Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0082_H02
(1617 letters)
Database: RefSeqBP
33,508 sequences; 16,112,626 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_612082.2| PREDICTED: similar to LanC-like protein 1 (40 k... 780 0.0
Alignment gi|XP_614740.2| PREDICTED: similar to LanC-like protein 2 (Test... 296 4e-80
Alignment gi|XP_611101.2| PREDICTED: similar to LanC-like protein 2 (Test... 186 5e-47
Alignment gi|XP_597454.2| PREDICTED: similar to LanC lantibiotic syntheta... 179 4e-45
>ref|XP_612082.2| PREDICTED: similar to LanC-like protein 1 (40 kDa erythrocyte
membrane protein) (p40) [Bos taurus]
Length = 399
Score = 780 bits (2013), Expect = 0.0
Identities = 367/399 (91%), Positives = 384/399 (96%)
Frame = +3
Query: 318 MAQRAFPNPYADFNKSLAEGYFDSAGRLTPEFSQRVNNKIRELLQQMERGLKSADPRDGT 497
MAQRAFPNPYAD+NKSLAEGYFDSAGRLTPEFSQR+NNKIRELLQQMERGLKSADPRD T
Sbjct: 1 MAQRAFPNPYADYNKSLAEGYFDSAGRLTPEFSQRLNNKIRELLQQMERGLKSADPRDST 60
Query: 498 AYTGWAGIAVLYLHLYDVFGDPAYLQMAHGYAKQSLNCLTKRSITFLCGDAGPLAVAAVV 677
YTGWAGIAVLYLHLYDVFGDP YLQMAHGY KQSLN L+K SITFLCGD GPLAVAAVV
Sbjct: 61 VYTGWAGIAVLYLHLYDVFGDPNYLQMAHGYVKQSLNSLSKHSITFLCGDGGPLAVAAVV 120
Query: 678 HDKMNNEKQAEDCITRLIHLNKIDPHAPNEMLYGRMGYIYALLFVNKNFGVEKIPRSHIQ 857
H KMNNEKQAE+CITRLIHLNKIDPHAP+EMLYGRMGYI ALLFVNKNFG EKIP+SHIQ
Sbjct: 121 HHKMNNEKQAEECITRLIHLNKIDPHAPSEMLYGRMGYISALLFVNKNFGEEKIPQSHIQ 180
Query: 858 QICETVLTSGENLARKRNFTEKTPLMYEWYQEYYVGAAHGLAGIYYYLMQPSLQVSHAKL 1037
QICETVLTSGE+LARKR FT KTPLMYEWYQEYYVGAAHGLAGIYYYLMQPSLQVSHAKL
Sbjct: 181 QICETVLTSGEDLARKRRFTGKTPLMYEWYQEYYVGAAHGLAGIYYYLMQPSLQVSHAKL 240
Query: 1038 QSLVKPSVDYVCQLKFPSGNYPPCVDDTRDLLVHWCHGSPGVIYMLIQAYKVFREERYLN 1217
+LVKPSVDYVCQLKFPSGNYPPCVDD+RDLL+HWCHG+PGVIYML QAYKVF+EERYLN
Sbjct: 241 HNLVKPSVDYVCQLKFPSGNYPPCVDDSRDLLIHWCHGAPGVIYMLTQAYKVFKEERYLN 300
Query: 1218 DAYQCADVIWKYGLLKKGYGLCHGTAGNAYAFLTLFNLTQDMKYLYRACKFAEWCLDYGE 1397
DAYQCADVIW+YGLLKKGYGLCHGTAGNAYAFL+L++LTQD KYLYRACKFAEWCLDYGE
Sbjct: 301 DAYQCADVIWQYGLLKKGYGLCHGTAGNAYAFLSLYSLTQDAKYLYRACKFAEWCLDYGE 360
Query: 1398 HGCRTPDTPFSLFEGMAGTIYFLADLLVPTKAKFPAFEL 1514
HGCRTPDTPFSLFEGMAGTIYFLADLLVPTKA+FPAFEL
Sbjct: 361 HGCRTPDTPFSLFEGMAGTIYFLADLLVPTKARFPAFEL 399
>ref|XP_614740.2| PREDICTED: similar to LanC-like protein 2 (Testis-specific adriamycin
sensitivity protein), partial [Bos taurus]
Length = 331
Score = 296 bits (757), Expect = 4e-80
Identities = 143/313 (45%), Positives = 206/313 (65%), Gaps = 22/313 (7%)
Frame = +3
Query: 318 MAQRAFPNPYADFNKSLAEGY------------------FDSAGRLTPEFSQRVNNKIRE 443
M RAFPNP+ D+ + F S G++ F++R+ KI++
Sbjct: 19 MEDRAFPNPFPDYEAAAERQAEEPPCSRTPLSPEELGLPFHSDGKIINNFTRRIQTKIKD 78
Query: 444 LLQQMERGLKSADPRDGTAYTGWAGIAVLYLHLYDVFGDPAYLQMAHGYAKQSLNCLTKR 623
LLQQME GLK+ADP D +AYTGW GIA+LYL LY V D +YL + Y K++L L R
Sbjct: 79 LLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQSYLLRSLDYVKRTLRNLNGR 138
Query: 624 SITFLCGDAGPLAVAAVVHDKMNNEKQAEDCITRLIHLNKI----DPHAPNEMLYGRMGY 791
+TFLCGDAGPLAV AVV+ K+ ++ ++++CIT+L+ L + D P+E+LYGR GY
Sbjct: 139 RVTFLCGDAGPLAVGAVVYHKLKSDCESQECITKLLQLQRTIVCRDSDLPDELLYGRAGY 198
Query: 792 IYALLFVNKNFGVEKIPRSHIQQICETVLTSGENLARKRNFTEKTPLMYEWYQEYYVGAA 971
+YALL+VN G + S I+++ ++ SG+ L+++ E+ PL+Y+W+++ YVGAA
Sbjct: 199 LYALLYVNTEIGPGAVCESAIKEVVNAIIESGKALSKEEKKVERCPLLYQWHRKQYVGAA 258
Query: 972 HGLAGIYYYLMQPSLQVSHAKLQSLVKPSVDYVCQLKFPSGNYPPCVDDTRDLLVHWCHG 1151
HG+AGIYY LMQP+ +V L +VKPS+DY+ +F SGNYP + + D LVHWCHG
Sbjct: 259 HGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDRLVHWCHG 318
Query: 1152 SPGVIYMLIQAYK 1190
+PGVI++L+QA+K
Sbjct: 319 APGVIHVLMQAHK 331
>ref|XP_611101.2| PREDICTED: similar to LanC-like protein 2 (Testis-specific adriamycin
sensitivity protein), partial [Bos taurus]
Length = 149
Score = 186 bits (472), Expect = 5e-47
Identities = 78/108 (72%), Positives = 97/108 (89%)
Frame = +3
Query: 1191 VFREERYLNDAYQCADVIWKYGLLKKGYGLCHGTAGNAYAFLTLFNLTQDMKYLYRACKF 1370
VF+EE+YL DA +C+DVIW+ GLL+KGYG+CHGTAGN Y+FL+L+++TQD KYLYRACKF
Sbjct: 30 VFKEEKYLKDAVECSDVIWQRGLLRKGYGICHGTAGNGYSFLSLYHITQDKKYLYRACKF 89
Query: 1371 AEWCLDYGEHGCRTPDTPFSLFEGMAGTIYFLADLLVPTKAKFPAFEL 1514
AEWCL+YG HGCR PD P+SLFEGMAGTI+FL+D+L P ++FPAFEL
Sbjct: 90 AEWCLEYGAHGCRIPDRPYSLFEGMAGTIHFLSDILAPEASRFPAFEL 137
>ref|XP_597454.2| PREDICTED: similar to LanC lantibiotic synthetase component C-like 3
[Bos taurus]
Length = 244
Score = 179 bits (455), Expect = 4e-45
Identities = 94/236 (39%), Positives = 149/236 (63%), Gaps = 4/236 (1%)
Frame = +3
Query: 819 NFGVEKIPRSHIQQICETVLTSGENLARKRNFTEKTPLMYEWYQEYYVGAAHGLAGIYYY 998
+F + + + I+ IC+ +L SG+ A K+ + PLMY +Y Y+GAAHGL+ I
Sbjct: 11 DFLTQVLTPAQIKSICQAILDSGKQYAMKKR--KPFPLMYSYYGTEYLGAAHGLSSILQM 68
Query: 999 LMQPSLQVSHAKLQSLVKPSVDYVCQLKFPSGNYPPCVDDT---RDLLVHWCHGSPGVIY 1169
L+ + + Q LV SVD++ + + + N+PP + + + LVHWCHG+PG+ Y
Sbjct: 69 LLSYHEHLKPSD-QELVWQSVDFLMEQE-QNCNWPPELGEAIERENELVHWCHGAPGIAY 126
Query: 1170 MLIQAYKVFREERYLNDAYQCADVIWKYGLLKKGYGLCHGTAGNAYAFLTLFNLTQDMKY 1349
+ +AY V ++ +YL+ +C ++ W+ GLLKKG G+CHG AG+AY FL L+ LT + KY
Sbjct: 127 LFAKAYLVSKKPQYLDTCIRCGELTWQKGLLKKGPGICHGVAGSAYVFLLLYRLTGNSKY 186
Query: 1350 LYRACKFAEWCL-DYGEHGCRTPDTPFSLFEGMAGTIYFLADLLVPTKAKFPAFEL 1514
+YRA +FAE+ + + G R ++ +SL+EG +GT+ FL DLL P +A+FP F +
Sbjct: 187 IYRAQRFAEFLFTEEFKAGSRVLESIYSLYEGFSGTVCFLIDLLQPNQAEFPLFSV 242
Database: RefSeqBP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 16,112,626
Number of sequences in database: 33,508
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,402,295
Number of Sequences: 33508
Number of extensions: 1518054
Number of successful extensions: 4997
Number of sequences better than 1.0e-05: 4
Number of HSP's better than 0.0 without gapping: 4200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4963
length of database: 16,112,626
effective HSP length: 106
effective length of database: 12,560,778
effective search space used: 5426256096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0082_H02
(1617 letters)
Database: RefSeqCP
33,732 sequences; 19,266,565 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536055.1| PREDICTED: similar to LanC-like protein 1 (40 k... 781 0.0
Alignment gi|XP_540359.2| PREDICTED: similar to LanC-like protein 2 (Test... 471 e-133
Alignment gi|XP_548943.2| PREDICTED: similar to LanC lantibiotic syntheta... 207 3e-53
>ref|XP_536055.1| PREDICTED: similar to LanC-like protein 1 (40 kDa erythrocyte
membrane protein) (p40) [Canis familiaris]
Length = 399
Score = 781 bits (2018), Expect = 0.0
Identities = 368/399 (92%), Positives = 381/399 (95%)
Frame = +3
Query: 318 MAQRAFPNPYADFNKSLAEGYFDSAGRLTPEFSQRVNNKIRELLQQMERGLKSADPRDGT 497
MAQRAFPNPYADFNKSLAE YFD AGRLTPEFSQR+NNKIRELLQQMERGLKSADPRD T
Sbjct: 1 MAQRAFPNPYADFNKSLAESYFDCAGRLTPEFSQRLNNKIRELLQQMERGLKSADPRDST 60
Query: 498 AYTGWAGIAVLYLHLYDVFGDPAYLQMAHGYAKQSLNCLTKRSITFLCGDAGPLAVAAVV 677
YTGWAGIA+LYLHLYDVFGDPAYLQMAHGY KQSLN LTKRSITFLCGDAGPLA+ AVV
Sbjct: 61 VYTGWAGIALLYLHLYDVFGDPAYLQMAHGYVKQSLNSLTKRSITFLCGDAGPLAIGAVV 120
Query: 678 HDKMNNEKQAEDCITRLIHLNKIDPHAPNEMLYGRMGYIYALLFVNKNFGVEKIPRSHIQ 857
+ KMNNEKQAEDCITRLIHLNKID HAPNEMLYGRMGY+YALLFVNKNFGVEKIP+SHIQ
Sbjct: 121 YHKMNNEKQAEDCITRLIHLNKIDHHAPNEMLYGRMGYVYALLFVNKNFGVEKIPQSHIQ 180
Query: 858 QICETVLTSGENLARKRNFTEKTPLMYEWYQEYYVGAAHGLAGIYYYLMQPSLQVSHAKL 1037
QICE VLTSGENLA+KRNFT KTPLMYEWYQEYYVGAAHGLAGIYY LMQPSLQVSH KL
Sbjct: 181 QICEAVLTSGENLAQKRNFTAKTPLMYEWYQEYYVGAAHGLAGIYYLLMQPSLQVSHVKL 240
Query: 1038 QSLVKPSVDYVCQLKFPSGNYPPCVDDTRDLLVHWCHGSPGVIYMLIQAYKVFREERYLN 1217
+LVKPSVDYVCQLKFPSGNYPPCVDD RDLLVHWCHGSPGVIYMLIQAYK FR E YLN
Sbjct: 241 HNLVKPSVDYVCQLKFPSGNYPPCVDDNRDLLVHWCHGSPGVIYMLIQAYKAFRGEHYLN 300
Query: 1218 DAYQCADVIWKYGLLKKGYGLCHGTAGNAYAFLTLFNLTQDMKYLYRACKFAEWCLDYGE 1397
DA+QCADVIW+YGLL+KGYGLCHGTAGNAYAFLTL+NLTQDMKYLYRACKFAEWCLDYGE
Sbjct: 301 DAHQCADVIWRYGLLRKGYGLCHGTAGNAYAFLTLYNLTQDMKYLYRACKFAEWCLDYGE 360
Query: 1398 HGCRTPDTPFSLFEGMAGTIYFLADLLVPTKAKFPAFEL 1514
HGCRTPDTPFSLFEGMAGTIYFLADLLVPTKA+FPAFEL
Sbjct: 361 HGCRTPDTPFSLFEGMAGTIYFLADLLVPTKARFPAFEL 399
>ref|XP_540359.2| PREDICTED: similar to LanC-like protein 2 (Testis-specific adriamycin
sensitivity protein) [Canis familiaris]
Length = 452
Score = 471 bits (1212), Expect = e-133
Identities = 214/377 (56%), Positives = 287/377 (76%), Gaps = 4/377 (1%)
Frame = +3
Query: 396 RLTPEFSQRVNNKIRELLQQMERGLKSADPRDGTAYTGWAGIAVLYLHLYDVFGDPAYLQ 575
R+ F++R+ KI++LLQQME GLK+ADP D +AYTGW GIA+LYL LY V D YL
Sbjct: 67 RIVQNFTKRIQTKIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQTYLL 126
Query: 576 MAHGYAKQSLNCLTKRSITFLCGDAGPLAVAAVVHDKMNNEKQAEDCITRLIHLNKI--- 746
+ Y K++L L R +TFLCGDAGPLAV AVV+ K+ ++ ++++CIT+L+ L +
Sbjct: 127 RSLDYVKRTLRNLNGRRVTFLCGDAGPLAVGAVVYHKLKSDCESQECITKLLQLQRTIVC 186
Query: 747 -DPHAPNEMLYGRMGYIYALLFVNKNFGVEKIPRSHIQQICETVLTSGENLARKRNFTEK 923
D P+E+LYGR GY+YALL++N G + S I+++ ++ SG+ L+R+ E+
Sbjct: 187 RDSDLPDELLYGRAGYLYALLYLNTEIGPGTVCESAIKEVVCAIIESGKTLSREERKAER 246
Query: 924 TPLMYEWYQEYYVGAAHGLAGIYYYLMQPSLQVSHAKLQSLVKPSVDYVCQLKFPSGNYP 1103
PL+Y+W+++ YVGAAHG+AGIYY LMQP+ +V L +VKPS+DYV +F SGNYP
Sbjct: 247 CPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYVRHKRFRSGNYP 306
Query: 1104 PCVDDTRDLLVHWCHGSPGVIYMLIQAYKVFREERYLNDAYQCADVIWKYGLLKKGYGLC 1283
+ + D LVHWCHG+PGVI+ML+QAYKVF+EE+YL DA +C+DVIW+ GLL+KGYG+C
Sbjct: 307 SSLSNETDRLVHWCHGAPGVIHMLMQAYKVFKEEKYLKDAMECSDVIWQRGLLRKGYGIC 366
Query: 1284 HGTAGNAYAFLTLFNLTQDMKYLYRACKFAEWCLDYGEHGCRTPDTPFSLFEGMAGTIYF 1463
HGTAGN Y+FL+L++LTQD KYLYRACKFAEWCL+YG HGCR PD P+SLFEGMAG I+F
Sbjct: 367 HGTAGNGYSFLSLYHLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFEGMAGAIHF 426
Query: 1464 LADLLVPTKAKFPAFEL 1514
L+D+L P ++FPAFEL
Sbjct: 427 LSDILAPETSRFPAFEL 443
>ref|XP_548943.2| PREDICTED: similar to LanC lantibiotic synthetase component C-like 3
[Canis familiaris]
Length = 420
Score = 207 bits (526), Expect = 3e-53
Identities = 136/427 (31%), Positives = 218/427 (51%), Gaps = 27/427 (6%)
Frame = +3
Query: 315 MMAQRAFPNPYADFNKSLAEGYFDSAGRLTPEFSQRVNNKIRELLQ-----QMERGLKSA 479
M +R F N + D+ SL G + A + P + + ++EL + +A
Sbjct: 1 MDTKRCFANRFDDYQGSLLAGQCEEA--VAPLVTATIERILQELPPLGGGAEARGAAAAA 58
Query: 480 DPRDGTAYTGWAGIAVLYLHLYDVFGDPAYLQMAHGY---AKQSLNCLTKRS-------- 626
G Y G AG+A + LY V P + Y AK+ ++ +
Sbjct: 59 SSCQGGLYGGVAGVAYM---LYHVSQSPLFAGARERYLRSAKRLIDACARAEEWGEPDAD 115
Query: 627 --ITFLCGDAGPLAVAAVVHDKMNNEKQAED-----CITRLIHLNKIDPHAPNEMLYGRM 785
FL G AG AVA +V+ + + + + +E+ GR
Sbjct: 116 TRAAFLLGGAGVYAVATLVYHALGRSDYVQPLGKFRALCAVCAPVSFLECGSDELFVGRA 175
Query: 786 GYIYALLFVNKNFGVEKIPRSHIQQICETVLTSGENLARKRNFTEKTPLMYEWYQEYYVG 965
GY+ A L + + E + + I+ IC+ +L SG+ A K+ + PLMY +Y Y+G
Sbjct: 176 GYLCAALVLKQKLAQEVLTPAQIKSICQAILDSGKQYAMKKR--KPFPLMYSYYGTEYLG 233
Query: 966 AAHGLAGIYYYLMQPSLQVSHAKLQSLVKPSVDYVCQLKFPSGNYPPCVDDT---RDLLV 1136
AAHGL+ I L+ + + Q LV SVD++ + + + N+PP + + + LV
Sbjct: 234 AAHGLSSILQMLLSYHEHLKPSD-QELVWQSVDFLMEQE-QNCNWPPELGEAIERENELV 291
Query: 1137 HWCHGSPGVIYMLIQAYKVFREERYLNDAYQCADVIWKYGLLKKGYGLCHGTAGNAYAFL 1316
HWCHG+PG+ Y+ +AY V ++ +YL+ +C ++ W+ GLLKKG G+CHG AG+AY FL
Sbjct: 292 HWCHGAPGIAYLFAKAYLVSKKPQYLDTCIRCGELTWQKGLLKKGPGICHGVAGSAYVFL 351
Query: 1317 TLFNLTQDMKYLYRACKFAEWCL-DYGEHGCRTPDTPFSLFEGMAGTIYFLADLLVPTKA 1493
L+ LT + KY+YRA +FAE+ + + G R ++ +SL+EG +GT+ FL DLL P +A
Sbjct: 352 LLYRLTGNSKYIYRAQRFAEFLFTEEFKAGSRVLESIYSLYEGFSGTVCFLIDLLQPNQA 411
Query: 1494 KFPAFEL 1514
+FP F +
Sbjct: 412 EFPLFSV 418
Database: RefSeqCP
Posted date: Aug 1, 2006 9:25 PM
Number of letters in database: 19,266,565
Number of sequences in database: 33,732
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,126,786
Number of Sequences: 33732
Number of extensions: 1777302
Number of successful extensions: 6291
Number of sequences better than 1.0e-05: 3
Number of HSP's better than 0.0 without gapping: 5216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6265
length of database: 19,266,565
effective HSP length: 108
effective length of database: 15,623,509
effective search space used: 6718108870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0082_H02
(1617 letters)
Database: RefSeqHP
39,411 sequences; 17,774,539 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006046.1| lanthionine synthetase C-like protein 1 [Homo s... 790 0.0
Alignment gi|NP_061167.1| LanC lantibiotic synthetase component C-like 2 ... 475 e-134
Alignment gi|NP_940913.1| LanC lantibiotic synthetase component C-like 3 ... 171 2e-42
>ref|NP_006046.1| lanthionine synthetase C-like protein 1 [Homo sapiens]
Length = 399
Score = 790 bits (2040), Expect = 0.0
Identities = 370/399 (92%), Positives = 388/399 (97%)
Frame = +3
Query: 318 MAQRAFPNPYADFNKSLAEGYFDSAGRLTPEFSQRVNNKIRELLQQMERGLKSADPRDGT 497
MAQRAFPNPYAD+NKSLAEGYFD+AGRLTPEFSQR+ NKIRELLQQMERGLKSADPRDGT
Sbjct: 1 MAQRAFPNPYADYNKSLAEGYFDAAGRLTPEFSQRLTNKIRELLQQMERGLKSADPRDGT 60
Query: 498 AYTGWAGIAVLYLHLYDVFGDPAYLQMAHGYAKQSLNCLTKRSITFLCGDAGPLAVAAVV 677
YTGWAGIAVLYLHLYDVFGDPAYLQ+AHGY KQSLNCLTKRSITFLCGDAGPLAVAAV+
Sbjct: 61 GYTGWAGIAVLYLHLYDVFGDPAYLQLAHGYVKQSLNCLTKRSITFLCGDAGPLAVAAVL 120
Query: 678 HDKMNNEKQAEDCITRLIHLNKIDPHAPNEMLYGRMGYIYALLFVNKNFGVEKIPRSHIQ 857
+ KMNNEKQAEDCITRLIHLNKIDPHAPNEMLYGR+GYIYALLFVNKNFGVEKIP+SHIQ
Sbjct: 121 YHKMNNEKQAEDCITRLIHLNKIDPHAPNEMLYGRIGYIYALLFVNKNFGVEKIPQSHIQ 180
Query: 858 QICETVLTSGENLARKRNFTEKTPLMYEWYQEYYVGAAHGLAGIYYYLMQPSLQVSHAKL 1037
QICET+LTSGENLARKRNFT K+PLMYEWYQEYYVGAAHGLAGIYYYLMQPSLQVS KL
Sbjct: 181 QICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAAHGLAGIYYYLMQPSLQVSQGKL 240
Query: 1038 QSLVKPSVDYVCQLKFPSGNYPPCVDDTRDLLVHWCHGSPGVIYMLIQAYKVFREERYLN 1217
SLVKPSVDYVCQLKFPSGNYPPC+ D RDLLVHWCHG+PGVIYMLIQAYKVFREE+YL
Sbjct: 241 HSLVKPSVDYVCQLKFPSGNYPPCIGDNRDLLVHWCHGAPGVIYMLIQAYKVFREEKYLC 300
Query: 1218 DAYQCADVIWKYGLLKKGYGLCHGTAGNAYAFLTLFNLTQDMKYLYRACKFAEWCLDYGE 1397
DAYQCADVIW+YGLLKKGYGLCHG+AGNAYAFLTL+NLTQDMKYLYRACKFAEWCL+YGE
Sbjct: 301 DAYQCADVIWQYGLLKKGYGLCHGSAGNAYAFLTLYNLTQDMKYLYRACKFAEWCLEYGE 360
Query: 1398 HGCRTPDTPFSLFEGMAGTIYFLADLLVPTKAKFPAFEL 1514
HGCRTPDTPFSLFEGMAGTIYFLADLLVPTKA+FPAFEL
Sbjct: 361 HGCRTPDTPFSLFEGMAGTIYFLADLLVPTKARFPAFEL 399
>ref|NP_061167.1| LanC lantibiotic synthetase component C-like 2 [Homo sapiens]
Length = 450
Score = 475 bits (1223), Expect = e-134
Identities = 224/426 (52%), Positives = 302/426 (70%), Gaps = 27/426 (6%)
Frame = +3
Query: 318 MAQRAFPNPYADFNKS----LAEGYFDSAGRLTP-------------------EFSQRVN 428
M +RAF NP+ D+ + LA G + G + P F +R+
Sbjct: 19 MEERAFVNPFPDYEAAAGALLASGAAEETGCVRPPATTDEPGLPFHQDGKIIHNFIRRIQ 78
Query: 429 NKIRELLQQMERGLKSADPRDGTAYTGWAGIAVLYLHLYDVFGDPAYLQMAHGYAKQSLN 608
KI++LLQQME GLK+ADP D +AYTGW GIA+LYL LY V D YL + Y K++L
Sbjct: 79 TKIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQTYLLRSLDYVKRTLR 138
Query: 609 CLTKRSITFLCGDAGPLAVAAVVHDKMNNEKQAEDCITRLIHLNKI----DPHAPNEMLY 776
L R +TFLCGDAGPLAV AV++ K+ ++ ++++C+T+L+ L + + P+E+LY
Sbjct: 139 NLNGRRVTFLCGDAGPLAVGAVIYHKLRSDCESQECVTKLLQLQRSVVCQESDLPDELLY 198
Query: 777 GRMGYIYALLFVNKNFGVEKIPRSHIQQICETVLTSGENLARKRNFTEKTPLMYEWYQEY 956
GR GY+YALL++N G + S I+++ ++ SG+ L+R+ TE+ PL+Y+W+++
Sbjct: 199 GRAGYLYALLYLNTEIGPGTVCESAIKEVVNAIIESGKTLSREERKTERCPLLYQWHRKQ 258
Query: 957 YVGAAHGLAGIYYYLMQPSLQVSHAKLQSLVKPSVDYVCQLKFPSGNYPPCVDDTRDLLV 1136
YVGAAHG+AGIYY LMQP+ +V L +VKPS+DYV KF SGNYP + + D LV
Sbjct: 259 YVGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYVRHKKFRSGNYPSSLSNETDRLV 318
Query: 1137 HWCHGSPGVIYMLIQAYKVFREERYLNDAYQCADVIWKYGLLKKGYGLCHGTAGNAYAFL 1316
HWCHG+PGVI+ML+QAYKVF+EE+YL +A +C+DVIW+ GLL+KGYG+CHGTAGN Y+FL
Sbjct: 319 HWCHGAPGVIHMLMQAYKVFKEEKYLKEAMECSDVIWQRGLLRKGYGICHGTAGNGYSFL 378
Query: 1317 TLFNLTQDMKYLYRACKFAEWCLDYGEHGCRTPDTPFSLFEGMAGTIYFLADLLVPTKAK 1496
+L+ LTQD KYLYRACKFAEWCLDYG HGCR PD P+SLFEGMAG I+FL+D+L P ++
Sbjct: 379 SLYRLTQDKKYLYRACKFAEWCLDYGAHGCRIPDRPYSLFEGMAGAIHFLSDVLGPETSR 438
Query: 1497 FPAFEL 1514
FPAFEL
Sbjct: 439 FPAFEL 444
>ref|NP_940913.1| LanC lantibiotic synthetase component C-like 3 [Homo sapiens]
Length = 388
Score = 171 bits (432), Expect = 2e-42
Identities = 118/379 (31%), Positives = 186/379 (49%), Gaps = 30/379 (7%)
Frame = +3
Query: 315 MMAQRAFPNPYADFNKSLAEGYFDSAGRLTPEFSQRVNNKIRELLQQMERGLKSADPRDG 494
M +R F N + D+ SL G + A + V I +LQ++ A+ R
Sbjct: 1 MDTKRCFANRFDDYQGSLLAGQCEEA------VAPLVTATIERILQELPPLGGGAEARGA 54
Query: 495 TA---------YTGWAGIAVLYLHLYDVFGDPAYLQMAHGY---AKQSLNCLTKRS---- 626
TA Y G AG+A + LY V P + Y AK+ ++ +
Sbjct: 55 TAGASACQGGLYGGVAGVAYM---LYHVSQSPLFATARERYLRSAKRLIDACARAEEWGE 111
Query: 627 ------ITFLCGDAGPLAVAAVVHDKMNNEKQAED-----CITRLIHLNKIDPHAPNEML 773
FL G AG AVA +V+ + + + + +E+
Sbjct: 112 PDADTRAAFLLGGAGVYAVATLVYHALGRSDYVQPLGKFRALCAVCAPVSFLECGSDELF 171
Query: 774 YGRMGYIYALLFVNKNFGVEKIPRSHIQQICETVLTSGENLARKRNFTEKTPLMYEWYQE 953
GR GY+ A L + + E + + I+ IC+ +L SG+ A K+ + PLMY +Y
Sbjct: 172 VGRAGYLCAALVLKQKLAQEVLTPAQIKSICQAILDSGKQYAIKKR--KPFPLMYSYYGT 229
Query: 954 YYVGAAHGLAGIYYYLMQPSLQVSHAKLQSLVKPSVDYVCQLKFPSGNYPPCVDDT---R 1124
Y+GAAHGL+ I L+ + + + LV SVD++ + + + N+PP + +T
Sbjct: 230 EYLGAAHGLSSILQMLLSYHEHLKPSD-RELVWQSVDFLMEQE-QNCNWPPELGETIERE 287
Query: 1125 DLLVHWCHGSPGVIYMLIQAYKVFREERYLNDAYQCADVIWKYGLLKKGYGLCHGTAGNA 1304
+ LVHWCHG+PG+ Y+ +AY V ++ +YL+ +C ++ W+ GLLKKG G+CHG AG+A
Sbjct: 288 NELVHWCHGAPGIAYLFAKAYLVSKKPQYLDTCIRCGELTWQKGLLKKGPGICHGVAGSA 347
Query: 1305 YAFLTLFNLTQDMKYLYRA 1361
Y FL L+ LT + KY+YRA
Sbjct: 348 YVFLLLYRLTGNSKYIYRA 366
Database: RefSeqHP
Posted date: Aug 2, 2006 12:57 AM
Number of letters in database: 17,774,539
Number of sequences in database: 39,411
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,906,445
Number of Sequences: 39411
Number of extensions: 1780520
Number of successful extensions: 6483
Number of sequences better than 1.0e-05: 3
Number of HSP's better than 0.0 without gapping: 5089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6454
length of database: 17,774,539
effective HSP length: 107
effective length of database: 13,557,562
effective search space used: 5843309222
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqSP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0082_H02
(1617 letters)
Database: RefSeqSP
1040 sequences; 434,620 total letters
Searching...done
***** No hits found ******
Database: RefSeqSP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 434,620
Number of sequences in database: 1040
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,529,078
Number of Sequences: 1040
Number of extensions: 40370
Number of successful extensions: 138
Number of sequences better than 1.0e-05: 0
Number of HSP's better than 0.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 434,620
effective HSP length: 81
effective length of database: 350,380
effective search space used: 160123660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0082_H02
(1617 letters)
Database: RefSeqMP
45,328 sequences; 21,768,885 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_067270.1| LanC (bacterial lantibiotic synthetase componen... 754 0.0
Alignment gi|NP_598498.1| LanC (bacterial lantibiotic synthetase componen... 484 e-136
Alignment gi|XP_984245.1| PREDICTED: similar to LanC (bacterial lantibiot... 303 4e-82
Alignment gi|NP_775590.1| LanC lantibiotic synthetase component C-like 3 ... 209 5e-54
>ref|NP_067270.1| LanC (bacterial lantibiotic synthetase component C)-like 1 [Mus
musculus]
Length = 399
Score = 754 bits (1947), Expect = 0.0
Identities = 352/399 (88%), Positives = 377/399 (94%)
Frame = +3
Query: 318 MAQRAFPNPYADFNKSLAEGYFDSAGRLTPEFSQRVNNKIRELLQQMERGLKSADPRDGT 497
MAQRAFPNPYAD+NKSLAE YFDS GRLTPEFS R+ NKIRELLQQMERGLKSADPRDGT
Sbjct: 1 MAQRAFPNPYADYNKSLAENYFDSTGRLTPEFSHRLTNKIRELLQQMERGLKSADPRDGT 60
Query: 498 AYTGWAGIAVLYLHLYDVFGDPAYLQMAHGYAKQSLNCLTKRSITFLCGDAGPLAVAAVV 677
YTGWAGIAVLYLHL++VFGDPAYLQMAH Y KQSLNCL++RSITFLCGDAGPLAVAAV+
Sbjct: 61 GYTGWAGIAVLYLHLHNVFGDPAYLQMAHSYVKQSLNCLSRRSITFLCGDAGPLAVAAVL 120
Query: 678 HDKMNNEKQAEDCITRLIHLNKIDPHAPNEMLYGRMGYIYALLFVNKNFGVEKIPRSHIQ 857
+ KMN+EKQAE+CITRLIHLNKIDPH PNEMLYGR+GYI+ALLFVNKNFG EKIP+SHIQ
Sbjct: 121 YHKMNSEKQAEECITRLIHLNKIDPHVPNEMLYGRIGYIFALLFVNKNFGEEKIPQSHIQ 180
Query: 858 QICETVLTSGENLARKRNFTEKTPLMYEWYQEYYVGAAHGLAGIYYYLMQPSLQVSHAKL 1037
QICE +LTSGENL+RKRN K+PLMYEWYQEYYVGAAHGLAGIYYYLMQPSLQV+ KL
Sbjct: 181 QICENILTSGENLSRKRNLAAKSPLMYEWYQEYYVGAAHGLAGIYYYLMQPSLQVNQGKL 240
Query: 1038 QSLVKPSVDYVCQLKFPSGNYPPCVDDTRDLLVHWCHGSPGVIYMLIQAYKVFREERYLN 1217
SLVKPSVD+VC+LKFPSGNYPPC+DDTRDLLVHWCHG+PGVIYMLIQAYKVF+EERYL
Sbjct: 241 HSLVKPSVDFVCRLKFPSGNYPPCLDDTRDLLVHWCHGAPGVIYMLIQAYKVFKEERYLC 300
Query: 1218 DAYQCADVIWKYGLLKKGYGLCHGTAGNAYAFLTLFNLTQDMKYLYRACKFAEWCLDYGE 1397
DA QCADVIW+YGLLKKGYGLCHG AGNAYAFL L+NLTQD+KYLYRACKFAEWCLDYGE
Sbjct: 301 DAQQCADVIWQYGLLKKGYGLCHGAAGNAYAFLALYNLTQDLKYLYRACKFAEWCLDYGE 360
Query: 1398 HGCRTPDTPFSLFEGMAGTIYFLADLLVPTKAKFPAFEL 1514
HGCRT DTPFSLFEGMAGTIYFLADLLVPTKAKFPAFEL
Sbjct: 361 HGCRTADTPFSLFEGMAGTIYFLADLLVPTKAKFPAFEL 399
>ref|NP_598498.1| LanC (bacterial lantibiotic synthetase component C)-like 2 [Mus
musculus]
Length = 450
Score = 484 bits (1246), Expect = e-136
Identities = 223/427 (52%), Positives = 308/427 (72%), Gaps = 28/427 (6%)
Frame = +3
Query: 318 MAQRAFPNPYADFNKS-----LAEGYFDSAGR-------------------LTPEFSQRV 425
M +R+FPNP+ D+ + LA G + GR + P F +R+
Sbjct: 18 MEERSFPNPFPDYEAAASAAGLAAGSAEETGRVCPLPTTEDPGLPFHPNGKIVPNFIKRI 77
Query: 426 NNKIRELLQQMERGLKSADPRDGTAYTGWAGIAVLYLHLYDVFGDPAYLQMAHGYAKQSL 605
KI++LLQQME GLK+ADP D +AYTGW GIA+LYL LY V GD YL + Y K++L
Sbjct: 78 QTKIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTGDQTYLLRSLDYVKRTL 137
Query: 606 NCLTKRSITFLCGDAGPLAVAAVVHDKMNNEKQAEDCITRLIHLNKI----DPHAPNEML 773
L+ R +TFLCGDAGPLAV AV++ K+ +E ++++CIT+L+ +++ + P+E+L
Sbjct: 138 RNLSGRRVTFLCGDAGPLAVGAVIYHKLKSECESQECITKLLQMHRTIVCQESELPDELL 197
Query: 774 YGRMGYIYALLFVNKNFGVEKIPRSHIQQICETVLTSGENLARKRNFTEKTPLMYEWYQE 953
YGR GY+YALL++N G + + I+++ ++ SG++L+R+ +E+ PL+Y+W+++
Sbjct: 198 YGRAGYLYALLYLNTEIGPGTVGETAIKEVVSAIIESGKSLSREERKSERCPLLYQWHRK 257
Query: 954 YYVGAAHGLAGIYYYLMQPSLQVSHAKLQSLVKPSVDYVCQLKFPSGNYPPCVDDTRDLL 1133
YVGAAHG+AGIYY LMQP +V L +VKPS+DYV KF SGNYP + + D L
Sbjct: 258 QYVGAAHGMAGIYYMLMQPEAKVDQETLTEMVKPSIDYVRHKKFRSGNYPSSLSNETDRL 317
Query: 1134 VHWCHGSPGVIYMLIQAYKVFREERYLNDAYQCADVIWKYGLLKKGYGLCHGTAGNAYAF 1313
VHWCHG+PGVI++L+QAY+VF+EE+YL +A +C+DVIW+ GLL+KGYG+CHGT+GN Y+F
Sbjct: 318 VHWCHGAPGVIHVLLQAYQVFKEEKYLKEAMECSDVIWQRGLLRKGYGICHGTSGNGYSF 377
Query: 1314 LTLFNLTQDMKYLYRACKFAEWCLDYGEHGCRTPDTPFSLFEGMAGTIYFLADLLVPTKA 1493
L+L+ LTQD KYLYRACKFAEWCLDYG HGCR PD P+SLFEGMAG ++FL+D+LVP A
Sbjct: 378 LSLYRLTQDKKYLYRACKFAEWCLDYGAHGCRIPDRPYSLFEGMAGAVHFLSDILVPETA 437
Query: 1494 KFPAFEL 1514
+FPAFEL
Sbjct: 438 RFPAFEL 444
>ref|XP_984245.1| PREDICTED: similar to LanC (bacterial lantibiotic synthetase
component C)-like 2 [Mus musculus]
Length = 390
Score = 303 bits (775), Expect = 4e-82
Identities = 145/319 (45%), Positives = 212/319 (66%), Gaps = 28/319 (8%)
Frame = +3
Query: 318 MAQRAFPNPYADFNKS-----LAEGYFDSAGR-------------------LTPEFSQRV 425
M +R+FPNP+ D+ + LA G + GR + P F +R+
Sbjct: 18 MEERSFPNPFPDYEAAASAAGLAAGSAEETGRVCPLPTTEDPGLPFHPNGKIVPNFIKRI 77
Query: 426 NNKIRELLQQMERGLKSADPRDGTAYTGWAGIAVLYLHLYDVFGDPAYLQMAHGYAKQSL 605
KI++LLQQME GLK+ADP D +AYTGW GIA+LYL LY V GD YL + Y K++L
Sbjct: 78 QTKIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTGDQTYLLRSLDYVKRTL 137
Query: 606 NCLTKRSITFLCGDAGPLAVAAVVHDKMNNEKQAEDCITRLIHLNKI----DPHAPNEML 773
L+ R +TFLCGDAGPLAV AV++ K+ +E ++++CIT+L+ +++ + P+E+L
Sbjct: 138 RNLSGRRVTFLCGDAGPLAVGAVIYHKLKSECESQECITKLLQMHRTIVCQESELPDELL 197
Query: 774 YGRMGYIYALLFVNKNFGVEKIPRSHIQQICETVLTSGENLARKRNFTEKTPLMYEWYQE 953
YGR GY+YALL++N G + + I+++ ++ SG++L+R+ +E+ PL+Y+W+++
Sbjct: 198 YGRAGYLYALLYLNTEIGPGTVGETAIKEVVSAIIESGKSLSREERKSERCPLLYQWHRK 257
Query: 954 YYVGAAHGLAGIYYYLMQPSLQVSHAKLQSLVKPSVDYVCQLKFPSGNYPPCVDDTRDLL 1133
YVGAAHG+AGIYY LMQP +V L +VKPS+DYV KF SGNYP + + D L
Sbjct: 258 QYVGAAHGMAGIYYMLMQPEAKVDQETLTEMVKPSIDYVRHKKFRSGNYPSSLSNETDRL 317
Query: 1134 VHWCHGSPGVIYMLIQAYK 1190
VHWCHG+PGVI++L+QAY+
Sbjct: 318 VHWCHGAPGVIHVLLQAYQ 336
>ref|NP_775590.1| LanC lantibiotic synthetase component C-like 3 [Mus musculus]
Length = 420
Score = 209 bits (533), Expect = 5e-54
Identities = 141/433 (32%), Positives = 225/433 (51%), Gaps = 33/433 (7%)
Frame = +3
Query: 315 MMAQRAFPNPYADFNKSLAEGYFDSAGRLTPEFSQRVNNKIRELLQQMERGLKSADPRDG 494
M +R F N + D+ SL G + A + V + I +LQ++ A+ R
Sbjct: 1 MDTKRCFANRFDDYQGSLLAGQCEEA------VAPLVTSTIERILQELPPLGGGAEARGA 54
Query: 495 TA---------YTGWAGIAVLYLHLYDVFGDPAYLQMAHGY---AKQSLN-CLTKRS--- 626
T Y+G AG+A + LY V P + Y AK+ ++ CL
Sbjct: 55 TGAGSSCQGGLYSGVAGVAYM---LYHVSQSPLFAAARERYLRFAKRLIDACLRAEEWGE 111
Query: 627 ------ITFLCGDAGPLAVAAVVHDKMNNEKQAED-----CITRLIHLNKIDPHAPNEML 773
FL G AG AVA +V+ + + + + +E+
Sbjct: 112 TDADTRAAFLLGGAGVYAVATLVYHALGRPDYVQPLGKFRALCAVCAPVSFLDCGSDELF 171
Query: 774 YGRMGYIYALLFVNKNFGVEKIPRSHIQQICETVLTSGENLARKRNFTEKTPLMYEWYQE 953
GR GY+ A L + + E + + I+ IC+ +L SG+ A K+ + PLMY +Y
Sbjct: 172 VGRAGYLCAALVLKQKLAQEVLTPTQIKAICQAILDSGKQYALKKR--KPFPLMYSYYGT 229
Query: 954 YYVGAAHGLAGIYYYLM--QPSLQVSHAKLQSLVKPSVDYVCQLKFPSGNYPPCVDDT-- 1121
Y+GAAHGL+ I L+ Q L+ S + LV+ SVD++ + + + N+PP + +T
Sbjct: 230 EYLGAAHGLSSILQMLLSYQEHLKPSD---RELVRQSVDFLMEQE-QNCNWPPELGETIE 285
Query: 1122 -RDLLVHWCHGSPGVIYMLIQAYKVFREERYLNDAYQCADVIWKYGLLKKGYGLCHGTAG 1298
+ LVHWCHG+PG+ Y+ +AY + ++ +YL+ +C ++ W+ GLLKKG G+CHG AG
Sbjct: 286 RENELVHWCHGAPGIAYLFAKAYLISKKPQYLDTCIRCGELTWQKGLLKKGPGICHGVAG 345
Query: 1299 NAYAFLTLFNLTQDMKYLYRACKFAEWCL-DYGEHGCRTPDTPFSLFEGMAGTIYFLADL 1475
+AY FL L+ LT + KY+YRA +FA++ + + G R ++ +SL+EG +GT+ FL DL
Sbjct: 346 SAYVFLLLYRLTGNSKYIYRAQRFAQFLFTEEFKSGSRVLESIYSLYEGFSGTVCFLIDL 405
Query: 1476 LVPTKAKFPAFEL 1514
L P +A+FP F +
Sbjct: 406 LQPNQAEFPLFSV 418
Database: RefSeqMP
Posted date: Aug 2, 2006 12:58 AM
Number of letters in database: 21,768,885
Number of sequences in database: 45,328
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,944,402
Number of Sequences: 45328
Number of extensions: 2025549
Number of successful extensions: 6674
Number of sequences better than 1.0e-05: 4
Number of HSP's better than 0.0 without gapping: 5575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6643
length of database: 21,768,885
effective HSP length: 108
effective length of database: 16,873,461
effective search space used: 7255588230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)