR 545


>ref|XP_582135.2| PREDICTED: similar to neurofilament 3, medium [Bos taurus]
          Length = 1241

 Score =  311 bits (796), Expect = 1e-84
 Identities = 164/368 (44%), Positives = 254/368 (69%), Gaps = 3/368 (0%)
 Frame = +1

Query: 280  PSTSRSLYTSSPGGVYATRSSAVRLRSSVPGVRLLQDAVDFSLADAINTEFKNTRTNEKV 459
            PST  S Y  S      T SSA+ L S+   +   Q +   +       ++K +R+NEK 
Sbjct: 355  PSTVSSSYKRSALAPRLTYSSAM-LSSAESSLDFSQSSSLLNGGSGPGGDYKLSRSNEKE 413

Query: 460  GLQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKS--RLGDLYEEEMRELRRQVDQ 633
             LQ LNDRFA YI+KV +LEQQNK + AE++ L+ +  S  +LGD Y++E+RELR  ++ 
Sbjct: 414  QLQGLNDRFAGYIEKVHYLEQQNKEIEAEIQALRQKQASHAQLGDAYDQEIRELRATLEM 473

Query: 634  LTNDKARVEVERDNLAEDIMRLREKLQEETPQREEAESTLQSFRQDVDNASLARLDLERK 813
            + ++KA+V+++ D+L EDI RL+E+ +EE   R++ E+ +++ R+D++ +SL +++L++K
Sbjct: 474  VNHEKAQVQLDSDHLEEDIHRLKERFEEEARLRDDTEAAIRALRKDIEESSLVKVELDKK 533

Query: 814  VESLQEEIAFLKKLHDXXXXXXXXXXXXXXXXXDM-DVSKPDLTAALRDVRQQYESVAAK 990
            V+SLQ+E+AFL+  H+                 +  D  K D++ AL+++R Q ES + +
Sbjct: 534  VQSLQDEVAFLRSNHEEEVADLLAQIQASHITVERKDYLKTDISTALKEIRSQLESHSDQ 593

Query: 991  NLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLER 1170
            N+ +AEEW+K ++A L+EAA +N +A+R AK+E  EYRRQ+QS + E+++++GT ESLER
Sbjct: 594  NMHQAEEWFKCRYAKLTEAAEQNKEAIRSAKEEIAEYRRQLQSKSIELESVRGTKESLER 653

Query: 1171 QMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRK 1350
            Q+ ++EE    + ++YQDTI +L++E++  K EMARHLREYQDLLNVKMALDIEIA YRK
Sbjct: 654  QLSDIEERHNHDLSSYQDTIQQLENELRGTKWEMARHLREYQDLLNVKMALDIEIAAYRK 713

Query: 1351 PLEGEESR 1374
             LEGEE+R
Sbjct: 714  LLEGEETR 721


  Database: RefSeqBP
    Posted date:  Aug 1, 2006  7:14 PM
  Number of letters in database: 16,112,626
  Number of sequences in database:  33,508
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,460,571
Number of Sequences: 33508
Number of extensions: 1225511
Number of successful extensions: 6880
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 4844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6117
length of database: 16,112,626
effective HSP length: 108
effective length of database: 12,493,762
effective search space used: 6484262478
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= OVR01_0077_D07
         (1883 letters)

Database: RefSeqCP 
           33,732 sequences; 19,266,565 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_856478.1| PREDICTED: similar to vimentin isoform 12 [Cani...   748   0.0  
Alignment   gi|XP_535175.2| PREDICTED: similar to vimentin isoform 1 [Canis...   748   0.0  
Alignment   gi|XP_856433.1| PREDICTED: similar to vimentin isoform 11 [Cani...   743   0.0  
Alignment   gi|XP_856390.1| PREDICTED: similar to vimentin isoform 10 [Cani...   730   0.0  
Alignment   gi|XP_856348.1| PREDICTED: similar to vimentin isoform 9 [Canis...   712   0.0  
Alignment   gi|XP_856267.1| PREDICTED: similar to vimentin isoform 7 [Canis...   669   0.0  
Alignment   gi|XP_856226.1| PREDICTED: similar to Vimentin isoform 6 [Canis...   667   0.0  
Alignment   gi|XP_856098.1| PREDICTED: similar to Vimentin isoform 3 [Canis...   662   0.0  
Alignment   gi|XP_856309.1| PREDICTED: similar to Vimentin isoform 8 [Canis...   640   0.0  
Alignment   gi|XP_856058.1| PREDICTED: similar to Vimentin isoform 2 [Canis...   629   e-180

>ref|XP_856478.1| PREDICTED: similar to vimentin isoform 12 [Canis familiaris]
          Length = 466

 Score =  748 bits (1930), Expect = 0.0
 Identities = 396/453 (87%), Positives = 398/453 (87%)
 Frame = +1

Query: 184  MFGGPGXXXXXXXXXXXXXXXXXXXXLGSALRPSTSRSLYTSSPGGVYATRSSAVRLRSS 363
            MFGGPG                    LGSALRPSTSRSLY SSPGG YATRSSAVRLRSS
Sbjct: 14   MFGGPGTGSRPSSTRSYVTTSTRTYSLGSALRPSTSRSLYASSPGGAYATRSSAVRLRSS 73

Query: 364  VPGVRLLQDAVDFSLADAINTEFKNTRTNEKVGLQELNDRFANYIDKVRFLEQQNKILLA 543
            VPGVRLLQD+VDFSLADAINTEFKNTRTNEKV LQELNDRFANYIDKVRFLEQQNKILLA
Sbjct: 74   VPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA 133

Query: 544  ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEET 723
            ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEE 
Sbjct: 134  ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM 193

Query: 724  PQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXX 903
             QREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHD              
Sbjct: 194  LQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQDQH 253

Query: 904  XXXDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK 1083
               DMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK
Sbjct: 254  VQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK 313

Query: 1084 QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK 1263
            QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK
Sbjct: 314  QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK 373

Query: 1264 EEMARHLREYQDLLNVKMALDIEIATYRKPLEGEESRIXXXXXXXXXXXXRETNLESLPL 1443
            EEMARHLREYQDLLNVKMALDIEIATYRK LEGEESRI            RETNL+SLPL
Sbjct: 374  EEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIALPLPNFSSLNLRETNLDSLPL 433

Query: 1444 VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE 1542
            VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE
Sbjct: 434  VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE 466


>ref|XP_535175.2| PREDICTED: similar to vimentin isoform 1 [Canis familiaris]
          Length = 466

 Score =  748 bits (1930), Expect = 0.0
 Identities = 396/453 (87%), Positives = 398/453 (87%)
 Frame = +1

Query: 184  MFGGPGXXXXXXXXXXXXXXXXXXXXLGSALRPSTSRSLYTSSPGGVYATRSSAVRLRSS 363
            MFGGPG                    LGSALRPSTSRSLY SSPGG YATRSSAVRLRSS
Sbjct: 14   MFGGPGTGSRPSSTRSYVTTSTRTYSLGSALRPSTSRSLYASSPGGAYATRSSAVRLRSS 73

Query: 364  VPGVRLLQDAVDFSLADAINTEFKNTRTNEKVGLQELNDRFANYIDKVRFLEQQNKILLA 543
            VPGVRLLQD+VDFSLADAINTEFKNTRTNEKV LQELNDRFANYIDKVRFLEQQNKILLA
Sbjct: 74   VPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA 133

Query: 544  ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEET 723
            ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEE 
Sbjct: 134  ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM 193

Query: 724  PQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXX 903
             QREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHD              
Sbjct: 194  LQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQDQH 253

Query: 904  XXXDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK 1083
               DMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK
Sbjct: 254  VQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK 313

Query: 1084 QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK 1263
            QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK
Sbjct: 314  QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK 373

Query: 1264 EEMARHLREYQDLLNVKMALDIEIATYRKPLEGEESRIXXXXXXXXXXXXRETNLESLPL 1443
            EEMARHLREYQDLLNVKMALDIEIATYRK LEGEESRI            RETNL+SLPL
Sbjct: 374  EEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIALPLPNFSSLNLRETNLDSLPL 433

Query: 1444 VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE 1542
            VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE
Sbjct: 434  VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE 466


>ref|XP_856433.1| PREDICTED: similar to vimentin isoform 11 [Canis familiaris]
          Length = 460

 Score =  743 bits (1919), Expect = 0.0
 Identities = 396/453 (87%), Positives = 398/453 (87%)
 Frame = +1

Query: 184  MFGGPGXXXXXXXXXXXXXXXXXXXXLGSALRPSTSRSLYTSSPGGVYATRSSAVRLRSS 363
            MFGGPG                    LGSALRPSTSRSLY SSPGG YATRSSAVRLRSS
Sbjct: 14   MFGGPGTGSRPSSTRSYVTTSTRTYSLGSALRPSTSRSLYASSPGGAYATRSSAVRLRSS 73

Query: 364  VPGVRLLQDAVDFSLADAINTEFKNTRTNEKVGLQELNDRFANYIDKVRFLEQQNKILLA 543
            VPGVRLLQD+VDFSLADAINTEFKNTRTNEKV LQELNDRFANYIDKVRFLEQQNKILLA
Sbjct: 74   VPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA 133

Query: 544  ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEET 723
            ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEE 
Sbjct: 134  ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM 193

Query: 724  PQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXX 903
             QREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHD              
Sbjct: 194  LQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEAQIQDQHVQI--- 250

Query: 904  XXXDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK 1083
               DMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK
Sbjct: 251  ---DMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK 307

Query: 1084 QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK 1263
            QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK
Sbjct: 308  QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK 367

Query: 1264 EEMARHLREYQDLLNVKMALDIEIATYRKPLEGEESRIXXXXXXXXXXXXRETNLESLPL 1443
            EEMARHLREYQDLLNVKMALDIEIATYRK LEGEESRI            RETNL+SLPL
Sbjct: 368  EEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIALPLPNFSSLNLRETNLDSLPL 427

Query: 1444 VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE 1542
            VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE
Sbjct: 428  VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE 460


>ref|XP_856390.1| PREDICTED: similar to vimentin isoform 10 [Canis familiaris]
          Length = 465

 Score =  730 bits (1885), Expect = 0.0
 Identities = 390/453 (86%), Positives = 393/453 (86%)
 Frame = +1

Query: 184  MFGGPGXXXXXXXXXXXXXXXXXXXXLGSALRPSTSRSLYTSSPGGVYATRSSAVRLRSS 363
            MFGGPG                    LGSALRPSTSRSLY SSPGG YATRSSAVRLRSS
Sbjct: 14   MFGGPGTGSRPSSTRSYVTTSTRTYSLGSALRPSTSRSLYASSPGGAYATRSSAVRLRSS 73

Query: 364  VPGVRLLQDAVDFSLADAINTEFKNTRTNEKVGLQELNDRFANYIDKVRFLEQQNKILLA 543
            VPGVRLLQD+VDFSLADAINTEFKNTRTNEKV LQELNDRFANYIDKVRFLEQQNKILLA
Sbjct: 74   VPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA 133

Query: 544  ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEET 723
            ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMR+     EE 
Sbjct: 134  ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRVGAA-GEEM 192

Query: 724  PQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXX 903
             QREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHD              
Sbjct: 193  LQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQDQH 252

Query: 904  XXXDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK 1083
               DMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK
Sbjct: 253  VQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK 312

Query: 1084 QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK 1263
            QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK
Sbjct: 313  QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK 372

Query: 1264 EEMARHLREYQDLLNVKMALDIEIATYRKPLEGEESRIXXXXXXXXXXXXRETNLESLPL 1443
            EEMARHLREYQDLLNVKMALDIEIATYRK LEGEESRI            RETNL+SLPL
Sbjct: 373  EEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIALPLPNFSSLNLRETNLDSLPL 432

Query: 1444 VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE 1542
            VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE
Sbjct: 433  VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE 465


>ref|XP_856348.1| PREDICTED: similar to vimentin isoform 9 [Canis familiaris]
          Length = 458

 Score =  712 bits (1838), Expect = 0.0
 Identities = 383/453 (84%), Positives = 385/453 (84%)
 Frame = +1

Query: 184  MFGGPGXXXXXXXXXXXXXXXXXXXXLGSALRPSTSRSLYTSSPGGVYATRSSAVRLRSS 363
            MFGGPG                    LGSALRPSTSRSLY SSPGG YATRSSAVRLRSS
Sbjct: 14   MFGGPGTGSRPSSTRSYVTTSTRTYSLGSALRPSTSRSLYASSPGGAYATRSSAVRLRSS 73

Query: 364  VPGVRLLQDAVDFSLADAINTEFKNTRTNEKVGLQELNDRFANYIDKVRFLEQQNKILLA 543
            VPGVRLLQD+VDFSLADAINTEFKNTRTNEKV LQELNDRFANYIDKVRFLEQQNKILLA
Sbjct: 74   VPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA 133

Query: 544  ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEET 723
            ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEE 
Sbjct: 134  ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM 193

Query: 724  PQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXX 903
             QREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHD              
Sbjct: 194  LQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQDQH 253

Query: 904  XXXDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK 1083
               DMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK
Sbjct: 254  VQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK 313

Query: 1084 QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK 1263
            QESNEYRRQ  S           NESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK
Sbjct: 314  QESNEYRRQPFSFL--------QNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK 365

Query: 1264 EEMARHLREYQDLLNVKMALDIEIATYRKPLEGEESRIXXXXXXXXXXXXRETNLESLPL 1443
            EEMARHLREYQDLLNVKMALDIEIATYRK LEGEESRI            RETNL+SLPL
Sbjct: 366  EEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIALPLPNFSSLNLRETNLDSLPL 425

Query: 1444 VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE 1542
            VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE
Sbjct: 426  VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE 458


>ref|XP_856267.1| PREDICTED: similar to vimentin isoform 7 [Canis familiaris]
          Length = 433

 Score =  669 bits (1725), Expect = 0.0
 Identities = 354/398 (88%), Positives = 355/398 (89%)
 Frame = +1

Query: 184  MFGGPGXXXXXXXXXXXXXXXXXXXXLGSALRPSTSRSLYTSSPGGVYATRSSAVRLRSS 363
            MFGGPG                    LGSALRPSTSRSLY SSPGG YATRSSAVRLRSS
Sbjct: 14   MFGGPGTGSRPSSTRSYVTTSTRTYSLGSALRPSTSRSLYASSPGGAYATRSSAVRLRSS 73

Query: 364  VPGVRLLQDAVDFSLADAINTEFKNTRTNEKVGLQELNDRFANYIDKVRFLEQQNKILLA 543
            VPGVRLLQD+VDFSLADAINTEFKNTRTNEKV LQELNDRFANYIDKVRFLEQQNKILLA
Sbjct: 74   VPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA 133

Query: 544  ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEET 723
            ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEE 
Sbjct: 134  ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM 193

Query: 724  PQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXX 903
             QREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHD              
Sbjct: 194  LQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQDQH 253

Query: 904  XXXDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK 1083
               DMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK
Sbjct: 254  VQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK 313

Query: 1084 QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK 1263
            QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK
Sbjct: 314  QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK 373

Query: 1264 EEMARHLREYQDLLNVKMALDIEIATYRKPLEGEESRI 1377
            EEMARHLREYQDLLNVKMALDIEIATYRK LEGEESRI
Sbjct: 374  EEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRI 411


>ref|XP_856226.1| PREDICTED: similar to Vimentin isoform 6 [Canis familiaris]
          Length = 419

 Score =  667 bits (1721), Expect = 0.0
 Identities = 353/397 (88%), Positives = 354/397 (89%)
 Frame = +1

Query: 184  MFGGPGXXXXXXXXXXXXXXXXXXXXLGSALRPSTSRSLYTSSPGGVYATRSSAVRLRSS 363
            MFGGPG                    LGSALRPSTSRSLY SSPGG YATRSSAVRLRSS
Sbjct: 14   MFGGPGTGSRPSSTRSYVTTSTRTYSLGSALRPSTSRSLYASSPGGAYATRSSAVRLRSS 73

Query: 364  VPGVRLLQDAVDFSLADAINTEFKNTRTNEKVGLQELNDRFANYIDKVRFLEQQNKILLA 543
            VPGVRLLQD+VDFSLADAINTEFKNTRTNEKV LQELNDRFANYIDKVRFLEQQNKILLA
Sbjct: 74   VPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA 133

Query: 544  ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEET 723
            ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEE 
Sbjct: 134  ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM 193

Query: 724  PQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXX 903
             QREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHD              
Sbjct: 194  LQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQDQH 253

Query: 904  XXXDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK 1083
               DMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK
Sbjct: 254  VQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK 313

Query: 1084 QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK 1263
            QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK
Sbjct: 314  QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK 373

Query: 1264 EEMARHLREYQDLLNVKMALDIEIATYRKPLEGEESR 1374
            EEMARHLREYQDLLNVKMALDIEIATYRK LEGEESR
Sbjct: 374  EEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESR 410


>ref|XP_856098.1| PREDICTED: similar to Vimentin isoform 3 [Canis familiaris]
          Length = 411

 Score =  662 bits (1709), Expect = 0.0
 Identities = 353/398 (88%), Positives = 354/398 (88%), Gaps = 1/398 (0%)
 Frame = +1

Query: 184  MFGGPGXXXXXXXXXXXXXXXXXXXXLGSALRPSTSRSLYTSSPGGVYATRSSAVRLRSS 363
            MFGGPG                    LGSALRPSTSRSLY SSPGG YATRSSAVRLRSS
Sbjct: 14   MFGGPGTGSRPSSTRSYVTTSTRTYSLGSALRPSTSRSLYASSPGGAYATRSSAVRLRSS 73

Query: 364  VPGVRLLQDAVDFSLADAINTEFKNTRTNEKVGLQELNDRFANYIDKVRFLEQQNKILLA 543
            VPGVRLLQD+VDFSLADAINTEFKNTRTNEKV LQELNDRFANYIDKVRFLEQQNKILLA
Sbjct: 74   VPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA 133

Query: 544  ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEET 723
            ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEE 
Sbjct: 134  ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM 193

Query: 724  PQREEAESTLQSFR-QDVDNASLARLDLERKVESLQEEIAFLKKLHDXXXXXXXXXXXXX 900
             QREEAESTLQSFR QDVDNASLARLDLERKVESLQEEIAFLKKLHD             
Sbjct: 194  LQREEAESTLQSFRQQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQDQ 253

Query: 901  XXXXDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQA 1080
                DMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQA
Sbjct: 254  HVQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQA 313

Query: 1081 KQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNM 1260
            KQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNM
Sbjct: 314  KQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNM 373

Query: 1261 KEEMARHLREYQDLLNVKMALDIEIATYRKPLEGEESR 1374
            KEEMARHLREYQDLLNVKMALDIEIATYRK LEGEESR
Sbjct: 374  KEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESR 411


>ref|XP_856309.1| PREDICTED: similar to Vimentin isoform 8 [Canis familiaris]
          Length = 424

 Score =  640 bits (1650), Expect = 0.0
 Identities = 352/453 (77%), Positives = 356/453 (78%)
 Frame = +1

Query: 184  MFGGPGXXXXXXXXXXXXXXXXXXXXLGSALRPSTSRSLYTSSPGGVYATRSSAVRLRSS 363
            MFGGPG                    LGSALRPSTSRSLY SSPGG YATRSSAVRLRSS
Sbjct: 14   MFGGPGTGSRPSSTRSYVTTSTRTYSLGSALRPSTSRSLYASSPGGAYATRSSAVRLRSS 73

Query: 364  VPGVRLLQDAVDFSLADAINTEFKNTRTNEKVGLQELNDRFANYIDKVRFLEQQNKILLA 543
            VPGVRLLQD+VDFSLADAINTEFKNTRTNEKV LQELNDRFANYIDKVRFLEQQNKILLA
Sbjct: 74   VPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA 133

Query: 544  ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEET 723
            ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEE 
Sbjct: 134  ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM 193

Query: 724  PQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXX 903
             QREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHD              
Sbjct: 194  LQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQDQH 253

Query: 904  XXXDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK 1083
               DMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSK           N++L    
Sbjct: 254  VQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSK-----------NESL---- 298

Query: 1084 QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK 1263
                                       ERQMREMEENFAVEAANYQDTIGRLQDEIQNMK
Sbjct: 299  ---------------------------ERQMREMEENFAVEAANYQDTIGRLQDEIQNMK 331

Query: 1264 EEMARHLREYQDLLNVKMALDIEIATYRKPLEGEESRIXXXXXXXXXXXXRETNLESLPL 1443
            EEMARHLREYQDLLNVKMALDIEIATYRK LEGEESRI            RETNL+SLPL
Sbjct: 332  EEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIALPLPNFSSLNLRETNLDSLPL 391

Query: 1444 VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE 1542
            VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE
Sbjct: 392  VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE 424


>ref|XP_856058.1| PREDICTED: similar to Vimentin isoform 2 [Canis familiaris]
          Length = 404

 Score =  629 bits (1621), Expect = e-180
 Identities = 336/397 (84%), Positives = 341/397 (85%)
 Frame = +1

Query: 184  MFGGPGXXXXXXXXXXXXXXXXXXXXLGSALRPSTSRSLYTSSPGGVYATRSSAVRLRSS 363
            MFGGPG                    LGSALRPSTSRSLY SSPGG YATRSSAVRLRSS
Sbjct: 14   MFGGPGTGSRPSSTRSYVTTSTRTYSLGSALRPSTSRSLYASSPGGAYATRSSAVRLRSS 73

Query: 364  VPGVRLLQDAVDFSLADAINTEFKNTRTNEKVGLQELNDRFANYIDKVRFLEQQNKILLA 543
            VPGVRLLQD+VDFSLADAINTEFKNTRTNEKV LQELNDRFANYIDKVRFLEQQNKILLA
Sbjct: 74   VPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA 133

Query: 544  ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEET 723
            ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK   + 
Sbjct: 134  ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKRGGKR 193

Query: 724  PQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXX 903
              R++         +DVDNASLARLDLERKVESLQEEIAFLKKLHD              
Sbjct: 194  RVRDKG------IAEDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQDQH 247

Query: 904  XXXDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK 1083
               DMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK
Sbjct: 248  VQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK 307

Query: 1084 QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK 1263
            QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK
Sbjct: 308  QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK 367

Query: 1264 EEMARHLREYQDLLNVKMALDIEIATYRKPLEGEESR 1374
            EEMARHLREYQDLLNVKMALDIEIATYRK LEGEESR
Sbjct: 368  EEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESR 404


  Database: RefSeqCP
    Posted date:  Aug 1, 2006  9:25 PM
  Number of letters in database: 19,266,565
  Number of sequences in database:  33,732
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,593,774
Number of Sequences: 33732
Number of extensions: 1445832
Number of successful extensions: 9154
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 5740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7848
length of database: 19,266,565
effective HSP length: 109
effective length of database: 15,589,777
effective search space used: 8075504486
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= OVR01_0077_D07
         (1883 letters)

Database: RefSeqHP 
           39,411 sequences; 17,774,539 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_003371.2| vimentin [Homo sapiens]                              743   0.0  
Alignment   gi|NP_001918.3| desmin [Homo sapiens]                                487   e-137
Alignment   gi|NP_002046.1| glial fibrillary acidic protein [Homo sapiens]       449   e-126
Alignment   gi|NP_006253.2| peripherin [Homo sapiens]                            447   e-125
Alignment   gi|NP_116116.1| internexin neuronal intermediate filament prote...   346   4e-95
Alignment   gi|NP_006149.2| neurofilament, light polypeptide 68kDa [Homo sa...   322   9e-88
Alignment   gi|NP_005373.1| neurofilament 3 (150kDa medium) [Homo sapiens]       311   1e-84
Alignment   gi|NP_066554.2| neurofilament, heavy polypeptide 200kDa [Homo s...   266   3e-71
Alignment   gi|NP_002264.1| keratin 8 [Homo sapiens]                             224   2e-58
Alignment   gi|NP_000415.1| keratin 5 [Homo sapiens]                             222   1e-57

>ref|NP_003371.2| vimentin [Homo sapiens]
          Length = 466

 Score =  743 bits (1918), Expect = 0.0
 Identities = 393/453 (86%), Positives = 398/453 (87%)
 Frame = +1

Query: 184  MFGGPGXXXXXXXXXXXXXXXXXXXXLGSALRPSTSRSLYTSSPGGVYATRSSAVRLRSS 363
            MFGGPG                    LGSALRPSTSRSLY SSPGGVYATRSSAVRLRSS
Sbjct: 14   MFGGPGTASRPSSSRSYVTTSTRTYSLGSALRPSTSRSLYASSPGGVYATRSSAVRLRSS 73

Query: 364  VPGVRLLQDAVDFSLADAINTEFKNTRTNEKVGLQELNDRFANYIDKVRFLEQQNKILLA 543
            VPGVRLLQD+VDFSLADAINTEFKNTRTNEKV LQELNDRFANYIDKVRFLEQQNKILLA
Sbjct: 74   VPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA 133

Query: 544  ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEET 723
            ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEE 
Sbjct: 134  ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM 193

Query: 724  PQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXX 903
             QREEAE+TLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLH+              
Sbjct: 194  LQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEEEIQELQAQIQEQH 253

Query: 904  XXXDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK 1083
               D+DVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK
Sbjct: 254  VQIDVDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK 313

Query: 1084 QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK 1263
            QES EYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK
Sbjct: 314  QESTEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK 373

Query: 1264 EEMARHLREYQDLLNVKMALDIEIATYRKPLEGEESRIXXXXXXXXXXXXRETNLESLPL 1443
            EEMARHLREYQDLLNVKMALDIEIATYRK LEGEESRI            RETNL+SLPL
Sbjct: 374  EEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLPLPNFSSLNLRETNLDSLPL 433

Query: 1444 VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE 1542
            VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE
Sbjct: 434  VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE 466


>ref|NP_001918.3| desmin [Homo sapiens]
          Length = 470

 Score =  487 bits (1253), Expect = e-137
 Identities = 254/409 (62%), Positives = 314/409 (76%), Gaps = 1/409 (0%)
 Frame = +1

Query: 316  GGVYATRSSAVRLRSSVPGVRLLQDAVDFSLADAINTEFKNTRTNEKVGLQELNDRFANY 495
            G + A+R    R  SS     LL    DFSLADA+N EF  TRTNEKV LQELNDRFANY
Sbjct: 67   GSLRASRLGTTRTPSSYGAGELL----DFSLADAVNQEFLTTRTNEKVELQELNDRFANY 122

Query: 496  IDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDN 675
            I+KVRFLEQQN  L AE+ +LKG+  +R+ +LYEEE+RELRRQV+ LTN +ARV+VERDN
Sbjct: 123  IEKVRFLEQQNAALAAEVNRLKGREPTRVAELYEEELRELRRQVEVLTNQRARVDVERDN 182

Query: 676  LAEDIMRLREKLQEETPQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKL 855
            L +D+ RL+ KLQEE   +EEAE+ L +FR DVD A+LAR+DLER++ESL EEIAFLKK+
Sbjct: 183  LLDDLQRLKAKLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKV 242

Query: 856  HDXXXXXXXXXXXXXXXXXDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFAD 1035
            H+                 +MD+SKPDLTAALRD+R QYE++AAKN+ EAEEWYKSK +D
Sbjct: 243  HEEEIRELQAQLQEQQVQVEMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSD 302

Query: 1036 LSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAAN 1215
            L++AAN+NNDALRQAKQE  EYR Q+QS TCE+DALKGTN+SL RQMRE+E+ FA EA+ 
Sbjct: 303  LTQAANKNNDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASG 362

Query: 1216 YQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKPLEGEESRIXXXXXX 1395
            YQD I RL++EI+++K+EMARHLREYQDLLNVKMALD+EIATYRK LEGEESRI      
Sbjct: 363  YQDNIARLEEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQT 422

Query: 1396 XXXXXXRETNLESLPLVDTHSKRTLLIKTVETRDGQVINE-TSQHHDDL 1539
                  RET+ E     + H+K+T++IKT+ETRDG+V++E T Q H+ L
Sbjct: 423  YSALNFRETSPEQRG-SEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 470


>ref|NP_002046.1| glial fibrillary acidic protein [Homo sapiens]
          Length = 432

 Score =  449 bits (1156), Expect = e-126
 Identities = 233/427 (54%), Positives = 312/427 (73%), Gaps = 8/427 (1%)
 Frame = +1

Query: 283  STSRSLYTSSPGGVYATRSSAVRLRSSVPGVRL--------LQDAVDFSLADAINTEFKN 438
            S +R  Y SS   +    +   RL    PG RL        L   VDFSLA A+N  FK 
Sbjct: 8    SAARRSYVSSGEMMVGGLAPGRRLG---PGTRLSLARMPPPLPTRVDFSLAGALNAGFKE 64

Query: 439  TRTNEKVGLQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELR 618
            TR +E+  + ELNDRFA+YI+KVRFLEQQNK L AEL QL+ +  ++L D+Y+ E+RELR
Sbjct: 65   TRASERAEMMELNDRFASYIEKVRFLEQQNKALAAELNQLRAKEPTKLADVYQAELRELR 124

Query: 619  RQVDQLTNDKARVEVERDNLAEDIMRLREKLQEETPQREEAESTLQSFRQDVDNASLARL 798
             ++DQLT + AR+EVERDNLA+D+  +R+KLQ+ET  R EAE+ L ++RQ+ D A+LARL
Sbjct: 125  LRLDQLTANSARLEVERDNLAQDLATVRQKLQDETNLRLEAENNLAAYRQEADEATLARL 184

Query: 799  DLERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXXXXXDMDVSKPDLTAALRDVRQQYES 978
            DLERK+ESL+EEI FL+K+H+                 ++DV+KPDLTAAL+++R QYE+
Sbjct: 185  DLERKIESLEEEIRFLRKIHEEEVRELQEQLARQQVHVELDVAKPDLTAALKEIRTQYEA 244

Query: 979  VAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNE 1158
            +A+ N+ EAEEWY+SKFADL++AA RN + LRQAK E+N+YRRQ+QSLTC++++L+GTNE
Sbjct: 245  MASSNMHEAEEWYRSKFADLTDAAARNAELLRQAKHEANDYRRQLQSLTCDLESLRGTNE 304

Query: 1159 SLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIA 1338
            SLERQMRE EE    EAA+YQ+ + RL++E Q++K+EMARHL+EYQDLLNVK+ALDIEIA
Sbjct: 305  SLERQMREQEERHVREAASYQEALARLEEEGQSLKDEMARHLQEYQDLLNVKLALDIEIA 364

Query: 1339 TYRKPLEGEESRIXXXXXXXXXXXXRETNLESLPLVDTHSKRTLLIKTVETRDGQVINET 1518
            TYRK LEGEE+RI            RET+L++  + + H KR +++KTVE RDG+VI E+
Sbjct: 365  TYRKLLEGEENRITIPVQTFSNLQIRETSLDTKSVSEGHLKRNIVVKTVEMRDGEVIKES 424

Query: 1519 SQHHDDL 1539
             Q H D+
Sbjct: 425  KQEHKDV 431


>ref|NP_006253.2| peripherin [Homo sapiens]
          Length = 470

 Score =  447 bits (1149), Expect = e-125
 Identities = 244/428 (57%), Positives = 318/428 (74%), Gaps = 9/428 (2%)
 Frame = +1

Query: 268  SALRPSTSRSLYTSSPGGVYATRSSAVRL---RSSVPG----VRLLQDAVDFSLADAINT 426
            S+ R S+SR L ++SP       SS+VRL   RS   G    +RL  + +DFS+A+A+N 
Sbjct: 36   SSSRFSSSRLLGSASP-------SSSVRLGSFRSPRAGAGALLRLPSERLDFSMAEALNQ 88

Query: 427  EFKNTRTNEKVGLQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEM 606
            EF  TR+NEK  LQELNDRFAN+I+KVRFLEQQN  L  EL Q +GQ  +R   L ++E+
Sbjct: 89   EFLATRSNEKQELQELNDRFANFIEKVRFLEQQNAALRGELSQARGQEPARADQLCQQEL 148

Query: 607  RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEETPQREEAESTLQSFRQDVDNAS 786
            RELRR+++ L  ++ RV+VERD LAED+  L+++L+EET +RE+AE  L  FR+DVD+A+
Sbjct: 149  RELRRELELLGRERDRVQVERDGLAEDLAALKQRLEEETRKREDAEHNLVLFRKDVDDAT 208

Query: 787  LARLDLERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXXXXX-DMDVS-KPDLTAALRDV 960
            L+RL+LERK+ESL +EI FLKKLH+                  +++ + KP+LTAALRD+
Sbjct: 209  LSRLELERKIESLMDEIEFLKKLHEEELRDLQVSVESQQVQQVEVEATVKPELTAALRDI 268

Query: 961  RQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDA 1140
            R QYES+AAKNLQEAEEWYKSK+ADLS+AANRN++ALRQAKQE NE RRQ+QSLTCEVD 
Sbjct: 269  RAQYESIAAKNLQEAEEWYKSKYADLSDAANRNHEALRQAKQEMNESRRQIQSLTCEVDG 328

Query: 1141 LKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMA 1320
            L+GTNE+L RQ+RE+EE FA+EA  YQ    RL++E++ +KEEMARHLREYQ+LLNVKMA
Sbjct: 329  LRGTNEALLRQLRELEEQFALEAGGYQAGAARLEEELRQLKEEMARHLREYQELLNVKMA 388

Query: 1321 LDIEIATYRKPLEGEESRIXXXXXXXXXXXXRETNLESLPLVDTHSKRTLLIKTVETRDG 1500
            LDIEIATYRK LEGEESRI            + T  E  P  D+HS++T+LIKT+ETR+G
Sbjct: 389  LDIEIATYRKLLEGEESRISVPVHSFASLNIKTTVPEVEPPQDSHSRKTVLIKTIETRNG 448

Query: 1501 QVINETSQ 1524
            +V+ E+ +
Sbjct: 449  EVVTESQK 456


>ref|NP_116116.1| internexin neuronal intermediate filament protein, alpha [Homo
            sapiens]
          Length = 499

 Score =  346 bits (887), Expect = 4e-95
 Identities = 179/334 (53%), Positives = 249/334 (74%), Gaps = 5/334 (1%)
 Frame = +1

Query: 388  DAVDFSLADAINTEFKNTRTNEKVGLQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQ 567
            D +D S A A   E+K  RTNEK  LQ LNDRFA +I+KV  LE QN+ L AEL  L+ +
Sbjct: 73   DGLDLSQAAARTNEYKIIRTNEKEQLQGLNDRFAVFIEKVHQLETQNRALEAELAALRQR 132

Query: 568  GK--SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEETPQREEA 741
                SR+G+L++ E+R+LR Q+++ ++ +++  +ERD LAE++ RLR + +EE+  RE A
Sbjct: 133  HAEPSRVGELFQRELRDLRAQLEEASSARSQALLERDGLAEEVQRLRARCEEESRGREGA 192

Query: 742  ESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDXXXX---XXXXXXXXXXXXX 912
            E  L++ ++DVD A+LARLDLE+KVESL +E+AF++++HD                    
Sbjct: 193  ERALKAQQRDVDGATLARLDLEKKVESLLDELAFVRQVHDEEVAELLATLQASSQAAAEV 252

Query: 913  DMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQES 1092
            D+ V+KPDLT+ALR++R QYES+AAKNLQ AEEWYKSKFA+L+E A R+ +A+R +++E 
Sbjct: 253  DVTVAKPDLTSALREIRAQYESLAAKNLQSAEEWYKSKFANLNEQAARSTEAIRASREEI 312

Query: 1093 NEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEM 1272
            +EYRRQ+Q+ T E++ L+G NESLERQ+ E+EE  + E A YQD+IG+L+++++N K EM
Sbjct: 313  HEYRRQLQARTIEIEGLRGANESLERQILELEERHSAEVAGYQDSIGQLENDLRNTKSEM 372

Query: 1273 ARHLREYQDLLNVKMALDIEIATYRKPLEGEESR 1374
            ARHLREYQDLLNVKMALDIEIA YRK LEGEE+R
Sbjct: 373  ARHLREYQDLLNVKMALDIEIAAYRKLLEGEETR 406


>ref|NP_006149.2| neurofilament, light polypeptide 68kDa [Homo sapiens]
          Length = 543

 Score =  322 bits (824), Expect = 9e-88
 Identities = 171/367 (46%), Positives = 248/367 (67%), Gaps = 2/367 (0%)
 Frame = +1

Query: 283  STSRSLYTSSPGGVYATRSSAVRLRSSVPGVRLLQDAVDFSLADAINTEFKNTRTNEKVG 462
            ST+RS Y+S    V ++ S      SS   +    + +D S   AI+ + K+ RT EK  
Sbjct: 34   STARSAYSSYSAPVSSSLSVRRSYSSSSGSLMPSLENLDLSQVAAISNDLKSIRTQEKAQ 93

Query: 463  LQELNDRFANYIDKVRFLEQQNKILLAELEQL--KGQGKSRLGDLYEEEMRELRRQVDQL 636
            LQ+LNDRFA++I++V  LEQQNK+L AEL  L  K    SR   LYE+E+R+LR   +  
Sbjct: 94   LQDLNDRFASFIERVHELEQQNKVLEAELLVLRQKHSEPSRFRALYEQEIRDLRLAAEDA 153

Query: 637  TNDKARVEVERDNLAEDIMRLREKLQEETPQREEAESTLQSFRQDVDNASLARLDLERKV 816
            TN+K  ++ ER+ L E +  L+ + +EE   RE+AE  L   R+  D A+LAR +LE+++
Sbjct: 154  TNEKQALQGEREGLEETLRNLQARYEEEVLSREDAEGRLMEARKGADEAALARAELEKRI 213

Query: 817  ESLQEEIAFLKKLHDXXXXXXXXXXXXXXXXXDMDVSKPDLTAALRDVRQQYESVAAKNL 996
            +SL +EI+FLKK+H+                 +MDV+KPDL+AAL+D+R QYE +AAKN+
Sbjct: 214  DSLMDEISFLKKVHEEEIAELQAQIQYAQISVEMDVTKPDLSAALKDIRAQYEKLAAKNM 273

Query: 997  QEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQM 1176
            Q AEEW+KS+F  L+E+A +N DA+R AK E +E RR +++ T E++A +G NE+LE+Q+
Sbjct: 274  QNAEEWFKSRFTVLTESAAKNTDAVRAAKDEVSESRRLLKAKTLEIEACRGMNEALEKQL 333

Query: 1177 REMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKPL 1356
            +E+E+    + +  QDTI +L++E++  K EMAR+L+EYQDLLNVKMALDIEIA YRK L
Sbjct: 334  QELEDKQNADISAMQDTINKLENELRTTKSEMARYLKEYQDLLNVKMALDIEIAAYRKLL 393

Query: 1357 EGEESRI 1377
            EGEE+R+
Sbjct: 394  EGEETRL 400


>ref|NP_005373.1| neurofilament 3 (150kDa medium) [Homo sapiens]
          Length = 916

 Score =  311 bits (797), Expect = 1e-84
 Identities = 167/383 (43%), Positives = 259/383 (67%), Gaps = 13/383 (3%)
 Frame = +1

Query: 265  GSALRPSTSRSLYTSSPGGV---YATRSSAVRLRSSVPGVRLLQDAVDFSLADAI----- 420
            GS      S+S    SP  V   Y     A RL  S   +   + ++DFS + ++     
Sbjct: 29   GSPSSGFRSQSWSRGSPSTVSSSYKRSMLAPRLAYSSAMLSSAESSLDFSQSSSLLNGGS 88

Query: 421  --NTEFKNTRTNEKVGLQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKS--RLGD 588
                ++K +R+NEK  LQ LNDRFA YI+KV +LEQQNK + AE++ L+ +  S  +LGD
Sbjct: 89   GPGGDYKLSRSNEKEQLQGLNDRFAGYIEKVHYLEQQNKEIEAEIQALRQKQASHAQLGD 148

Query: 589  LYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEETPQREEAESTLQSFRQ 768
             Y++E+RELR  ++ + ++KA+V+++ D+L EDI RL+E+ +EE   R++ E+ +++ R+
Sbjct: 149  AYDQEIRELRATLEMVNHEKAQVQLDSDHLEEDIHRLKERFEEEARLRDDTEAAIRALRK 208

Query: 769  DVDNASLARLDLERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXXXXXDM-DVSKPDLTA 945
            D++ ASL +++L++KV+SLQ+E+AFL+  H+                 +  D  K D++ 
Sbjct: 209  DIEEASLVKVELDKKVQSLQDEVAFLRSNHEEEVADLLAQIQASHITVERKDYLKTDIST 268

Query: 946  ALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLT 1125
            AL+++R Q ES + +N+ +AEEW+K ++A L+EAA +N +A+R AK+E  EYRRQ+QS +
Sbjct: 269  ALKEIRSQLESHSDQNMHQAEEWFKCRYAKLTEAAEQNKEAIRSAKEEIAEYRRQLQSKS 328

Query: 1126 CEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLL 1305
             E+++++GT ESLERQ+ ++EE    + ++YQDTI +L++E++  K EMARHLREYQDLL
Sbjct: 329  IELESVRGTKESLERQLSDIEERHNHDLSSYQDTIQQLENELRGTKWEMARHLREYQDLL 388

Query: 1306 NVKMALDIEIATYRKPLEGEESR 1374
            NVKMALDIEIA YRK LEGEE+R
Sbjct: 389  NVKMALDIEIAAYRKLLEGEETR 411


>ref|NP_066554.2| neurofilament, heavy polypeptide 200kDa [Homo sapiens]
          Length = 1020

 Score =  266 bits (681), Expect = 3e-71
 Identities = 157/387 (40%), Positives = 225/387 (58%), Gaps = 22/387 (5%)
 Frame = +1

Query: 439  TRTNEKVGLQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQ--GKSRLGDLYEEEMRE 612
            T  +EK  LQ LNDRFA YIDKVR LE  N+ L  E   L+ Q  G+S +G+LYE E+RE
Sbjct: 93   TSRSEKEQLQALNDRFAGYIDKVRQLEAHNRSLEGEAAALRQQQAGRSAMGELYEREVRE 152

Query: 613  LRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEETPQREEAESTLQSFRQDVDNASLA 792
            +R  V +L   + ++ +E+++L EDI  +R++L +E  QREEAE+  ++  +    A  A
Sbjct: 153  MRGAVLRLGAARGQLRLEQEHLLEDIAHVRQRLDDEARQREEAEAAARALARFAQEAEAA 212

Query: 793  RLDLERKVESLQEEIAFLKKLHDXXXXXX------XXXXXXXXXXXDMDVSKPDLTAALR 954
            R+DL++K ++LQEE  +L++ H                          D  K D+T+ALR
Sbjct: 213  RVDLQKKAQALQEECGYLRRHHQEEVGELLGQIQGSGAAQAQMQAETRDALKCDVTSALR 272

Query: 955  DVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEV 1134
            ++R Q E  A ++  ++EEW++ +   LSEAA  N DA+R A++E  EYRRQ+Q+ T E+
Sbjct: 273  EIRAQLEGHAVQSTLQSEEWFRVRLDRLSEAAKVNTDAMRSAQEEITEYRRQLQARTTEL 332

Query: 1135 DALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVK 1314
            +ALK T +SLERQ  E+E+    + A+YQ+ I +L  E++N K EMA  LREYQDLLNVK
Sbjct: 333  EALKSTKDSLERQRSELEDRHQADIASYQEAIQQLDAELRNTKWEMAAQLREYQDLLNVK 392

Query: 1315 MALDIEIATYRKPLEGEESRIXXXXXXXXXXXXRETNLESLPLVDTH------------- 1455
            MALDIEIA YRK LEGEE RI                L  +P V TH             
Sbjct: 393  MALDIEIAAYRKLLEGEECRIGFGPIPFSL----PEGLPKIPSVSTHIKVKSEEKIKVVE 448

Query: 1456 -SKRTLLIKTVETRDGQVINETSQHHD 1533
             S++  +I   +T + QV  E ++  +
Sbjct: 449  KSEKETVIVEEQTEETQVTEEVTEEEE 475


>ref|NP_002264.1| keratin 8 [Homo sapiens]
          Length = 483

 Score =  224 bits (571), Expect = 2e-58
 Identities = 147/467 (31%), Positives = 240/467 (51%), Gaps = 49/467 (10%)
 Frame = +1

Query: 268  SALRPSTSRSLYTSSPGGVYATRSSAVRLRSS------------------VPGVRLLQDA 393
            S  R  +SRS YTS PG   ++ SS  R+ SS                  +  V + Q  
Sbjct: 15   SGPRAFSSRS-YTSGPGSRISS-SSFSRVGSSNFRGGLGGGYGGASGMGGITAVTVNQSL 72

Query: 394  VDFSLADAINTEFKNTRTNEKVGLQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQ-- 567
            +   L   ++   +  RT EK  ++ LN++FA++IDKVRFLEQQNK+L  +   L+ Q  
Sbjct: 73   LS-PLVLEVDPNIQAVRTQEKEQIKTLNNKFASFIDKVRFLEQQNKMLETKWSLLQQQKT 131

Query: 568  GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEETPQREEAES 747
             +S + +++E  +  LRRQ++ L  +K ++E E  N+   +   + K ++E  +R E E+
Sbjct: 132  ARSNMDNMFESYINNLRRQLETLGQEKLKLEAELGNMQGLVEDFKNKYEDEINKRTEMEN 191

Query: 748  TLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXXXXXDMDVS 927
                 ++DVD A + +++LE ++E L +EI FL++L++                  MD S
Sbjct: 192  EFVLIKKDVDEAYMNKVELESRLEGLTDEINFLRQLYEEEIRELQSQISDTSVVLSMDNS 251

Query: 928  KP-DLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYR 1104
            +  D+ + + +V+ QYE +A ++  EAE  Y+ K+ +L   A ++ D LR+ K E +E  
Sbjct: 252  RSLDMDSIIAEVKAQYEDIANRSRAEAESMYQIKYEELQSLAGKHGDDLRRTKTEISEMN 311

Query: 1105 RQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHL 1284
            R +  L  E++ LKG   SLE  + + E+   +   +    +  L+  +Q  K++MAR L
Sbjct: 312  RNISRLQAEIEGLKGQRASLEAAIADAEQRGELAIKDANAKLSELEAALQRAKQDMARQL 371

Query: 1285 REYQDLLNVKMALDIEIATYRKPLEGEESRIXXXXXXXXXXXXRETNLE----------- 1431
            REYQ+L+NVK+ALDIEIATYRK LEGEESR+              +              
Sbjct: 372  REYQELMNVKLALDIEIATYRKLLEGEESRLESGMQNMSIHTKTTSGYAGGLSSAYGGLT 431

Query: 1432 -----------------SLPLVDTHSKRTLLIKTVETRDGQVINETS 1521
                             S     T S R +++K +ETRDG++++E+S
Sbjct: 432  SPGLSYSLGSSFGSGAGSSSFSRTSSSRAVVVKKIETRDGKLVSESS 478


>ref|NP_000415.1| keratin 5 [Homo sapiens]
          Length = 590

 Score =  222 bits (565), Expect = 1e-57
 Identities = 116/325 (35%), Positives = 194/325 (59%), Gaps = 5/325 (1%)
 Frame = +1

Query: 418  INTEFKNTRTNEKVGLQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQG----KSRLG 585
            I+   +  RT E+  ++ LN++FA++IDKVRFLEQQNK+L  +   L+ QG    +  L 
Sbjct: 157  IDPSIQRVRTEEREQIKTLNNKFASFIDKVRFLEQQNKVLDTKWTLLQEQGTKTVRQNLE 216

Query: 586  DLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEETPQREEAESTLQSFR 765
             L+E+ +  LRRQ+D +  ++ R++ E  N+ + +   + K ++E  +R  AE+     +
Sbjct: 217  PLFEQYINNLRRQLDSIVGERGRLDSELRNMQDLVEDFKNKYEDEINKRTTAENEFVMLK 276

Query: 766  QDVDNASLARLDLERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXXXXXDMDVSKP-DLT 942
            +DVD A + +++LE KV++L +EI F+K   D                  MD ++  DL 
Sbjct: 277  KDVDAAYMNKVELEAKVDALMDEINFMKMFFDAELSQMQTHVSDTSVVLSMDNNRNLDLD 336

Query: 943  AALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSL 1122
            + + +V+ QYE +A ++  EAE WY++K+ +L + A R+ D LR  K E  E  R +Q L
Sbjct: 337  SIIAEVKAQYEEIANRSRTEAESWYQTKYEELQQTAGRHGDDLRNTKHEITEMNRMIQRL 396

Query: 1123 TCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDL 1302
              E+D +K    +L+  + + E+   +   + ++ +  L++ +Q  K++MAR LREYQ+L
Sbjct: 397  RAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQEL 456

Query: 1303 LNVKMALDIEIATYRKPLEGEESRI 1377
            +N K+ALD+EIATYRK LEGEE R+
Sbjct: 457  MNTKLALDVEIATYRKLLEGEECRL 481


  Database: RefSeqHP
    Posted date:  Aug 2, 2006 12:57 AM
  Number of letters in database: 17,774,539
  Number of sequences in database:  39,411
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,401,073
Number of Sequences: 39411
Number of extensions: 1443642
Number of successful extensions: 8025
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 5456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7258
length of database: 17,774,539
effective HSP length: 108
effective length of database: 13,518,151
effective search space used: 7015920369
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= OVR01_0077_D07
         (1883 letters)

Database: RefSeqSP 
           1040 sequences; 434,620 total letters

Searching...done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001001535.1| muscle-specific intermediate filament desmin...   488   e-139
Alignment   gi|NP_999301.1| myosin heavy chain 2a [Sus scrofa]                    60   2e-10
Alignment   gi|NP_999020.1| beta-myosin heavy chain [Sus scrofa]                  50   2e-07
Alignment   gi|NP_999500.1| tropomyosin 4 [Sus scrofa]                            47   2e-06

>ref|NP_001001535.1| muscle-specific intermediate filament desmin [Sus scrofa]
          Length = 471

 Score =  488 bits (1255), Expect = e-139
 Identities = 254/409 (62%), Positives = 317/409 (77%), Gaps = 1/409 (0%)
 Frame = +1

Query: 316  GGVYATRSSAVRLRSSVPGVRLLQDAVDFSLADAINTEFKNTRTNEKVGLQELNDRFANY 495
            G + A+R  A R+ SS  G   L   +DFSLADA+N EF  TRTNEKV LQELNDRFANY
Sbjct: 67   GPLRASRLGATRVPSSSYGAGEL---LDFSLADAVNQEFLTTRTNEKVELQELNDRFANY 123

Query: 496  IDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDN 675
            I+KVRFLEQQN  L AE+ +LKG+  +R+ ++YEEE+RELRRQV+ LTN +ARV+VERDN
Sbjct: 124  IEKVRFLEQQNAALAAEVNRLKGREPTRVAEIYEEELRELRRQVEVLTNQRARVDVERDN 183

Query: 676  LAEDIMRLREKLQEETPQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKL 855
            L +D+ RL+ KLQEE   +EEAE+ L +FR DVD A+LAR+DLER++ESL EEIAFLKK+
Sbjct: 184  LLDDLQRLKAKLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKV 243

Query: 856  HDXXXXXXXXXXXXXXXXXDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFAD 1035
            H+                 +MD+SKPDLTAALRD+R QYE++AAKN+ EAEEWYKSK +D
Sbjct: 244  HEEEIRELQAQLQEQQVQVEMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSD 303

Query: 1036 LSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAAN 1215
            L++AAN+NNDALRQAKQE  EYR Q+QS TCE+DALKGTN+SL RQMRE+E+ FA EA+ 
Sbjct: 304  LTQAANKNNDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASG 363

Query: 1216 YQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKPLEGEESRIXXXXXX 1395
            YQD I RL++EI+++K+EMARHLREYQDLLNVKMALD+EIATYRK LEGEESRI      
Sbjct: 364  YQDNIARLEEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQT 423

Query: 1396 XXXXXXRETNLESLPLVDTHSKRTLLIKTVETRDGQVINE-TSQHHDDL 1539
                  RET+ E     + H+K+T++IKT+ETRDG+V++E T Q H+ L
Sbjct: 424  FSALNFRETSPEQRG-SEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 471


>ref|NP_999301.1| myosin heavy chain 2a [Sus scrofa]
          Length = 1939

 Score = 59.7 bits (143), Expect = 2e-10
 Identities = 69/327 (21%), Positives = 146/327 (44%), Gaps = 14/327 (4%)
 Frame = +1

Query: 439  TRTNEKVGLQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELR 618
            T +  K  L+++     + + +++  E++ + L+ +L   +G+ ++  G+ +  ++ E  
Sbjct: 1241 TVSKAKGNLEKMCRTLEDQLSELKSKEEEQQRLINDLTAQRGRLQTESGE-FSRQLDEKE 1299

Query: 619  RQVDQLTNDKARVEVERDNLAEDIMRLREKLQEETPQREEAESTLQSFRQDVDNASLARL 798
              V QL+  K           + I  L+ +L+EE   +      LQS R D D   L R 
Sbjct: 1300 ALVSQLSRGKQAY-------TQQIEELKRQLEEEIKAKNALAHALQSSRHDCD---LLRE 1349

Query: 799  DLERKVESLQE-EIAFLKKLHDXXXXXXXXXXXXXXXXXDMDVSKPDLTAALRDVRQQYE 975
              E + ES  E + A  K   +                 +++ +K  L   L+   +  E
Sbjct: 1350 QYEEEQESKAELQRALSKANTEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQAAEEHVE 1409

Query: 976  SVAAK--NLQEAEEWYKSKFADLSEAANRNNDALRQA-KQESN------EYRRQVQSLTC 1128
            +V AK  +L++ ++  +++  DL     R N A     K++ N      E++++ +    
Sbjct: 1410 AVNAKCASLEKTKQRLQNEVEDLMLDVERTNAACAALDKKQRNFDKILAEWKQKYEETHA 1469

Query: 1129 EVDALKGTNESLERQMREMEENFAVEAANYQDTIGR----LQDEIQNMKEEMARHLREYQ 1296
            E++A +    SL  ++ +M +N   E+ +  +T+ R    LQ EI ++ E++A   +   
Sbjct: 1470 ELEASQKEARSLGTELFKM-KNAYEESLDQLETLKRENKNLQQEISDLTEQIAEGGKRIH 1528

Query: 1297 DLLNVKMALDIEIATYRKPLEGEESRI 1377
            +L  +K  ++ E +  +  LE  E+ +
Sbjct: 1529 ELEKIKKQVEQEKSEIQAALEEAEASL 1555



 Score = 52.0 bits (123), Expect = 5e-08
 Identities = 48/277 (17%), Positives = 123/277 (44%), Gaps = 11/277 (3%)
 Frame = +1

Query: 529  KILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 708
            ++ LA++E+ K   ++++ +L  EEM  L   + +LT +K  ++       +D+    +K
Sbjct: 962  ELTLAKVEKEKHATENKVKNL-TEEMAGLDETIAKLTKEKKALQEAHQQTLDDLQAEEDK 1020

Query: 709  LQEETPQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKK----LHDXXXXX 876
            +   T  + + E  +      ++     R+DLER    L+ ++   ++    + +     
Sbjct: 1021 VNTLTKAKTKLEQQVDDLEGSLEQEKKLRMDLERAKRKLEGDLKLAQESIMDIENEKQQL 1080

Query: 877  XXXXXXXXXXXXDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANR 1056
                        ++     D  A    ++++ + + A+ ++E EE  +++ A  ++A  +
Sbjct: 1081 DEKLKKKEFEISNLQSKIEDEQALAIQLQKKIKELQAR-IEELEEEIEAERASRAKAEKQ 1139

Query: 1057 NNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEE----NFAVEAA---N 1215
             +D  R+ ++ S        + + +++  K      ++  R++EE    + A  AA    
Sbjct: 1140 RSDLSRELEEISERLEEAGGATSAQIEMNKKREAEFQKMRRDLEEATLQHEATAAALRKK 1199

Query: 1216 YQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALD 1326
            + D++  L ++I N++    +  +E  ++   KM +D
Sbjct: 1200 HADSVAELGEQIDNLQRVKQKLEKEKSEM---KMEID 1233


>ref|NP_999020.1| beta-myosin heavy chain [Sus scrofa]
          Length = 1935

 Score = 49.7 bits (117), Expect = 2e-07
 Identities = 67/348 (19%), Positives = 151/348 (43%), Gaps = 14/348 (4%)
 Frame = +1

Query: 376  RLLQDAVDFSLADAINTEFK-NTRTNEKVGLQELNDRFANYIDKVRFLEQQNKILLAELE 552
            R L+D ++   + A  T+   N  T+++  LQ  N   +  +D       + + L+++L 
Sbjct: 1250 RTLEDQMNEHRSKAEETQRSVNDLTSQRAKLQTENGELSRQLD-------EKEALISQLT 1302

Query: 553  QLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEETPQR 732
            +    GK      Y +++ +L+RQ+++    K  +     +       LRE+ +EET  +
Sbjct: 1303 R----GKLT----YTQQLEDLKRQLEEEVKAKNALAHALQSARHAADLLREQYEEETETK 1354

Query: 733  EEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXXXXX 912
             E +  L        N+ +A+   + + +++Q                            
Sbjct: 1355 AELQRVLSK-----ANSEVAQWRTKYETDAIQR-------------------------TE 1384

Query: 913  DMDVSKPDLTAALRDVRQQYESVAAK--NLQEAEEWYKSKFADLSEAANRNNDALRQA-K 1083
            +++ +K  L   L+D  +  E+V AK  +L++ +   +++  DL     R+N A     K
Sbjct: 1385 ELEEAKKKLAQRLQDAEEAVEAVNAKCSSLEKTKHRLQNEIEDLMVDVERSNAAAAALDK 1444

Query: 1084 QESN------EYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGR--- 1236
            ++ N      E++++ +    E+++ +    SL  ++ ++ +N   E+  + +T  R   
Sbjct: 1445 KQRNFDKILAEWKQKYEESQSELESSQKEARSLSTELFKL-KNAYEESLEHLETSKRENK 1503

Query: 1237 -LQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKPLEGEESRI 1377
             LQ+EI ++ E++    +   +L  V+  L+ E    +  LE  E+ +
Sbjct: 1504 NLQEEISDLTEQLGSSGKTIHELEKVRKQLEAEKLELQSALEESEASL 1551



 Score = 47.0 bits (110), Expect = 2e-06
 Identities = 47/290 (16%), Positives = 117/290 (40%), Gaps = 7/290 (2%)
 Frame = +1

Query: 529  KILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 708
            ++ LA++E+ K   ++++ +L  EEM  L   + +LT +K  ++       +D+    +K
Sbjct: 958  ELTLAKVEKEKHATENKVKNL-TEEMAGLDEIIAKLTKEKKALQEAHQQALDDLQAEEDK 1016

Query: 709  LQEETPQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDXXXXXXXXX 888
            +   T  + + E  +      ++     R+DLER    L+ ++   ++            
Sbjct: 1017 VNTLTKAKVKLEQHVDDLAGSLEQEKKVRMDLERAKRKLEGDLKLTQE--------SIMD 1068

Query: 889  XXXXXXXXDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDA 1068
                    D  + K D      + R + E      LQ+  +  +++  +L E       A
Sbjct: 1069 LENDKQQLDERLKKKDFELNALNARIEDEQALGSQLQKKLKELQARIEELEEELEAERTA 1128

Query: 1069 LRQAKQESNEYRRQVQSLTCEVDALKGT-------NESLERQMREMEENFAVEAANYQDT 1227
              + ++  ++  R+++ ++  ++   G        N+  E + ++M  +       ++ T
Sbjct: 1129 RAKVEKLRSDLSRELEEISERLEEAGGATSVQIEMNKKREAEFQKMRRDLEEATLQHEAT 1188

Query: 1228 IGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKPLEGEESRI 1377
               L+ +  +   E+   +    +L  VK  L+ E + ++  L+   S +
Sbjct: 1189 AAALRKKHADSVAELGEQI---DNLQRVKQKLEKEKSEFKLELDDVTSNM 1235


>ref|NP_999500.1| tropomyosin 4 [Sus scrofa]
          Length = 248

 Score = 46.6 bits (109), Expect = 2e-06
 Identities = 39/169 (23%), Positives = 78/169 (46%), Gaps = 7/169 (4%)
 Frame = +1

Query: 349 RLRSSVPGVRLLQDAVDFSLADAINTEFKNTRTNEKVGLQELNDRFANYIDKV---RFLE 519
           RL +++  +   + A D S       E +  +  EK+ +QE+  + A +I +    ++ E
Sbjct: 69  RLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEE 128

Query: 520 QQNKILLAELEQLKGQGKSRLGDL----YEEEMRELRRQVDQLTNDKARVEVERDNLAED 687
              K+++ E E  + + ++ + +L     EEE++ +   +  L     +   + D   E+
Sbjct: 129 VARKLVILEGELERAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYEEE 188

Query: 688 IMRLREKLQEETPQREEAESTLQSFRQDVDNASLARLDLERKVESLQEE 834
           I  L +KL+E   + E AE T+    + +D       DLE K+   +EE
Sbjct: 189 IKLLSDKLKEAETRAEFAERTVAKLEKTID-------DLEEKLAQAKEE 230


  Database: RefSeqSP
    Posted date:  Aug 1, 2006  7:14 PM
  Number of letters in database: 434,620
  Number of sequences in database:  1040
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,373,544
Number of Sequences: 1040
Number of extensions: 31488
Number of successful extensions: 126
Number of sequences better than 1.0e-05: 4
Number of HSP's better than  0.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 434,620
effective HSP length: 82
effective length of database: 349,340
effective search space used: 190390300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= OVR01_0077_D07
         (1883 letters)

Database: RefSeqMP 
           45,328 sequences; 21,768,885 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_035831.2| vimentin [Mus musculus]                              742   0.0  
Alignment   gi|NP_034173.1| desmin [Mus musculus]                                485   e-137
Alignment   gi|NP_034407.2| glial fibrillary acidic protein [Mus musculus]       447   e-125
Alignment   gi|NP_038667.1| peripherin 1 [Mus musculus]                          431   e-120
Alignment   gi|NP_666212.2| internexin neuronal intermediate filament prote...   344   2e-94
Alignment   gi|NP_035040.1| neurofilament, light polypeptide [Mus musculus]      320   4e-87
Alignment   gi|NP_032717.1| neurofilament 3, medium [Mus musculus]               311   2e-84
Alignment   gi|NP_035034.1| neurofilament, heavy polypeptide [Mus musculus]      268   1e-71
Alignment   gi|XP_926136.1| PREDICTED: similar to neurofilament, heavy poly...   232   1e-60
Alignment   gi|XP_926145.1| PREDICTED: similar to neurofilament, heavy poly...   232   1e-60

>ref|NP_035831.2| vimentin [Mus musculus]
          Length = 466

 Score =  742 bits (1916), Expect = 0.0
 Identities = 393/453 (86%), Positives = 397/453 (87%)
 Frame = +1

Query: 184  MFGGPGXXXXXXXXXXXXXXXXXXXXLGSALRPSTSRSLYTSSPGGVYATRSSAVRLRSS 363
            MFGG G                    LGSALRPSTSRSLY+SSPGG Y TRSSAVRLRSS
Sbjct: 14   MFGGSGTSSRPSSNRSYVTTSTRTYSLGSALRPSTSRSLYSSSPGGAYVTRSSAVRLRSS 73

Query: 364  VPGVRLLQDAVDFSLADAINTEFKNTRTNEKVGLQELNDRFANYIDKVRFLEQQNKILLA 543
            VPGVRLLQD+VDFSLADAINTEFKNTRTNEKV LQELNDRFANYIDKVRFLEQQNKILLA
Sbjct: 74   VPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA 133

Query: 544  ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEET 723
            ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEE 
Sbjct: 134  ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM 193

Query: 724  PQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXX 903
             QREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHD              
Sbjct: 194  LQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQEQH 253

Query: 904  XXXDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK 1083
               D+DVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK
Sbjct: 254  VQIDVDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK 313

Query: 1084 QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK 1263
            QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFA+EAANYQDTIGRLQDEIQNMK
Sbjct: 314  QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFALEAANYQDTIGRLQDEIQNMK 373

Query: 1264 EEMARHLREYQDLLNVKMALDIEIATYRKPLEGEESRIXXXXXXXXXXXXRETNLESLPL 1443
            EEMARHLREYQDLLNVKMALDIEIATYRK LEGEESRI            RETNLESLPL
Sbjct: 374  EEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLPLPTFSSLNLRETNLESLPL 433

Query: 1444 VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE 1542
            VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE
Sbjct: 434  VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE 466


>ref|NP_034173.1| desmin [Mus musculus]
          Length = 469

 Score =  485 bits (1248), Expect = e-137
 Identities = 255/409 (62%), Positives = 316/409 (77%), Gaps = 1/409 (0%)
 Frame = +1

Query: 316  GGVYATRSSAVRLRSSVPGVRLLQDAVDFSLADAINTEFKNTRTNEKVGLQELNDRFANY 495
            GG+ + RSS  RL ++        + +DFSLADA+N EF  TRTNEKV LQELNDRFANY
Sbjct: 64   GGLGSLRSS--RLGTTRAPSYGAGELLDFSLADAVNQEFLATRTNEKVELQELNDRFANY 121

Query: 496  IDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDN 675
            I+KVRFLEQQN  L AE+ +LKG+  +R+ +LYEEEMRELRRQV+ LTN +ARV+VERDN
Sbjct: 122  IEKVRFLEQQNAALAAEVNRLKGREPTRVAELYEEEMRELRRQVEVLTNQRARVDVERDN 181

Query: 676  LAEDIMRLREKLQEETPQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKL 855
            L +D+ RL+ KLQEE   REEAE+ L +FR DVD A+LAR+DLER++ESL EEIAFLKK+
Sbjct: 182  LIDDLQRLKAKLQEEIQLREEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKV 241

Query: 856  HDXXXXXXXXXXXXXXXXXDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFAD 1035
            H+                 +MD+SKPDLTAALRD+R QYE++AAKN+ EAEEWYKSK +D
Sbjct: 242  HEEEIRELQAQLQEQQVQVEMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSD 301

Query: 1036 LSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAAN 1215
            L++AAN+NNDALRQAKQE  EYR Q+QS TCE+DALKGTN+SL RQMRE+E+ FA EA  
Sbjct: 302  LTQAANKNNDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEANG 361

Query: 1216 YQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKPLEGEESRIXXXXXX 1395
            YQD I RL++EI+++K+EMARHLREYQDLLNVKMALD+EIATYRK LEGEESRI      
Sbjct: 362  YQDNIARLEEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQT 421

Query: 1396 XXXXXXRETNLESLPLVDTHSKRTLLIKTVETRDGQVINE-TSQHHDDL 1539
                  RET+ E     + H+K+T++IKT+ETRDG+V++E T Q H+ L
Sbjct: 422  FSALNFRETSPEQRG-SEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 469


>ref|NP_034407.2| glial fibrillary acidic protein [Mus musculus]
          Length = 430

 Score =  447 bits (1150), Expect = e-125
 Identities = 222/382 (58%), Positives = 297/382 (77%)
 Frame = +1

Query: 394  VDFSLADAINTEFKNTRTNEKVGLQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGK 573
            VDFSLA A+N  FK TR +E+  + ELNDRFA+YI+KVRFLEQQNK L AEL QL+ +  
Sbjct: 47   VDFSLAGALNAGFKETRASERAEMMELNDRFASYIEKVRFLEQQNKALAAELNQLRAKEP 106

Query: 574  SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEETPQREEAESTL 753
            ++L D+Y+ E+RELR ++DQLT + AR+EVERDN A+D+  LR+KLQ+ET  R EAE+ L
Sbjct: 107  TKLADVYQAELRELRLRLDQLTANSARLEVERDNFAQDLGTLRQKLQDETNLRLEAENNL 166

Query: 754  QSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXXXXXDMDVSKP 933
             ++RQ+ D A+LAR+DLERKVESL+EEI FL+K+++                 +MDV+KP
Sbjct: 167  AAYRQEADEATLARVDLERKVESLEEEIQFLRKIYEEEVRELREQLAQQQVHVEMDVAKP 226

Query: 934  DLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQV 1113
            DLTAALR++R QYE+VA  N+QE EEWY+SKFADL++AA+RN + LRQAK E+N+YRRQ+
Sbjct: 227  DLTAALREIRTQYEAVATSNMQETEEWYRSKFADLTDAASRNAELLRQAKHEANDYRRQL 286

Query: 1114 QSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREY 1293
            Q+LTC++++L+GTNESLERQMRE EE  A E+A+YQ+ + RL++E Q++KEEMARHL+EY
Sbjct: 287  QALTCDLESLRGTNESLERQMREQEERHARESASYQEALARLEEEGQSLKEEMARHLQEY 346

Query: 1294 QDLLNVKMALDIEIATYRKPLEGEESRIXXXXXXXXXXXXRETNLESLPLVDTHSKRTLL 1473
            QDLLNVK+ALDIEIATYRK LEGEE+RI            RET+L++  + + H KR ++
Sbjct: 347  QDLLNVKLALDIEIATYRKLLEGEENRITIPVQTFSNLQIRETSLDTKSVSEGHLKRNIV 406

Query: 1474 IKTVETRDGQVINETSQHHDDL 1539
            +KTVE RDG+VI ++ Q H D+
Sbjct: 407  VKTVEMRDGEVIKDSKQEHKDV 428


>ref|NP_038667.1| peripherin 1 [Mus musculus]
          Length = 507

 Score =  431 bits (1107), Expect = e-120
 Identities = 244/465 (52%), Positives = 316/465 (67%), Gaps = 40/465 (8%)
 Frame = +1

Query: 268  SALRPSTSRSLYTSSPGGVYATRSSAVRLRS----SVPGVRLLQDAVDFSLADAINTEFK 435
            S+ R S+SR L + SP       SS+ RL S        +RL  + +DFS+A+A+N EF 
Sbjct: 43   SSSRFSSSRLLGSGSP-------SSSARLGSFRAPRAGALRLPSERLDFSMAEALNQEFL 95

Query: 436  NTRTNEKVGLQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMREL 615
             TR+NEK  LQELNDRFAN+I+KVRFLEQQN  L  EL Q +GQ  +R   L ++E+REL
Sbjct: 96   ATRSNEKQELQELNDRFANFIEKVRFLEQQNAALRGELSQARGQEPARADQLCQQELREL 155

Query: 616  RRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEETPQREEAESTLQSFRQDVDNASLAR 795
            RR+++ L  ++ RV+VERD LAED+  L+++L+EET +RE+AE  L  FR+DVD+A+L+R
Sbjct: 156  RRELELLGRERDRVQVERDGLAEDLAALKQRLEEETRKREDAEHNLVLFRKDVDDATLSR 215

Query: 796  LDLERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXXXXX-DMDVS-KPDLTAALRDVRQQ 969
            L+LERK+ESL +EI FLKKLH+                  +++ + KP+LTAALRD+R Q
Sbjct: 216  LELERKIESLMDEIEFLKKLHEEELRDLQVSVESQQVQQVEVEATVKPELTAALRDIRAQ 275

Query: 970  YESVAAKNLQEAEEWYKSK--------------------------------FADLSEAAN 1053
            YE++AAKNLQEAEEWYKSK                                +ADLS+AAN
Sbjct: 276  YENIAAKNLQEAEEWYKSKVREHWGNPGGPRVGRHWEWRCASQPGLSATAQYADLSDAAN 335

Query: 1054 RNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIG 1233
            RN++ALRQAKQE NE RRQ+QSLTCEVD L+GTNE+L RQ+RE+EE FA+EA  YQ    
Sbjct: 336  RNHEALRQAKQEMNESRRQIQSLTCEVDGLRGTNEALLRQLRELEEQFALEAGGYQAGAA 395

Query: 1234 RLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKPLEGEESRIXXXXXXXXXXXX 1413
            RL++E++ +KEEMARHLREYQ+LLNVKMALDIEIATYRK LEGEESRI            
Sbjct: 396  RLEEELRQLKEEMARHLREYQELLNVKMALDIEIATYRKLLEGEESRISVPVHSFASLSL 455

Query: 1414 RETNLESLPLVDTHSKRTLLIKTVETRDGQVINETSQ--HHDDLE 1542
            + T  E  PL D+HSK+ +LI+T+ETRDG+ +   SQ   H DL+
Sbjct: 456  KTTVPEMEPLQDSHSKKMVLIRTIETRDGEKVVTESQKEQHSDLD 500


>ref|NP_666212.2| internexin neuronal intermediate filament protein, alpha [Mus
            musculus]
          Length = 501

 Score =  344 bits (883), Expect = 2e-94
 Identities = 194/376 (51%), Positives = 259/376 (68%), Gaps = 6/376 (1%)
 Frame = +1

Query: 265  GSALRPSTSRSLYTSSPGGVYATRSSAVRLRSSVPGVRL-LQDAVDFSLADAINTEFKNT 441
            GS    S SRS   S+     A  SSA  L   +   RL   D +D S A A   E+K  
Sbjct: 36   GSFRSQSLSRSNVAST-----AACSSASSLGLGLAYRRLPASDGLDLSQAAARTNEYKII 90

Query: 442  RTNEKVGLQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGK--SRLGDLYEEEMREL 615
            RTNEK  LQ LNDRFA +I+KV  LE QN+ L AEL  L+ +    SR+G L++ E REL
Sbjct: 91   RTNEKEQLQGLNDRFAVFIEKVHQLETQNRALEAELAALRQRHAEPSRVGQLFQRERREL 150

Query: 616  RRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEETPQREEAESTLQSFRQDVDNASLAR 795
            R Q+++ ++ +A+  +ERD LAE++ RLR + +EE+  RE AE  L++ ++DVD A+LAR
Sbjct: 151  RAQLEEASSARAQALLERDGLAEEVQRLRARCEEESRGREGAERALKAQQRDVDGATLAR 210

Query: 796  LDLERKVESLQEEIAFLKKLHDXXXX---XXXXXXXXXXXXXDMDVSKPDLTAALRDVRQ 966
            LDLE+KVESL +E+AF++++HD                    D+ V+KPDLT+ALR++R 
Sbjct: 211  LDLEKKVESLLDELAFVRQVHDEEVAELLATLQASSQAAAEVDVAVAKPDLTSALREIRA 270

Query: 967  QYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALK 1146
            QYES+AAKNLQ AEEWYKSKFA+L+E A R  +A+R +++E +EYRR VQ+ T E++ L+
Sbjct: 271  QYESLAAKNLQSAEEWYKSKFANLNELAARTTEAIRASREEIHEYRRHVQARTIEIEGLR 330

Query: 1147 GTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALD 1326
            G NESLERQ+ E+EE  + E A YQD+IG+L+ +++N K EMARHLREYQDLLNVKMALD
Sbjct: 331  GANESLERQILELEERHSAEVAGYQDSIGQLESDLRNTKSEMARHLREYQDLLNVKMALD 390

Query: 1327 IEIATYRKPLEGEESR 1374
            IEIA YRK LEG E+R
Sbjct: 391  IEIAAYRKLLEGNETR 406


>ref|NP_035040.1| neurofilament, light polypeptide [Mus musculus]
          Length = 543

 Score =  320 bits (819), Expect = 4e-87
 Identities = 173/368 (47%), Positives = 249/368 (67%), Gaps = 3/368 (0%)
 Frame = +1

Query: 283  STSRSLYTSSPGGVYATRSSAVRLRSSVPGVRLLQDAVDFSLADAINTEFKNTRTNEKVG 462
            ST+RS Y+S    V ++ S      SS   +    + +D S   AI+ + K+ RT EK  
Sbjct: 34   STARSAYSSYSAPVSSSLSVRRSYSSSSGSLMPSLENLDLSQVAAISNDLKSIRTQEKAQ 93

Query: 463  LQELNDRFANYIDKVRFLEQQNKILLAELEQL--KGQGKSRLGDLYEEEMRELRRQVDQL 636
            LQ+LNDRFA++I++V  LEQQNK+L AEL  L  K    SR   LYE+E+R+LR   +  
Sbjct: 94   LQDLNDRFASFIERVHELEQQNKVLEAELLVLRQKHSEPSRFRALYEQEIRDLRLAAEDA 153

Query: 637  TNDKARVEVERDNLAEDIMRLREKLQEETPQREEAESTLQSFRQDVDNASLARLDLERKV 816
            TN+K  ++ ER+ L E +  L+ + +EE   RE+AE  L   R+  D A+LAR +LE+++
Sbjct: 154  TNEKQALQGEREGLEETLRNLQARYEEEVLSREDAEGRLMEARKGADEAALARAELEKRI 213

Query: 817  ESLQEEIAFLKKLHDXXXXXXXXXXXXXXXXXDMDVS-KPDLTAALRDVRQQYESVAAKN 993
            +SL +EIAFLKK+H+                 +MDVS KPDL+AAL+D+R QYE +AAKN
Sbjct: 214  DSLMDEIAFLKKVHEEEIAELQAQIQYAQISVEMDVSSKPDLSAALKDIRAQYEKLAAKN 273

Query: 994  LQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQ 1173
            +Q AEEW+KS+F  L+E+A +N DA+R AK E +E RR +++ T E++A +G NE+LE+Q
Sbjct: 274  MQNAEEWFKSRFTVLTESAAKNTDAVRAAKDEVSESRRLLKAKTLEIEACRGMNEALEKQ 333

Query: 1174 MREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKP 1353
            ++E+E+    + +  QDTI +L++E+++ K EMAR+L+EYQDLLNVKMALDIEIA YRK 
Sbjct: 334  LQELEDKQNADISAMQDTINKLENELRSTKSEMARYLKEYQDLLNVKMALDIEIAAYRKL 393

Query: 1354 LEGEESRI 1377
            LEGEE+R+
Sbjct: 394  LEGEETRL 401


>ref|NP_032717.1| neurofilament 3, medium [Mus musculus]
          Length = 849

 Score =  311 bits (796), Expect = 2e-84
 Identities = 163/373 (43%), Positives = 258/373 (69%), Gaps = 8/373 (2%)
 Frame = +1

Query: 280  PSTSRSLYTSSPGGVYATRSSAVRLRSSVPGVRLLQDAVDFSLADAI-----NTEFKNTR 444
            PST  S YT S        + A RL  S   +   + ++DFS + ++       ++K +R
Sbjct: 46   PSTVSSSYTRS--------AVAPRLAYSSAMLSSAESSLDFSQSSSLLNGGSGGDYKLSR 97

Query: 445  TNEKVGLQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKS--RLGDLYEEEMRELR 618
            +NEK  LQ LNDRFA YI+KV +LEQQNK + AE++ L+ +  S  +LGD Y++E+RELR
Sbjct: 98   SNEKEQLQGLNDRFAGYIEKVHYLEQQNKEIEAEIQALRQKQASHAQLGDAYDQEIRELR 157

Query: 619  RQVDQLTNDKARVEVERDNLAEDIMRLREKLQEETPQREEAESTLQSFRQDVDNASLARL 798
              ++ + ++KA+V+++ D+L EDI RL+E+ +EE   R++ E+ +++ R+D++ +S+ ++
Sbjct: 158  ATLEMVNHEKAQVQLDSDHLEEDIHRLKERFEEEARLRDDTEAAIRALRKDIEESSMVKV 217

Query: 799  DLERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXXXXXDM-DVSKPDLTAALRDVRQQYE 975
            +L++KV+SLQ+E+AFL++ H+                 +  D  K D++ AL+++R Q E
Sbjct: 218  ELDKKVQSLQDEVAFLRRNHEEEVADLLAQIQASHITVERKDYLKTDISTALKEIRSQLE 277

Query: 976  SVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTN 1155
              + +N+ +AEEW+K ++A L+EAA +N +A+R AK+E  EYRRQ+QS + E+++++GT 
Sbjct: 278  CHSDQNMHQAEEWFKCRYAKLTEAAEQNKEAIRSAKEEIAEYRRQLQSKSIELESVRGTK 337

Query: 1156 ESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEI 1335
            ESLERQ+ ++EE    + ++YQDTI +L++E++  K EMARHLREYQDLLNVKMALDIEI
Sbjct: 338  ESLERQLSDIEERHNHDLSSYQDTIQQLENELRGTKWEMARHLREYQDLLNVKMALDIEI 397

Query: 1336 ATYRKPLEGEESR 1374
            A YRK LEGEE+R
Sbjct: 398  AAYRKLLEGEETR 410


>ref|NP_035034.1| neurofilament, heavy polypeptide [Mus musculus]
          Length = 1072

 Score =  268 bits (686), Expect = 1e-71
 Identities = 155/364 (42%), Positives = 219/364 (60%), Gaps = 10/364 (2%)
 Frame = +1

Query: 448  NEKVGLQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQ--GKSRLGDLYEEEMRELRR 621
            +EK  LQ LNDRFA YIDKVR LE  N+ L  E   L+ Q  G++ +G+LYE E+RE+R 
Sbjct: 94   SEKEQLQALNDRFAGYIDKVRQLEAHNRSLEGEAAALRQQQAGRAAMGELYEREVREMRG 153

Query: 622  QVDQLTNDKARVEVERDNLAEDIMRLREKLQEETPQREEAESTLQSFRQDVDNASLARLD 801
             V +L   + ++ +E+++L EDI  +R++L EE  QREEAE+  ++  +    A  AR++
Sbjct: 154  AVLRLGAARGQLRLEQEHLLEDIAHVRQRLDEEARQREEAEAAARALARFAQEAEAARVE 213

Query: 802  LERKVESLQEEIAFLKKLHDXXXXXXXX------XXXXXXXXXDMDVSKPDLTAALRDVR 963
            L++K ++LQEE  +L++ H                          D  K D+T+ALR++R
Sbjct: 214  LQKKAQALQEECGYLRRHHQEEVGELLGQIQGCGAAQAQAQAEARDALKCDVTSALREIR 273

Query: 964  QQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDAL 1143
             Q E  A ++  ++EEW++ +   LSEAA  N DA+R A++E  EYRRQ+Q+ T E++AL
Sbjct: 274  AQLEGHAVQSTLQSEEWFRVRLDRLSEAAKVNTDAMRSAQEEITEYRRQLQARTTELEAL 333

Query: 1144 KGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMAL 1323
            K T ESLERQ  E+E+    + A+YQD I +L  E++N K EMA  LREYQDLLNVKMAL
Sbjct: 334  KSTKESLERQRSELEDRHQADIASYQDAIQQLDSELRNTKWEMAAQLREYQDLLNVKMAL 393

Query: 1324 DIEIATYRKPLEGEESRIXXXXXXXXXXXXRETNLESLPLVDTH--SKRTLLIKTVETRD 1497
            DIEIA YRK LEGEE RI                L  +P + TH   K   +IK VE  +
Sbjct: 394  DIEIAAYRKLLEGEECRIGFGPSPFSLT----EGLPKIPSISTHIKVKSEEMIKVVEKSE 449

Query: 1498 GQVI 1509
             + +
Sbjct: 450  KETV 453


>ref|XP_926136.1| PREDICTED: similar to neurofilament, heavy polypeptide isoform 3 [Mus
            musculus]
          Length = 903

 Score =  232 bits (591), Expect = 1e-60
 Identities = 131/318 (41%), Positives = 190/318 (59%), Gaps = 8/318 (2%)
 Frame = +1

Query: 580  LGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEETPQREEAESTLQS 759
            +G+LYE E+RE+R  V +L   + ++ +E+++L EDI  +R++L EE  QREEAE+  ++
Sbjct: 1    MGELYEREVREMRGAVLRLGAARGQLRLEQEHLLEDIAHVRQRLDEEARQREEAEAAARA 60

Query: 760  FRQDVDNASLARLDLERKVESLQEEIAFLKKLHDXXXXXXXX------XXXXXXXXXDMD 921
              +    A  AR++L++K ++LQEE  +L++ H                          D
Sbjct: 61   LARFAQEAEAARVELQKKAQALQEECGYLRRHHQEEVGELLGQIQGCGAAQAQAQAEARD 120

Query: 922  VSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEY 1101
              K D+T+ALR++R Q E  A ++  ++EEW++ +   LSEAA  N DA+R A++E  EY
Sbjct: 121  ALKCDVTSALREIRAQLEGHAVQSTLQSEEWFRVRLDRLSEAAKVNTDAMRSAQEEITEY 180

Query: 1102 RRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARH 1281
            RRQ+Q+ T E++ALK T ESLERQ  E+E+    + A+YQD I +L  E++N K EMA  
Sbjct: 181  RRQLQARTTELEALKSTKESLERQRSELEDRHQADIASYQDAIQQLDSELRNTKWEMAAQ 240

Query: 1282 LREYQDLLNVKMALDIEIATYRKPLEGEESRIXXXXXXXXXXXXRETNLESLPLVDTH-- 1455
            LREYQDLLNVKMALDIEIA YRK LEGEE RI                L  +P + TH  
Sbjct: 241  LREYQDLLNVKMALDIEIAAYRKLLEGEECRIGFGPSPFSLT----EGLPKIPSISTHIK 296

Query: 1456 SKRTLLIKTVETRDGQVI 1509
             K   +IK VE  + + +
Sbjct: 297  VKSEEMIKVVEKSEKETV 314


>ref|XP_926145.1| PREDICTED: similar to neurofilament, heavy polypeptide isoform 4 [Mus
            musculus]
          Length = 877

 Score =  232 bits (591), Expect = 1e-60
 Identities = 131/318 (41%), Positives = 190/318 (59%), Gaps = 8/318 (2%)
 Frame = +1

Query: 580  LGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEETPQREEAESTLQS 759
            +G+LYE E+RE+R  V +L   + ++ +E+++L EDI  +R++L EE  QREEAE+  ++
Sbjct: 1    MGELYEREVREMRGAVLRLGAARGQLRLEQEHLLEDIAHVRQRLDEEARQREEAEAAARA 60

Query: 760  FRQDVDNASLARLDLERKVESLQEEIAFLKKLHDXXXXXXXX------XXXXXXXXXDMD 921
              +    A  AR++L++K ++LQEE  +L++ H                          D
Sbjct: 61   LARFAQEAEAARVELQKKAQALQEECGYLRRHHQEEVGELLGQIQGCGAAQAQAQAEARD 120

Query: 922  VSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEY 1101
              K D+T+ALR++R Q E  A ++  ++EEW++ +   LSEAA  N DA+R A++E  EY
Sbjct: 121  ALKCDVTSALREIRAQLEGHAVQSTLQSEEWFRVRLDRLSEAAKVNTDAMRSAQEEITEY 180

Query: 1102 RRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARH 1281
            RRQ+Q+ T E++ALK T ESLERQ  E+E+    + A+YQD I +L  E++N K EMA  
Sbjct: 181  RRQLQARTTELEALKSTKESLERQRSELEDRHQADIASYQDAIQQLDSELRNTKWEMAAQ 240

Query: 1282 LREYQDLLNVKMALDIEIATYRKPLEGEESRIXXXXXXXXXXXXRETNLESLPLVDTH-- 1455
            LREYQDLLNVKMALDIEIA YRK LEGEE RI                L  +P + TH  
Sbjct: 241  LREYQDLLNVKMALDIEIAAYRKLLEGEECRIGFGPSPFSLT----EGLPKIPSISTHIK 296

Query: 1456 SKRTLLIKTVETRDGQVI 1509
             K   +IK VE  + + +
Sbjct: 297  VKSEEMIKVVEKSEKETV 314


  Database: RefSeqMP
    Posted date:  Aug 2, 2006 12:58 AM
  Number of letters in database: 21,768,885
  Number of sequences in database:  45,328
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,265,871
Number of Sequences: 45328
Number of extensions: 1636529
Number of successful extensions: 10356
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 6063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8550
length of database: 21,768,885
effective HSP length: 110
effective length of database: 16,782,805
effective search space used: 8676710185
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)