Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0053_F06
(2870 letters)
Database: RefSeqBP
33,508 sequences; 16,112,626 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_870721.1| PREDICTED: similar to Retinol dehydrogenase 11 ... 467 e-132
Alignment gi|XP_582373.2| PREDICTED: similar to Retinol dehydrogenase 11 ... 461 e-130
Alignment gi|NP_899207.1| double substrate-specificity short chain dehydr... 416 e-116
Alignment gi|XP_592820.2| PREDICTED: similar to retinol dehydrogenase 11 ... 236 1e-61
Alignment gi|XP_582319.2| PREDICTED: similar to retinol dehydrogenase 14 ... 228 2e-59
Alignment gi|XP_584642.2| PREDICTED: similar to retinol dehydrogenase 11 ... 177 4e-44
Alignment gi|XP_584629.2| PREDICTED: similar to Retinol dehydrogenase 13,... 143 7e-34
Alignment gi|XP_591168.2| PREDICTED: similar to dehydrogenase/reductase (... 139 2e-32
Alignment gi|XP_584810.2| PREDICTED: similar to retinol dehydrogenase 13 ... 122 2e-27
Alignment gi|XP_583859.2| PREDICTED: similar to short chain dehydrogenase... 114 4e-25
>ref|XP_870721.1| PREDICTED: similar to Retinol dehydrogenase 11 (Retinal reductase 1)
(RalR1) (Prostate short-chain dehydrogenase/reductase 1)
(Androgen-regulated short-chain dehydrogenase/reductase
1) (HCV core-binding protein HCBP12) isoform 2 [Bos
taurus]
Length = 314
Score = 467 bits (1202), Expect(2) = e-132
Identities = 230/303 (75%), Positives = 260/303 (85%)
Frame = +2
Query: 233 MLSSGVCTSTVQLPGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAREIQ 412
MLSSGVCTST+QLPGKVAVVTGAN GIGKETAKELA+RGARVYLACRDVQ GE VAREIQ
Sbjct: 1 MLSSGVCTSTIQLPGKVAVVTGANAGIGKETAKELARRGARVYLACRDVQNGELVAREIQ 60
Query: 413 NMTGNQQVLVRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFETHM 592
MTGNQQVLVRKLDLADTKSIRAFAK FL + K++H++ ++ ++C + ++ G ++
Sbjct: 61 MMTGNQQVLVRKLDLADTKSIRAFAKRFLEDHKYIHLINSSPHFLICGFPGSSAGKDSAC 120
Query: 593 GVNXXXXXXXXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLRGEKFYHAGLAYCNSK 772
+ESAPSRVVNVSSLAH +GRIHFHNL+GEKFY +GLAYC+SK
Sbjct: 121 NTGYLGHFLLTHLLLEKLEESAPSRVVNVSSLAHLLGRIHFHNLQGEKFYQSGLAYCHSK 180
Query: 773 LANVLFTQELARRLKGSGVTTYSVHPGTVDSELVRHSSLLRWIWWLFSFFIKTPQQGAQT 952
LAN+LFTQELARRLKGSGVT YSVHPGTV+SELVRHS+L+RWIWW+FSFFIKTPQQGAQT
Sbjct: 181 LANILFTQELARRLKGSGVTVYSVHPGTVNSELVRHSALMRWIWWIFSFFIKTPQQGAQT 240
Query: 953 SLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVSCDLLGIPMD*RVMAVGP 1132
SLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVSCDLLGIP+D +MA GP
Sbjct: 241 SLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVSCDLLGIPVDWLMMAAGP 300
Query: 1133 REA 1141
+ +
Sbjct: 301 KRS 303
Score = 25.0 bits (53), Expect(2) = e-132
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +1
Query: 1132 KRSLQHTTQYSLPK 1173
KRSL+ TTQ++LPK
Sbjct: 301 KRSLKQTTQHTLPK 314
>ref|XP_582373.2| PREDICTED: similar to Retinol dehydrogenase 11 (Retinal reductase 1)
(RalR1) (Prostate short-chain dehydrogenase/reductase 1)
(Androgen-regulated short-chain dehydrogenase/reductase
1) (HCV core-binding protein HCBP12) isoform 1 [Bos
taurus]
Length = 308
Score = 461 bits (1186), Expect(2) = e-130
Identities = 233/303 (76%), Positives = 258/303 (85%)
Frame = +2
Query: 233 MLSSGVCTSTVQLPGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAREIQ 412
MLSSGVCTST+QLPGKVAVVTGAN GIGKETAKELA+RGARVYLACRDVQ GE VAREIQ
Sbjct: 1 MLSSGVCTSTIQLPGKVAVVTGANAGIGKETAKELARRGARVYLACRDVQNGELVAREIQ 60
Query: 413 NMTGNQQVLVRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFETHM 592
MTGNQQVLVRKLDLADTKSIRAFAK FL + K++H LIN+ G + ++ G ++
Sbjct: 61 MMTGNQQVLVRKLDLADTKSIRAFAKRFLEDHKYIH-LINSVG-----FPGSSAGKDSAC 114
Query: 593 GVNXXXXXXXXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLRGEKFYHAGLAYCNSK 772
+ESAPSRVVNVSSLAH +GRIHFHNL+GEKFY +GLAYC+SK
Sbjct: 115 NTGYLGHFLLTHLLLEKLEESAPSRVVNVSSLAHLLGRIHFHNLQGEKFYQSGLAYCHSK 174
Query: 773 LANVLFTQELARRLKGSGVTTYSVHPGTVDSELVRHSSLLRWIWWLFSFFIKTPQQGAQT 952
LAN+LFTQELARRLKGSGVT YSVHPGTV+SELVRHS+L+RWIWW+FSFFIKTPQQGAQT
Sbjct: 175 LANILFTQELARRLKGSGVTVYSVHPGTVNSELVRHSALMRWIWWIFSFFIKTPQQGAQT 234
Query: 953 SLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVSCDLLGIPMD*RVMAVGP 1132
SLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVSCDLLGIP+D +MA GP
Sbjct: 235 SLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVSCDLLGIPVDWLMMAAGP 294
Query: 1133 REA 1141
+ +
Sbjct: 295 KRS 297
Score = 25.0 bits (53), Expect(2) = e-130
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +1
Query: 1132 KRSLQHTTQYSLPK 1173
KRSL+ TTQ++LPK
Sbjct: 295 KRSLKQTTQHTLPK 308
>ref|NP_899207.1| double substrate-specificity short chain dehydrogenase/reductase 2
[Bos taurus]
Length = 316
Score = 416 bits (1069), Expect = e-116
Identities = 206/298 (69%), Positives = 241/298 (80%)
Frame = +2
Query: 206 YIAVPQIRKMLSSGVCTSTVQLPGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQK 385
Y+ P IRK + GVC + VQL GKV V+TGANTGIGKETA+ELA+RGARVY+ACRDV K
Sbjct: 16 YVIAPSIRKFFAGGVCRTDVQLFGKVVVITGANTGIGKETARELARRGARVYIACRDVLK 75
Query: 386 GESVAREIQNMTGNQQVLVRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSK 565
GES A EIQ T N QVLVRKLDL+DTKSIRAFA+GFLAEEK LHILINNAGVM+CPYSK
Sbjct: 76 GESAASEIQADTKNSQVLVRKLDLSDTKSIRAFAEGFLAEEKQLHILINNAGVMLCPYSK 135
Query: 566 TADGFETHMGVNXXXXXXXXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLRGEKFYH 745
TADGFETH+ VN KESAP+RVVN+SS+AHH+G+I FH+L+G+K+Y+
Sbjct: 136 TADGFETHLAVNHLGHFLLTHLLLGRLKESAPARVVNLSSVAHHLGKIRFHDLQGDKYYN 195
Query: 746 AGLAYCNSKLANVLFTQELARRLKGSGVTTYSVHPGTVDSELVRHSSLLRWIWWLFSFFI 925
G AYC+SKLANVLFT+ELA+RLKG+GVTTY+VHPG V S+LVRHS LL +W LFS F+
Sbjct: 196 LGFAYCHSKLANVLFTRELAKRLKGTGVTTYAVHPGIVRSKLVRHSFLLCLLWRLFSPFL 255
Query: 926 KTPQQGAQTSLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVSCDLLGI 1099
KT +GAQTSL+CAL EGLE LSG +FSDC WVS +ARN A RLW+VSC+LLGI
Sbjct: 256 KTTWEGAQTSLHCALAEGLEPLSGKYFSDCKKTWVSPRARNNKTAERLWNVSCELLGI 313
>ref|XP_592820.2| PREDICTED: similar to retinol dehydrogenase 11 (predicted) [Bos
taurus]
Length = 377
Score = 236 bits (601), Expect = 1e-61
Identities = 139/291 (47%), Positives = 179/291 (61%), Gaps = 8/291 (2%)
Frame = +2
Query: 251 CTSTVQLPGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAREIQNMTGNQ 430
C L G+ AVVTGAN+GIGK TA ELA+RGARV LACR ++GE+ A +++ +GN
Sbjct: 28 CRGLASLRGRTAVVTGANSGIGKMTALELARRGARVVLACRSRERGEAAAFDLRQESGNN 87
Query: 431 QVLVRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFETHMGVNXXX 610
+V+ LDLA S+RAFA FL+ E L ILI+NAG+ C +T + F + VN
Sbjct: 88 EVIFMALDLASLASVRAFATAFLSSEPRLDILIHNAGISSC--GRTREPFNLLLRVNHIG 145
Query: 611 XXXXXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLRGE--KFYHAGLAYCNSKLANV 784
K SAPSRVV VSS AH GR+ F L + AY NSKLANV
Sbjct: 146 PFLLTHLLLPRLKTSAPSRVVVVSSAAHRRGRLDFTRLDHPVVGWQQELRAYANSKLANV 205
Query: 785 LFTQELARRLKGSGVTTYSVHPGTVDSEL-VRH-----SSLLRWIWWLFSFFIKTPQQGA 946
LF +ELA +L+G+GVT Y+ HPG V+SEL +RH LLR + WL ++ P+ GA
Sbjct: 206 LFARELATQLEGTGVTCYAAHPGPVNSELFLRHVPGWLRPLLRPLAWL---VLRAPRGGA 262
Query: 947 QTSLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVSCDLLGI 1099
QT LYCAL EG+E LSG +F++CHV V AR++ A RLW+ S L G+
Sbjct: 263 QTPLYCALQEGIEPLSGRYFANCHVEEVPPAARDDRAAHRLWEASRKLAGL 313
>ref|XP_582319.2| PREDICTED: similar to retinol dehydrogenase 14 (all-trans and 9-cis)
[Bos taurus]
Length = 420
Score = 228 bits (581), Expect = 2e-59
Identities = 124/292 (42%), Positives = 176/292 (60%), Gaps = 17/292 (5%)
Frame = +2
Query: 275 GKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAREIQ-------------N 415
GK ++TGAN+G+G+ TA EL + GARV + CRD ++ E A +++ N
Sbjct: 127 GKTVLITGANSGLGRATAAELLRLGARVIMGCRDRERAEEAAGQLRREVCPAGGPDSGPN 186
Query: 416 MTGNQQVLVRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFETHMG 595
G +++V++LDLA S+R+F + L EE L +LINNAGV CPY KT DGFE G
Sbjct: 187 SGGAGELVVKELDLASLSSVRSFCQEMLQEEPRLDVLINNAGVFQCPYMKTEDGFEMQFG 246
Query: 596 VNXXXXXXXXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLRGEKFYHAGLAYCNSKL 775
VN K SAPSR+V VSS + G I+F +L E+ Y+ Y SKL
Sbjct: 247 VNHLGHFLLTNLLLGLLKSSAPSRIVVVSSKLYKYGDINFEDLNSEQSYNKSFCYSRSKL 306
Query: 776 ANVLFTQELARRLKGSGVTTYSVHPGTVDSELVRHSSLLRWIWWLFSF----FIKTPQQG 943
AN+LFT+ELARRL+G+ VT +HPG V + L RH + + LF+ F KTP++G
Sbjct: 307 ANILFTRELARRLEGTSVTVNVLHPGIVRTNLGRHIHIPLLVRPLFNLVSWAFFKTPEEG 366
Query: 944 AQTSLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVSCDLLGI 1099
AQT++Y A + +E +SG +F DC + +A +E+VAR+LWD+S ++GI
Sbjct: 367 AQTAVYLASSPEVEGVSGRYFGDCKEEELLPKAMDESVARKLWDISEVMVGI 418
>ref|XP_584642.2| PREDICTED: similar to retinol dehydrogenase 11 (predicted) [Bos
taurus]
Length = 330
Score = 177 bits (449), Expect = 4e-44
Identities = 109/283 (38%), Positives = 160/283 (56%), Gaps = 3/283 (1%)
Frame = +2
Query: 260 TVQLPGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAREIQNMTGNQQVL 439
+ L GK AVVTGAN+GIGK ++ELA RGARV LACR ++G+ EIQ + + ++L
Sbjct: 44 STDLTGKTAVVTGANSGIGKAVSQELAHRGARVILACRSRERGQQALAEIQATSKSNRLL 103
Query: 440 VRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFETHMGVNXXXXXX 619
+ ++DL+ SIR+FA+ L E +H+L+NNA V P + T +G + N
Sbjct: 104 LGEVDLSSMASIRSFAQRLLQECPEIHLLVNNAAVCGFPTTLTPEGLDLTFATNYTGPFL 163
Query: 620 XXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLRGE-KFYHAGLAYCNSKLANVLFTQ 796
+ + +RVVNVSS G I +L G + Y SKL FT
Sbjct: 164 LTNLLQGALQRAGSARVVNVSSFRQSHGYIDEDHLIGAGRPLTFNQNYDCSKLLLASFTG 223
Query: 797 ELARRLKGSGVTTYSVHPGTVDSELVRHSS-LLRWIWWLFSFFIKTPQQGAQTSLYCALT 973
+LA+RL+G+GVT SV PG V +++++H S R+++WL SFF K +QGA LY +L
Sbjct: 224 KLAQRLQGTGVTVNSVDPGVVYTKIMKHFSWSYRFLFWLLSFFFKDSKQGAVPVLYLSLA 283
Query: 974 EGLEVLSGNHF-SDCHVAWVSAQARNETVARRLWDVSCDLLGI 1099
+ L+ +SG HF S C + A++ VA+ LW+ S L +
Sbjct: 284 KELDGISGKHFSSSCVITLPPEAAQDPHVAQSLWNTSVRLTNL 326
>ref|XP_584629.2| PREDICTED: similar to Retinol dehydrogenase 13, partial [Bos
taurus]
Length = 148
Score = 143 bits (361), Expect = 7e-34
Identities = 70/126 (55%), Positives = 88/126 (69%)
Frame = +2
Query: 224 IRKMLSSGVCTSTVQLPGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAR 403
++ ++ G C S +PGK +VTGANTGIGK+TA ELAKRG + LACRD++K E+ A+
Sbjct: 21 LKDFVAGGACPSKATIPGKTVIVTGANTGIGKQTALELAKRGGNIILACRDMEKCEAAAK 80
Query: 404 EIQNMTGNQQVLVRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFE 583
EI+ T N +V R LDLA KSIR FA EE+H+HILINNA VM CP+ T DGFE
Sbjct: 81 EIRGETLNHRVNARHLDLASLKSIREFAAKVTEEEEHVHILINNAAVMRCPHWTTEDGFE 140
Query: 584 THMGVN 601
+GVN
Sbjct: 141 MQLGVN 146
>ref|XP_591168.2| PREDICTED: similar to dehydrogenase/reductase (SDR family) X-linked
[Bos taurus]
Length = 251
Score = 139 bits (349), Expect = 2e-32
Identities = 90/228 (39%), Positives = 121/228 (53%), Gaps = 12/228 (5%)
Frame = +2
Query: 452 DLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFETHMGVNXXXXXXXXXX 631
DLA +SIR F + F ++ LH+L+NNAGVMM P T DGFE H GVN
Sbjct: 11 DLASMRSIREFVQTFKMKKLPLHVLVNNAGVMMVPQRTTEDGFEEHFGVNYLGHFLLTNL 70
Query: 632 XXXXXKES-AP---SRVVNVSSLAHHMGRIHFHNLRGEKFYHAGLAYCNSKLANVLFTQE 799
+ES AP +RVV VSS H++G ++ +L+ +Y A AY SKLA VLFT
Sbjct: 71 LLDTLQESGAPGHSARVVTVSSATHYVGELNLDDLQSSTYYSAHAAYAQSKLALVLFTYH 130
Query: 800 LARRLKGSG--VTTYSVHPGTVDSELVRH----SSLLRWI--WWLFSFFIKTPQQGAQTS 955
L L G VT PG VD++L R+ + L++ + WW+F KTP +GA TS
Sbjct: 131 LQALLTAQGMPVTASVADPGVVDTDLYRYVFWGTRLVKKLLGWWVF----KTPDEGAWTS 186
Query: 956 LYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVSCDLLGI 1099
+Y A+T LE L G + + + + R+LW SC L GI
Sbjct: 187 VYAAVTPALEGLGGRYLYNEKETRSLEATYDPELQRQLWARSCQLTGI 234
>ref|XP_584810.2| PREDICTED: similar to retinol dehydrogenase 13 (all-trans and 9-cis)
[Bos taurus]
Length = 223
Score = 122 bits (305), Expect = 2e-27
Identities = 73/163 (44%), Positives = 100/163 (61%), Gaps = 10/163 (6%)
Frame = +2
Query: 647 KESAPSRVVNVSSLAHHMGRIHFHNLRGEKF-YHAGLAYCNSKLANVLFTQELARRLKGS 823
K SAPSR++NVSSLAH G I F +L EK Y AYC SKLA V+ T+EL+RRL+G+
Sbjct: 50 KASAPSRIINVSSLAHVAGHIDFEDLNWEKRKYDTKAAYCQSKLAVVVSTKELSRRLQGT 109
Query: 824 GVTTYSVHPGTVDSELVRHSSL---------LRWIWWLFSFFIKTPQQGAQTSLYCALTE 976
GVT ++HPG +EL RH+ + L I+WL +K+P+ AQ S+Y A+ E
Sbjct: 110 GVTVNALHPGVARTELGRHTGMHSSAFSSFTLGPIFWL---LVKSPELAAQPSVYLAVAE 166
Query: 977 GLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVSCDLLGIPM 1105
LE +SG +F + +A +E VA+RLW S L+G+ M
Sbjct: 167 ELEGVSGKYFDVLKEKPPAPEAEDEEVAKRLWAESVRLVGLEM 209
>ref|XP_583859.2| PREDICTED: similar to short chain dehydrogenase/reductase [Bos
taurus]
Length = 317
Score = 114 bits (285), Expect = 4e-25
Identities = 82/252 (32%), Positives = 123/252 (48%), Gaps = 2/252 (0%)
Frame = +2
Query: 263 VQLPGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAREIQNMTGNQQVLV 442
VQ+PG+ +VTG N+GIGK TA E+AKRG V+L CRD + E EI +GNQ + +
Sbjct: 36 VQVPGRAFMVTGGNSGIGKATAMEIAKRGGTVHLVCRDHSRAEGAKAEIIRESGNQNIFL 95
Query: 443 RKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFETHMGVNXXXXXXX 622
+DL+ KS+ F + F +E L++LINNAG M+ T DG E + N
Sbjct: 96 HIVDLSLPKSVWKFVENF-KQEHTLNVLINNAGCMVNKRELTEDGLEKNFATNTLGVYVL 154
Query: 623 XXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLRGEKFYHAG-LAYCNSKLANVLFTQE 799
++ RV+ VSS + +++ + + E+ G + Y +K V+ T+
Sbjct: 155 TTALIPVLEKEHDPRVITVSSGGMLVQKLNTDDPQSERTAFDGTMVYAQNKRQQVVLTER 214
Query: 800 LARRLKGSGVTTYSVHPGTVDSELVRHSSLLRWIWWLFSFFIKTPQQGAQTSLYCALTEG 979
AR + +HPG VD+ VR S + +++ QGA T L+ AL
Sbjct: 215 WAR--AHPAIHFSCMHPGWVDTPGVRLS--MPGFHARLGARLRSEAQGADTVLWLALAPA 270
Query: 980 LEVL-SGNHFSD 1012
SG F D
Sbjct: 271 ATAQPSGCFFQD 282
Database: RefSeqBP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 16,112,626
Number of sequences in database: 33,508
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,419,687
Number of Sequences: 33508
Number of extensions: 2370614
Number of successful extensions: 5952
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 5033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5909
length of database: 16,112,626
effective HSP length: 111
effective length of database: 12,393,238
effective search space used: 10472286110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0053_F06
(2870 letters)
Database: RefSeqCP
33,732 sequences; 19,266,565 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854354.1| PREDICTED: similar to Retinol dehydrogenase 11 ... 510 e-144
Alignment gi|XP_547866.2| PREDICTED: similar to retinol dehydrogenase 12 ... 415 e-115
Alignment gi|XP_854127.1| PREDICTED: similar to Retinol dehydrogenase 13 ... 254 4e-67
Alignment gi|XP_548293.2| PREDICTED: similar to retinol dehydrogenase 11 ... 229 9e-60
Alignment gi|XP_540096.2| PREDICTED: similar to retinol dehydrogenase 14 ... 226 1e-58
Alignment gi|XP_533000.2| PREDICTED: similar to Retinol dehydrogenase 12 ... 184 3e-46
Alignment gi|XP_852222.1| PREDICTED: similar to dehydrogenase/reductase (... 177 7e-44
Alignment gi|XP_857582.1| PREDICTED: similar to retinol dehydrogenase 14 ... 172 2e-42
Alignment gi|XP_852623.1| PREDICTED: similar to WW domain-containing oxid... 143 1e-33
Alignment gi|XP_857503.1| PREDICTED: similar to retinol dehydrogenase 14 ... 63 2e-09
>ref|XP_854354.1| PREDICTED: similar to Retinol dehydrogenase 11 (Retinal reductase 1)
(RalR1) (Prostate short-chain dehydrogenase/reductase 1)
(Androgen-regulated short-chain dehydrogenase/reductase
1) (HCV core-binding protein HCBP12) [Canis familiaris]
Length = 337
Score = 510 bits (1314), Expect = e-144
Identities = 248/298 (83%), Positives = 270/298 (90%)
Frame = +2
Query: 215 VPQIRKMLSSGVCTSTVQLPGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGES 394
V ++ K+LS GVCTSTVQLPGKVAVVTGANTGIGKETAKELA+RGARVYLACRDV KGE
Sbjct: 40 VDRLMKILSRGVCTSTVQLPGKVAVVTGANTGIGKETAKELAQRGARVYLACRDVLKGEL 99
Query: 395 VAREIQNMTGNQQVLVRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTAD 574
VAREIQ MTGN+QVLVRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPY+KT D
Sbjct: 100 VAREIQTMTGNKQVLVRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYTKTVD 159
Query: 575 GFETHMGVNXXXXXXXXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLRGEKFYHAGL 754
GFE HMGVN KESAPSR+VNVSSLAHH+GRIHFH+L+GEKFY++GL
Sbjct: 160 GFEMHMGVNHLGHFLLTHLLLEKLKESAPSRIVNVSSLAHHLGRIHFHDLQGEKFYNSGL 219
Query: 755 AYCNSKLANVLFTQELARRLKGSGVTTYSVHPGTVDSELVRHSSLLRWIWWLFSFFIKTP 934
AYC+SKLAN+LFTQELARRLKGSG+T YSVHPGTV SELVRHS ++W+WWLFSFFIKTP
Sbjct: 220 AYCHSKLANILFTQELARRLKGSGITAYSVHPGTVKSELVRHSPFMKWMWWLFSFFIKTP 279
Query: 935 QQGAQTSLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVSCDLLGIPMD 1108
QQGAQTSLYCA+TEGLEVLSG+HFSDC VAWVSAQARNET+ARRLWDVSCDLLGIP+D
Sbjct: 280 QQGAQTSLYCAITEGLEVLSGHHFSDCSVAWVSAQARNETIARRLWDVSCDLLGIPVD 337
>ref|XP_547866.2| PREDICTED: similar to retinol dehydrogenase 12 (all-trans and 9-cis)
[Canis familiaris]
Length = 303
Score = 415 bits (1067), Expect = e-115
Identities = 205/294 (69%), Positives = 240/294 (81%)
Frame = +2
Query: 227 RKMLSSGVCTSTVQLPGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVARE 406
RK + GVC S VQLPGKV V+TGANTGIGKETA+ELA+RGARVY+ACRDV KGES A E
Sbjct: 10 RKFFAGGVCRSNVQLPGKVVVITGANTGIGKETARELARRGARVYIACRDVLKGESAASE 69
Query: 407 IQNMTGNQQVLVRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFET 586
I+ T N QVLVRKLDL+DTKSIRAFA+GFLAEEK LHILINNAGVMMCPYSKTADGFET
Sbjct: 70 IRADTKNSQVLVRKLDLSDTKSIRAFAEGFLAEEKQLHILINNAGVMMCPYSKTADGFET 129
Query: 587 HMGVNXXXXXXXXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLRGEKFYHAGLAYCN 766
H+GVN KES P+RVVN+SS+AHH+G+IHFH+L+GEK Y G AYC+
Sbjct: 130 HLGVNHLGHFLLTHLLLERLKESTPARVVNLSSVAHHIGKIHFHDLQGEKRYSRGFAYCH 189
Query: 767 SKLANVLFTQELARRLKGSGVTTYSVHPGTVDSELVRHSSLLRWIWWLFSFFIKTPQQGA 946
SKLAN+LFT+ELA+RL+G+GVTTY+VHPG V SELVRHS LL +W +FS F+K+ ++GA
Sbjct: 190 SKLANMLFTRELAKRLQGTGVTTYAVHPGVVSSELVRHSFLLCLLWRIFSPFVKSAREGA 249
Query: 947 QTSLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVSCDLLGIPMD 1108
QTSL+CAL EGLE LSG +FSDC AWVS +AR+ A RLW+VSC+LLGI D
Sbjct: 250 QTSLHCALAEGLEPLSGKYFSDCKRAWVSPRARDNKTAERLWNVSCELLGIQWD 303
>ref|XP_854127.1| PREDICTED: similar to Retinol dehydrogenase 13 [Canis familiaris]
Length = 334
Score = 254 bits (648), Expect = 4e-67
Identities = 141/304 (46%), Positives = 186/304 (61%), Gaps = 10/304 (3%)
Frame = +2
Query: 224 IRKMLSSGVCTSTVQLPGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAR 403
+R ++ G C S +PGK +VTGANTGIGK+TA ELA+RG + LACRD++K E+ A+
Sbjct: 21 LRDYIAGGACPSKATIPGKTVIVTGANTGIGKQTALELARRGGNIILACRDMEKCEAAAK 80
Query: 404 EIQNMTGNQQVLVRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFE 583
EI+ T N +V LDLA KSIR FA + EE+ +HIL+NNA VM CP+ T DGFE
Sbjct: 81 EIRGETLNHRVSAWHLDLASLKSIREFAAKIIEEEEQVHILVNNAAVMRCPHWTTKDGFE 140
Query: 584 THMGVNXXXXXXXXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLRGEK-FYHAGLAY 760
GVN K SAPSR++N+SSLAH G I F +L EK Y AY
Sbjct: 141 MQFGVNHLGHFLLTNLLLDKLKASAPSRIINLSSLAHVAGHIDFDDLNWEKRKYDTKAAY 200
Query: 761 CNSKLANVLFTQELARRLKGSGVTTYSVHPGTVDSELVRHSSL---------LRWIWWLF 913
C SKLA +LFT+EL+RRL+G+GVT ++HPG +EL RH+ + L I+WL
Sbjct: 201 CQSKLAVILFTKELSRRLQGTGVTVNALHPGVARTELGRHTGMHSSAFSSFTLGPIFWL- 259
Query: 914 SFFIKTPQQGAQTSLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVSCDLL 1093
+K+PQ AQ S Y A+ E LE +SG +F + +A +E VA+RLW S L+
Sbjct: 260 --LVKSPQLAAQPSTYLAVAEELEGVSGKYFDGLKEKAPAPEAEDEEVAQRLWAESARLV 317
Query: 1094 GIPM 1105
G+ M
Sbjct: 318 GLEM 321
>ref|XP_548293.2| PREDICTED: similar to retinol dehydrogenase 11 (predicted) [Canis
familiaris]
Length = 377
Score = 229 bits (585), Expect = 9e-60
Identities = 148/337 (43%), Positives = 194/337 (57%), Gaps = 9/337 (2%)
Frame = +2
Query: 251 CTSTVQLPGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAREIQNMTGNQ 430
C L G+ AVVTGAN+GIGK TA ELA+RGARV LACR ++GE+ A +++ +GN
Sbjct: 28 CGGIASLRGRTAVVTGANSGIGKMTALELARRGARVVLACRSRERGEAAAFDLRQESGNN 87
Query: 431 QVLVRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFETHMGVNXXX 610
+V+ LDLA S+RAFA FL+ E L ILI+NAG+ C +T F + VN
Sbjct: 88 EVIFMALDLASLASVRAFATAFLSSEPRLDILIHNAGISSC--GRTHKPFNLLLRVNHIG 145
Query: 611 XXXXXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNL-RGEKFYHAGL-AYCNSKLANV 784
K APSRVV VSS AH GR+ F L R + L AY +SKLANV
Sbjct: 146 PFLLTHLLLPRLKTCAPSRVVVVSSAAHRRGRLDFTRLDRPVVGWQQELRAYADSKLANV 205
Query: 785 LFTQELARRLKGSGVTTYSVHPGTVDSEL-VRH-----SSLLRWIWWLFSFFIKTPQQGA 946
LF +ELA +L+G+GVT Y+ HPG V+SEL +RH LLR + WL ++ P+ GA
Sbjct: 206 LFARELATQLEGTGVTCYAAHPGPVNSELFLRHVPGWLCPLLRPLAWL---MLRAPRGGA 262
Query: 947 QTSLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVSCDLLGIPMD*RVMAV 1126
QT LYCAL EG+E LSG +F++CHV V AR++ A +LW+ S L G+
Sbjct: 263 QTPLYCALQEGIEPLSGRYFANCHVEEVPPAARDDRAAHQLWEASKRLAGL--------- 313
Query: 1127 GP-REACSTLLSTPCQNDSPSGWPKP*AQRLQTFHPC 1234
GP ++A + S P +PS P + PC
Sbjct: 314 GPGKDAEADEDSQPEDPRTPSSPSSPHPEEPTVSEPC 350
>ref|XP_540096.2| PREDICTED: similar to retinol dehydrogenase 14 (all-trans and 9-cis)
isoform 1 [Canis familiaris]
Length = 336
Score = 226 bits (576), Expect = 1e-58
Identities = 126/292 (43%), Positives = 175/292 (59%), Gaps = 17/292 (5%)
Frame = +2
Query: 275 GKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVA----REIQNMTGNQ---- 430
GK ++TGAN+G+G+ TA L + GARV + CRD + E A RE++ G +
Sbjct: 43 GKTVLITGANSGLGRATAAALLRLGARVIMGCRDRARAEEAAGQLRRELRQAGGREPGSD 102
Query: 431 -----QVLVRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFETHMG 595
+++VR+LDLA +S+RAF + L EE L +LINNAG+ CPY KT DGFE G
Sbjct: 103 VGAAGELVVRELDLASLRSVRAFCQEVLQEEPRLDVLINNAGIFQCPYMKTEDGFEMQFG 162
Query: 596 VNXXXXXXXXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLRGEKFYHAGLAYCNSKL 775
VN K SAPSR+V VSS + G I+F +L E+ Y+ Y SKL
Sbjct: 163 VNHLGHFLLTNLLLGLLKNSAPSRIVVVSSKLYKYGDINFEDLNSEQSYNKSFCYSRSKL 222
Query: 776 ANVLFTQELARRLKGSGVTTYSVHPGTVDSELVRHSSLLRWIWWLFSF----FIKTPQQG 943
AN+LFT+ELARRL+G+ VT +HPG V + L RH + + LF+ F KTP +G
Sbjct: 223 ANILFTRELARRLEGTNVTVNVLHPGIVRTNLGRHIHIPLLVRPLFNLVSWAFFKTPVEG 282
Query: 944 AQTSLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVSCDLLGI 1099
AQTS+Y A + +E +SG +F DC + +A +E+VAR+LWD+S ++GI
Sbjct: 283 AQTSVYLASSPEVEGVSGKYFGDCKEEELLPKAMDESVARKLWDISEVMVGI 334
>ref|XP_533000.2| PREDICTED: similar to Retinol dehydrogenase 12 [Canis familiaris]
Length = 596
Score = 184 bits (468), Expect = 3e-46
Identities = 111/283 (39%), Positives = 164/283 (57%), Gaps = 3/283 (1%)
Frame = +2
Query: 260 TVQLPGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAREIQNMTGNQQVL 439
+ L GK AVVTGAN+GIGK +ELA+RGARV LACR+ ++G+ EIQ + +L
Sbjct: 310 STDLTGKTAVVTGANSGIGKAVCQELARRGARVILACRNWERGQKALAEIQVASKGTCLL 369
Query: 440 VRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFETHMGVNXXXXXX 619
+ ++DL+ SIR+FA+ L E +H+L+NNA + P + T +G + N
Sbjct: 370 LGQVDLSSMASIRSFARWLLQEYPEIHLLVNNAAISGFPKTLTPEGLDLTFATNYVGPFL 429
Query: 620 XXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLRGE-KFYHAGLAYCNSKLANVLFTQ 796
+ + +RVVNVSS H G + +L G K + +Y SKL FT
Sbjct: 430 LTNLLQGALQRAGSARVVNVSSFRHAHGYVDEKHLTGAGKPLNLIQSYDCSKLLLTSFTG 489
Query: 797 ELARRLKGSGVTTYSVHPGTVDSELVR-HSSLLRWIWWLFSFFIKTPQQGAQTSLYCALT 973
ELARRL+G+GVT SV PG V +E+++ + L R+++WLFSFF K +QGA LY +L
Sbjct: 490 ELARRLQGTGVTVNSVDPGVVYTEIMKPYPWLYRFLFWLFSFFCKDVKQGAIPVLYLSLA 549
Query: 974 EGLEVLSGNHF-SDCHVAWVSAQARNETVARRLWDVSCDLLGI 1099
+ L+ +SG +F S C + + A++ VA+ LW+ S L +
Sbjct: 550 KELDGVSGKYFSSSCMITLPTEAAQDPQVAQSLWNASVQLTNL 592
>ref|XP_852222.1| PREDICTED: similar to dehydrogenase/reductase (SDR family) X-linked
[Canis familiaris]
Length = 387
Score = 177 bits (448), Expect = 7e-44
Identities = 117/288 (40%), Positives = 152/288 (52%), Gaps = 12/288 (4%)
Frame = +2
Query: 272 PGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAREIQNMTGNQQVLVRKL 451
P +VA+VTG GIG TAK LA+ G V LA + V R+IQ T N +V
Sbjct: 94 PERVAIVTGGTDGIGYSTAKHLARLGMHVILAGNNDSSAPDVVRKIQEETLNDKVEFLYC 153
Query: 452 DLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFETHMGVNXXXXXXXXXX 631
DLA +SIR F + F ++ LH+L+NNAGVMM P T DGFE H G+N
Sbjct: 154 DLASLRSIRQFVQKFKKKKIPLHVLVNNAGVMMVPERTTEDGFEEHFGLNYLGHFLLTNL 213
Query: 632 XXXXXKES-AP---SRVVNVSSLAHHMGRIHFHNLRGEKFYHAGLAYCNSKLANVLFTQE 799
KES AP +RVV VSS H++G + +L+G + Y AY SKLA VLFT
Sbjct: 214 LLDTLKESGAPGRCARVVTVSSATHYIGELDMDDLQGSRCYSPHAAYAQSKLALVLFTYH 273
Query: 800 LARRL--KGSGVTTYSVHPGTVDSELVRH----SSLLRWI--WWLFSFFIKTPQQGAQTS 955
L R L +GS VT V PG V++ L RH + L++ + WW F KTP +GA TS
Sbjct: 274 LQRLLAAQGSPVTANVVDPGVVNTNLYRHVFWGTRLIKKLFGWW----FFKTPDEGAWTS 329
Query: 956 LYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVSCDLLGI 1099
+Y A+T LE L G + + A + + LW SC + GI
Sbjct: 330 VYAAVTPDLEGLGGRYLYNEKETKSLAVTYDLDLQTELWARSCQMTGI 377
>ref|XP_857582.1| PREDICTED: similar to retinol dehydrogenase 14 (all-trans and 9-cis)
isoform 4 [Canis familiaris]
Length = 307
Score = 172 bits (436), Expect = 2e-42
Identities = 108/292 (36%), Positives = 155/292 (53%), Gaps = 17/292 (5%)
Frame = +2
Query: 275 GKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVA----REIQNMTGNQ---- 430
GK ++TGAN+G+G+ TA L + GARV + CRD + E A RE++ G +
Sbjct: 43 GKTVLITGANSGLGRATAAALLRLGARVIMGCRDRARAEEAAGQLRRELRQAGGREPGSD 102
Query: 431 -----QVLVRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFETHMG 595
+++VR+LDLA +S+RAF + L G
Sbjct: 103 VGAAGELVVRELDLASLRSVRAFCQEVL-----------------------------QFG 133
Query: 596 VNXXXXXXXXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLRGEKFYHAGLAYCNSKL 775
VN K SAPSR+V VSS + G I+F +L E+ Y+ Y SKL
Sbjct: 134 VNHLGHFLLTNLLLGLLKNSAPSRIVVVSSKLYKYGDINFEDLNSEQSYNKSFCYSRSKL 193
Query: 776 ANVLFTQELARRLKGSGVTTYSVHPGTVDSELVRHSSLLRWIWWLFSF----FIKTPQQG 943
AN+LFT+ELARRL+G+ VT +HPG V + L RH + + LF+ F KTP +G
Sbjct: 194 ANILFTRELARRLEGTNVTVNVLHPGIVRTNLGRHIHIPLLVRPLFNLVSWAFFKTPVEG 253
Query: 944 AQTSLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVSCDLLGI 1099
AQTS+Y A + +E +SG +F DC + +A +E+VAR+LWD+S ++GI
Sbjct: 254 AQTSVYLASSPEVEGVSGKYFGDCKEEELLPKAMDESVARKLWDISEVMVGI 305
>ref|XP_852623.1| PREDICTED: similar to WW domain-containing oxidoreductase isoform 1
[Canis familiaris]
Length = 383
Score = 143 bits (360), Expect = 1e-33
Identities = 93/243 (38%), Positives = 127/243 (52%), Gaps = 8/243 (3%)
Frame = +2
Query: 275 GKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAREIQNMTGNQQVLVRKLD 454
GKV VVTGAN+GIG ETAK A GA V LACR++ + +I +V LD
Sbjct: 124 GKVVVVTGANSGIGFETAKSFALHGAHVILACRNMTRANEAVSQILGEWHKAKVEAMTLD 183
Query: 455 LADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFETHMGVNXXXXXXXXXXX 634
LA +S++ FA+ F A+ LH+L+ NA P+S T DG ET VN
Sbjct: 184 LALLRSVQHFAQAFKAKNVSLHVLVCNAAAFALPWSLTKDGLETTFQVNHLGHFYLVQLL 243
Query: 635 XXXXKESAPSRVVNVSSLAHHM-------GRIHFHNLRGEKF-YHAGLAYCNSKLANVLF 790
SAP+RVV VSS +H G++ F L K Y A LAY SKL N+LF
Sbjct: 244 QDVLCRSAPARVVVVSSESHRFTDINDSSGKLDFSRLSPSKSDYWAMLAYNRSKLCNILF 303
Query: 791 TQELARRLKGSGVTTYSVHPGTVDSELVRHSSLLRWIWWLFSFFIKTPQQGAQTSLYCAL 970
+ EL RRL GVT+ +VHPG + +SS+ R WW+++ + ++ L +
Sbjct: 304 SNELHRRLSPRGVTSNAVHPGN-----MMYSSIHR-NWWVYTLLFTLARPFTKSMLLVSC 357
Query: 971 TEG 979
++G
Sbjct: 358 SDG 360
>ref|XP_857503.1| PREDICTED: similar to retinol dehydrogenase 14 (all-trans and
9-cis) isoform 3 [Canis familiaris]
Length = 153
Score = 62.8 bits (151), Expect = 2e-09
Identities = 35/92 (38%), Positives = 53/92 (57%), Gaps = 13/92 (14%)
Frame = +2
Query: 275 GKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVA----REIQNMTGNQ---- 430
GK ++TGAN+G+G+ TA L + GARV + CRD + E A RE++ G +
Sbjct: 43 GKTVLITGANSGLGRATAAALLRLGARVIMGCRDRARAEEAAGQLRRELRQAGGREPGSD 102
Query: 431 -----QVLVRKLDLADTKSIRAFAKGFLAEEK 511
+++VR+LDLA +S+RAF + L K
Sbjct: 103 VGAAGELVVRELDLASLRSVRAFCQEVLQGRK 134
Database: RefSeqCP
Posted date: Aug 1, 2006 9:25 PM
Number of letters in database: 19,266,565
Number of sequences in database: 33,732
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,613,909
Number of Sequences: 33732
Number of extensions: 2765091
Number of successful extensions: 6938
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 5794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6893
length of database: 19,266,565
effective HSP length: 113
effective length of database: 15,454,849
effective search space used: 13028437707
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0053_F06
(2870 letters)
Database: RefSeqHP
39,411 sequences; 17,774,539 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057110.2| androgen-regulated short-chain dehydrogenase/re... 533 e-151
Alignment gi|NP_689656.1| retinol dehydrogenase 12 (all-trans and 9-cis) ... 418 e-116
Alignment gi|NP_065956.1| retinol dehydrogenase 14 (all-trans and 9-cis) ... 228 2e-59
Alignment gi|NP_653284.1| hypothetical protein LOC147015 [Homo sapiens] 201 3e-51
Alignment gi|NP_612421.1| retinol dehydrogenase 13 (all-trans and 9-cis) ... 188 2e-47
Alignment gi|NP_057457.1| WW domain-containing oxidoreductase isoform 1 [... 177 6e-44
Alignment gi|NP_660160.1| dehydrogenase/reductase (SDR family) X-linked [... 171 3e-42
Alignment gi|XP_371503.3| PREDICTED: similar to short-chain dehydrogenase... 91 4e-18
Alignment gi|XP_947127.1| PREDICTED: similar to short-chain dehydrogenase... 91 4e-18
Alignment gi|NP_078981.1| hypothetical protein FLJ13639 isoform 2 [Homo s... 70 1e-11
>ref|NP_057110.2| androgen-regulated short-chain dehydrogenase/reductase 1 [Homo
sapiens]
Length = 318
Score = 533 bits (1372), Expect = e-151
Identities = 257/301 (85%), Positives = 277/301 (92%)
Frame = +2
Query: 206 YIAVPQIRKMLSSGVCTSTVQLPGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQK 385
Y+A PQIRKMLSSGVCTSTVQLPGKV VVTGANTGIGKETAKELA+RGARVYLACRDV+K
Sbjct: 18 YMAAPQIRKMLSSGVCTSTVQLPGKVVVVTGANTGIGKETAKELAQRGARVYLACRDVEK 77
Query: 386 GESVAREIQNMTGNQQVLVRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSK 565
GE VA+EIQ TGNQQVLVRKLDL+DTKSIRAFAKGFLAEEKHLH+LINNAGVMMCPYSK
Sbjct: 78 GELVAKEIQTTTGNQQVLVRKLDLSDTKSIRAFAKGFLAEEKHLHVLINNAGVMMCPYSK 137
Query: 566 TADGFETHMGVNXXXXXXXXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLRGEKFYH 745
TADGFE H+GVN KESAPSR+VNVSSLAHH+GRIHFHNL+GEKFY+
Sbjct: 138 TADGFEMHIGVNHLGHFLLTHLLLEKLKESAPSRIVNVSSLAHHLGRIHFHNLQGEKFYN 197
Query: 746 AGLAYCNSKLANVLFTQELARRLKGSGVTTYSVHPGTVDSELVRHSSLLRWIWWLFSFFI 925
AGLAYC+SKLAN+LFTQELARRLKGSGVTTYSVHPGTV SELVRHSS +RW+WWLFSFFI
Sbjct: 198 AGLAYCHSKLANILFTQELARRLKGSGVTTYSVHPGTVQSELVRHSSFMRWMWWLFSFFI 257
Query: 926 KTPQQGAQTSLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVSCDLLGIPM 1105
KTPQQGAQTSL+CALTEGLE+LSGNHFSDCHVAWVS QARNET+ARRLWDVSCDLLG+P+
Sbjct: 258 KTPQQGAQTSLHCALTEGLEILSGNHFSDCHVAWVSVQARNETIARRLWDVSCDLLGLPI 317
Query: 1106 D 1108
D
Sbjct: 318 D 318
>ref|NP_689656.1| retinol dehydrogenase 12 (all-trans and 9-cis) [Homo sapiens]
Length = 316
Score = 418 bits (1074), Expect = e-116
Identities = 209/298 (70%), Positives = 240/298 (80%)
Frame = +2
Query: 206 YIAVPQIRKMLSSGVCTSTVQLPGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQK 385
Y+ P IRK + GVC + VQLPGKV V+TGANTGIGKETA+ELA RGARVY+ACRDV K
Sbjct: 16 YMVAPSIRKFFAGGVCRTNVQLPGKVVVITGANTGIGKETARELASRGARVYIACRDVLK 75
Query: 386 GESVAREIQNMTGNQQVLVRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSK 565
GES A EI+ T N QVLVRKLDL+DTKSIRAFA+GFLAEEK LHILINNAGVMMCPYSK
Sbjct: 76 GESAASEIRVDTKNSQVLVRKLDLSDTKSIRAFAEGFLAEEKQLHILINNAGVMMCPYSK 135
Query: 566 TADGFETHMGVNXXXXXXXXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLRGEKFYH 745
TADGFETH+GVN K SAP+RVVNVSS+AHH+G+I FH+L+ EK Y
Sbjct: 136 TADGFETHLGVNHLGHFLLTYLLLEQLKVSAPARVVNVSSVAHHIGKIPFHDLQSEKRYS 195
Query: 746 AGLAYCNSKLANVLFTQELARRLKGSGVTTYSVHPGTVDSELVRHSSLLRWIWWLFSFFI 925
G AYC+SKLANVLFT+ELA+RL+G+GVTTY+VHPG V SELVRHSSLL +W LFS F+
Sbjct: 196 RGFAYCHSKLANVLFTRELAKRLQGTGVTTYAVHPGVVRSELVRHSSLLCLLWRLFSPFV 255
Query: 926 KTPQQGAQTSLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVSCDLLGI 1099
KT ++GAQTSL+CAL EGLE LSG +FSDC WVS +ARN A RLW+VSC+LLGI
Sbjct: 256 KTAREGAQTSLHCALAEGLEPLSGKYFSDCKRTWVSPRARNNKTAERLWNVSCELLGI 313
>ref|NP_065956.1| retinol dehydrogenase 14 (all-trans and 9-cis) [Homo sapiens]
Length = 336
Score = 228 bits (581), Expect = 2e-59
Identities = 124/292 (42%), Positives = 176/292 (60%), Gaps = 17/292 (5%)
Frame = +2
Query: 275 GKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAREIQN------------- 415
GK ++TGAN+G+G+ TA EL + GARV + CRD + E A +++
Sbjct: 43 GKTVLITGANSGLGRATAAELLRLGARVIMGCRDRARAEEAAGQLRRELRQAAECGPEPG 102
Query: 416 MTGNQQVLVRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFETHMG 595
++G +++VR+LDLA +S+RAF + L EE L +LINNAG+ CPY KT DGFE G
Sbjct: 103 VSGVGELIVRELDLASLRSVRAFCQEMLQEEPRLDVLINNAGIFQCPYMKTEDGFEMQFG 162
Query: 596 VNXXXXXXXXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLRGEKFYHAGLAYCNSKL 775
VN K SAPSR+V VSS + G I+F +L E+ Y+ Y SKL
Sbjct: 163 VNHLGHFLLTNLLLGLLKSSAPSRIVVVSSKLYKYGDINFDDLNSEQSYNKSFCYSRSKL 222
Query: 776 ANVLFTQELARRLKGSGVTTYSVHPGTVDSELVRHSSLLRWIWWLFSF----FIKTPQQG 943
AN+LFT+ELARRL+G+ VT +HPG V + L RH + + LF+ F KTP +G
Sbjct: 223 ANILFTRELARRLEGTNVTVNVLHPGIVRTNLGRHIHIPLLVKPLFNLVSWAFFKTPVEG 282
Query: 944 AQTSLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVSCDLLGI 1099
AQTS+Y A + +E +SG +F DC + +A +E+VAR+LWD+S ++G+
Sbjct: 283 AQTSIYLASSPEVEGVSGRYFGDCKEEELLPKAMDESVARKLWDISEVMVGL 334
>ref|NP_653284.1| hypothetical protein LOC147015 [Homo sapiens]
Length = 327
Score = 201 bits (511), Expect = 3e-51
Identities = 122/267 (45%), Positives = 163/267 (61%), Gaps = 8/267 (2%)
Frame = +2
Query: 323 TAKELAKRGARVYLACRDVQKGESVAREIQNMTGNQQVLVRKLDLADTKSIRAFAKGFLA 502
TA ELA+RGARV LACR ++GE+ A +++ +GN +V+ LDLA S+RAFA FL+
Sbjct: 2 TALELARRGARVVLACRSQERGEAAAFDLRQESGNNEVIFMALDLASLASVRAFATAFLS 61
Query: 503 EEKHLHILINNAGVMMCPYSKTADGFETHMGVNXXXXXXXXXXXXXXXKESAPSRVVNVS 682
E L ILI+NAG+ C +T + F + VN K APSRVV V+
Sbjct: 62 SEPRLDILIHNAGISSC--GRTREAFNLLLRVNHIGPFLLTHLLLPCLKACAPSRVVVVA 119
Query: 683 SLAHHMGRIHFHNL-RGEKFYHAGL-AYCNSKLANVLFTQELARRLKGSGVTTYSVHPGT 856
S AH GR+ F L R + L AY ++KLANVLF +ELA +L+ +GVT Y+ HPG
Sbjct: 120 SAAHCRGRLDFKRLDRPVVGWRQELRAYADTKLANVLFARELANQLEATGVTCYAAHPGP 179
Query: 857 VDSEL-VRH-----SSLLRWIWWLFSFFIKTPQQGAQTSLYCALTEGLEVLSGNHFSDCH 1018
V+SEL +RH LLR + WL ++ P+ GAQT LYCAL EG+E LSG +F++CH
Sbjct: 180 VNSELFLRHVPGWLRPLLRPLAWL---VLRAPRGGAQTPLYCALQEGIEPLSGRYFANCH 236
Query: 1019 VAWVSAQARNETVARRLWDVSCDLLGI 1099
V V AR++ A RLW+ S L G+
Sbjct: 237 VEEVPPAARDDRAAHRLWEASKRLAGL 263
>ref|NP_612421.1| retinol dehydrogenase 13 (all-trans and 9-cis) [Homo sapiens]
Length = 260
Score = 188 bits (478), Expect = 2e-47
Identities = 112/251 (44%), Positives = 148/251 (58%), Gaps = 10/251 (3%)
Frame = +2
Query: 377 VQKGESVAREIQNMTGNQQVLVRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCP 556
++K E+ A++I+ T N V R LDLA KSIR FA + EE+ + ILINNAGVM CP
Sbjct: 1 MEKCEAAAKDIRGETLNHHVNARHLDLASLKSIREFAAKIIEEEERVDILINNAGVMRCP 60
Query: 557 YSKTADGFETHMGVNXXXXXXXXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLRGE- 733
+ T DGFE GVN K SAPSR++N+SSLAH G I F +L +
Sbjct: 61 HWTTEDGFEMQFGVNHLGHFLLTNLLLDKLKASAPSRIINLSSLAHVAGHIDFDDLNWQT 120
Query: 734 KFYHAGLAYCNSKLANVLFTQELARRLKGSGVTTYSVHPGTVDSELVRH---------SS 886
+ Y+ AYC SKLA VLFT+EL+RRL+GSGVT ++HPG +EL RH S+
Sbjct: 121 RKYNTKAAYCQSKLAIVLFTKELSRRLQGSGVTVNALHPGVARTELGRHTGIHGSTFSST 180
Query: 887 LLRWIWWLFSFFIKTPQQGAQTSLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARR 1066
L I+WL +K+P+ AQ S Y A+ E L +SG +F + +A +E VARR
Sbjct: 181 TLGPIFWL---LVKSPELAAQPSTYLAVAEELADVSGKYFDGLKQKAPAPEAEDEEVARR 237
Query: 1067 LWDVSCDLLGI 1099
LW S L+G+
Sbjct: 238 LWAESARLVGL 248
>ref|NP_057457.1| WW domain-containing oxidoreductase isoform 1 [Homo sapiens]
Length = 414
Score = 177 bits (448), Expect = 6e-44
Identities = 112/284 (39%), Positives = 150/284 (52%), Gaps = 15/284 (5%)
Frame = +2
Query: 275 GKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAREIQNMTGNQQVLVRKLD 454
GKV VVTGAN+GIG ETAK A GA V LACR++ + I +V LD
Sbjct: 124 GKVVVVTGANSGIGFETAKSFALHGAHVILACRNMARASEAVSRILEEWHKAKVEAMTLD 183
Query: 455 LADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFETHMGVNXXXXXXXXXXX 634
LA +S++ FA+ F A+ LH+L+ NA P+S T DG ET VN
Sbjct: 184 LALLRSVQHFAEAFKAKNVPLHVLVCNAATFALPWSLTKDGLETTFQVNHLGHFYLVQLL 243
Query: 635 XXXXKESAPSRVVNVSSLAHH-------MGRIHFHNLRGEK-FYHAGLAYCNSKLANVLF 790
SAP+RV+ VSS +H +G++ F L K Y A LAY SKL N+LF
Sbjct: 244 QDVLCRSAPARVIVVSSESHRFTDINDSLGKLDFSRLSPTKNDYWAMLAYNRSKLCNILF 303
Query: 791 TQELARRLKGSGVTTYSVHPGTVDSELVRHSSLLRWIWWLFSF-------FIKTPQQGAQ 949
+ EL RRL GVT+ +VHPG + + S WW+++ F K+ QQGA
Sbjct: 304 SNELHRRLSPRGVTSNAVHPGNMMYSNIHRS------WWVYTLLFTLARPFTKSMQQGAA 357
Query: 950 TSLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVS 1081
T++YCA LE L G +F++C S +A++E AR LW +S
Sbjct: 358 TTVYCAAVPELEGLGGMYFNNCCRCMPSPEAQSEETARTLWALS 401
>ref|NP_660160.1| dehydrogenase/reductase (SDR family) X-linked [Homo sapiens]
Length = 330
Score = 171 bits (433), Expect = 3e-42
Identities = 109/290 (37%), Positives = 149/290 (51%), Gaps = 14/290 (4%)
Frame = +2
Query: 272 PGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAREIQNMTGNQQVLVRKL 451
P +VA+VTG GIG TAK LA+ G V +A + K + V +I+ T N +V
Sbjct: 42 PDRVAIVTGGTDGIGYSTAKHLARLGMHVIIAGNNDSKAKQVVSKIKEETLNDKVEFLYC 101
Query: 452 DLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFETHMGVNXXXXXXXXXX 631
DLA SIR F + F ++ LH+LINNAGVMM P KT DGFE H G+N
Sbjct: 102 DLASMTSIRQFVQKFKMKKIPLHVLINNAGVMMVPQRKTRDGFEEHFGLNYLGHFLLTNL 161
Query: 632 XXXXXKESA----PSRVVNVSSLAHHMGRIHFHNLRGEKFYHAGLAYCNSKLANVLFTQE 799
KES +RVV VSS H++ ++ +L+ Y AY SKLA VLFT
Sbjct: 162 LLDTLKESGSPGHSARVVTVSSATHYVAELNMDDLQSSACYSPHAAYAQSKLALVLFTYH 221
Query: 800 LARRL--KGSGVTTYSVHPGTVDSELVRH--------SSLLRWIWWLFSFFIKTPQQGAQ 949
L R L +GS VT V PG V+++L +H LL W+ KTP +GA
Sbjct: 222 LQRLLAAEGSHVTANVVDPGVVNTDLYKHVFWATRLAKKLLGWL------LFKTPDEGAW 275
Query: 950 TSLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVSCDLLGI 1099
TS+Y A+T LE + G + + N+ + ++LW SC++ G+
Sbjct: 276 TSIYAAVTPELEGVGGRYLYNEKETKSLHVTYNQKLQQQLWSKSCEMTGV 325
>ref|XP_371503.3| PREDICTED: similar to short-chain dehydrogenase/reductase 1 [Homo
sapiens]
Length = 891
Score = 91.3 bits (225), Expect = 4e-18
Identities = 50/120 (41%), Positives = 78/120 (65%), Gaps = 3/120 (2%)
Frame = +2
Query: 233 MLSSGVCTSTVQ--LPGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVARE 406
+LSSGV + L GK+A+VTGAN+GIGK +++LA+ GA+V L C+ + G+ E
Sbjct: 586 LLSSGVPEQEDKEDLTGKIAIVTGANSGIGKVVSQDLARCGAQVILTCQSRECGQQALAE 645
Query: 407 IQNMTGNQQVLVRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVM-MCPYSKTADGFE 583
IQ + + ++L+ ++DL+ SIR+FA+ L E +H+L+NNAGV M P + T G +
Sbjct: 646 IQAASNSNRLLLGEVDLSSMTSIRSFARRLLQENPEIHLLVNNAGVSGMIPKTLTPGGLD 705
>ref|XP_947127.1| PREDICTED: similar to short-chain dehydrogenase/reductase 1 [Homo
sapiens]
Length = 916
Score = 91.3 bits (225), Expect = 4e-18
Identities = 50/120 (41%), Positives = 78/120 (65%), Gaps = 3/120 (2%)
Frame = +2
Query: 233 MLSSGVCTSTVQ--LPGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVARE 406
+LSSGV + L GK+A+VTGAN+GIGK +++LA+ GA+V L C+ + G+ E
Sbjct: 611 LLSSGVPEQEDKEDLTGKIAIVTGANSGIGKVVSQDLARCGAQVILTCQSRECGQQALAE 670
Query: 407 IQNMTGNQQVLVRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVM-MCPYSKTADGFE 583
IQ + + ++L+ ++DL+ SIR+FA+ L E +H+L+NNAGV M P + T G +
Sbjct: 671 IQAASNSNRLLLGEVDLSSMTSIRSFARRLLQENPEIHLLVNNAGVSGMIPKTLTPGGLD 730
>ref|NP_078981.1| hypothetical protein FLJ13639 isoform 2 [Homo sapiens]
Length = 242
Score = 69.7 bits (169), Expect = 1e-11
Identities = 52/211 (24%), Positives = 98/211 (46%), Gaps = 1/211 (0%)
Frame = +2
Query: 377 VQKGESVAREIQNMTGNQQVLVRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCP 556
+++ ++A+++ + ++ + + +DL+D K I F + F E K LH+LINNAG M+
Sbjct: 25 LEETAALAKQLPLKSPSENIFLHIVDLSDPKQIWKFVENFKQEHK-LHVLINNAGCMVNK 83
Query: 557 YSKTADGFETHMGVNXXXXXXXXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLRGEK 736
T DG E + N ++ RV+ VSS + +++ ++L+ E+
Sbjct: 84 RELTEDGLEKNFAANTLGVYILTTGLIPVLEKEHDPRVITVSSGGMLVQKLNTNDLQSER 143
Query: 737 F-YHAGLAYCNSKLANVLFTQELARRLKGSGVTTYSVHPGTVDSELVRHSSLLRWIWWLF 913
+ + Y +K V+ T+ A+ + S+HPG D+ VR + + F
Sbjct: 144 TPFDGTMVYAQNKRQQVVLTERWAQ--GHPAIHFSSMHPGWADTPGVRQA--MPGFHARF 199
Query: 914 SFFIKTPQQGAQTSLYCALTEGLEVLSGNHF 1006
+++ QGA T L+ AL+ F
Sbjct: 200 GDRLRSEAQGADTMLWLALSSAAAAQPSGRF 230
Database: RefSeqHP
Posted date: Aug 2, 2006 12:57 AM
Number of letters in database: 17,774,539
Number of sequences in database: 39,411
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,297,774
Number of Sequences: 39411
Number of extensions: 2726188
Number of successful extensions: 6712
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 5601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6677
length of database: 17,774,539
effective HSP length: 111
effective length of database: 13,399,918
effective search space used: 11322930710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqSP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0053_F06
(2870 letters)
Database: RefSeqSP
1040 sequences; 434,620 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999238.1| 20-beta-hydroxysteroid dehydrogenase [Sus scrofa] 53 3e-08
Alignment gi|NP_998992.1| carbonyl reductase [Sus scrofa] 53 3e-08
>ref|NP_999238.1| 20-beta-hydroxysteroid dehydrogenase [Sus scrofa]
Length = 289
Score = 53.1 bits (126), Expect = 3e-08
Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 1/137 (0%)
Frame = +2
Query: 278 KVAVVTGANTGIGKETAKELAKRGAR-VYLACRDVQKGESVAREIQNMTGNQQVLVRKLD 454
+VA+VTGAN GIG ++L ++ A V L RDV +G++ +++Q +LD
Sbjct: 6 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQ--AEGLSPRFHQLD 63
Query: 455 LADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFETHMGVNXXXXXXXXXXX 634
+ D +SIRA E L +L+NNA + + T + + +
Sbjct: 64 IIDLQSIRALCDFLRKEYGGLDVLVNNAAIAFQLDNPTPFHIQAELTMKTNFMGTRNVCT 123
Query: 635 XXXXKESAPSRVVNVSS 685
RVVNVSS
Sbjct: 124 ELLPLIKPQGRVVNVSS 140
>ref|NP_998992.1| carbonyl reductase [Sus scrofa]
Length = 244
Score = 53.1 bits (126), Expect = 3e-08
Identities = 58/198 (29%), Positives = 83/198 (41%), Gaps = 3/198 (1%)
Frame = +2
Query: 275 GKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAREIQNMTGNQQVLVRKLD 454
G A+VTGA GIG++T K L GARV R G+ V+ Q G + V V D
Sbjct: 7 GLRALVTGAGKGIGRDTVKALHVSGARVVAVTR--TNGDLVSLS-QECPGIEPVCV---D 60
Query: 455 LADTKSIRAFAKGFLAEEKHLHILINNAGV-MMCPY-SKTADGFETHMGVNXXXXXXXXX 628
L D ++ G + +L+NNA V +M P+ T + F+ VN
Sbjct: 61 LGDWEATERALGGV----GPVDLLVNNAAVALMQPFLDTTKEVFDRSFNVNLRSVFQVSQ 116
Query: 629 XXXXXXKE-SAPSRVVNVSSLAHHMGRIHFHNLRGEKFYHAGLAYCNSKLANVLFTQELA 805
E P +VNVSS+ H+ Y AY ++K A + T+ +A
Sbjct: 117 IVARSMIERGVPGSIVNVSSMVSHV------------TYPGLAAYSSTKGAMTMLTKSMA 164
Query: 806 RRLKGSGVTTYSVHPGTV 859
L + SV+P V
Sbjct: 165 MELGPHKIRVNSVNPTVV 182
Database: RefSeqSP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 434,620
Number of sequences in database: 1040
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,560,488
Number of Sequences: 1040
Number of extensions: 64572
Number of successful extensions: 178
Number of sequences better than 1.0e-05: 2
Number of HSP's better than 0.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 434,620
effective HSP length: 86
effective length of database: 345,180
effective search space used: 300306600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0053_F06
(2870 letters)
Database: RefSeqMP
45,328 sequences; 21,768,885 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_067532.2| short-chain dehydrogenase/reductase 1 [Mus musc... 490 e-138
Alignment gi|NP_084293.1| retinol dehydrogenase 12 [Mus musculus] 393 e-109
Alignment gi|NP_780581.1| retinol dehydrogenase 13 (all-trans and 9-cis) ... 251 4e-66
Alignment gi|NP_076186.1| alcohol dehydrogenase PAN2 [Mus musculus] 228 4e-59
Alignment gi|NP_062519.2| WW-domain oxidoreductase [Mus musculus] 175 2e-43
Alignment gi|NP_001028498.1| dehydrogenase/reductase (SDR family) X chrom... 174 6e-43
Alignment gi|NP_899109.1| hypothetical protein LOC70451 [Mus musculus] 169 2e-41
Alignment gi|NP_079798.1| retinal short-chain dehydrogenase/reductase 4 [... 68 5e-11
Alignment gi|NP_671755.1| retinol dehydrogenase similar protein 2 [Mus mu... 62 3e-09
Alignment gi|NP_032304.1| hydroxyprostaglandin dehydrogenase 15 (NAD) [Mu... 60 1e-08
>ref|NP_067532.2| short-chain dehydrogenase/reductase 1 [Mus musculus]
Length = 316
Score = 490 bits (1262), Expect = e-138
Identities = 237/301 (78%), Positives = 263/301 (87%)
Frame = +2
Query: 206 YIAVPQIRKMLSSGVCTSTVQLPGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQK 385
Y+ P+IRKMLSSGVCTS VQLPGKVA+VTGANTGIGKETAK+LA+RGARVYLACRDV K
Sbjct: 15 YLVTPKIRKMLSSGVCTSNVQLPGKVAIVTGANTGIGKETAKDLAQRGARVYLACRDVDK 74
Query: 386 GESVAREIQNMTGNQQVLVRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSK 565
GE AREIQ +TGN QV VRKLDLADTKSIRAFAK FLAEEKHLH+LINNAGVMMCPYSK
Sbjct: 75 GELAAREIQAVTGNSQVFVRKLDLADTKSIRAFAKDFLAEEKHLHLLINNAGVMMCPYSK 134
Query: 566 TADGFETHMGVNXXXXXXXXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLRGEKFYH 745
TADGFE H+GVN KESAPSR+VN+SSL HH+GRIHFHNL+GEKFY
Sbjct: 135 TADGFEMHIGVNHLGHFLLTHLLLEKLKESAPSRIVNLSSLGHHLGRIHFHNLQGEKFYS 194
Query: 746 AGLAYCNSKLANVLFTQELARRLKGSGVTTYSVHPGTVDSELVRHSSLLRWIWWLFSFFI 925
AGLAYC+SKLAN+LFT+ELA+RLKGSGVTTYSVHPGTV SEL R+SS++RW+W LF FI
Sbjct: 195 AGLAYCHSKLANILFTKELAKRLKGSGVTTYSVHPGTVHSELTRYSSIMRWLWQLFFVFI 254
Query: 926 KTPQQGAQTSLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVSCDLLGIPM 1105
KTPQ+GAQTSLYCALTEGLE LSG+HFSDC +AWVS Q RNE +ARRLWDVSCDLLG+P+
Sbjct: 255 KTPQEGAQTSLYCALTEGLESLSGSHFSDCQLAWVSYQGRNEIIARRLWDVSCDLLGLPV 314
Query: 1106 D 1108
D
Sbjct: 315 D 315
>ref|NP_084293.1| retinol dehydrogenase 12 [Mus musculus]
Length = 316
Score = 393 bits (1009), Expect = e-109
Identities = 197/298 (66%), Positives = 235/298 (78%)
Frame = +2
Query: 206 YIAVPQIRKMLSSGVCTSTVQLPGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQK 385
Y+ P IRK + GVCT+ VQ+PGKV V+TGANTGIGKETA+ELA+RGARVY+ACRDV K
Sbjct: 16 YLTAPSIRKFFAGGVCTTNVQIPGKVVVITGANTGIGKETARELARRGARVYIACRDVLK 75
Query: 386 GESVAREIQNMTGNQQVLVRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSK 565
GES A EI+ T N QVLVRKLDL+DTKSIRAFA+ FLAEEK LHILINNAGVMMCPYSK
Sbjct: 76 GESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAERFLAEEKKLHILINNAGVMMCPYSK 135
Query: 566 TADGFETHMGVNXXXXXXXXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLRGEKFYH 745
T DGFETH GVN KESAP+RVVN+SS+AH +G+I FH+L+G+K Y
Sbjct: 136 TTDGFETHFGVNHLGHFLLTYLLLERLKESAPARVVNLSSIAHLIGKIRFHDLQGQKRYC 195
Query: 746 AGLAYCNSKLANVLFTQELARRLKGSGVTTYSVHPGTVDSELVRHSSLLRWIWWLFSFFI 925
+ AY +SKLAN+LFT+ELA+RL+G+GVT Y+VHPG V SE+ R+S LL +W LFS F
Sbjct: 196 SAFAYGHSKLANLLFTRELAKRLQGTGVTAYAVHPGVVLSEITRNSYLLCLLWRLFSPFF 255
Query: 926 KTPQQGAQTSLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVSCDLLGI 1099
K+ QGAQTSL+CAL E LE LSG +FSDC WVS++ARN+ A RLW+VSC+LLGI
Sbjct: 256 KSTSQGAQTSLHCALAEDLEPLSGKYFSDCKRMWVSSRARNKKTAERLWNVSCELLGI 313
>ref|NP_780581.1| retinol dehydrogenase 13 (all-trans and 9-cis) [Mus musculus]
Length = 334
Score = 251 bits (640), Expect = 4e-66
Identities = 141/305 (46%), Positives = 183/305 (60%), Gaps = 11/305 (3%)
Frame = +2
Query: 224 IRKMLSSGVCTSTVQLPGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAR 403
++ ++ G C S +PGK +VTGANTGIGK+TA ELAKRG V LACRD++K E A+
Sbjct: 21 LKDYVAGGACPSKATIPGKTVIVTGANTGIGKQTALELAKRGGNVILACRDMEKCEVAAK 80
Query: 404 EIQNMTGNQQVLVRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFE 583
+I+ T N +V +LDLA KSIR FA+ + EE+ + IL+NNA VM CP+ T DGFE
Sbjct: 81 DIRGETLNPRVRAERLDLASLKSIREFARKVIKEEERVDILVNNAAVMRCPHWTTEDGFE 140
Query: 584 THMGVNXXXXXXXXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLRGE-KFYHAGLAY 760
GVN K SAPSR++N+SSLAH G I F +L + K Y AY
Sbjct: 141 MQFGVNYLGHFLLTNLLLDKLKASAPSRIINLSSLAHVAGHIDFEDLNWQMKKYDTKAAY 200
Query: 761 CNSKLANVLFTQELARRLKGSGVTTYSVHPGTVDSELVRHSSLLR----------WIWWL 910
C SKLA VLFT+EL+ RL+GSGVT ++HPG +EL RH+ + + W L
Sbjct: 201 CQSKLAVVLFTKELSHRLQGSGVTVNALHPGVARTELGRHTGMHNSAFSGFMLGPFFWLL 260
Query: 911 FSFFIKTPQQGAQTSLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVSCDL 1090
F K+PQ AQ S Y A+ E LE +SG +F S +A +E VARRLW S L
Sbjct: 261 F----KSPQLAAQPSTYLAVAEELENVSGKYFDGLREKAPSPEAEDEEVARRLWTESARL 316
Query: 1091 LGIPM 1105
+G+ M
Sbjct: 317 VGLAM 321
>ref|NP_076186.1| alcohol dehydrogenase PAN2 [Mus musculus]
Length = 334
Score = 228 bits (580), Expect = 4e-59
Identities = 127/289 (43%), Positives = 177/289 (61%), Gaps = 14/289 (4%)
Frame = +2
Query: 275 GKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAREIQNMT----------G 424
GK ++TGAN+G+G+ TA EL + GARV + CRD + E A +++
Sbjct: 44 GKTVLITGANSGLGRATAAELLRLGARVIMGCRDRARAEEAAGQLRQELCQAGGAGPDGT 103
Query: 425 NQQVLVRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFETHMGVNX 604
+ Q++V++LDLA +S+RAF + L EE L +LINNAGV CPY+KT DGFE GVN
Sbjct: 104 DGQLVVKELDLASLRSVRAFCQELLQEEPRLDVLINNAGVFHCPYTKTEDGFEMQFGVNH 163
Query: 605 XXXXXXXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLRGEKFYHAGLAYCNSKLANV 784
K SAPSR+V VSS + G I+F +L E+ Y+ Y SKLAN+
Sbjct: 164 LGHFLLTNLLLGLLKSSAPSRIVVVSSKLYKYGEINFEDLNSEQSYNKSFCYSRSKLANI 223
Query: 785 LFTQELARRLKGSGVTTYSVHPGTVDSELVRH---SSLLRWIWWLFSF-FIKTPQQGAQT 952
LFT+ELARRL+G+ VT +HPG V + L RH L R ++ L S+ F KTP +GAQT
Sbjct: 224 LFTRELARRLEGTNVTVNVLHPGIVRTNLGRHIHIPLLARPLFNLVSWAFFKTPLEGAQT 283
Query: 953 SLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVSCDLLGI 1099
S+Y A + +E +SG +F DC + +A +E+VAR+LWD+S ++GI
Sbjct: 284 SIYLACSPDVEGVSGRYFGDCKEEELLPKAMDESVARKLWDISEVMVGI 332
>ref|NP_062519.2| WW-domain oxidoreductase [Mus musculus]
Length = 414
Score = 175 bits (444), Expect = 2e-43
Identities = 113/289 (39%), Positives = 157/289 (54%), Gaps = 13/289 (4%)
Frame = +2
Query: 275 GKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAREIQNMTGNQQVLVRKLD 454
GKV +VTGAN+GIG ETAK A GA V LACR++ + I +V LD
Sbjct: 124 GKVVLVTGANSGIGFETAKSFALHGAHVILACRNLSRASEAVSRILEEWHKAKVEAMTLD 183
Query: 455 LADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFETHMGVNXXXXXXXXXXX 634
LA +S++ FA+ F A+ LH+L+ NAG P+ T DG ET VN
Sbjct: 184 LAVLRSVQHFAEAFKAKNVSLHVLVCNAGTFALPWGLTKDGLETTFQVNHLGHFYLVQLL 243
Query: 635 XXXXKESAPSRVVNVSSLAHHM-------GRIHFHNLRGEKF-YHAGLAYCNSKLANVLF 790
S+P+RV+ VSS +H G++ L + Y A LAY SKL N+LF
Sbjct: 244 QDVLCRSSPARVIVVSSESHRFTDINDSSGKLDLSRLSPPRSDYWAMLAYNRSKLCNILF 303
Query: 791 TQELARRLKGSGVTTYSVHPGT-VDSELVRHSSLLRWIWWLFSFFIKTPQQGAQTSLYCA 967
+ EL RRL GVT+ +VHPG + S + R+S + + ++ L F K+ QQGA T++YCA
Sbjct: 304 SNELHRRLSPRGVTSNAVHPGNMMYSAIHRNSWVYKLLFTLARPFTKSMQQGAATTVYCA 363
Query: 968 LTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVS----CDLLGIP 1102
+ LE L G +F++C S +A++E AR LW++S D LG P
Sbjct: 364 VAPELEGLGGMYFNNCCRCLPSEEAQSEETARALWELSERLIQDRLGSP 412
>ref|NP_001028498.1| dehydrogenase/reductase (SDR family) X chromosome [Mus musculus]
Length = 335
Score = 174 bits (440), Expect = 6e-43
Identities = 109/286 (38%), Positives = 150/286 (52%), Gaps = 11/286 (3%)
Frame = +2
Query: 272 PGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAREIQNMTGNQQVLVRKL 451
PG+VA+VTGA GIG+ TA++LA+ G V +A D +G+ V I+ G+ + L
Sbjct: 42 PGRVAIVTGATAGIGRSTARQLARLGMCVVVAGNDEHRGQEVVSSIRAEMGSDRAHFLPL 101
Query: 452 DLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFETHMGVNXXXXXXXXX- 628
DLA S+R FA+ F A LH+L+NNAGVM+ P ++T DGFE H+GVN
Sbjct: 102 DLASLASVRGFARDFQALGLPLHLLVNNAGVMLEPRAETEDGFERHLGVNFLGHFLLTLL 161
Query: 629 ---XXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLRGEKFYHAGLAYCNSKLANVLFTQE 799
E SRVV V S H++G + +L G Y AY SKLA LF +
Sbjct: 162 LLPALRASGAEGRGSRVVTVGSATHYVGTVDMADLHGRHAYSPYAAYAQSKLALALFALQ 221
Query: 800 LARRL--KGSGVTTYSVHPGTVDSELVRHSSLL-----RWIWWLFSFFIKTPQQGAQTSL 958
L R L +G VT+ PG VD+EL RH+ + R++ WL K+P++GA T +
Sbjct: 222 LQRILDARGDPVTSNMADPGVVDTELYRHAGWVLRTAKRFLGWL---VFKSPEEGAWTLV 278
Query: 959 YCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVSCDLLG 1096
Y A LE + G + D A AR++ + RRLW L G
Sbjct: 279 YAAAAPELEGVGGRYLRDEAEAEPLGTARDQELQRRLWAEGLRLTG 324
>ref|NP_899109.1| hypothetical protein LOC70451 [Mus musculus]
Length = 260
Score = 169 bits (428), Expect = 2e-41
Identities = 103/230 (44%), Positives = 137/230 (59%), Gaps = 8/230 (3%)
Frame = +2
Query: 251 CTSTVQLPGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAREIQNMTGNQ 430
C L G+ VVTGAN+GIGK TA ELA+RGARV LACR ++GE+ A +++ +GN
Sbjct: 28 CGGIGSLRGRTVVVTGANSGIGKMTALELARRGARVVLACRSRERGEAAAFDLRQESGNN 87
Query: 431 QVLVRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFETHMGVNXXX 610
+V+ LDLA S++AFA FL+ E L +LI+NAG+ C +T + F + VN
Sbjct: 88 EVIFMALDLASLASVQAFATAFLSSEPRLDVLIHNAGISSC--GRTRETFNLLLRVNHVG 145
Query: 611 XXXXXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLRGE--KFYHAGLAYCNSKLANV 784
+ APSRVV VSS AH GR+ F L + AY +SKLANV
Sbjct: 146 PFLLTHLLLPRLRSCAPSRVVIVSSAAHRRGRLDFTRLDCPVVGWQQELRAYADSKLANV 205
Query: 785 LFTQELARRLKGSGVTTYSVHPGTVDSEL-VRH-----SSLLRWIWWLFS 916
LF +ELA +L+G+GVT Y+ HPG V+SEL +RH +LR + WL S
Sbjct: 206 LFARELATQLEGTGVTCYAAHPGPVNSELFLRHLRGWLRPILRPLAWLCS 255
>ref|NP_079798.1| retinal short-chain dehydrogenase/reductase 4 [Mus musculus]
Length = 288
Score = 68.2 bits (165), Expect = 5e-11
Identities = 63/207 (30%), Positives = 91/207 (43%), Gaps = 6/207 (2%)
Frame = +2
Query: 281 VAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAREIQNMTGN---QQVLVRKL 451
V VTGA++GIG+E A +L+K G + L+ R Q+ E V R GN + +LV L
Sbjct: 2 VVWVTGASSGIGEELAFQLSKLGVSLVLSARRAQELERVKRRCLE-NGNLKEKDILVLPL 60
Query: 452 DLADTKSIRAFAKGFLAEEKHLHILINNAG--VMMCPYSKTADGFETHMGVNXXXXXXXX 625
DL DT S A K L E + IL+NN G D F+ + +N
Sbjct: 61 DLTDTSSHEAATKAVLQEFGKIDILVNNGGRSQRSLVLETNLDVFKELINLNYIGTVSLT 120
Query: 626 XXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLRGEKFYHAGLAYCNSKLANVLFTQELA 805
E ++V V+S+A G YC SK A F L
Sbjct: 121 KCVLPHMIERKQGKIVTVNSIA------------GIASVSLSSGYCASKHALRGFFNALH 168
Query: 806 RRL-KGSGVTTYSVHPGTVDSELVRHS 883
L + G+T +V+PG V S++V+++
Sbjct: 169 SELGQYPGITFCNVYPGPVQSDIVKNA 195
>ref|NP_671755.1| retinol dehydrogenase similar protein 2 [Mus musculus]
Length = 318
Score = 62.4 bits (150), Expect = 3e-09
Identities = 68/221 (30%), Positives = 98/221 (44%), Gaps = 9/221 (4%)
Frame = +2
Query: 269 LPGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAREIQNMTGNQQVLVRK 448
L K +TG ++G G A++L +RG RV AC +KG A E++N T ++ V
Sbjct: 27 LQDKYVFITGCDSGFGNLLARQLDRRGMRVLAACL-TEKG---AEELRNKTSDRLETV-I 81
Query: 449 LDLADTKSIRAFAKGFLAE---EKHLHILINNAGVMM---CPYSKTADGFETHMGVNXXX 610
LD+ T+SI A A ++ E + L L+NNAG+ + F + + VN
Sbjct: 82 LDVTKTESIVA-ATQWVKERVGNRGLWGLVNNAGISVPLGLSQWMNKQNFASVLDVNLLG 140
Query: 611 XXXXXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLRGEKFYHAGLAYCNSKLANVLF 790
++ A RVVNVSS+ MGR+ H G YC SK F
Sbjct: 141 MIEVTLTMLPLVRK-ARGRVVNVSSI---MGRVSLHGNGG---------YCISKYGVEAF 187
Query: 791 TQELARRLKGSGVTTYSVHPG---TVDSELVRHSSLLRWIW 904
+ L R L GV + PG T + R SS + +W
Sbjct: 188 SDSLRRELSYFGVKVAIIEPGFFLTGMASSARLSSNTQMLW 228
>ref|NP_032304.1| hydroxyprostaglandin dehydrogenase 15 (NAD) [Mus musculus]
Length = 266
Score = 60.5 bits (145), Expect = 1e-08
Identities = 57/205 (27%), Positives = 86/205 (41%), Gaps = 5/205 (2%)
Frame = +2
Query: 275 GKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAREIQNMTGNQQVLVRKLD 454
GKVA+VTGA GIGK A+ L GA+V L +++ G + Q+ L + D
Sbjct: 5 GKVALVTGAAQGIGKAFAEALLLHGAKVALVDWNLEAGVKCKAALDEQFEPQKTLFVQCD 64
Query: 455 LADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFETHMGVNXXXXXXXXXXX 634
+AD K +R + + L IL+NNAGV +E + +N
Sbjct: 65 VADQKQLRDTFRKVVDHFGRLDILVNNAGV------NNEKNWEQTLQINLVSVIGGTYLG 118
Query: 635 XXXXKESAPSR---VVNVSSLAHHMGRIHFHNLRGEKFYHAGLAYCNSKLANVLFTQE-- 799
+ ++N+SSLA G YC+SK + FT+
Sbjct: 119 LDYMSKQNGGEGGIIINMSSLA------------GLMPVAQQPVYCSSKHGIIGFTRSAA 166
Query: 800 LARRLKGSGVTTYSVHPGTVDSELV 874
+A L SGV + PG VD+ ++
Sbjct: 167 MAANLMKSGVRLNVICPGFVDTPIL 191
Database: RefSeqMP
Posted date: Aug 2, 2006 12:58 AM
Number of letters in database: 21,768,885
Number of sequences in database: 45,328
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126,408,318
Number of Sequences: 45328
Number of extensions: 3195910
Number of successful extensions: 7959
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 6556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7916
length of database: 21,768,885
effective HSP length: 113
effective length of database: 16,646,821
effective search space used: 14033270103
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)