Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0035_D10
(1838 letters)
Database: RefSeqBP
33,508 sequences; 16,112,626 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001015567.1| serine/threonine kinase receptor associated ... 653 0.0
Alignment gi|NP_001015628.1| eukaryotic translation initiation factor 3, ... 87 4e-17
Alignment gi|XP_608583.2| PREDICTED: similar to CG7568-PA [Bos taurus] 86 1e-16
Alignment gi|NP_001033649.1| WD repeat domain 51A [Bos taurus] 86 1e-16
Alignment gi|XP_594126.2| PREDICTED: similar to TBP-associated factor 5 [... 77 3e-14
Alignment gi|XP_603483.2| PREDICTED: similar to WD repeat domain 51B [Bos... 77 6e-14
Alignment gi|NP_001033662.1| smu-1 suppressor of mec-8 and unc-52 homolog... 70 6e-12
Alignment gi|XP_613467.2| PREDICTED: similar to Coatomer alpha subunit (A... 68 2e-11
Alignment gi|XP_882656.1| PREDICTED: similar to Coatomer alpha subunit (A... 68 2e-11
Alignment gi|XP_882505.1| PREDICTED: similar to Coatomer alpha subunit (A... 68 2e-11
>ref|NP_001015567.1| serine/threonine kinase receptor associated protein [Bos taurus]
Length = 350
Score = 653 bits (1684), Expect = 0.0
Identities = 317/350 (90%), Positives = 321/350 (91%)
Frame = +2
Query: 308 MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKG 487
MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKG
Sbjct: 1 MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKG 60
Query: 488 AVWGATLNXXXXXXXXXXXXXXXXVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQ 667
AVWGATLN VWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQ
Sbjct: 61 AVWGATLNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQ 120
Query: 668 DKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQILSADDKTVRLWDHATMTEVKSL 847
DKLLRIYDLNKPEAEPKEISGH+SGIKKALWCSEDKQILSADDKTVRLWDHATMTEVKSL
Sbjct: 121 DKLLRIYDLNKPEAEPKEISGHTSGIKKALWCSEDKQILSADDKTVRLWDHATMTEVKSL 180
Query: 848 NFNMSVSSMEYIPEGEILVITYGRSIAFHSAISLDPIKSFEAPATINSASLHPEKEFLVA 1027
NFNMSVSSMEYIPEGEILVITYGRSIAFHSA+SLDPIKSFEAPATINSASLHPEKEF+VA
Sbjct: 181 NFNMSVSSMEYIPEGEILVITYGRSIAFHSAVSLDPIKSFEAPATINSASLHPEKEFVVA 240
Query: 1028 GGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQTVVGKTY 1207
GGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQTVVGKTY
Sbjct: 241 GGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQTVVGKTY 300
Query: 1208 GLWKCVLPEEDSGELAKPKISFPXXXXXXXXXXXXXNSDSIYSSTPEVKA 1357
GLWKCVLPEEDSGELAKPKI+FP NSDSIYSSTPEVKA
Sbjct: 301 GLWKCVLPEEDSGELAKPKINFPETAEEELEEIASENSDSIYSSTPEVKA 350
>ref|NP_001015628.1| eukaryotic translation initiation factor 3, subunit 2 beta, 36kDa
[Bos taurus]
Length = 325
Score = 87.0 bits (214), Expect = 4e-17
Identities = 75/322 (23%), Positives = 127/322 (39%), Gaps = 37/322 (11%)
Frame = +2
Query: 326 PLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGAT 505
P+ GH R + + ++ G L + KD + G+ +GT++GH GAVW
Sbjct: 3 PILLQGHERSITQIKYNR---EGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVD 59
Query: 506 LNXXXXXXXXXXXXXXXXVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTG-----GQD 670
+ +WD +G +L L V+T F N ++ G
Sbjct: 60 ADWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMGYQ 119
Query: 671 KLLRIYDLNKPEA----EP-KEISGHSSGIKKALWCSEDKQILS-------------ADD 796
+ +DL P EP I + S I A+W + I++ + +
Sbjct: 120 CFVSFFDLRDPSQIDSNEPYMRIPCNDSKITSAVWGPLGECIIAGHEGGELNQYSAKSGE 179
Query: 797 KTVRLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIAFHSAISLDPIKSFEAP 976
V + +H+ L+ +M++ + + + + +L+ K+F
Sbjct: 180 VLVNVKEHSRQINDIQLSRDMTM----------FVTASKDNTAKLFDSTTLEHQKTFRTE 229
Query: 977 ATINSASLHPEKEFLVAGGED--------------FKLYKYDYNSGEELESYKGHFGPIH 1114
+NSA+L P + +V GG F+ + EE KGHFGPI+
Sbjct: 230 RPVNSAALSPNYDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPIN 289
Query: 1115 CVRFSPDGELYASGSEDGTLRL 1180
V F PDG+ Y+SG EDG +R+
Sbjct: 290 SVAFHPDGKSYSSGGEDGYVRI 311
Score = 62.4 bits (150), Expect = 1e-09
Identities = 54/220 (24%), Positives = 101/220 (45%), Gaps = 19/220 (8%)
Frame = +2
Query: 587 LMTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRI-YDLNKPEAEPKEISGHSSGIKKALWC 763
++ H+ + + + ++ + L T +D ++ + Y +N E G G A+WC
Sbjct: 4 ILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNG------ERLGTYMGHTGAVWC 57
Query: 764 SE----DKQILSAD-DKTVRLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIA 928
+ K +L+ D + RLWD T ++ L N +V + + G I++ + + +
Sbjct: 58 VDADWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMG 117
Query: 929 FHSAISL----DP--IKSFEA-------PATINSASLHPEKEFLVAGGEDFKLYKYDYNS 1069
+ +S DP I S E + I SA P E ++AG E +L +Y S
Sbjct: 118 YQCFVSFFDLRDPSQIDSNEPYMRIPCNDSKITSAVWGPLGECIIAGHEGGELNQYSAKS 177
Query: 1070 GEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQT 1189
GE L + K H I+ ++ S D ++ + S+D T +L+ +
Sbjct: 178 GEVLVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDS 217
>ref|XP_608583.2| PREDICTED: similar to CG7568-PA [Bos taurus]
Length = 441
Score = 85.5 bits (210), Expect = 1e-16
Identities = 72/292 (24%), Positives = 126/292 (43%), Gaps = 7/292 (2%)
Frame = +2
Query: 332 TCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLN 511
T GH V +AF+ PYG + + D L +TG TF GH + + N
Sbjct: 155 TLEGHRNVVYAIAFNN--PYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFN 212
Query: 512 XXXXXXXXXXXXXXXXVWDAVSGDELMTLA-HKHIVKTVDFTQDSNYLLTGGQDKLLRIY 688
+WD SG+E+ TL H + ++ F N ++TG D + ++
Sbjct: 213 PQSTLVATGSMDTTAKLWDIQSGEEVFTLTGHSAEIISLSFNTSGNRIITGSFDHTVTVW 272
Query: 689 DLNKPEAEPKEISGHSSGIKKALWCSEDKQILSAD-DKTVRLWDHATMTEVKSLNFN--- 856
+ + + + GH + I A++ + IL+ DKT +LWD V +L +
Sbjct: 273 EADTGR-KVYTLIGHCAEISSAVFNWDCSLILTGSMDKTCKLWDAVNGKCVATLTGHDDE 331
Query: 857 MSVSSMEYIPEGEILVITYGRSIA-FHSAISLDPIKSFEA-PATINSASLHPEKEFLVAG 1030
+ S +Y G+++ A SA + + + E I+ S +P+ L+ G
Sbjct: 332 ILDSCFDYT--GKLIATASADGTARIFSAATRECVTKLEGHEGEISKISFNPQGNRLLTG 389
Query: 1031 GEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQ 1186
D +D +G+ L+ +GH I F+ G++ +GS+D T R+W+
Sbjct: 390 SSDKTARIWDAQTGQCLQVLEGHTDEIFSCAFNYKGDIIITGSKDNTCRIWR 441
Score = 52.8 bits (125), Expect = 9e-07
Identities = 59/245 (24%), Positives = 110/245 (44%), Gaps = 7/245 (2%)
Frame = +2
Query: 560 VWDAVSGDELMTL-AHKHIVKTVDFTQD-SNYLLTGGQDKLLRIYDLNKPEAEPKEISGH 733
+WD SG+EL TL H+++V + F + + TG DK +++ + + GH
Sbjct: 144 LWDTASGEELHTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKCY-HTFRGH 202
Query: 734 SSGIKKALWCSEDKQILSAD-DKTVRLWDHATMTEVKSL-NFNMSVSSMEYIPEG-EILV 904
++ I + + + + D T +LWD + EV +L + + S+ + G I+
Sbjct: 203 TAEIVCLSFNPQSTLVATGSMDTTAKLWDIQSGEEVFTLTGHSAEIISLSFNTSGNRIIT 262
Query: 905 ITYGRSIAFHSAISLDPIKSFEAP-ATINSASLHPEKEFLVAGGEDFKLYKYDYNSGEEL 1081
++ ++ A + + + A I+SA + + ++ G D +D +G+ +
Sbjct: 263 GSFDHTVTVWEADTGRKVYTLIGHCAEISSAVFNWDCSLILTGSMDKTCKLWDAVNGKCV 322
Query: 1082 ESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQTVVGKTYGLWKCVLP-EEDSGELAK 1258
+ GH I F G+L A+ S DGT R++ +CV E GE++
Sbjct: 323 ATLTGHDDEILDSCFDYTGKLIATASADGTARIFSAATR------ECVTKLEGHEGEIS- 375
Query: 1259 PKISF 1273
KISF
Sbjct: 376 -KISF 379
>ref|NP_001033649.1| WD repeat domain 51A [Bos taurus]
Length = 407
Score = 85.5 bits (210), Expect = 1e-16
Identities = 63/245 (25%), Positives = 108/245 (44%), Gaps = 5/245 (2%)
Frame = +2
Query: 470 FLGHKGAVWGATLNXXXXXXXXXXXXXXXXVW-DAVSGDELMTLAHKHIVKTVDFTQDSN 646
F GHK AV + +W V G+ + AH V++V F D
Sbjct: 57 FAGHKDAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQ 116
Query: 647 YLLTGGQDKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQILSA-DDKTVRLWDHA 823
+T DK ++++ ++ + +S H + ++ A + + + I+SA DDKTV+LWD
Sbjct: 117 SFVTASDDKTVKVWSTHRQKFL-FSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKT 175
Query: 824 TMTEVKSL-NFNMSVSSMEYIPEGEILVIT-YGRSIAFHSAISLDPIKSFEA-PATINSA 994
+ V S V+ +++ P G + ++ + ++ ++ A +N+
Sbjct: 176 SRECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNAL 235
Query: 995 SLHPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTL 1174
S HP +LV D L D G L + GH GP V FS GE +ASG D +
Sbjct: 236 SFHPSGNYLVTASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQV 295
Query: 1175 RLWQT 1189
+W++
Sbjct: 296 MVWKS 300
>ref|XP_594126.2| PREDICTED: similar to TBP-associated factor 5 [Bos taurus]
Length = 800
Score = 77.4 bits (189), Expect = 3e-14
Identities = 59/203 (29%), Positives = 91/203 (44%), Gaps = 4/203 (1%)
Frame = +2
Query: 614 VKTVDFTQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQILSA- 790
+++V D + + D L RI D K +E K + GHS + A + + +LS+
Sbjct: 504 LRSVKQAADLSLIDKESDDVLERIMD-EKTASELKILYGHSGPVYGASFSPDRNYLLSSS 562
Query: 791 DDKTVRLWDHATMT-EVKSLNFNMSVSSMEYIPEGEILVIT-YGRSIAFHSAISLDPIKS 964
+D TVRLW T T V N V ++ P G V + R + P++
Sbjct: 563 EDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRI 622
Query: 965 FEAP-ATINSASLHPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGE 1141
F A +N HP ++ G D + +D +G + + GH GPIH + FSP+G
Sbjct: 623 FAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGR 682
Query: 1142 LYASGSEDGTLRLWQTVVGKTYG 1210
A+G+ DG + LW G G
Sbjct: 683 FLATGATDGRVLLWDIGHGLMVG 705
Score = 68.6 bits (166), Expect = 2e-11
Identities = 58/242 (23%), Positives = 93/242 (38%), Gaps = 3/242 (1%)
Frame = +2
Query: 476 GHKGAVWGATLNXXXXXXXXXXXXXXXXVWDAVSGDELMTL-AHKHIVKTVDFTQDSNYL 652
GH G V+GA+ + +W + L+ H + V F+ Y
Sbjct: 541 GHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYF 600
Query: 653 LTGGQDKLLRIYDLNKPEAEPKEI-SGHSSGIKKALWCSEDKQILSAD-DKTVRLWDHAT 826
++GG D++ R++ + +P I +GH + + + + + D+TVRLWD
Sbjct: 601 VSGGHDRVARLWATD--HYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWD--- 655
Query: 827 MTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIAFHSAISLDPIKSFEAPATINSASLHP 1006
+ G + I G I+S + P
Sbjct: 656 ------------------VLNGNCVRIFTGHK------------------GPIHSLTFSP 679
Query: 1007 EKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQ 1186
FL G D ++ +D G + KGH + +RFS DGE+ ASGS D T+RLW
Sbjct: 680 NGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWD 739
Query: 1187 TV 1192
V
Sbjct: 740 AV 741
Score = 59.7 bits (143), Expect = 8e-09
Identities = 53/197 (26%), Positives = 89/197 (45%), Gaps = 6/197 (3%)
Frame = +2
Query: 341 GHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNXXX 520
GH PV D FS PYGY+ +S D L D + F GH V +
Sbjct: 583 GHNYPVWDTQFS---PYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNS 639
Query: 521 XXXXXXXXXXXXXVWDAVSGDEL-MTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRIYDLN 697
+WD ++G+ + + HK + ++ F+ + +L TG D + ++D+
Sbjct: 640 NYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIG 699
Query: 698 KPEAEPKEISGHSSGIKKALWCSEDKQILSAD--DKTVRLWDHA-TMTEVKSLNFNMSVS 868
E+ GH+ + +L S D +IL++ D TVRLWD +V++ +F +
Sbjct: 700 H-GLMVGELKGHTDTV-CSLRFSRDGEILASGSMDNTVRLWDAVKAFEDVETDDFTTATG 757
Query: 869 SMEYIPEG--EILVITY 913
+ +PE E+L+ TY
Sbjct: 758 HIN-LPENSQELLLGTY 773
Score = 51.2 bits (121), Expect = 3e-06
Identities = 56/216 (25%), Positives = 89/216 (41%), Gaps = 6/216 (2%)
Frame = +2
Query: 341 GHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNXXX 520
GH+ PV +FS P +L+S+ +DG L T + + GH VW +
Sbjct: 541 GHSGPVYGASFS---PDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYG 597
Query: 521 XXXXXXXXXXXXXVWDAVSGDELMTLA-HKHIVKTVDFTQDSNYLLTGGQDKLLRIYDLN 697
+W L A H V F +SNY+ TG D+ +R++D+
Sbjct: 598 YYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVL 657
Query: 698 KPEAEPKEISGHSSGIKKALWCSEDKQILS-ADDKTVRLWD--HATMT-EVKSLNFNMSV 865
+ +GH I + + + + A D V LWD H M E+K +V
Sbjct: 658 NGNC-VRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELK--GHTDTV 714
Query: 866 SSMEYIPEGEILVITYGRSIAFHSAISL-DPIKSFE 970
S+ + +GEIL S + + + L D +K+FE
Sbjct: 715 CSLRFSRDGEILA-----SGSMDNTVRLWDAVKAFE 745
>ref|XP_603483.2| PREDICTED: similar to WD repeat domain 51B [Bos taurus]
Length = 495
Score = 76.6 bits (187), Expect = 6e-14
Identities = 56/247 (22%), Positives = 106/247 (42%), Gaps = 7/247 (2%)
Frame = +2
Query: 470 FLGHKGAVWGATLNXXXXXXXXXXXXXXXXVW-DAVSGDELMTLAHKHIVKTVDFTQDSN 646
++GHK + + +W G AH V++VDF+ D
Sbjct: 73 YVGHKDVITSVQFSPLGNLLASASRDRTIRLWIPDKRGKSSEFKAHTAPVRSVDFSADGQ 132
Query: 647 YLLTGGQDKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQILS-ADDKTVRLWDHA 823
+L + +DK ++++++ + + + H+ ++ A + + + I+S ++DKT+++WD
Sbjct: 133 FLASASEDKSIKVWNMYR-QRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTT 191
Query: 824 TMTEVKSLNFNMSVSSMEYI---PEGEILVITYGRSIAFHSAISLDPIKSFEAPAT--IN 988
V NF+ V ++ P G + I ++ + + +N
Sbjct: 192 NKQCVN--NFSDFVGFANFVAFNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQVHSGGVN 249
Query: 989 SASLHPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDG 1168
S HP +L+ D L D G + + +GH GP+ V FS GEL+ SG D
Sbjct: 250 CVSFHPSGNYLITASSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGELFTSGGADA 309
Query: 1169 TLRLWQT 1189
+ LW+T
Sbjct: 310 QVLLWRT 316
Score = 72.8 bits (177), Expect = 9e-13
Identities = 50/249 (20%), Positives = 111/249 (44%), Gaps = 5/249 (2%)
Frame = +2
Query: 470 FLGHKGAVWGATLNXXXXXXXXXXXXXXXXVWDA-VSGDELMTLAHKHIVKTVDFTQDSN 646
F GHK A+ + +W + HK ++ +V F+ N
Sbjct: 31 FKGHKAAITSVDFSPNGKQLATGSWDTFLMLWSLRPQARAFRYVGHKDVITSVQFSPLGN 90
Query: 647 YLLTGGQDKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQILSA-DDKTVRLWDHA 823
L + +D+ +R++ +K + E H++ ++ + ++ + + SA +DK++++W+
Sbjct: 91 LLASASRDRTIRLWIPDK-RGKSSEFKAHTAPVRSVDFSADGQFLASASEDKSIKVWNMY 149
Query: 824 TMTEVKSLNFNMS-VSSMEYIPEGEILV-ITYGRSIAFHSAISLDPIKSF-EAPATINSA 994
+ SL + V ++ P+G ++V + ++I + + +F + N
Sbjct: 150 RQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDFVGFANFV 209
Query: 995 SLHPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTL 1174
+ +P + + G D + +D + L+ Y+ H G ++CV F P G + S DGTL
Sbjct: 210 AFNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQVHSGGVNCVSFHPSGNYLITASSDGTL 269
Query: 1175 RLWQTVVGK 1201
++ + G+
Sbjct: 270 KILDLLEGR 278
>ref|NP_001033662.1| smu-1 suppressor of mec-8 and unc-52 homolog [Bos taurus]
Length = 513
Score = 70.1 bits (170), Expect = 6e-12
Identities = 63/224 (28%), Positives = 105/224 (46%), Gaps = 15/224 (6%)
Frame = +2
Query: 560 VWDAVSGDELMTL--AHKHIVKTVDFTQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGH 733
VW SG L AH V + F++DS+ +L+ D+ +RI+ L K KE GH
Sbjct: 290 VWKIQSGQCLRRFERAHSKGVTCLSFSKDSSQILSASFDQTIRIHGL-KSGKTLKEFRGH 348
Query: 734 SSGIKKALWCSEDKQILSAD-DKTVRLWDHATM---TEVKSLNF----NMSVSSMEYIPE 889
SS + +A + + I+SA D TV++W+ T KSL +++V+S+ +P+
Sbjct: 349 SSFVNEATFTQDGHYIISASSDGTVKIWNMKTTECSNTFKSLGSTAGTDITVNSVILLPK 408
Query: 890 G-EILVITYGRSIAFHSAISLDPIKSFEAPATINS----ASLHPEKEFLVAGGEDFKLYK 1054
E V+ + + ++SF + +L P E++ GEDF LY
Sbjct: 409 NPEHFVVCNRSNTVVIMNMQGQIVRSFSSGKREGGDFVCCALSPRGEWIYCVGEDFVLYC 468
Query: 1055 YDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQ 1186
+ +G+ + H + + P L A+ SEDG L+LW+
Sbjct: 469 FSTVTGKLERTLTVHEKDVIGIAHHPHQNLIATYSEDGLLKLWK 512
>ref|XP_613467.2| PREDICTED: similar to Coatomer alpha subunit (Alpha-coat protein)
(Alpha-COP) (HEPCOP) (HEP-COP) isoform 1 [Bos taurus]
Length = 1224
Score = 68.2 bits (165), Expect = 2e-11
Identities = 57/245 (23%), Positives = 111/245 (45%), Gaps = 4/245 (1%)
Frame = +2
Query: 461 IGTFLGHKGAVWGATLNXXXXXXXXXXXXXXXXVWDAVSGDELMTL-AHKHIVKTVDFTQ 637
I F H G V G + VW+ L TL H ++T F
Sbjct: 44 IDKFDEHDGPVRGIDFHKQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHH 103
Query: 638 DSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQILSAD-DKTVRLW 814
+ ++L+ D+ +R+++ ++GH+ + A + + ++SA D+TVR+W
Sbjct: 104 EYPWILSASDDQTIRVWNWQSRTCVCV-LTGHNHYVMCAQFHPSEDLVVSASLDQTVRVW 162
Query: 815 DHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIAFHSAISLDPIKSFEAPATINSA 994
D + + + N+S ++E G V +G + A+ ++ + +N A
Sbjct: 163 DISGLRKK-----NLSPGAVESDVRGITGVDLFGTT----DAVVKHVLEGHDRG--VNWA 211
Query: 995 SLHPEKEFLVAGGED--FKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDG 1168
+ HP +V+G +D K+++ + + E+++ +GH+ + C F P EL S SED
Sbjct: 212 AFHPTMPLIVSGADDRQVKIWRMNESKAWEVDTCRGHYNNVSCAVFHPRQELILSNSEDK 271
Query: 1169 TLRLW 1183
++R+W
Sbjct: 272 SIRVW 276
>ref|XP_882656.1| PREDICTED: similar to Coatomer alpha subunit (Alpha-coat protein)
(Alpha-COP) (HEPCOP) (HEP-COP) isoform 17 [Bos taurus]
Length = 1225
Score = 68.2 bits (165), Expect = 2e-11
Identities = 57/245 (23%), Positives = 111/245 (45%), Gaps = 4/245 (1%)
Frame = +2
Query: 461 IGTFLGHKGAVWGATLNXXXXXXXXXXXXXXXXVWDAVSGDELMTL-AHKHIVKTVDFTQ 637
I F H G V G + VW+ L TL H ++T F
Sbjct: 44 IDKFDEHDGPVRGIDFHKQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHH 103
Query: 638 DSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQILSAD-DKTVRLW 814
+ ++L+ D+ +R+++ ++GH+ + A + + ++SA D+TVR+W
Sbjct: 104 EYPWILSASDDQTIRVWNWQSRTCVCV-LTGHNHYVMCAQFHPSEDLVVSASLDQTVRVW 162
Query: 815 DHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIAFHSAISLDPIKSFEAPATINSA 994
D + + + N+S ++E G V +G + A+ ++ + +N A
Sbjct: 163 DISGLRKK-----NLSPGAVESDVRGITGVDLFGTT----DAVVKHVLEGHDRG--VNWA 211
Query: 995 SLHPEKEFLVAGGED--FKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDG 1168
+ HP +V+G +D K+++ + + E+++ +GH+ + C F P EL S SED
Sbjct: 212 AFHPTMPLIVSGADDRQVKIWRMNESKAWEVDTCRGHYNNVSCAVFHPRQELILSNSEDK 271
Query: 1169 TLRLW 1183
++R+W
Sbjct: 272 SIRVW 276
>ref|XP_882505.1| PREDICTED: similar to Coatomer alpha subunit (Alpha-coat protein)
(Alpha-COP) (HEPCOP) (HEP-COP) isoform 14 [Bos taurus]
Length = 1175
Score = 68.2 bits (165), Expect = 2e-11
Identities = 57/245 (23%), Positives = 111/245 (45%), Gaps = 4/245 (1%)
Frame = +2
Query: 461 IGTFLGHKGAVWGATLNXXXXXXXXXXXXXXXXVWDAVSGDELMTL-AHKHIVKTVDFTQ 637
I F H G V G + VW+ L TL H ++T F
Sbjct: 44 IDKFDEHDGPVRGIDFHKQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHH 103
Query: 638 DSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQILSAD-DKTVRLW 814
+ ++L+ D+ +R+++ ++GH+ + A + + ++SA D+TVR+W
Sbjct: 104 EYPWILSASDDQTIRVWNWQSRTCVCV-LTGHNHYVMCAQFHPSEDLVVSASLDQTVRVW 162
Query: 815 DHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIAFHSAISLDPIKSFEAPATINSA 994
D + + + N+S ++E G V +G + A+ ++ + +N A
Sbjct: 163 DISGLRKK-----NLSPGAVESDVRGITGVDLFGTT----DAVVKHVLEGHDRG--VNWA 211
Query: 995 SLHPEKEFLVAGGED--FKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDG 1168
+ HP +V+G +D K+++ + + E+++ +GH+ + C F P EL S SED
Sbjct: 212 AFHPTMPLIVSGADDRQVKIWRMNESKAWEVDTCRGHYNNVSCAVFHPRQELILSNSEDK 271
Query: 1169 TLRLW 1183
++R+W
Sbjct: 272 SIRVW 276
Database: RefSeqBP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 16,112,626
Number of sequences in database: 33,508
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,869,289
Number of Sequences: 33508
Number of extensions: 1183874
Number of successful extensions: 4944
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 3301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4495
length of database: 16,112,626
effective HSP length: 107
effective length of database: 12,527,270
effective search space used: 6326271350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0035_D10
(1838 letters)
Database: RefSeqCP
33,732 sequences; 19,266,565 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_543790.1| PREDICTED: similar to serine/threonine kinase r... 655 0.0
Alignment gi|XP_866613.1| PREDICTED: similar to serine/threonine kinase r... 646 0.0
Alignment gi|XP_535328.1| PREDICTED: similar to Eukaryotic translation in... 88 3e-17
Alignment gi|XP_541857.2| PREDICTED: similar to WD repeat domain 51A isof... 87 5e-17
Alignment gi|XP_859995.1| PREDICTED: similar to WD repeat domain 51A isof... 87 5e-17
Alignment gi|XP_539737.2| PREDICTED: similar to Apoptotic protease activa... 84 6e-16
Alignment gi|XP_866503.1| PREDICTED: similar to apoptotic protease activa... 84 6e-16
Alignment gi|XP_534593.2| PREDICTED: similar to CG7568-PA [Canis familiaris] 83 8e-16
Alignment gi|XP_532646.2| PREDICTED: similar to WD repeat domain 51B [Can... 82 2e-15
Alignment gi|XP_866531.1| PREDICTED: similar to apoptotic protease activa... 82 2e-15
>ref|XP_543790.1| PREDICTED: similar to serine/threonine kinase receptor associated
protein (predicted) isoform 1 [Canis familiaris]
Length = 350
Score = 655 bits (1690), Expect = 0.0
Identities = 319/350 (91%), Positives = 321/350 (91%)
Frame = +2
Query: 308 MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKG 487
MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKG
Sbjct: 1 MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKG 60
Query: 488 AVWGATLNXXXXXXXXXXXXXXXXVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQ 667
AVWGATLN VWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQ
Sbjct: 61 AVWGATLNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQ 120
Query: 668 DKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQILSADDKTVRLWDHATMTEVKSL 847
DKLLRIYDLNKPEAEPKEISGH+SGIKKALWCSEDKQILSADDKTVRLWDHATMTEVKSL
Sbjct: 121 DKLLRIYDLNKPEAEPKEISGHTSGIKKALWCSEDKQILSADDKTVRLWDHATMTEVKSL 180
Query: 848 NFNMSVSSMEYIPEGEILVITYGRSIAFHSAISLDPIKSFEAPATINSASLHPEKEFLVA 1027
NFNMSVSSMEYIPEGEILVITYGRSIAFHSA+SLDPIKSFEAPATINSASLHPEKEFLVA
Sbjct: 181 NFNMSVSSMEYIPEGEILVITYGRSIAFHSAVSLDPIKSFEAPATINSASLHPEKEFLVA 240
Query: 1028 GGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQTVVGKTY 1207
GGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQTVVGKTY
Sbjct: 241 GGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQTVVGKTY 300
Query: 1208 GLWKCVLPEEDSGELAKPKISFPXXXXXXXXXXXXXNSDSIYSSTPEVKA 1357
GLWKCVLPEEDSGELAKPKISFP NSDSIYSSTPEVKA
Sbjct: 301 GLWKCVLPEEDSGELAKPKISFPETTEEELEEITSENSDSIYSSTPEVKA 350
>ref|XP_866613.1| PREDICTED: similar to serine/threonine kinase receptor associated
protein (predicted) isoform 2 [Canis familiaris]
Length = 362
Score = 646 bits (1667), Expect = 0.0
Identities = 319/362 (88%), Positives = 321/362 (88%), Gaps = 12/362 (3%)
Frame = +2
Query: 308 MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACK------------DGKPMLRQGDT 451
MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACK DGKPMLRQGDT
Sbjct: 1 MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKGERVTCLFKCVLDGKPMLRQGDT 60
Query: 452 GDWIGTFLGHKGAVWGATLNXXXXXXXXXXXXXXXXVWDAVSGDELMTLAHKHIVKTVDF 631
GDWIGTFLGHKGAVWGATLN VWDAVSGDELMTLAHKHIVKTVDF
Sbjct: 61 GDWIGTFLGHKGAVWGATLNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDF 120
Query: 632 TQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQILSADDKTVRL 811
TQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGH+SGIKKALWCSEDKQILSADDKTVRL
Sbjct: 121 TQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHTSGIKKALWCSEDKQILSADDKTVRL 180
Query: 812 WDHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIAFHSAISLDPIKSFEAPATINS 991
WDHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIAFHSA+SLDPIKSFEAPATINS
Sbjct: 181 WDHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIAFHSAVSLDPIKSFEAPATINS 240
Query: 992 ASLHPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGT 1171
ASLHPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGT
Sbjct: 241 ASLHPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGT 300
Query: 1172 LRLWQTVVGKTYGLWKCVLPEEDSGELAKPKISFPXXXXXXXXXXXXXNSDSIYSSTPEV 1351
LRLWQTVVGKTYGLWKCVLPEEDSGELAKPKISFP NSDSIYSSTPEV
Sbjct: 301 LRLWQTVVGKTYGLWKCVLPEEDSGELAKPKISFPETTEEELEEITSENSDSIYSSTPEV 360
Query: 1352 KA 1357
KA
Sbjct: 361 KA 362
>ref|XP_535328.1| PREDICTED: similar to Eukaryotic translation initiation factor 3
subunit 2 (eIF-3 beta) (eIF3 p36) (eIF3i) (TGF-beta
receptor interacting protein 1) (TRIP-1) [Canis
familiaris]
Length = 325
Score = 87.8 bits (216), Expect = 3e-17
Identities = 75/322 (23%), Positives = 128/322 (39%), Gaps = 37/322 (11%)
Frame = +2
Query: 326 PLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGAT 505
P+ GH R + + ++ G L + KD + G+ +GT++GH GAVW
Sbjct: 3 PILLQGHERSITQIKYNR---EGDLLFTVAKDPIVNVWYSVNGERLGTYMGHSGAVWCVD 59
Query: 506 LNXXXXXXXXXXXXXXXXVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTG-----GQD 670
+ +WD +G +L L V+T F N ++ G
Sbjct: 60 ADWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMGYQ 119
Query: 671 KLLRIYDLNKPEA----EP-KEISGHSSGIKKALWCSEDKQILS-------------ADD 796
+ +DL P EP +I + S I A+W + I++ + +
Sbjct: 120 CFVSFFDLRDPSQIDNNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGELNQYSAKSGE 179
Query: 797 KTVRLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIAFHSAISLDPIKSFEAP 976
V + +H+ L+ +M++ + + + + +L+ K+F
Sbjct: 180 VLVNVKEHSRQINDIQLSRDMTM----------FVTASKDNTAKLFDSTTLEHQKTFRTE 229
Query: 977 ATINSASLHPEKEFLVAGGED--------------FKLYKYDYNSGEELESYKGHFGPIH 1114
+NSA+L P + +V GG F+ + EE KGHFGPI+
Sbjct: 230 RPVNSAALSPNYDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPIN 289
Query: 1115 CVRFSPDGELYASGSEDGTLRL 1180
V F PDG+ Y+SG EDG +R+
Sbjct: 290 SVAFHPDGKSYSSGGEDGYVRI 311
Score = 62.0 bits (149), Expect = 2e-09
Identities = 50/220 (22%), Positives = 99/220 (45%), Gaps = 19/220 (8%)
Frame = +2
Query: 587 LMTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRI-YDLNKPEAEPKEISGHSSGIKKALWC 763
++ H+ + + + ++ + L T +D ++ + Y +N E G G A+WC
Sbjct: 4 ILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNG------ERLGTYMGHSGAVWC 57
Query: 764 SE----DKQILSAD-DKTVRLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIA 928
+ K +L+ D + RLWD T ++ L N +V + + G I++ + + +
Sbjct: 58 VDADWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMG 117
Query: 929 FHSAISLDPIKS----------FEAPAT---INSASLHPEKEFLVAGGEDFKLYKYDYNS 1069
+ +S ++ + P I SA P E ++AG E +L +Y S
Sbjct: 118 YQCFVSFFDLRDPSQIDNNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGGELNQYSAKS 177
Query: 1070 GEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQT 1189
GE L + K H I+ ++ S D ++ + S+D T +L+ +
Sbjct: 178 GEVLVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDS 217
>ref|XP_541857.2| PREDICTED: similar to WD repeat domain 51A isoform 1 [Canis
familiaris]
Length = 406
Score = 87.0 bits (214), Expect = 5e-17
Identities = 64/245 (26%), Positives = 110/245 (44%), Gaps = 5/245 (2%)
Frame = +2
Query: 470 FLGHKGAVWGATLNXXXXXXXXXXXXXXXXVW-DAVSGDELMTLAHKHIVKTVDFTQDSN 646
F GHK AV + +W V G+ + AH V++V F D
Sbjct: 57 FAGHKDAVTCVNFSPSGHLLASGSRDKTVRIWIPNVKGESTVFRAHTATVRSVHFCSDGQ 116
Query: 647 YLLTGGQDKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQILSA-DDKTVRLWDHA 823
L+T DK ++++ ++ + +S H + ++ A + + + I+SA DDKTV+LWD
Sbjct: 117 SLVTASDDKTVKVWSTHRQKFL-FSLSQHINWVRCARFSPDGRLIVSASDDKTVKLWDKT 175
Query: 824 TMTEVKSL-NFNMSVSSMEYIPEGE-ILVITYGRSIAFHSAISLDPIKSFEA-PATINSA 994
+ V S V+ +++ P G I + ++ + ++ ++ A +N+
Sbjct: 176 SRECVHSYCEHGGFVTYVDFHPSGTCIAAASMDNTVKVWDVRTHRLLQHYQLHSAAVNAL 235
Query: 995 SLHPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTL 1174
S HP +L+ D L D G L + GH GP V FS GE +ASG D +
Sbjct: 236 SFHPSGNYLLTASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQV 295
Query: 1175 RLWQT 1189
+W++
Sbjct: 296 MVWKS 300
>ref|XP_859995.1| PREDICTED: similar to WD repeat domain 51A isoform 2 [Canis
familiaris]
Length = 388
Score = 87.0 bits (214), Expect = 5e-17
Identities = 65/243 (26%), Positives = 106/243 (43%), Gaps = 3/243 (1%)
Frame = +2
Query: 470 FLGHKGAVWGATLNXXXXXXXXXXXXXXXXVW-DAVSGDELMTLAHKHIVKTVDFTQDSN 646
F GHK AV + +W V G+ + AH V++V F D
Sbjct: 57 FAGHKDAVTCVNFSPSGHLLASGSRDKTVRIWIPNVKGESTVFRAHTATVRSVHFCSDGQ 116
Query: 647 YLLTGGQDKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQILSA-DDKTVRLWDHA 823
L+T DK ++++ ++ + +S H + ++ A + + + I+SA DDKTV+LWD
Sbjct: 117 SLVTASDDKTVKVWSTHRQKFL-FSLSQHINWVRCARFSPDGRLIVSASDDKTVKLWDKT 175
Query: 824 TMTEVKSL-NFNMSVSSMEYIPEGEILVITYGRSIAFHSAISLDPIKSFEAPATINSASL 1000
+ V S V+ +++ P G + + + HSA +N+ S
Sbjct: 176 SRECVHSYCEHGGFVTYVDFHPSGTCISSS---GVNVHSA-------------AVNALSF 219
Query: 1001 HPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRL 1180
HP +L+ D L D G L + GH GP V FS GE +ASG D + +
Sbjct: 220 HPSGNYLLTASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVMV 279
Query: 1181 WQT 1189
W++
Sbjct: 280 WKS 282
>ref|XP_539737.2| PREDICTED: similar to Apoptotic protease activating factor 1 (Apaf-1)
isoform 1 [Canis familiaris]
Length = 1250
Score = 83.6 bits (205), Expect = 6e-16
Identities = 75/302 (24%), Positives = 128/302 (42%), Gaps = 20/302 (6%)
Frame = +2
Query: 344 HTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNXXXX 523
HT V FS G + S D + + +TG+ + H+ V +
Sbjct: 615 HTDAVYHACFS---EDGQRIASCGVDKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDR 671
Query: 524 XXXXXXXXXXXXVWDAVSGDELMTL-AHKHIVKTVDFTQDSNYLL--TGGQDKLLRIYDL 694
+W++++G + H V FT +S+YLL T D L+++DL
Sbjct: 672 FIATCSVDKKVKIWNSMTGGLVHVYDEHSEQVNCCHFTNNSHYLLLATASSDCFLKLWDL 731
Query: 695 NKPEAEPKEISGHSSGIKKALWCSEDKQILSAD-DKTVRLWDHATMTEVKSLNFNMS-VS 868
N+ E + GH++ + + +DK + S D T++LWD + E KS+N ++
Sbjct: 732 NQKECR-NTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDVKSANERKSINVKQFFLN 790
Query: 869 SMEYIPEGEILVITYGRS-------IAFHSAISLDPIKSFEAPA--------TINSASLH 1003
S E + E++V S +A + I L I + A TI
Sbjct: 791 SEEPQEDMEVIVKCCSWSADGTRIMVAAKNKIFLFDIHTGGLLAEIHTGHHSTIQYCDFS 850
Query: 1004 PEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLW 1183
P+ V + ++ +S ++ +GH +HCV FSPDG + + S+D T+RLW
Sbjct: 851 PQNHLAVVALSQCCVELWNMDSCLKVADCRGHLSWVHCVMFSPDGSSFLTSSDDQTIRLW 910
Query: 1184 QT 1189
+T
Sbjct: 911 ET 912
Score = 58.9 bits (141), Expect = 2e-08
Identities = 44/199 (22%), Positives = 86/199 (43%), Gaps = 2/199 (1%)
Frame = +2
Query: 647 YLLTGGQDKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQILSA-DDKTVRLWDHA 823
Y+ GG+D + I +L I GH ++ + + K ++S+ DD ++++W+
Sbjct: 976 YIAFGGEDGAVEILELLNNRIFQSRI-GHKKTVRHIQFTDDGKTLISSSDDSSIQVWNWQ 1034
Query: 824 TMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIAFHSAISLDPIKSFEAPA-TINSASL 1000
+ V +V + + ++L ++ ++ S I+ K F T+ S +
Sbjct: 1035 SEEYVFLQAHQETVKDFKLLKNSKLLSWSFDGTVKIWSIITGRIEKDFVCHQDTVLSCDI 1094
Query: 1001 HPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRL 1180
P+ + D + + L +GH G + C FS D L A+G ++G +R+
Sbjct: 1095 SPDATKFSSTSADKTAKIWSFELLSPLHELRGHKGCVRCSVFSVDSTLLATGDDNGEIRI 1154
Query: 1181 WQTVVGKTYGLWKCVLPEE 1237
W G+ L +L EE
Sbjct: 1155 WNVSNGELLHLCAPILVEE 1173
Score = 51.6 bits (122), Expect = 3e-06
Identities = 34/195 (17%), Positives = 85/195 (43%), Gaps = 1/195 (0%)
Frame = +2
Query: 602 HKHIVKTVDFTQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQI 781
H ++ DF+ ++ + + +++++ + + GH S + ++ +
Sbjct: 840 HHSTIQYCDFSPQNHLAVVALSQCCVELWNMDSC-LKVADCRGHLSWVHCVMFSPDGSSF 898
Query: 782 L-SADDKTVRLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIAFHSAISLDPI 958
L S+DD+T+RLW+ + + ++ + + E E++V+
Sbjct: 899 LTSSDDQTIRLWETKKVCKNSAIVLKQEIDVV--FQENEVMVLAVDNIKRLQLINGKTGQ 956
Query: 959 KSFEAPATINSASLHPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDG 1138
+ A ++ L P +++ GGED + + + +S GH + ++F+ DG
Sbjct: 957 IDYLIEAQVSCCCLSPHLQYIAFGGEDGAVEILELLNNRIFQSRIGHKKTVRHIQFTDDG 1016
Query: 1139 ELYASGSEDGTLRLW 1183
+ S S+D ++++W
Sbjct: 1017 KTLISSSDDSSIQVW 1031
>ref|XP_866503.1| PREDICTED: similar to apoptotic protease activating factor isoform a
isoform 5 [Canis familiaris]
Length = 1238
Score = 83.6 bits (205), Expect = 6e-16
Identities = 75/302 (24%), Positives = 128/302 (42%), Gaps = 20/302 (6%)
Frame = +2
Query: 344 HTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNXXXX 523
HT V FS G + S D + + +TG+ + H+ V +
Sbjct: 603 HTDAVYHACFS---EDGQRIASCGVDKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDR 659
Query: 524 XXXXXXXXXXXXVWDAVSGDELMTL-AHKHIVKTVDFTQDSNYLL--TGGQDKLLRIYDL 694
+W++++G + H V FT +S+YLL T D L+++DL
Sbjct: 660 FIATCSVDKKVKIWNSMTGGLVHVYDEHSEQVNCCHFTNNSHYLLLATASSDCFLKLWDL 719
Query: 695 NKPEAEPKEISGHSSGIKKALWCSEDKQILSAD-DKTVRLWDHATMTEVKSLNFNMS-VS 868
N+ E + GH++ + + +DK + S D T++LWD + E KS+N ++
Sbjct: 720 NQKECR-NTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDVKSANERKSINVKQFFLN 778
Query: 869 SMEYIPEGEILVITYGRS-------IAFHSAISLDPIKSFEAPA--------TINSASLH 1003
S E + E++V S +A + I L I + A TI
Sbjct: 779 SEEPQEDMEVIVKCCSWSADGTRIMVAAKNKIFLFDIHTGGLLAEIHTGHHSTIQYCDFS 838
Query: 1004 PEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLW 1183
P+ V + ++ +S ++ +GH +HCV FSPDG + + S+D T+RLW
Sbjct: 839 PQNHLAVVALSQCCVELWNMDSCLKVADCRGHLSWVHCVMFSPDGSSFLTSSDDQTIRLW 898
Query: 1184 QT 1189
+T
Sbjct: 899 ET 900
Score = 58.9 bits (141), Expect = 2e-08
Identities = 44/199 (22%), Positives = 86/199 (43%), Gaps = 2/199 (1%)
Frame = +2
Query: 647 YLLTGGQDKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQILSA-DDKTVRLWDHA 823
Y+ GG+D + I +L I GH ++ + + K ++S+ DD ++++W+
Sbjct: 964 YIAFGGEDGAVEILELLNNRIFQSRI-GHKKTVRHIQFTDDGKTLISSSDDSSIQVWNWQ 1022
Query: 824 TMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIAFHSAISLDPIKSFEAPA-TINSASL 1000
+ V +V + + ++L ++ ++ S I+ K F T+ S +
Sbjct: 1023 SEEYVFLQAHQETVKDFKLLKNSKLLSWSFDGTVKIWSIITGRIEKDFVCHQDTVLSCDI 1082
Query: 1001 HPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRL 1180
P+ + D + + L +GH G + C FS D L A+G ++G +R+
Sbjct: 1083 SPDATKFSSTSADKTAKIWSFELLSPLHELRGHKGCVRCSVFSVDSTLLATGDDNGEIRI 1142
Query: 1181 WQTVVGKTYGLWKCVLPEE 1237
W G+ L +L EE
Sbjct: 1143 WNVSNGELLHLCAPILVEE 1161
Score = 51.6 bits (122), Expect = 3e-06
Identities = 34/195 (17%), Positives = 85/195 (43%), Gaps = 1/195 (0%)
Frame = +2
Query: 602 HKHIVKTVDFTQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQI 781
H ++ DF+ ++ + + +++++ + + GH S + ++ +
Sbjct: 828 HHSTIQYCDFSPQNHLAVVALSQCCVELWNMDSC-LKVADCRGHLSWVHCVMFSPDGSSF 886
Query: 782 L-SADDKTVRLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIAFHSAISLDPI 958
L S+DD+T+RLW+ + + ++ + + E E++V+
Sbjct: 887 LTSSDDQTIRLWETKKVCKNSAIVLKQEIDVV--FQENEVMVLAVDNIKRLQLINGKTGQ 944
Query: 959 KSFEAPATINSASLHPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDG 1138
+ A ++ L P +++ GGED + + + +S GH + ++F+ DG
Sbjct: 945 IDYLIEAQVSCCCLSPHLQYIAFGGEDGAVEILELLNNRIFQSRIGHKKTVRHIQFTDDG 1004
Query: 1139 ELYASGSEDGTLRLW 1183
+ S S+D ++++W
Sbjct: 1005 KTLISSSDDSSIQVW 1019
>ref|XP_534593.2| PREDICTED: similar to CG7568-PA [Canis familiaris]
Length = 415
Score = 83.2 bits (204), Expect = 8e-16
Identities = 71/290 (24%), Positives = 122/290 (42%), Gaps = 5/290 (1%)
Frame = +2
Query: 332 TCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLN 511
T GH V +AF+ PYG + + D L +TG TF GH + + N
Sbjct: 129 TLEGHRNVVYAIAFNN--PYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFN 186
Query: 512 XXXXXXXXXXXXXXXXVWDAVSGDELMTL-AHKHIVKTVDFTQDSNYLLTGGQDKLLRIY 688
+WD SG+E+ TL H + ++ F + ++TG D + ++
Sbjct: 187 PQSTLVATGSMDTTAKLWDIQSGEEVFTLRGHSAEIISLSFNTSGDRIVTGSFDHTVAVW 246
Query: 689 DLNKPEAEPKEISGHSSGIKKALWCSEDKQILSAD-DKTVRLWDHATMTEVKSLNFN--- 856
+ + + + GH + I AL+ + IL+ DKT LWD + V +L +
Sbjct: 247 EADTGR-KVYTLIGHCAEISSALFNWDCSLILTGSMDKTCMLWDASNGKCVATLTGHDDE 305
Query: 857 MSVSSMEYIPEGEILVITYGRSIAFHSAISLDPIKSFEAPATINSASLHPEKEFLVAGGE 1036
+ S +Y + G + F +A K I+ S +P+ L+ G
Sbjct: 306 ILDSCFDYTGKLIATASADGTARVFSAATRKCLTKLEGHEGEISKISFNPQGNRLLTGSA 365
Query: 1037 DFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQ 1186
D +D +G+ L+ +GH I F+ G++ +GS+D T R+W+
Sbjct: 366 DETARIWDAQTGQCLQVLEGHTDEIFSCAFNYKGDIIITGSKDNTCRIWR 415
Score = 57.0 bits (136), Expect = 6e-08
Identities = 60/245 (24%), Positives = 113/245 (46%), Gaps = 7/245 (2%)
Frame = +2
Query: 560 VWDAVSGDELMTL-AHKHIVKTVDFTQD-SNYLLTGGQDKLLRIYDLNKPEAEPKEISGH 733
+WD SG+EL TL H+++V + F + + TG DK +++ + + GH
Sbjct: 118 LWDTASGEELHTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKCY-HTFRGH 176
Query: 734 SSGIKKALWCSEDKQILSAD-DKTVRLWDHATMTEVKSLN-FNMSVSSMEYIPEGEILVI 907
++ I + + + + D T +LWD + EV +L + + S+ + G+ +V
Sbjct: 177 TAEIVCLSFNPQSTLVATGSMDTTAKLWDIQSGEEVFTLRGHSAEIISLSFNTSGDRIVT 236
Query: 908 -TYGRSIAFHSAISLDPIKSFEAP-ATINSASLHPEKEFLVAGGEDFKLYKYDYNSGEEL 1081
++ ++A A + + + A I+SA + + ++ G D +D ++G+ +
Sbjct: 237 GSFDHTVAVWEADTGRKVYTLIGHCAEISSALFNWDCSLILTGSMDKTCMLWDASNGKCV 296
Query: 1082 ESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQTVVGKTYGLWKCVLP-EEDSGELAK 1258
+ GH I F G+L A+ S DGT R++ KC+ E GE++
Sbjct: 297 ATLTGHDDEILDSCFDYTGKLIATASADGTARVFSAATR------KCLTKLEGHEGEIS- 349
Query: 1259 PKISF 1273
KISF
Sbjct: 350 -KISF 353
>ref|XP_532646.2| PREDICTED: similar to WD repeat domain 51B [Canis familiaris]
Length = 833
Score = 82.0 bits (201), Expect = 2e-15
Identities = 69/290 (23%), Positives = 122/290 (42%), Gaps = 7/290 (2%)
Frame = +2
Query: 341 GHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNXXX 520
GH + + FS P G L +A D ML ++GHK V +
Sbjct: 371 GHKAAITSVDFS---PSGKQLATASWDTFLMLWNCKPQARAFRYVGHKDVVTSVQFSPLG 427
Query: 521 XXXXXXXXXXXXXVW-DAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRIYDLN 697
+W G AH V++VDF+ D +L T +DK ++++++
Sbjct: 428 NLLASASRDRTVRLWIPDKRGKSSEFKAHTAPVRSVDFSADGQFLATASEDKSIKVWNMY 487
Query: 698 KPEAEPKEISGHSSGIKKALWCSEDKQILS-ADDKTVRLWDHATMTEVKSLNFNMSVSSM 874
+ + + H+ ++ A + + + I+S ++DKT+++WD V NF+ SV
Sbjct: 488 R-QRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVN--NFSDSVGFA 544
Query: 875 EYI---PEGEILVITYGRSIAFHSAISLDPIKSFEAPAT--INSASLHPEKEFLVAGGED 1039
++ P G + I ++ + + +N S HP +++ D
Sbjct: 545 NFVDFNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQVHSGGVNCVSFHPSGNYIITASSD 604
Query: 1040 FKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQT 1189
L D G + + +GH GP+ V FS GEL++SG D + LW+T
Sbjct: 605 GTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGELFSSGGADTQVLLWRT 654
Score = 73.9 bits (180), Expect = 5e-13
Identities = 50/249 (20%), Positives = 112/249 (44%), Gaps = 5/249 (2%)
Frame = +2
Query: 470 FLGHKGAVWGATLNXXXXXXXXXXXXXXXXVWDAV-SGDELMTLAHKHIVKTVDFTQDSN 646
F GHK A+ + +W+ + HK +V +V F+ N
Sbjct: 369 FKGHKAAITSVDFSPSGKQLATASWDTFLMLWNCKPQARAFRYVGHKDVVTSVQFSPLGN 428
Query: 647 YLLTGGQDKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQILSA-DDKTVRLWDHA 823
L + +D+ +R++ +K + E H++ ++ + ++ + + +A +DK++++W+
Sbjct: 429 LLASASRDRTVRLWIPDK-RGKSSEFKAHTAPVRSVDFSADGQFLATASEDKSIKVWNMY 487
Query: 824 TMTEVKSLNFNMS-VSSMEYIPEGEILV-ITYGRSIAFHSAISLDPIKSF-EAPATINSA 994
+ SL + V ++ P+G ++V + ++I + + +F ++ N
Sbjct: 488 RQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDSVGFANFV 547
Query: 995 SLHPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTL 1174
+P + + G D + +D + L+ Y+ H G ++CV F P G + S DGTL
Sbjct: 548 DFNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQVHSGGVNCVSFHPSGNYIITASSDGTL 607
Query: 1175 RLWQTVVGK 1201
++ + G+
Sbjct: 608 KILDLLEGR 616
>ref|XP_866531.1| PREDICTED: similar to apoptotic protease activating factor isoform d
isoform 6 [Canis familiaris]
Length = 1207
Score = 82.0 bits (201), Expect = 2e-15
Identities = 71/286 (24%), Positives = 122/286 (42%), Gaps = 4/286 (1%)
Frame = +2
Query: 344 HTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNXXXX 523
HT V FS G + S D + + +TG+ + H+ V +
Sbjct: 615 HTDAVYHACFS---EDGQRIASCGVDKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDR 671
Query: 524 XXXXXXXXXXXXVWDAVSGDELMTL-AHKHIVKTVDFTQDSNYLL--TGGQDKLLRIYDL 694
+W++++G + H V FT +S+YLL T D L+++DL
Sbjct: 672 FIATCSVDKKVKIWNSMTGGLVHVYDEHSEQVNCCHFTNNSHYLLLATASSDCFLKLWDL 731
Query: 695 NKPEAEPKEISGHSSGIKKALWCSEDKQILSAD-DKTVRLWDHATMTEVKSLNFNMSVSS 871
N+ E + GH++ + + +DK + S D T++LWD + E KS+N +
Sbjct: 732 NQKECR-NTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDVKSANERKSINVKQFFLN 790
Query: 872 MEYIPEGEILVITYGRSIAFHSAISLDPIKSFEAPATINSASLHPEKEFLVAGGEDFKLY 1051
E P+ ++ VI S+ A T +VA K++
Sbjct: 791 SEE-PQEDMEVIV--------------KCCSWSADGT----------RIMVAAKN--KIF 823
Query: 1052 KYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQT 1189
++ +S ++ +GH +HCV FSPDG + + S+D T+RLW+T
Sbjct: 824 LWNMDSCLKVADCRGHLSWVHCVMFSPDGSSFLTSSDDQTIRLWET 869
Score = 58.9 bits (141), Expect = 2e-08
Identities = 44/199 (22%), Positives = 86/199 (43%), Gaps = 2/199 (1%)
Frame = +2
Query: 647 YLLTGGQDKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQILSA-DDKTVRLWDHA 823
Y+ GG+D + I +L I GH ++ + + K ++S+ DD ++++W+
Sbjct: 933 YIAFGGEDGAVEILELLNNRIFQSRI-GHKKTVRHIQFTDDGKTLISSSDDSSIQVWNWQ 991
Query: 824 TMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIAFHSAISLDPIKSFEAPA-TINSASL 1000
+ V +V + + ++L ++ ++ S I+ K F T+ S +
Sbjct: 992 SEEYVFLQAHQETVKDFKLLKNSKLLSWSFDGTVKIWSIITGRIEKDFVCHQDTVLSCDI 1051
Query: 1001 HPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRL 1180
P+ + D + + L +GH G + C FS D L A+G ++G +R+
Sbjct: 1052 SPDATKFSSTSADKTAKIWSFELLSPLHELRGHKGCVRCSVFSVDSTLLATGDDNGEIRI 1111
Query: 1181 WQTVVGKTYGLWKCVLPEE 1237
W G+ L +L EE
Sbjct: 1112 WNVSNGELLHLCAPILVEE 1130
Score = 55.5 bits (132), Expect = 2e-07
Identities = 45/254 (17%), Positives = 102/254 (40%), Gaps = 15/254 (5%)
Frame = +2
Query: 467 TFLGHKGAVWGATLNXXXXXXXXXXXXXXXXVWDAVSGDELMTLAHKH------------ 610
T GH +V + +WD S +E ++ K
Sbjct: 739 TMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDVKSANERKSINVKQFFLNSEEPQEDM 798
Query: 611 --IVKTVDFTQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQIL 784
IVK ++ D ++ ++K+ +++++ + + GH S + ++ + L
Sbjct: 799 EVIVKCCSWSADGTRIMVAAKNKIF-LWNMDSC-LKVADCRGHLSWVHCVMFSPDGSSFL 856
Query: 785 -SADDKTVRLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIAFHSAISLDPIK 961
S+DD+T+RLW+ + + ++ + + E E++V+
Sbjct: 857 TSSDDQTIRLWETKKVCKNSAIVLKQEIDVV--FQENEVMVLAVDNIKRLQLINGKTGQI 914
Query: 962 SFEAPATINSASLHPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGE 1141
+ A ++ L P +++ GGED + + + +S GH + ++F+ DG+
Sbjct: 915 DYLIEAQVSCCCLSPHLQYIAFGGEDGAVEILELLNNRIFQSRIGHKKTVRHIQFTDDGK 974
Query: 1142 LYASGSEDGTLRLW 1183
S S+D ++++W
Sbjct: 975 TLISSSDDSSIQVW 988
Database: RefSeqCP
Posted date: Aug 1, 2006 9:25 PM
Number of letters in database: 19,266,565
Number of sequences in database: 33,732
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,106,704
Number of Sequences: 33732
Number of extensions: 1387435
Number of successful extensions: 5296
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 3581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4774
length of database: 19,266,565
effective HSP length: 109
effective length of database: 15,589,777
effective search space used: 7841657831
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0035_D10
(1838 letters)
Database: RefSeqHP
39,411 sequences; 17,774,539 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_009109.2| serine/threonine kinase receptor associated pro... 644 0.0
Alignment gi|XP_293026.5| PREDICTED: similar to Serine-threonine kinase r... 570 e-162
Alignment gi|NP_037361.1| apoptotic protease activating factor isoform a ... 88 3e-17
Alignment gi|NP_863651.1| apoptotic protease activating factor isoform c ... 88 3e-17
Alignment gi|NP_003748.1| eukaryotic translation initiation factor 3, sub... 88 3e-17
Alignment gi|NP_056241.2| WD repeat domain 51A [Homo sapiens] 86 1e-16
Alignment gi|NP_001151.1| apoptotic protease activating factor isoform b ... 85 2e-16
Alignment gi|NP_078808.3| sperm associated antigen 16 isoform 1 [Homo sap... 85 2e-16
Alignment gi|NP_863658.1| apoptotic protease activating factor isoform d ... 85 2e-16
Alignment gi|NP_758440.1| WD repeat domain 51B [Homo sapiens] 82 2e-15
>ref|NP_009109.2| serine/threonine kinase receptor associated protein [Homo sapiens]
Length = 350
Score = 644 bits (1660), Expect = 0.0
Identities = 312/350 (89%), Positives = 317/350 (90%)
Frame = +2
Query: 308 MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKG 487
MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKG
Sbjct: 1 MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKG 60
Query: 488 AVWGATLNXXXXXXXXXXXXXXXXVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQ 667
AVWGATLN VWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQ
Sbjct: 61 AVWGATLNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQ 120
Query: 668 DKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQILSADDKTVRLWDHATMTEVKSL 847
DKLLRIYDLNKPEAEPKEISGH+SGIKKALWCSEDKQILSADDKTVRLWDHATMTEVKSL
Sbjct: 121 DKLLRIYDLNKPEAEPKEISGHTSGIKKALWCSEDKQILSADDKTVRLWDHATMTEVKSL 180
Query: 848 NFNMSVSSMEYIPEGEILVITYGRSIAFHSAISLDPIKSFEAPATINSASLHPEKEFLVA 1027
NFNMSVSSMEYIPEGEILVITYGRSIAFHSA+SLDPIKSFEAPATINSASLHPEKEFLVA
Sbjct: 181 NFNMSVSSMEYIPEGEILVITYGRSIAFHSAVSLDPIKSFEAPATINSASLHPEKEFLVA 240
Query: 1028 GGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQTVVGKTY 1207
GGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQTVVGKTY
Sbjct: 241 GGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQTVVGKTY 300
Query: 1208 GLWKCVLPEEDSGELAKPKISFPXXXXXXXXXXXXXNSDSIYSSTPEVKA 1357
GLWKCVLPEEDSGELAKPKI FP NS+ I+ S P+VKA
Sbjct: 301 GLWKCVLPEEDSGELAKPKIGFPETTEEELEEIASENSECIFPSAPDVKA 350
>ref|XP_293026.5| PREDICTED: similar to Serine-threonine kinase receptor-associated
protein (UNR-interacting protein) (WD-40 repeat protein
PT-WD) (MAP activator with WD repeats) [Homo sapiens]
Length = 566
Score = 570 bits (1469), Expect = e-162
Identities = 291/371 (78%), Positives = 306/371 (82%), Gaps = 1/371 (0%)
Frame = +2
Query: 248 EEKRRDDPQLSCGIARLAAAMAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGK 427
E K D+ QL+ +A A MAMRQT LT GHT P+VDLAFSGIT YGYFL SA KDGK
Sbjct: 199 ERKENDNTQLASLVAGFTATMAMRQTLLTYFGHTWPMVDLAFSGITTYGYFLTSAYKDGK 258
Query: 428 PMLRQGDTGDWIGTFLGHKGAVWGATLNXXXXXXXXXXXXXXXXVWDAVSGDELMTLAHK 607
PMLRQGDTGDWIGTF GHKGAVWGATLN VWDAV GDELMTLAHK
Sbjct: 259 PMLRQGDTGDWIGTFWGHKGAVWGATLNATKAATAAADFTAK--VWDAVLGDELMTLAHK 316
Query: 608 HIVKTVDFTQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHSSGIKKAL-WCSEDKQIL 784
+IVKTV F QDSNYLLT GQDKLLR+YDLNKP+A PKEISGH+SGIKK L WCSEDKQIL
Sbjct: 317 YIVKTVYFMQDSNYLLTKGQDKLLRMYDLNKPKARPKEISGHTSGIKKRLLWCSEDKQIL 376
Query: 785 SADDKTVRLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIAFHSAISLDPIKS 964
SADDKT RLWDHATMTEVKSLNFNMSVSS +YIPEGEILVITYG SIAFHSA+SLDPI S
Sbjct: 377 SADDKTARLWDHATMTEVKSLNFNMSVSSTKYIPEGEILVITYGLSIAFHSAVSLDPITS 436
Query: 965 FEAPATINSASLHPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGEL 1144
FEAPATINSASLHPEKEFLVAGGEDFKLYKY +N GEE ESYKG+FGPIHCVRFS DGEL
Sbjct: 437 FEAPATINSASLHPEKEFLVAGGEDFKLYKY-FNHGEEFESYKGYFGPIHCVRFSRDGEL 495
Query: 1145 YASGSEDGTLRLWQTVVGKTYGLWKCVLPEEDSGELAKPKISFPXXXXXXXXXXXXXNSD 1324
YASGSEDGTLRL QTVVGKTYGLWKCVLPEE+SGELAKPKI FP +SD
Sbjct: 496 YASGSEDGTLRLGQTVVGKTYGLWKCVLPEEESGELAKPKIGFPETTEEELEEIVSEDSD 555
Query: 1325 SIYSSTPEVKA 1357
IYSSTP+VKA
Sbjct: 556 CIYSSTPDVKA 566
>ref|NP_037361.1| apoptotic protease activating factor isoform a [Homo sapiens]
Length = 1237
Score = 87.8 bits (216), Expect = 3e-17
Identities = 73/303 (24%), Positives = 128/303 (42%), Gaps = 21/303 (6%)
Frame = +2
Query: 344 HTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNXXXX 523
HT V FS G + S D + + +TG+ + H+ V +
Sbjct: 603 HTDAVYHACFS---EDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDR 659
Query: 524 XXXXXXXXXXXXVWDAVSGDELMTL-AHKHIVKTVDFTQDSNYLL--TGGQDKLLRIYDL 694
+W++++G+ + T H V FT S++LL TG D L+++DL
Sbjct: 660 FIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDL 719
Query: 695 NKPEAEPKEISGHSSGIKKALWCSEDKQILSAD-DKTVRLWDHATMTEVKSLNFNMSVSS 871
N+ E + GH++ + + +DK + S D T++LWD + E KS+N +
Sbjct: 720 NQKECR-NTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLN 778
Query: 872 MEYIPE---------------GEILVITYGRSIAF--HSAISLDPIKSFEAPATINSASL 1000
+E E I+V + F H++ L I + +TI
Sbjct: 779 LEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHH-STIQYCDF 837
Query: 1001 HPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRL 1180
P+ V + + ++ +S ++ +GH +H V FSPDG + + S+D T+RL
Sbjct: 838 SPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRL 897
Query: 1181 WQT 1189
W+T
Sbjct: 898 WET 900
>ref|NP_863651.1| apoptotic protease activating factor isoform c [Homo sapiens]
Length = 1248
Score = 87.8 bits (216), Expect = 3e-17
Identities = 73/303 (24%), Positives = 128/303 (42%), Gaps = 21/303 (6%)
Frame = +2
Query: 344 HTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNXXXX 523
HT V FS G + S D + + +TG+ + H+ V +
Sbjct: 614 HTDAVYHACFS---EDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDR 670
Query: 524 XXXXXXXXXXXXVWDAVSGDELMTL-AHKHIVKTVDFTQDSNYLL--TGGQDKLLRIYDL 694
+W++++G+ + T H V FT S++LL TG D L+++DL
Sbjct: 671 FIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDL 730
Query: 695 NKPEAEPKEISGHSSGIKKALWCSEDKQILSAD-DKTVRLWDHATMTEVKSLNFNMSVSS 871
N+ E + GH++ + + +DK + S D T++LWD + E KS+N +
Sbjct: 731 NQKECR-NTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLN 789
Query: 872 MEYIPE---------------GEILVITYGRSIAF--HSAISLDPIKSFEAPATINSASL 1000
+E E I+V + F H++ L I + +TI
Sbjct: 790 LEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHH-STIQYCDF 848
Query: 1001 HPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRL 1180
P+ V + + ++ +S ++ +GH +H V FSPDG + + S+D T+RL
Sbjct: 849 SPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRL 908
Query: 1181 WQT 1189
W+T
Sbjct: 909 WET 911
>ref|NP_003748.1| eukaryotic translation initiation factor 3, subunit 2 beta, 36kDa
[Homo sapiens]
Length = 325
Score = 87.8 bits (216), Expect = 3e-17
Identities = 76/312 (24%), Positives = 126/312 (40%), Gaps = 27/312 (8%)
Frame = +2
Query: 326 PLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGAT 505
P+ GH R + + ++ G L + KD + G+ +GT++GH GAVW
Sbjct: 3 PILLQGHERSITQIKYNR---EGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVD 59
Query: 506 LNXXXXXXXXXXXXXXXXVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTG-----GQD 670
+ +WD +G +L L V+T F N ++ G
Sbjct: 60 ADWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMGYQ 119
Query: 671 KLLRIYDLNKPEA----EP-KEISGHSSGIKKALWCSEDKQILSADDKTVRLWDHATMTE 835
+ +DL P EP +I + S I A+W + I++ + A E
Sbjct: 120 CFVSFFDLRDPSQIDNNEPYMKIPCNDSKITSAVWGPLGECIIAGHESGELNQYSAKSGE 179
Query: 836 V--KSLNFNMSVSSMEYIPEGEILVITYGRSIA-FHSAISLDPIKSFEAPATINSASLHP 1006
V + ++ ++ + + V + A + +L+ K+F +NSA+L P
Sbjct: 180 VLVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDSTTLEHQKTFRTERPVNSAALSP 239
Query: 1007 EKEFLVAGGED--------------FKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGEL 1144
+ +V GG F+ + EE KGHFGPI+ V F PDG+
Sbjct: 240 NYDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPINSVAFHPDGKS 299
Query: 1145 YASGSEDGTLRL 1180
Y+SG EDG +R+
Sbjct: 300 YSSGGEDGYVRI 311
Score = 62.0 bits (149), Expect = 2e-09
Identities = 50/220 (22%), Positives = 99/220 (45%), Gaps = 19/220 (8%)
Frame = +2
Query: 587 LMTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRI-YDLNKPEAEPKEISGHSSGIKKALWC 763
++ H+ + + + ++ + L T +D ++ + Y +N E G G A+WC
Sbjct: 4 ILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNG------ERLGTYMGHTGAVWC 57
Query: 764 SE----DKQILSAD-DKTVRLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIA 928
+ K +L+ D + RLWD T ++ L N +V + + G I++ + + +
Sbjct: 58 VDADWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMG 117
Query: 929 FHSAISLDPIKS----------FEAPAT---INSASLHPEKEFLVAGGEDFKLYKYDYNS 1069
+ +S ++ + P I SA P E ++AG E +L +Y S
Sbjct: 118 YQCFVSFFDLRDPSQIDNNEPYMKIPCNDSKITSAVWGPLGECIIAGHESGELNQYSAKS 177
Query: 1070 GEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQT 1189
GE L + K H I+ ++ S D ++ + S+D T +L+ +
Sbjct: 178 GEVLVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDS 217
>ref|NP_056241.2| WD repeat domain 51A [Homo sapiens]
Length = 407
Score = 85.9 bits (211), Expect = 1e-16
Identities = 62/250 (24%), Positives = 109/250 (43%), Gaps = 10/250 (4%)
Frame = +2
Query: 470 FLGHKGAVWGATLNXXXXXXXXXXXXXXXXVW-DAVSGDELMTLAHKHIVKTVDFTQDSN 646
F GHK AV + +W V G+ + AH V++V F D
Sbjct: 57 FTGHKDAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQ 116
Query: 647 YLLTGGQDKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQILSA-DDKTVRLWDHA 823
+T DK ++++ ++ + +S H + ++ A + + + I+SA DDKTV+LWD +
Sbjct: 117 SFVTASDDKTVKVWATHRQKFL-FSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKS 175
Query: 824 TMTEVKSL-NFNMSVSSMEYIPEGEILVITYGRSIAFHSAISLDPIKSFEA-------PA 979
+ V S V+ +++ P G + + + + + ++++ A
Sbjct: 176 SRECVHSYCEHGGFVTYVDFHPSGTCIA-----AAGMDNTVKVWDVRTYRLLQHYQLHSA 230
Query: 980 TINSASLHPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGS 1159
+N S HP +L+ D L D G L + GH GP V FS GE +ASG
Sbjct: 231 AVNGLSFHPSGNYLITASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGG 290
Query: 1160 EDGTLRLWQT 1189
D + +W++
Sbjct: 291 SDEQVMVWKS 300
>ref|NP_001151.1| apoptotic protease activating factor isoform b [Homo sapiens]
Length = 1194
Score = 85.1 bits (209), Expect = 2e-16
Identities = 69/286 (24%), Positives = 120/286 (41%), Gaps = 4/286 (1%)
Frame = +2
Query: 344 HTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNXXXX 523
HT V FS G + S D + + +TG+ + H+ V +
Sbjct: 603 HTDAVYHACFS---EDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDR 659
Query: 524 XXXXXXXXXXXXVWDAVSGDELMTL-AHKHIVKTVDFTQDSNYLL--TGGQDKLLRIYDL 694
+W++++G+ + T H V FT S++LL TG D L+++DL
Sbjct: 660 FIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDL 719
Query: 695 NKPEAEPKEISGHSSGIKKALWCSEDKQILSAD-DKTVRLWDHATMTEVKSLNFNMSVSS 871
N+ E + GH++ + + +DK + S D T++LWD + E KS+N +
Sbjct: 720 NQKECR-NTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLN 778
Query: 872 MEYIPEGEILVITYGRSIAFHSAISLDPIKSFEAPATINSASLHPEKEFLVAGGEDFKLY 1051
+E DP + E S S + + A K++
Sbjct: 779 LE------------------------DPQEDMEVIVKCCSWSADGARIMVAAKN---KIF 811
Query: 1052 KYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQT 1189
++ +S ++ +GH +H V FSPDG + + S+D T+RLW+T
Sbjct: 812 LWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWET 857
>ref|NP_078808.3| sperm associated antigen 16 isoform 1 [Homo sapiens]
Length = 631
Score = 85.1 bits (209), Expect = 2e-16
Identities = 87/310 (28%), Positives = 118/310 (38%), Gaps = 4/310 (1%)
Frame = +2
Query: 266 DPQLSCGIARLAAAMAMRQTP--LTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLR 439
D +SCG RL + + + LT GHT + D F P G L ++ D L
Sbjct: 365 DILVSCGEDRLWKVLGLPKCNVLLTGFGHTDWLSDCCFH---PSGDKLATSSGDTTVKLW 421
Query: 440 QGDTGDWIGTFLGHKGAVWGATLNXXXXXXXXXXXXXXXXVWDAVSGDELMTL-AHKHIV 616
GD I TF GH AVW T + +WD S TL H V
Sbjct: 422 DLCKGDCILTFEGHSRAVWSCTWHSCGNFVASSSLDKTSKIWDVNSERCRCTLYGHTDSV 481
Query: 617 KTVDFTQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQILSADD 796
+++F SN LLT DK L I+D E + + GH I A++ I S D
Sbjct: 482 NSIEFFPFSNTLLTSSADKTLSIWDARTGICE-QSLYGHMHSINDAIFDPRGHMIASCDA 540
Query: 797 KTV-RLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIAFHSAISLDPIKSFEA 973
V +LWD + + S++ S P E+ + GR +A S +
Sbjct: 541 CGVTKLWDFRKLLPIVSIDIGPS-------PGNEVNFDSSGRVLAQASGNGV-------- 585
Query: 974 PATINSASLHPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYAS 1153
++ D SGE + GH H V FS DGE+ S
Sbjct: 586 ------------------------IHLLDLKSGE-IHKLMGHENEAHTVVFSHDGEILFS 620
Query: 1154 GSEDGTLRLW 1183
G DGT+R W
Sbjct: 621 GGSDGTVRTW 630
>ref|NP_863658.1| apoptotic protease activating factor isoform d [Homo sapiens]
Length = 1205
Score = 85.1 bits (209), Expect = 2e-16
Identities = 69/286 (24%), Positives = 120/286 (41%), Gaps = 4/286 (1%)
Frame = +2
Query: 344 HTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNXXXX 523
HT V FS G + S D + + +TG+ + H+ V +
Sbjct: 614 HTDAVYHACFS---EDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDR 670
Query: 524 XXXXXXXXXXXXVWDAVSGDELMTL-AHKHIVKTVDFTQDSNYLL--TGGQDKLLRIYDL 694
+W++++G+ + T H V FT S++LL TG D L+++DL
Sbjct: 671 FIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDL 730
Query: 695 NKPEAEPKEISGHSSGIKKALWCSEDKQILSAD-DKTVRLWDHATMTEVKSLNFNMSVSS 871
N+ E + GH++ + + +DK + S D T++LWD + E KS+N +
Sbjct: 731 NQKECR-NTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLN 789
Query: 872 MEYIPEGEILVITYGRSIAFHSAISLDPIKSFEAPATINSASLHPEKEFLVAGGEDFKLY 1051
+E DP + E S S + + A K++
Sbjct: 790 LE------------------------DPQEDMEVIVKCCSWSADGARIMVAAKN---KIF 822
Query: 1052 KYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQT 1189
++ +S ++ +GH +H V FSPDG + + S+D T+RLW+T
Sbjct: 823 LWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWET 868
>ref|NP_758440.1| WD repeat domain 51B [Homo sapiens]
Length = 478
Score = 82.0 bits (201), Expect = 2e-15
Identities = 73/300 (24%), Positives = 122/300 (40%), Gaps = 17/300 (5%)
Frame = +2
Query: 341 GHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNXXX 520
GH + L S P G L +A D ML ++GHK V +
Sbjct: 16 GHKAAITSLDLS---PNGKQLATASWDTFLMLWNFKPHARAYRYVGHKDVVTSVQFSPHG 72
Query: 521 XXXXXXXXXXXXXVWDAVSGDELMTL-AHKHIVKTVDFTQDSNYLLTGGQDKLLRIYDLN 697
+W + AH V++VDF+ D +L T +DK ++++ +
Sbjct: 73 NLLASASRDRTVRLWIPDKRGKFSEFKAHTAPVRSVDFSADGQFLATASEDKSIKVWSMY 132
Query: 698 KPEAEPKEISGHSSGIKKALWCSEDKQILS-ADDKTVRLWDHATMTEVKSLNFNMSVSSM 874
+ + + H+ ++ A + + + I+S ++DKT+++WD V NF+ SV
Sbjct: 133 R-QRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVN--NFSDSVGFA 189
Query: 875 EYI---PEGEILVITYGRSIAFHSAISLDPIKSFEAPAT------------INSASLHPE 1009
++ P G + SA S +K ++ +N S HP
Sbjct: 190 NFVDFNPSGTCIA----------SAGSDQTVKVWDVRVNKLLQHYQVHSGGVNCISFHPS 239
Query: 1010 KEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQT 1189
+L+ D L D G + + +GH GP+ V FS GEL+ASG D + LW+T
Sbjct: 240 GNYLITASSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGELFASGGADTQVLLWRT 299
Score = 72.4 bits (176), Expect = 1e-12
Identities = 50/249 (20%), Positives = 112/249 (44%), Gaps = 5/249 (2%)
Frame = +2
Query: 470 FLGHKGAVWGATLNXXXXXXXXXXXXXXXXVWD-AVSGDELMTLAHKHIVKTVDFTQDSN 646
F GHK A+ L+ +W+ + HK +V +V F+ N
Sbjct: 14 FKGHKAAITSLDLSPNGKQLATASWDTFLMLWNFKPHARAYRYVGHKDVVTSVQFSPHGN 73
Query: 647 YLLTGGQDKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQILSA-DDKTVRLWDHA 823
L + +D+ +R++ +K + E H++ ++ + ++ + + +A +DK++++W
Sbjct: 74 LLASASRDRTVRLWIPDK-RGKFSEFKAHTAPVRSVDFSADGQFLATASEDKSIKVWSMY 132
Query: 824 TMTEVKSLNFNMS-VSSMEYIPEGEILV-ITYGRSIAFHSAISLDPIKSF-EAPATINSA 994
+ SL + V ++ P+G ++V + ++I + + +F ++ N
Sbjct: 133 RQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDSVGFANFV 192
Query: 995 SLHPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTL 1174
+P + + G D + +D + L+ Y+ H G ++C+ F P G + S DGTL
Sbjct: 193 DFNPSGTCIASAGSDQTVKVWDVRVNKLLQHYQVHSGGVNCISFHPSGNYLITASSDGTL 252
Query: 1175 RLWQTVVGK 1201
++ + G+
Sbjct: 253 KILDLLEGR 261
Database: RefSeqHP
Posted date: Aug 2, 2006 12:57 AM
Number of letters in database: 17,774,539
Number of sequences in database: 39,411
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,280,816
Number of Sequences: 39411
Number of extensions: 1346451
Number of successful extensions: 4808
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 3349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4399
length of database: 17,774,539
effective HSP length: 108
effective length of database: 13,518,151
effective search space used: 6813148104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqSP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0035_D10
(1838 letters)
Database: RefSeqSP
1040 sequences; 434,620 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999415.1| platelet-activating factor acetylhydrolase Ib-a... 69 5e-13
Alignment gi|NP_001012296.1| fizzy/cell division cycle 20 related 1 [Sus ... 67 1e-12
Alignment gi|NP_999497.1| G-beta like protein [Sus scrofa] 57 1e-09
>ref|NP_999415.1| platelet-activating factor acetylhydrolase Ib-alpha subunit [Sus
scrofa]
Length = 410
Score = 68.6 bits (166), Expect = 5e-13
Identities = 66/285 (23%), Positives = 121/285 (42%), Gaps = 3/285 (1%)
Frame = +2
Query: 338 SGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNXX 517
SGH PV + F P ++SA +D + +TGD+ T GH +V + +
Sbjct: 105 SGHRSPVTRVIFH---PVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 161
Query: 518 XXXXXXXXXXXXXXVWDAVSGDELMTL-AHKHIVKTVDFTQDSNYLLTGGQDKLLRIYDL 694
+WD + + T+ H H V +V + +++++ +DK ++++++
Sbjct: 162 GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSAARDKTIKMWEV 221
Query: 695 NKPEAEPKEISGHSSGIKKALWCSEDKQILS-ADDKTVRLWDHATMT-EVKSLNFNMSVS 868
K +GH ++ + I S ++D+TVR+W AT + + V
Sbjct: 222 QTGYCV-KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVE 280
Query: 869 SMEYIPEGEILVITYGRSIAFHSAISLDPIKSFEAPATINSASLHPEKEFLVAGGEDFKL 1048
+ + PE +S+IS EA + S P FL++G D +
Sbjct: 281 CISWAPESS------------YSSIS-------EATGSETKKSGKPGP-FLLSGSRDKTI 320
Query: 1049 YKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLW 1183
+D ++G L + GH + V F G+ S ++D TLR+W
Sbjct: 321 KMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 365
Score = 63.5 bits (153), Expect = 2e-11
Identities = 52/195 (26%), Positives = 87/195 (44%), Gaps = 22/195 (11%)
Frame = +2
Query: 332 TCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLN 511
T GH V +A I P G ++SA +D + + TG + TF GH+ V N
Sbjct: 187 TMHGHDHNVSSVA---IMPNGDHIVSAARDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN 243
Query: 512 XXXXXXXXXXXXXXXXVWDAVSGDELMTLA-HKHIVKTVDFTQDSNY------------- 649
VW + + L H+H+V+ + + +S+Y
Sbjct: 244 QDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKK 303
Query: 650 -------LLTGGQDKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQILS-ADDKTV 805
LL+G +DK ++++D++ + GH + ++ L+ S K ILS ADDKT+
Sbjct: 304 SGKPGPFLLSGSRDKTIKMWDVSTGMCL-MTLVGHDNWVRGVLFHSGGKFILSCADDKTL 362
Query: 806 RLWDHATMTEVKSLN 850
R+WD+ +K+LN
Sbjct: 363 RVWDYKNKRCMKTLN 377
Score = 57.0 bits (136), Expect = 1e-09
Identities = 42/167 (25%), Positives = 82/167 (49%), Gaps = 9/167 (5%)
Frame = +2
Query: 710 EPKEISGHSSGIKKALWCSEDKQILSA-DDKTVRLWDHATMTEVKSLNFNM-SVSSMEYI 883
E +SGH S + + ++ ++SA +D T+++WD+ T ++L + SV + +
Sbjct: 100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD 159
Query: 884 PEGEILVITYGRSIAFHSAISLDPIKSFEAPAT-------INSASLHPEKEFLVAGGEDF 1042
G++L S + I L + FE T ++S ++ P + +V+ D
Sbjct: 160 HSGKLLA-----SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSAARDK 214
Query: 1043 KLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLW 1183
+ ++ +G ++++ GH + VR + DG L AS S D T+R+W
Sbjct: 215 TIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
Score = 45.8 bits (107), Expect = 3e-06
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Frame = +2
Query: 392 GYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNXXXXXXXXXXXXXXXXVWDA 571
G FL+S +D + TG + T +GH V G + VWD
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367
Query: 572 VSGDELMTL-AHKHIVKTVDFTQDSNYLLTGGQDKLLRIYD 691
+ + TL AH+H V ++DF + + Y++TG D+ +++++
Sbjct: 368 KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
>ref|NP_001012296.1| fizzy/cell division cycle 20 related 1 [Sus scrofa]
Length = 493
Score = 67.4 bits (163), Expect = 1e-12
Identities = 52/225 (23%), Positives = 109/225 (48%), Gaps = 10/225 (4%)
Frame = +2
Query: 560 VWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRIYDLNKPEAEP-KEISGHS 736
+WDA +G +L L H + +++ L +G +D+++ D+ P + + + GH
Sbjct: 255 IWDAAAGKKLSML-EGHTARVGALAWNADQLSSGSRDRMILQRDIRTPPLQSERRLQGHR 313
Query: 737 SGIKKALWCSEDKQILSA--DDKTVRLWDHATMTEVKSLNFNMS-VSSMEYIPEGEILVI 907
+ W S D Q+L++ +D + +W+H++++ V+ +++ V ++ + P L+
Sbjct: 314 QEVCGLKW-STDHQLLASGGNDNKLLVWNHSSLSPVQQYTEHLAAVKAIAWSPHQHGLLA 372
Query: 908 TYG----RSIAFHSAISLDPIKSFEAPATINSASLHPEKEFLVA--GGEDFKLYKYDYNS 1069
+ G R I F + ++ P++ + + + + + LV+ G ++ + Y S
Sbjct: 373 SGGGTADRCIRFWNTLTGQPLQCIDTGSQVCNLAWSKHANELVSTHGYSQNQILVWKYPS 432
Query: 1070 GEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQTVVGKT 1204
++ GH + + SPDGE +G+ D TLR W V KT
Sbjct: 433 LTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFW-NVFSKT 476
>ref|NP_999497.1| G-beta like protein [Sus scrofa]
Length = 317
Score = 57.0 bits (136), Expect = 1e-09
Identities = 44/204 (21%), Positives = 94/204 (46%), Gaps = 10/204 (4%)
Frame = +2
Query: 602 HKHIVKTVDFTQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQI 781
H H V V + D + L+G D LR++DL + GH+ + + S+++QI
Sbjct: 62 HSHFVSDVVISSDGQFALSGSWDGTLRLWDLT-TGTTTRRFVGHTKDVLSVAFSSDNRQI 120
Query: 782 LSAD-DKTVRLWDHATMTE--VKSLNFNMSVSSMEYIPEGEILVITYGRSIAFHSAISLD 952
+S DKT++LW+ + + V+ + + VS + + P +I S + + +
Sbjct: 121 VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIV---SCGWDKLVKVW 177
Query: 953 PIKSFEAPAT-------INSASLHPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPI 1111
+ + + +N+ ++ P+ +GG+D + +D N G+ L + G I
Sbjct: 178 NLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DII 236
Query: 1112 HCVRFSPDGELYASGSEDGTLRLW 1183
+ + FSP+ + + ++++W
Sbjct: 237 NALCFSPN-RYWLCAATGPSIKIW 259
Database: RefSeqSP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 434,620
Number of sequences in database: 1040
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,450,325
Number of Sequences: 1040
Number of extensions: 32736
Number of successful extensions: 112
Number of sequences better than 1.0e-05: 3
Number of HSP's better than 0.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 434,620
effective HSP length: 82
effective length of database: 349,340
effective search space used: 185150200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0035_D10
(1838 letters)
Database: RefSeqMP
45,328 sequences; 21,768,885 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035629.1| serine/threonine kinase receptor associated pro... 647 0.0
Alignment gi|NP_033814.1| apoptotic protease activating factor 1 [Mus mus... 89 2e-17
Alignment gi|NP_081630.1| WD repeat domain 51A [Mus musculus] 88 3e-17
Alignment gi|NP_061269.1| eukaryotic translation initiation factor 3, sub... 87 5e-17
Alignment gi|NP_796316.1| TAF5 RNA polymerase II, TATA box binding protei... 78 4e-14
Alignment gi|NP_082016.1| WD repeat domain 51B [Mus musculus] 78 4e-14
Alignment gi|NP_080004.1| sperm associated antigen 16 isoform 2 [Mus musc... 77 8e-14
Alignment gi|NP_083436.2| sperm associated antigen 16 isoform 1 [Mus musc... 77 8e-14
Alignment gi|NP_543124.1| WD repeat domain 5 [Mus musculus] 75 2e-13
Alignment gi|NP_083963.1| hypothetical protein LOC76646 [Mus musculus] 75 3e-13
>ref|NP_035629.1| serine/threonine kinase receptor associated protein [Mus musculus]
Length = 351
Score = 647 bits (1668), Expect = 0.0
Identities = 316/351 (90%), Positives = 320/351 (91%), Gaps = 1/351 (0%)
Frame = +2
Query: 308 MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKG 487
MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKG
Sbjct: 1 MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKG 60
Query: 488 AVWGATLNXXXXXXXXXXXXXXXXVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQ 667
AVWGATLN VWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQ
Sbjct: 61 AVWGATLNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQ 120
Query: 668 DKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQILSADDKTVRLWDHATMTEVKSL 847
DKLLRIYDLNKPEAEPKEISGH+SGIKKALWCS+DKQILSADDKTVRLWDHATMTEVKSL
Sbjct: 121 DKLLRIYDLNKPEAEPKEISGHTSGIKKALWCSDDKQILSADDKTVRLWDHATMTEVKSL 180
Query: 848 NFNMSVSSMEYIPEGEILVITYGRSIAFHSAISLDPIKSFEAPATINSASLHPEKEFLVA 1027
NFNMSVSSMEYIPEGEILVITYGRSIAFHSA+SL+PIKSFEAPATINSASLHPEKEFLVA
Sbjct: 181 NFNMSVSSMEYIPEGEILVITYGRSIAFHSAVSLEPIKSFEAPATINSASLHPEKEFLVA 240
Query: 1028 GGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQTVVGKTY 1207
GGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQTVVGKTY
Sbjct: 241 GGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQTVVGKTY 300
Query: 1208 GLWKCVLPEEDSGELAKPKISFP-XXXXXXXXXXXXXNSDSIYSSTPEVKA 1357
GLWKCVLPEEDSGELAKPKI FP NSDSIYSSTPEVKA
Sbjct: 301 GLWKCVLPEEDSGELAKPKIGFPETAEEELAEEIASENSDSIYSSTPEVKA 351
>ref|NP_033814.1| apoptotic protease activating factor 1 [Mus musculus]
Length = 1238
Score = 88.6 bits (218), Expect = 2e-17
Identities = 74/302 (24%), Positives = 128/302 (42%), Gaps = 22/302 (7%)
Frame = +2
Query: 350 RPVVDLAFSGITPYGYFLISACKDGKPM-LRQGDTGDWIGTFLGHKGAVWGATLNXXXXX 526
RP D + I++C K + + + +TG+ + H+ V +
Sbjct: 601 RPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSY 660
Query: 527 XXXXXXXXXXXVWDAVSGDELMTL-AHKHIVKTVDFTQDSNYLL--TGGQDKLLRIYDLN 697
+WD+ +G + T H V FT SN+LL TG D L+++DLN
Sbjct: 661 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNSSNHLLLATGSNDFFLKLWDLN 720
Query: 698 KPEAEPKEISGHSSGIKKALWCSEDKQILSAD-DKTVRLWDHATMTEVKSLNFNMSVSSM 874
+ E + GH++ + + +D+ + S D T+RLWD + E KS+N S
Sbjct: 721 QKECR-NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSS 779
Query: 875 EYIPEG---------------EILVITYGRSIAF--HSAISLDPIKSFEAPATINSASLH 1003
E PE +I+V + + F H++ L I + +TI
Sbjct: 780 EDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHH-STIQYCDFS 838
Query: 1004 PEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLW 1183
P V + + ++ +S ++ +GH +H V FSPDG + + S+D T+R+W
Sbjct: 839 PYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVW 898
Query: 1184 QT 1189
+T
Sbjct: 899 ET 900
Score = 53.5 bits (127), Expect = 7e-07
Identities = 40/189 (21%), Positives = 86/189 (45%), Gaps = 4/189 (2%)
Frame = +2
Query: 647 YLLTGGQDKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQILSA-DDKTVRLWDHA 823
Y+ G +D ++I +L + GH ++ + ++ K ++S+ +D +++W+
Sbjct: 964 YVAFGDEDGAIKIIELPNNRVFSSGV-GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ 1022
Query: 824 TMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIAFHSAISLDPIKSFEA-PATINSASL 1000
T V +V + + +L ++ ++ + I+ + F T+ S ++
Sbjct: 1023 TGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAI 1082
Query: 1001 HPE--KEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTL 1174
+ K + + K++ +D S L KGH G + C FS DG L A+G ++G +
Sbjct: 1083 SSDATKFSSTSADKTAKIWSFDLLS--PLHELKGHNGCVRCSAFSLDGILLATGDDNGEI 1140
Query: 1175 RLWQTVVGK 1201
R+W G+
Sbjct: 1141 RIWNVSDGQ 1149
Score = 50.1 bits (118), Expect = 8e-06
Identities = 35/200 (17%), Positives = 81/200 (40%), Gaps = 1/200 (0%)
Frame = +2
Query: 602 HKHIVKTVDFTQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQI 781
H ++ DF+ + + + +++++ + + GH S + ++ +
Sbjct: 828 HHSTIQYCDFSPYDHLAVIALSQYCVELWNIDS-RLKVADCRGHLSWVHGVMFSPDGSSF 886
Query: 782 LSA-DDKTVRLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIAFHSAISLDPI 958
L+A DD+T+R+W+ + + ++ + + E E +V+
Sbjct: 887 LTASDDQTIRVWETKKVCKNSAIVLKQEIDVV--FQENETMVLAVDNIRGLQLIAGKTGQ 944
Query: 959 KSFEAPATINSASLHPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDG 1138
+ A ++ L P E++ G ED + + + S GH + ++F+ DG
Sbjct: 945 IDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADG 1004
Query: 1139 ELYASGSEDGTLRLWQTVVG 1198
+ S SED +++W G
Sbjct: 1005 KTLISSSEDSVIQVWNWQTG 1024
>ref|NP_081630.1| WD repeat domain 51A [Mus musculus]
Length = 405
Score = 88.2 bits (217), Expect = 3e-17
Identities = 81/321 (25%), Positives = 134/321 (41%), Gaps = 9/321 (2%)
Frame = +2
Query: 341 GHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNXXX 520
GH V + FS T + L S D M+ + F GHK AV +
Sbjct: 17 GHRDAVTCVDFSLNTKH---LASGSMDSTLMIWHMKSQSRAYRFTGHKDAVTCVNFSPSG 73
Query: 521 XXXXXXXXXXXXXVW-DAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRIYDLN 697
+W V G+ + AH V++V F D L+T DK ++++ +
Sbjct: 74 HLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSLVTASDDKTVKVWSTH 133
Query: 698 KPEAEPKEISGHSSGIKKALWCSEDKQILSA-DDKTVRLWDHATMTEVKSL-NFNMSVSS 871
+ + ++ H + ++ A + + + I+SA DDKTV+LWD + + S V+
Sbjct: 134 R-QRFLFSLTQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECIHSYCEHGGFVTY 192
Query: 872 MEYIPEGEILVIT-YGRSIAFHSAISLDPIKSFEA-PATINSASLHPEKEFLVAGGEDFK 1045
+++ P G + ++ A + ++ ++ A +N+ S HP +L+ D
Sbjct: 193 VDFHPSGTCIAAAGMDNTVKVWDARTHRLLQHYQLHSAAVNALSFHPSGNYLITASSDST 252
Query: 1046 LYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQTVVG-KTYGLWKC 1222
L D G L + GH GP V FS GE +ASG D + +W++ YG K
Sbjct: 253 LKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVMVWKSNFDIVDYGDMKA 312
Query: 1223 VLP---EEDSGELAKPKISFP 1276
P SG L K + P
Sbjct: 313 RRPPPLTSSSGTLPKMDLPVP 333
>ref|NP_061269.1| eukaryotic translation initiation factor 3, subunit 2 (beta) [Mus
musculus]
Length = 325
Score = 87.4 bits (215), Expect = 5e-17
Identities = 75/312 (24%), Positives = 126/312 (40%), Gaps = 27/312 (8%)
Frame = +2
Query: 326 PLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGAT 505
P+ GH R + + ++ G L + KD + G+ +GT++GH GAVW
Sbjct: 3 PILLQGHERSITQIKYNR---EGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVD 59
Query: 506 LNXXXXXXXXXXXXXXXXVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTG-----GQD 670
+ +WD +G +L L V+T F N ++ G
Sbjct: 60 ADWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMGYQ 119
Query: 671 KLLRIYDLNKPEA----EP-KEISGHSSGIKKALWCSEDKQILSADDKTVRLWDHATMTE 835
+ +DL P EP +I + S I A+W + +++ + A E
Sbjct: 120 CFVSFFDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECVIAGHESGELNQYSAKSGE 179
Query: 836 V--KSLNFNMSVSSMEYIPEGEILVITYGRSIA-FHSAISLDPIKSFEAPATINSASLHP 1006
V + ++ ++ + + V + A + +L+ K+F +NSA+L P
Sbjct: 180 VLVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDSTTLEHQKTFRTERPVNSAALSP 239
Query: 1007 EKEFLVAGGED--------------FKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGEL 1144
+ +V GG F+ + EE KGHFGPI+ V F PDG+
Sbjct: 240 NYDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPINSVAFHPDGKS 299
Query: 1145 YASGSEDGTLRL 1180
Y+SG EDG +R+
Sbjct: 300 YSSGGEDGYVRI 311
Score = 62.4 bits (150), Expect = 2e-09
Identities = 54/220 (24%), Positives = 101/220 (45%), Gaps = 19/220 (8%)
Frame = +2
Query: 587 LMTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRI-YDLNKPEAEPKEISGHSSGIKKALWC 763
++ H+ + + + ++ + L T +D ++ + Y +N E G G A+WC
Sbjct: 4 ILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNG------ERLGTYMGHTGAVWC 57
Query: 764 SE----DKQILSAD-DKTVRLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIA 928
+ K +L+ D + RLWD T ++ L N +V + + G I++ + + +
Sbjct: 58 VDADWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMG 117
Query: 929 FHSAISL----DP--IKSFEA-------PATINSASLHPEKEFLVAGGEDFKLYKYDYNS 1069
+ +S DP I S E + I SA P E ++AG E +L +Y S
Sbjct: 118 YQCFVSFFDLRDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECVIAGHESGELNQYSAKS 177
Query: 1070 GEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQT 1189
GE L + K H I+ ++ S D ++ + S+D T +L+ +
Sbjct: 178 GEVLVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDS 217
>ref|NP_796316.1| TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated
factor, 100kDa [Mus musculus]
Length = 801
Score = 77.8 bits (190), Expect = 4e-14
Identities = 59/203 (29%), Positives = 91/203 (44%), Gaps = 4/203 (1%)
Frame = +2
Query: 614 VKTVDFTQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQILSA- 790
+++V D + + D L RI D K +E K + GHS + A + + +LS+
Sbjct: 505 LRSVKQASDLSLIDKESDDVLERIMD-EKTASELKILYGHSGPVYGASFSPDRNYLLSSS 563
Query: 791 DDKTVRLWDHATMT-EVKSLNFNMSVSSMEYIPEGEILVIT-YGRSIAFHSAISLDPIKS 964
+D TVRLW T T V N V ++ P G V + R + P++
Sbjct: 564 EDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRI 623
Query: 965 FEAP-ATINSASLHPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGE 1141
F A +N HP ++ G D + +D +G + + GH GPIH + FSP+G
Sbjct: 624 FAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGR 683
Query: 1142 LYASGSEDGTLRLWQTVVGKTYG 1210
A+G+ DG + LW G G
Sbjct: 684 FLATGATDGRVLLWDIGHGLMVG 706
Score = 68.6 bits (166), Expect = 2e-11
Identities = 58/242 (23%), Positives = 93/242 (38%), Gaps = 3/242 (1%)
Frame = +2
Query: 476 GHKGAVWGATLNXXXXXXXXXXXXXXXXVWDAVSGDELMTL-AHKHIVKTVDFTQDSNYL 652
GH G V+GA+ + +W + L+ H + V F+ Y
Sbjct: 542 GHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYF 601
Query: 653 LTGGQDKLLRIYDLNKPEAEPKEI-SGHSSGIKKALWCSEDKQILSAD-DKTVRLWDHAT 826
++GG D++ R++ + +P I +GH + + + + + D+TVRLWD
Sbjct: 602 VSGGHDRVARLWATD--HYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWD--- 656
Query: 827 MTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIAFHSAISLDPIKSFEAPATINSASLHP 1006
+ G + I G I+S + P
Sbjct: 657 ------------------VLNGNCVRIFTGHK------------------GPIHSLTFSP 680
Query: 1007 EKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQ 1186
FL G D ++ +D G + KGH + +RFS DGE+ ASGS D T+RLW
Sbjct: 681 NGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWD 740
Query: 1187 TV 1192
V
Sbjct: 741 AV 742
Score = 58.9 bits (141), Expect = 2e-08
Identities = 52/196 (26%), Positives = 85/196 (43%), Gaps = 5/196 (2%)
Frame = +2
Query: 341 GHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNXXX 520
GH PV D FS PYGY+ +S D L D + F GH V +
Sbjct: 584 GHNYPVWDTQFS---PYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNS 640
Query: 521 XXXXXXXXXXXXXVWDAVSGDEL-MTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRIYDLN 697
+WD ++G+ + + HK + ++ F+ + +L TG D + ++D+
Sbjct: 641 NYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIG 700
Query: 698 KPEAEPKEISGHSSGIKKALWCSEDKQILSAD--DKTVRLWDHATMTEVKSLNFNMSVSS 871
E+ GH+ + +L S D +IL++ D TVRLWD E + + +
Sbjct: 701 H-GLMVGELKGHTDTV-CSLRFSRDGEILASGSMDNTVRLWDAVKAFEDLETDDFTTATG 758
Query: 872 MEYIPEG--EILVITY 913
+PE E+L+ TY
Sbjct: 759 HINLPENSQELLLGTY 774
Score = 51.2 bits (121), Expect = 4e-06
Identities = 56/216 (25%), Positives = 89/216 (41%), Gaps = 6/216 (2%)
Frame = +2
Query: 341 GHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNXXX 520
GH+ PV +FS P +L+S+ +DG L T + + GH VW +
Sbjct: 542 GHSGPVYGASFS---PDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYG 598
Query: 521 XXXXXXXXXXXXXVWDAVSGDELMTLA-HKHIVKTVDFTQDSNYLLTGGQDKLLRIYDLN 697
+W L A H V F +SNY+ TG D+ +R++D+
Sbjct: 599 YYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVL 658
Query: 698 KPEAEPKEISGHSSGIKKALWCSEDKQILS-ADDKTVRLWD--HATMT-EVKSLNFNMSV 865
+ +GH I + + + + A D V LWD H M E+K +V
Sbjct: 659 NGNC-VRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELK--GHTDTV 715
Query: 866 SSMEYIPEGEILVITYGRSIAFHSAISL-DPIKSFE 970
S+ + +GEIL S + + + L D +K+FE
Sbjct: 716 CSLRFSRDGEILA-----SGSMDNTVRLWDAVKAFE 746
>ref|NP_082016.1| WD repeat domain 51B [Mus musculus]
Length = 476
Score = 77.8 bits (190), Expect = 4e-14
Identities = 76/311 (24%), Positives = 127/311 (40%), Gaps = 27/311 (8%)
Frame = +2
Query: 338 SGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFL-------------- 475
SG P+++ +F G + + SA D P +Q T W TFL
Sbjct: 3 SGLEDPILERSFKG---HKAAITSA--DFSPNCKQIATASW-DTFLMLWSLKPHARAYRY 56
Query: 476 -GHKGAVWGATLNXXXXXXXXXXXXXXXXVWDAV-SGDELMTLAHKHIVKTVDFTQDSNY 649
GHK V + +W G AH V++VDF+ D
Sbjct: 57 VGHKDVVTSLQFSPQGNLLASASRDRTVRLWVLDRKGKSSEFKAHTAPVRSVDFSADGQL 116
Query: 650 LLTGGQDKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQILS-ADDKTVRLWDHAT 826
L+T +DK ++++ + + + + H+ ++ A + + + I+S ++DKT+++WD
Sbjct: 117 LVTASEDKSIKVWSMFR-QRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTN 175
Query: 827 MTEVKSLNFNMSVSSMEYI---PEGEILVITYGRSIAFHSAISLDPIKSFEA-------P 976
V NF+ SV ++ P G + S A+ + I+ +
Sbjct: 176 KQCVN--NFSDSVGFANFVDFNPNGTCIA-----SAGSDHAVKIWDIRMNKLLQHYQVHS 228
Query: 977 ATINSASLHPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASG 1156
+N S HP LV D + D G + + +GH GP+ V FS DGEL SG
Sbjct: 229 CGVNCLSFHPLGNSLVTASSDGTVKMLDLIEGRLIYTLQGHTGPVFTVSFSKDGELLTSG 288
Query: 1157 SEDGTLRLWQT 1189
D + +W+T
Sbjct: 289 GADAQVLIWRT 299
Score = 70.5 bits (171), Expect = 6e-12
Identities = 47/250 (18%), Positives = 114/250 (45%), Gaps = 5/250 (2%)
Frame = +2
Query: 467 TFLGHKGAVWGATLNXXXXXXXXXXXXXXXXVWDAVSGDELMT-LAHKHIVKTVDFTQDS 643
+F GHK A+ A + +W + HK +V ++ F+
Sbjct: 13 SFKGHKAAITSADFSPNCKQIATASWDTFLMLWSLKPHARAYRYVGHKDVVTSLQFSPQG 72
Query: 644 NYLLTGGQDKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQILSA-DDKTVRLWDH 820
N L + +D+ +R++ L++ + + E H++ ++ + ++ + +++A +DK++++W
Sbjct: 73 NLLASASRDRTVRLWVLDR-KGKSSEFKAHTAPVRSVDFSADGQLLVTASEDKSIKVWSM 131
Query: 821 ATMTEVKSLNFNMS-VSSMEYIPEGEILV-ITYGRSIAFHSAISLDPIKSF-EAPATINS 991
+ SL + V ++ P+G ++V + ++I + + +F ++ N
Sbjct: 132 FRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDSVGFANF 191
Query: 992 ASLHPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGT 1171
+P + + G D + +D + L+ Y+ H ++C+ F P G + S DGT
Sbjct: 192 VDFNPNGTCIASAGSDHAVKIWDIRMNKLLQHYQVHSCGVNCLSFHPLGNSLVTASSDGT 251
Query: 1172 LRLWQTVVGK 1201
+++ + G+
Sbjct: 252 VKMLDLIEGR 261
>ref|NP_080004.1| sperm associated antigen 16 isoform 2 [Mus musculus]
Length = 310
Score = 76.6 bits (187), Expect = 8e-14
Identities = 81/310 (26%), Positives = 117/310 (37%), Gaps = 4/310 (1%)
Frame = +2
Query: 266 DPQLSCGIARLAAAMAMRQ--TPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLR 439
D +SC RL + + Q LT SGHT + F P G L ++ D L
Sbjct: 44 DYLISCSEDRLWKMVGLPQGNVLLTGSGHTDWLSGCCFH---PSGSKLATSSGDSTIKLW 100
Query: 440 QGDTGDWIGTFLGHKGAVWGATLNXXXXXXXXXXXXXXXXVWDAVSGDELMTL-AHKHIV 616
+ G+ T GH AVW T + +WD S TL H V
Sbjct: 101 DLNKGECTLTLEGHNHAVWSCTWHSCGDFVASASLDMTSKIWDVNSERCRYTLYGHTDSV 160
Query: 617 KTVDFTQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQILSADD 796
+++F SN LLT DK L ++D + E + + GH + A + I S D
Sbjct: 161 NSIEFFPFSNILLTASADKTLSVWDARTGKCE-QSLYGHMHSVNDATFTPRGHIIASCDA 219
Query: 797 KTV-RLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIAFHSAISLDPIKSFEA 973
+ V +LWD + + S++ S + E+ GR +A SA +
Sbjct: 220 RGVTKLWDFRKLIPIVSIDVGPSSGN-------EVNFDQSGRVLAQASANGI-------- 264
Query: 974 PATINSASLHPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYAS 1153
++ D SG ++ GH +H V FS GE S
Sbjct: 265 ------------------------IHLLDLKSG-QIHKLVGHESEVHSVVFSHLGENLYS 299
Query: 1154 GSEDGTLRLW 1183
G DGT+RLW
Sbjct: 300 GGSDGTIRLW 309
>ref|NP_083436.2| sperm associated antigen 16 isoform 1 [Mus musculus]
Length = 639
Score = 76.6 bits (187), Expect = 8e-14
Identities = 81/310 (26%), Positives = 117/310 (37%), Gaps = 4/310 (1%)
Frame = +2
Query: 266 DPQLSCGIARLAAAMAMRQ--TPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLR 439
D +SC RL + + Q LT SGHT + F P G L ++ D L
Sbjct: 373 DYLISCSEDRLWKMVGLPQGNVLLTGSGHTDWLSGCCFH---PSGSKLATSSGDSTIKLW 429
Query: 440 QGDTGDWIGTFLGHKGAVWGATLNXXXXXXXXXXXXXXXXVWDAVSGDELMTL-AHKHIV 616
+ G+ T GH AVW T + +WD S TL H V
Sbjct: 430 DLNKGECTLTLEGHNHAVWSCTWHSCGDFVASASLDMTSKIWDVNSERCRYTLYGHTDSV 489
Query: 617 KTVDFTQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQILSADD 796
+++F SN LLT DK L ++D + E + + GH + A + I S D
Sbjct: 490 NSIEFFPFSNILLTASADKTLSVWDARTGKCE-QSLYGHMHSVNDATFTPRGHIIASCDA 548
Query: 797 KTV-RLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIAFHSAISLDPIKSFEA 973
+ V +LWD + + S++ S + E+ GR +A SA +
Sbjct: 549 RGVTKLWDFRKLIPIVSIDVGPSSGN-------EVNFDQSGRVLAQASANGI-------- 593
Query: 974 PATINSASLHPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYAS 1153
++ D SG ++ GH +H V FS GE S
Sbjct: 594 ------------------------IHLLDLKSG-QIHKLVGHESEVHSVVFSHLGENLYS 628
Query: 1154 GSEDGTLRLW 1183
G DGT+RLW
Sbjct: 629 GGSDGTIRLW 638
>ref|NP_543124.1| WD repeat domain 5 [Mus musculus]
Length = 334
Score = 75.1 bits (183), Expect = 2e-13
Identities = 63/248 (25%), Positives = 115/248 (46%), Gaps = 9/248 (3%)
Frame = +2
Query: 467 TFLGHKGAVWGATLNXXXXXXXXXXXXXXXXVWDAVSGDELMTLA-HKHIVKTVDFTQDS 643
T GH AV + +W A G T++ HK + V ++ DS
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99
Query: 644 NYLLTGGQDKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQILSAD-DKTVRLWDH 820
N L++ DK L+I+D++ + K + GHS+ + + + I+S D++VR+WD
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCL-KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 158
Query: 821 ATMTEVKSLNFNMS-VSSMEYIPEGEILVIT-YGRSIAFHSAISLDPIKSF--EAPATIN 988
T +K+L + VS++ + +G ++V + Y S +K+ + ++
Sbjct: 159 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 218
Query: 989 SASLHPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCV--RFS-PDGELYASGS 1159
P ++++A D L +DY+ G+ L++Y GH +C+ FS G+ SGS
Sbjct: 219 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 278
Query: 1160 EDGTLRLW 1183
ED + +W
Sbjct: 279 EDNLVYIW 286
Score = 74.3 bits (181), Expect = 4e-13
Identities = 57/209 (27%), Positives = 107/209 (51%), Gaps = 6/209 (2%)
Frame = +2
Query: 593 TLA-HKHIVKTVDFTQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSE 769
TLA H V +V F+ + +L + DKL++I+ + E K ISGH GI W S+
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD 98
Query: 770 DKQILSA-DDKTVRLWDHATMTEVKSLNFNMS-VSSMEYIPEGEILVI-TYGRSIAFHSA 940
++SA DDKT+++WD ++ +K+L + + V + P+ ++V ++ S+
Sbjct: 99 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 158
Query: 941 ISLDPIKSFEAPAT-INSASLHPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGP-IH 1114
+ +K+ A + +++ + + +V+ D +D SG+ L++ P +
Sbjct: 159 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 218
Query: 1115 CVRFSPDGELYASGSEDGTLRLWQTVVGK 1201
V+FSP+G+ + + D TL+LW GK
Sbjct: 219 FVKFSPNGKYILAATLDNTLKLWDYSKGK 247
Score = 61.2 bits (147), Expect = 3e-09
Identities = 63/290 (21%), Positives = 112/290 (38%), Gaps = 4/290 (1%)
Frame = +2
Query: 332 TCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLN 511
T SGH + D+A+S + L+SA D + +G + T GH V+ N
Sbjct: 82 TISGHKLGISDVAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 138
Query: 512 XXXXXXXXXXXXXXXXVWDAVSGDELMTL-AHKHIVKTVDFTQDSNYLLTGGQDKLLRIY 688
+WD +G L TL AH V V F +D + +++ D L RI+
Sbjct: 139 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198
Query: 689 DLNKPEAEPKEISGHSSGIKKALWCSEDKQILSAD-DKTVRLWDHATMTEVKSLNFNMSV 865
D + I + + + K IL+A D T++LWD++
Sbjct: 199 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS-------------- 244
Query: 866 SSMEYIPEGEILVITYGRSIAFHSAISLDPIKSFEAPATINSASLHPEKEFLVAGGEDFK 1045
+G+ L ++ H +F +++V+G ED
Sbjct: 245 -------KGKCL-----KTYTGHKNEKYCIFANFSVTG----------GKWIVSGSEDNL 282
Query: 1046 LYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGS--EDGTLRLWQT 1189
+Y ++ + E ++ +GH + P + AS + D T++LW++
Sbjct: 283 VYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 332
>ref|NP_083963.1| hypothetical protein LOC76646 [Mus musculus]
Length = 303
Score = 74.7 bits (182), Expect = 3e-13
Identities = 64/269 (23%), Positives = 114/269 (42%), Gaps = 7/269 (2%)
Frame = +2
Query: 374 SGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNXXXXXXXXXXXXXX 553
S +P G L++A DG + +G + GH+G V +
Sbjct: 32 SAFSPDGRTLLTASDDGCVYVWGTKSGRLLWRLAGHRGPVKSCCFSPDGRLIASSSSDHS 91
Query: 554 XXVWDAVSGDELMTL-AHKHIVKTVDFTQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISG 730
+WD L L H+ V+TV F+ DS L +GG DK ++++ + G
Sbjct: 92 IRLWDVARSKCLHVLKGHQRSVETVSFSPDSKQLASGGWDKRAIVWEVQSGR-RVHLLVG 150
Query: 731 HSSGIKKALWC-SEDKQILSADDKTVRLWDHATMTEVKSLN----FNMSVSSMEYIPEGE 895
H I+ + + + D + D TV +WD T V S + ++S + Y G
Sbjct: 151 HCDSIQSSDFSPTSDSLATGSWDSTVHIWDLRASTPVVSYHNLEGHTGNISCLCYSASGL 210
Query: 896 ILVITYGRSIAFHSAISLD-PIKSFEAPATINSASLHPEKEFLVAGGEDFKLYKYDYNSG 1072
+ ++ ++I + + P++ +NS + P++ L + G + +D +G
Sbjct: 211 LASGSWDKTICVWKPTTNNLPLQLKGHTIWVNSLAFSPDELKLASAGYSRTVKVWDCLTG 270
Query: 1073 EELESYKGHFGPIHCVRFSPDGELYASGS 1159
+ LE+ KG H F+PDG+L SG+
Sbjct: 271 KCLETLKGMLDVAHACIFTPDGKLLVSGA 299
Score = 52.8 bits (125), Expect = 1e-06
Identities = 26/73 (35%), Positives = 37/73 (50%)
Frame = +2
Query: 983 INSASLHPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSE 1162
+N ++ P+ L+ +D +Y + SG L GH GP+ FSPDG L AS S
Sbjct: 29 VNCSAFSPDGRTLLTASDDGCVYVWGTKSGRLLWRLAGHRGPVKSCCFSPDGRLIASSSS 88
Query: 1163 DGTLRLWQTVVGK 1201
D ++RLW K
Sbjct: 89 DHSIRLWDVARSK 101
Database: RefSeqMP
Posted date: Aug 2, 2006 12:58 AM
Number of letters in database: 21,768,885
Number of sequences in database: 45,328
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,686,860
Number of Sequences: 45328
Number of extensions: 1613376
Number of successful extensions: 5958
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 4184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5618
length of database: 21,768,885
effective HSP length: 109
effective length of database: 16,828,133
effective search space used: 8464550899
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)