Animal-Genome cDNA OVRM1_0083_B05

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= OVRM1_0083_B05
         (1608 letters)

Database: RefSeqBP 
           33,508 sequences; 16,112,626 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_594059.2| PREDICTED: similar to guanine nucleotide-bindin...   670   0.0  
Alignment   gi|XP_887729.1| PREDICTED: similar to guanine nucleotide-bindin...   670   0.0  
Alignment   gi|XP_874525.1| PREDICTED: similar to guanine nucleotide-bindin...   670   0.0  
Alignment   gi|XP_887708.1| PREDICTED: similar to guanine nucleotide-bindin...   633   0.0  
Alignment   gi|NP_786971.2| GNB1 protein [Bos taurus]                            617   e-177
Alignment   gi|XP_604322.2| PREDICTED: similar to guanine nucleotide-bindin...   615   e-176
Alignment   gi|XP_887703.1| PREDICTED: similar to guanine nucleotide-bindin...   589   e-168
Alignment   gi|XP_591008.2| PREDICTED: similar to guanine nucleotide-bindin...   541   e-154
Alignment   gi|XP_887718.1| PREDICTED: similar to guanine nucleotide-bindin...   540   e-153
Alignment   gi|XP_615433.2| PREDICTED: similar to guanine nucleotide-bindin...   356   3e-98

>ref|XP_594059.2| PREDICTED: similar to guanine nucleotide-binding protein, beta 2
            isoform 1 [Bos taurus]
          Length = 340

 Score =  670 bits (1728), Expect = 0.0
 Identities = 322/323 (99%), Positives = 322/323 (99%)
 Frame = +1

Query: 253  IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG 432
            IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG
Sbjct: 18   IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG 77

Query: 433  KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSR 612
            KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSR
Sbjct: 78   KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSR 137

Query: 613  ELPGHTGYLSCCRFLDDNQIITSSGDTTCTLWDIETGQQTVGFAGHSGDVMSLSLAPDGR 792
            ELPGHTGYLSCCRFLDDNQIITSSGDTTC LWDIETGQQTVGFAGHSGDVMSLSLAPDGR
Sbjct: 138  ELPGHTGYLSCCRFLDDNQIITSSGDTTCALWDIETGQQTVGFAGHSGDVMSLSLAPDGR 197

Query: 793  TFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRA 972
            TFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRA
Sbjct: 198  TFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRA 257

Query: 973  DQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSC 1152
            DQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSC
Sbjct: 258  DQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSC 317

Query: 1153 LGVTDDGMAVATGSWDSFLKIWN 1221
            LGVTDDGMAVATGSWDSFLKIWN
Sbjct: 318  LGVTDDGMAVATGSWDSFLKIWN 340


>ref|XP_887729.1| PREDICTED: similar to guanine nucleotide-binding protein, beta 2
            isoform 6 [Bos taurus]
          Length = 340

 Score =  670 bits (1728), Expect = 0.0
 Identities = 322/323 (99%), Positives = 322/323 (99%)
 Frame = +1

Query: 253  IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG 432
            IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG
Sbjct: 18   IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG 77

Query: 433  KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSR 612
            KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSR
Sbjct: 78   KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSR 137

Query: 613  ELPGHTGYLSCCRFLDDNQIITSSGDTTCTLWDIETGQQTVGFAGHSGDVMSLSLAPDGR 792
            ELPGHTGYLSCCRFLDDNQIITSSGDTTC LWDIETGQQTVGFAGHSGDVMSLSLAPDGR
Sbjct: 138  ELPGHTGYLSCCRFLDDNQIITSSGDTTCALWDIETGQQTVGFAGHSGDVMSLSLAPDGR 197

Query: 793  TFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRA 972
            TFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRA
Sbjct: 198  TFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRA 257

Query: 973  DQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSC 1152
            DQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSC
Sbjct: 258  DQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSC 317

Query: 1153 LGVTDDGMAVATGSWDSFLKIWN 1221
            LGVTDDGMAVATGSWDSFLKIWN
Sbjct: 318  LGVTDDGMAVATGSWDSFLKIWN 340


>ref|XP_874525.1| PREDICTED: similar to guanine nucleotide-binding protein, beta 2
            isoform 2 [Bos taurus]
          Length = 340

 Score =  670 bits (1728), Expect = 0.0
 Identities = 322/323 (99%), Positives = 322/323 (99%)
 Frame = +1

Query: 253  IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG 432
            IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG
Sbjct: 18   IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG 77

Query: 433  KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSR 612
            KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSR
Sbjct: 78   KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSR 137

Query: 613  ELPGHTGYLSCCRFLDDNQIITSSGDTTCTLWDIETGQQTVGFAGHSGDVMSLSLAPDGR 792
            ELPGHTGYLSCCRFLDDNQIITSSGDTTC LWDIETGQQTVGFAGHSGDVMSLSLAPDGR
Sbjct: 138  ELPGHTGYLSCCRFLDDNQIITSSGDTTCALWDIETGQQTVGFAGHSGDVMSLSLAPDGR 197

Query: 793  TFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRA 972
            TFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRA
Sbjct: 198  TFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRA 257

Query: 973  DQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSC 1152
            DQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSC
Sbjct: 258  DQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSC 317

Query: 1153 LGVTDDGMAVATGSWDSFLKIWN 1221
            LGVTDDGMAVATGSWDSFLKIWN
Sbjct: 318  LGVTDDGMAVATGSWDSFLKIWN 340


>ref|XP_887708.1| PREDICTED: similar to guanine nucleotide-binding protein, beta 2
            isoform 4 [Bos taurus]
          Length = 366

 Score =  633 bits (1632), Expect = 0.0
 Identities = 308/322 (95%), Positives = 308/322 (95%), Gaps = 13/322 (4%)
 Frame = +1

Query: 295  QITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH 474
            QITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH
Sbjct: 45   QITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH 104

Query: 475  AIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSRELPGHTG------- 633
            AIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSRELPGHTG       
Sbjct: 105  AIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGEPGPYGG 164

Query: 634  ------YLSCCRFLDDNQIITSSGDTTCTLWDIETGQQTVGFAGHSGDVMSLSLAPDGRT 795
                  YLSCCRFLDDNQIITSSGDTTC LWDIETGQQTVGFAGHSGDVMSLSLAPDGRT
Sbjct: 165  DRGCAGYLSCCRFLDDNQIITSSGDTTCALWDIETGQQTVGFAGHSGDVMSLSLAPDGRT 224

Query: 796  FVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRAD 975
            FVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRAD
Sbjct: 225  FVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRAD 284

Query: 976  QELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSCL 1155
            QELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSCL
Sbjct: 285  QELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSCL 344

Query: 1156 GVTDDGMAVATGSWDSFLKIWN 1221
            GVTDDGMAVATGSWDSFLKIWN
Sbjct: 345  GVTDDGMAVATGSWDSFLKIWN 366


>ref|NP_786971.2| GNB1 protein [Bos taurus]
          Length = 340

 Score =  617 bits (1592), Expect = e-177
 Identities = 291/323 (90%), Positives = 305/323 (94%)
 Frame = +1

Query: 253  IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG 432
            IRDARKAC D+TL+QIT  +DPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG
Sbjct: 18   IRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG 77

Query: 433  KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSR 612
            KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN+VACGGLDNICSIY+LKTREGNVRVSR
Sbjct: 78   KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSR 137

Query: 613  ELPGHTGYLSCCRFLDDNQIITSSGDTTCTLWDIETGQQTVGFAGHSGDVMSLSLAPDGR 792
            EL GHTGYLSCCRFLDDNQI+TSSGDTTC LWDIETGQQT  F GH+GDVMSLSLAPD R
Sbjct: 138  ELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR 197

Query: 793  TFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRA 972
             FVSGACDAS KLWDVR+ MCRQTF GHESDINA+ FFPNG AF TGSDDATCRLFDLRA
Sbjct: 198  LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257

Query: 973  DQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSC 1152
            DQEL+ YSHDNIICGITSV+FS+SGRLLLAGYDDFNCN+WDA+K DRAGVLAGHDNRVSC
Sbjct: 258  DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSC 317

Query: 1153 LGVTDDGMAVATGSWDSFLKIWN 1221
            LGVTDDGMAVATGSWDSFLKIWN
Sbjct: 318  LGVTDDGMAVATGSWDSFLKIWN 340


>ref|XP_604322.2| PREDICTED: similar to guanine nucleotide-binding protein, beta-4
            subunit [Bos taurus]
          Length = 340

 Score =  615 bits (1585), Expect = e-176
 Identities = 288/323 (89%), Positives = 306/323 (94%)
 Frame = +1

Query: 253  IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG 432
            I+DARKAC D+TL QIT+ +D VGRIQMRTRRTLRGHLAKIYAMHWG DSRLLVSASQDG
Sbjct: 18   IQDARKACNDATLVQITSNMDSVGRIQMRTRRTLRGHLAKIYAMHWGYDSRLLVSASQDG 77

Query: 433  KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSR 612
            KLIIWDSYTTNK+HAIPLRSSWVMTCAYAPSGN+VACGGLDNICSIY+LKTREGNVRVSR
Sbjct: 78   KLIIWDSYTTNKMHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSR 137

Query: 613  ELPGHTGYLSCCRFLDDNQIITSSGDTTCTLWDIETGQQTVGFAGHSGDVMSLSLAPDGR 792
            ELPGHTGYLSCCRFLDD+QI+TSSGDTTC LWDIET QQT  F GHSGDVMSLSL+PD R
Sbjct: 138  ELPGHTGYLSCCRFLDDSQIVTSSGDTTCALWDIETAQQTTAFTGHSGDVMSLSLSPDMR 197

Query: 793  TFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRA 972
            TFVSGACDAS KLWD+RD MCRQ+F GH SDINAV+FFPNGYAF TGSDDATCRLFDLRA
Sbjct: 198  TFVSGACDASSKLWDIRDGMCRQSFTGHVSDINAVSFFPNGYAFATGSDDATCRLFDLRA 257

Query: 973  DQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSC 1152
            DQELL+YSHDNIICGITSVAFS+SGRLLLAGYDDFNCN+WD +KGDRAGVLAGHDNRVSC
Sbjct: 258  DQELLLYSHDNIICGITSVAFSKSGRLLLAGYDDFNCNVWDTLKGDRAGVLAGHDNRVSC 317

Query: 1153 LGVTDDGMAVATGSWDSFLKIWN 1221
            LGVTDDGMAVATGSWDSFL+IWN
Sbjct: 318  LGVTDDGMAVATGSWDSFLRIWN 340


>ref|XP_887703.1| PREDICTED: similar to guanine nucleotide-binding protein, beta 2
            isoform 3 [Bos taurus]
          Length = 326

 Score =  589 bits (1518), Expect = e-168
 Identities = 295/336 (87%), Positives = 295/336 (87%), Gaps = 13/336 (3%)
 Frame = +1

Query: 253  IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG 432
            IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG
Sbjct: 18   IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG 77

Query: 433  KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSR 612
            KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSR
Sbjct: 78   KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSR 137

Query: 613  ELPGHT-------------GYLSCCRFLDDNQIITSSGDTTCTLWDIETGQQTVGFAGHS 753
            ELPGHT             GYLSCCRFLDDNQIITSSGDTTC LWDIETGQQTVGFAGHS
Sbjct: 138  ELPGHTGEPGPYGGDRGCAGYLSCCRFLDDNQIITSSGDTTCALWDIETGQQTVGFAGHS 197

Query: 754  GDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTG 933
            GDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVA           
Sbjct: 198  GDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVA----------- 246

Query: 934  SDDATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDR 1113
                            LLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDR
Sbjct: 247  ----------------LLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDR 290

Query: 1114 AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 1221
            AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN
Sbjct: 291  AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 326


>ref|XP_591008.2| PREDICTED: similar to guanine nucleotide-binding protein, beta-3
            subunit [Bos taurus]
          Length = 333

 Score =  541 bits (1394), Expect = e-154
 Identities = 251/312 (80%), Positives = 280/312 (89%)
 Frame = +1

Query: 253  IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG 432
            I DARKAC D+TL ++ +GL+ VGR+QMRTRRTLRGHLAKIYAMHW TDS+LLVSASQDG
Sbjct: 18   IADARKACADTTLAELVSGLEVVGRVQMRTRRTLRGHLAKIYAMHWATDSKLLVSASQDG 77

Query: 433  KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSR 612
            KLI+WD+YTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDN+CSIYSLK+REGNV+VSR
Sbjct: 78   KLIVWDTYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNMCSIYSLKSREGNVKVSR 137

Query: 613  ELPGHTGYLSCCRFLDDNQIITSSGDTTCTLWDIETGQQTVGFAGHSGDVMSLSLAPDGR 792
            EL  HTGYLSCCRFLDDN I+TSSGDTTC LWDIETGQQ   F GH+GD MSL+++PD R
Sbjct: 138  ELSAHTGYLSCCRFLDDNNIVTSSGDTTCALWDIETGQQKTVFVGHTGDCMSLAVSPDFR 197

Query: 793  TFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRA 972
             F+SGACDAS KLWDVR+  CRQTF GHESDINA+ FFPNG A  TGSDDA+CRLFDLRA
Sbjct: 198  LFISGACDASAKLWDVREGTCRQTFTGHESDINAICFFPNGEAICTGSDDASCRLFDLRA 257

Query: 973  DQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSC 1152
            DQEL  Y+H++IICGITSVAFS SGRLL AGYDDFNCN+WD+MK +R G+L+GHDNRVSC
Sbjct: 258  DQELTTYAHESIICGITSVAFSLSGRLLFAGYDDFNCNVWDSMKCERVGILSGHDNRVSC 317

Query: 1153 LGVTDDGMAVAT 1188
            LGVT DGMAVAT
Sbjct: 318  LGVTADGMAVAT 329



 Score = 70.1 bits (170), Expect = 5e-12
 Identities = 49/213 (23%), Positives = 91/213 (42%), Gaps = 5/213 (2%)
 Frame = +1

Query: 598  VRVSRELPGHTGYLSCCRFLDDNQIITS-SGDTTCTLWDIETGQQTVGFAGHSGDVMSLS 774
            +R  R L GH   +    +  D++++ S S D    +WD  T  +       S  VM+ +
Sbjct: 45   MRTRRTLRGHLAKIYAMHWATDSKLLVSASQDGKLIVWDTYTTNKVHAIPLRSSWVMTCA 104

Query: 775  LAPDGRTFVSGACDASIKLWDVRDS----MCRQTFIGHESDINAVAFFPNGYAFTTGSDD 942
             AP G     G  D    ++ ++         +    H   ++   F  +     T S D
Sbjct: 105  YAPSGNFVACGGLDNMCSIYSLKSREGNVKVSRELSAHTGYLSCCRFLDDNN-IVTSSGD 163

Query: 943  ATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGV 1122
             TC L+D+   Q+  ++      C   S+A S   RL ++G  D +  +WD  +G     
Sbjct: 164  TTCALWDIETGQQKTVFVGHTGDC--MSLAVSPDFRLFISGACDASAKLWDVREGTCRQT 221

Query: 1123 LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 1221
              GH++ ++ +    +G A+ TGS D+  ++++
Sbjct: 222  FTGHESDINAICFFPNGEAICTGSDDASCRLFD 254


>ref|XP_887718.1| PREDICTED: similar to guanine nucleotide-binding protein, beta 2
            isoform 5 [Bos taurus]
          Length = 296

 Score =  540 bits (1392), Expect = e-153
 Identities = 272/323 (84%), Positives = 272/323 (84%)
 Frame = +1

Query: 253  IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG 432
            IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG
Sbjct: 18   IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG 77

Query: 433  KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSR 612
            KLIIWDSYTTNKV A P                                           
Sbjct: 78   KLIIWDSYTTNKVGAAPA------------------------------------------ 95

Query: 613  ELPGHTGYLSCCRFLDDNQIITSSGDTTCTLWDIETGQQTVGFAGHSGDVMSLSLAPDGR 792
              P   GYLSCCRFLDDNQIITSSGDTTC LWDIETGQQTVGFAGHSGDVMSLSLAPDGR
Sbjct: 96   --PLPPGYLSCCRFLDDNQIITSSGDTTCALWDIETGQQTVGFAGHSGDVMSLSLAPDGR 153

Query: 793  TFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRA 972
            TFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRA
Sbjct: 154  TFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRA 213

Query: 973  DQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSC 1152
            DQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSC
Sbjct: 214  DQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSC 273

Query: 1153 LGVTDDGMAVATGSWDSFLKIWN 1221
            LGVTDDGMAVATGSWDSFLKIWN
Sbjct: 274  LGVTDDGMAVATGSWDSFLKIWN 296


>ref|XP_615433.2| PREDICTED: similar to guanine nucleotide-binding protein, beta-5
            subunit isoform 1 [Bos taurus]
          Length = 353

 Score =  356 bits (914), Expect = 3e-98
 Identities = 171/327 (52%), Positives = 222/327 (67%), Gaps = 5/327 (1%)
 Frame = +1

Query: 253  IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG 432
            + + R    D  L Q+   ++ +G+  M+TRRTL+GH  K+  M W  D R LVS+SQDG
Sbjct: 26   LEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRLVSSSQDG 85

Query: 433  KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLK--TREGNVRV 606
            K+I+WDS+TTNK HA+ +  +WVM CAYAPSG  +ACGGLDN CS+Y L     E     
Sbjct: 86   KVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAK 145

Query: 607  SRELPGHTGYLSCCRFLD-DNQIITSSGDTTCTLWDIETGQQTVGFAGHSGDVMSLSLAP 783
             + +  HT YLS C F + D QI+T+SGD TC LWD+E+GQ    F GH  DV+ L LAP
Sbjct: 146  KKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAP 205

Query: 784  D--GRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRL 957
               G TFVSG CD    +WD+R   C Q F  HESDIN+V ++P+G AF +GSDDATCRL
Sbjct: 206  SETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDINSVRYYPSGDAFASGSDDATCRL 265

Query: 958  FDLRADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHD 1137
            +DLRAD+E+ +YS ++II G +SV FS SGRLL AGY+D+  N+WD +KG R  +L GH+
Sbjct: 266  YDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHE 325

Query: 1138 NRVSCLGVTDDGMAVATGSWDSFLKIW 1218
            NRVS L V+ DG A  +GSWD  L++W
Sbjct: 326  NRVSTLRVSPDGTAFCSGSWDHTLRVW 352


  Database: RefSeqBP
    Posted date:  Aug 1, 2006  7:14 PM
  Number of letters in database: 16,112,626
  Number of sequences in database:  33,508
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,820,221
Number of Sequences: 33508
Number of extensions: 1719308
Number of successful extensions: 11223
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 6251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9726
length of database: 16,112,626
effective HSP length: 106
effective length of database: 12,560,778
effective search space used: 5388573762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= OVRM1_0083_B05
         (1608 letters)

Database: RefSeqCP 
           33,732 sequences; 19,266,565 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_859294.1| PREDICTED: similar to guanine nucleotide-bindin...   670   0.0  
Alignment   gi|XP_536861.2| PREDICTED: similar to guanine nucleotide-bindin...   670   0.0  
Alignment   gi|XP_849538.1| PREDICTED: similar to guanine nucleotide-bindin...   670   0.0  
Alignment   gi|XP_859256.1| PREDICTED: similar to guanine nucleotide-bindin...   661   0.0  
Alignment   gi|NP_001003236.1| guanine nucleotide-binding protein, beta-1 s...   617   e-177
Alignment   gi|XP_545211.1| PREDICTED: similar to guanine nucleotide-bindin...   613   e-175
Alignment   gi|XP_859132.1| PREDICTED: similar to guanine nucleotide-bindin...   587   e-167
Alignment   gi|NP_001003004.1| guanine nucleotide-binding protein, beta-3 s...   567   e-161
Alignment   gi|XP_855554.1| PREDICTED: transducin beta-3-subunit [Canis fam...   566   e-161
Alignment   gi|XP_859172.1| PREDICTED: similar to guanine nucleotide-bindin...   543   e-154

>ref|XP_859294.1| PREDICTED: similar to guanine nucleotide-binding protein, beta 2
            isoform 8 [Canis familiaris]
          Length = 340

 Score =  670 bits (1728), Expect = 0.0
 Identities = 322/323 (99%), Positives = 322/323 (99%)
 Frame = +1

Query: 253  IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG 432
            IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG
Sbjct: 18   IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG 77

Query: 433  KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSR 612
            KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSR
Sbjct: 78   KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSR 137

Query: 613  ELPGHTGYLSCCRFLDDNQIITSSGDTTCTLWDIETGQQTVGFAGHSGDVMSLSLAPDGR 792
            ELPGHTGYLSCCRFLDDNQIITSSGDTTC LWDIETGQQTVGFAGHSGDVMSLSLAPDGR
Sbjct: 138  ELPGHTGYLSCCRFLDDNQIITSSGDTTCALWDIETGQQTVGFAGHSGDVMSLSLAPDGR 197

Query: 793  TFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRA 972
            TFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRA
Sbjct: 198  TFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRA 257

Query: 973  DQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSC 1152
            DQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSC
Sbjct: 258  DQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSC 317

Query: 1153 LGVTDDGMAVATGSWDSFLKIWN 1221
            LGVTDDGMAVATGSWDSFLKIWN
Sbjct: 318  LGVTDDGMAVATGSWDSFLKIWN 340


>ref|XP_536861.2| PREDICTED: similar to guanine nucleotide-binding protein, beta 2
            isoform 1 [Canis familiaris]
          Length = 340

 Score =  670 bits (1728), Expect = 0.0
 Identities = 322/323 (99%), Positives = 322/323 (99%)
 Frame = +1

Query: 253  IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG 432
            IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG
Sbjct: 18   IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG 77

Query: 433  KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSR 612
            KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSR
Sbjct: 78   KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSR 137

Query: 613  ELPGHTGYLSCCRFLDDNQIITSSGDTTCTLWDIETGQQTVGFAGHSGDVMSLSLAPDGR 792
            ELPGHTGYLSCCRFLDDNQIITSSGDTTC LWDIETGQQTVGFAGHSGDVMSLSLAPDGR
Sbjct: 138  ELPGHTGYLSCCRFLDDNQIITSSGDTTCALWDIETGQQTVGFAGHSGDVMSLSLAPDGR 197

Query: 793  TFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRA 972
            TFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRA
Sbjct: 198  TFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRA 257

Query: 973  DQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSC 1152
            DQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSC
Sbjct: 258  DQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSC 317

Query: 1153 LGVTDDGMAVATGSWDSFLKIWN 1221
            LGVTDDGMAVATGSWDSFLKIWN
Sbjct: 318  LGVTDDGMAVATGSWDSFLKIWN 340


>ref|XP_849538.1| PREDICTED: similar to guanine nucleotide-binding protein, beta 2
            isoform 2 [Canis familiaris]
          Length = 340

 Score =  670 bits (1728), Expect = 0.0
 Identities = 322/323 (99%), Positives = 322/323 (99%)
 Frame = +1

Query: 253  IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG 432
            IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG
Sbjct: 18   IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG 77

Query: 433  KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSR 612
            KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSR
Sbjct: 78   KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSR 137

Query: 613  ELPGHTGYLSCCRFLDDNQIITSSGDTTCTLWDIETGQQTVGFAGHSGDVMSLSLAPDGR 792
            ELPGHTGYLSCCRFLDDNQIITSSGDTTC LWDIETGQQTVGFAGHSGDVMSLSLAPDGR
Sbjct: 138  ELPGHTGYLSCCRFLDDNQIITSSGDTTCALWDIETGQQTVGFAGHSGDVMSLSLAPDGR 197

Query: 793  TFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRA 972
            TFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRA
Sbjct: 198  TFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRA 257

Query: 973  DQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSC 1152
            DQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSC
Sbjct: 258  DQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSC 317

Query: 1153 LGVTDDGMAVATGSWDSFLKIWN 1221
            LGVTDDGMAVATGSWDSFLKIWN
Sbjct: 318  LGVTDDGMAVATGSWDSFLKIWN 340


>ref|XP_859256.1| PREDICTED: similar to guanine nucleotide-binding protein, beta 2
            isoform 7 [Canis familiaris]
          Length = 351

 Score =  661 bits (1706), Expect = 0.0
 Identities = 322/334 (96%), Positives = 322/334 (96%), Gaps = 11/334 (3%)
 Frame = +1

Query: 253  IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG 432
            IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG
Sbjct: 18   IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG 77

Query: 433  KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSR 612
            KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSR
Sbjct: 78   KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSR 137

Query: 613  ELPGHTG-----------YLSCCRFLDDNQIITSSGDTTCTLWDIETGQQTVGFAGHSGD 759
            ELPGHTG           YLSCCRFLDDNQIITSSGDTTC LWDIETGQQTVGFAGHSGD
Sbjct: 138  ELPGHTGERDLAGLWRCRYLSCCRFLDDNQIITSSGDTTCALWDIETGQQTVGFAGHSGD 197

Query: 760  VMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSD 939
            VMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSD
Sbjct: 198  VMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSD 257

Query: 940  DATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAG 1119
            DATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAG
Sbjct: 258  DATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAG 317

Query: 1120 VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 1221
            VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN
Sbjct: 318  VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351


>ref|NP_001003236.1| guanine nucleotide-binding protein, beta-1 subunit [Canis familiaris]
          Length = 340

 Score =  617 bits (1592), Expect = e-177
 Identities = 291/323 (90%), Positives = 305/323 (94%)
 Frame = +1

Query: 253  IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG 432
            IRDARKAC D+TL+QIT  +DPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG
Sbjct: 18   IRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG 77

Query: 433  KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSR 612
            KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN+VACGGLDNICSIY+LKTREGNVRVSR
Sbjct: 78   KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSR 137

Query: 613  ELPGHTGYLSCCRFLDDNQIITSSGDTTCTLWDIETGQQTVGFAGHSGDVMSLSLAPDGR 792
            EL GHTGYLSCCRFLDDNQI+TSSGDTTC LWDIETGQQT  F GH+GDVMSLSLAPD R
Sbjct: 138  ELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR 197

Query: 793  TFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRA 972
             FVSGACDAS KLWDVR+ MCRQTF GHESDINA+ FFPNG AF TGSDDATCRLFDLRA
Sbjct: 198  LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257

Query: 973  DQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSC 1152
            DQEL+ YSHDNIICGITSV+FS+SGRLLLAGYDDFNCN+WDA+K DRAGVLAGHDNRVSC
Sbjct: 258  DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSC 317

Query: 1153 LGVTDDGMAVATGSWDSFLKIWN 1221
            LGVTDDGMAVATGSWDSFLKIWN
Sbjct: 318  LGVTDDGMAVATGSWDSFLKIWN 340


>ref|XP_545211.1| PREDICTED: similar to guanine nucleotide-binding protein, beta-4
            subunit [Canis familiaris]
          Length = 340

 Score =  613 bits (1582), Expect = e-175
 Identities = 288/323 (89%), Positives = 306/323 (94%)
 Frame = +1

Query: 253  IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG 432
            I+DARKAC D+TL QIT+ +D VGRIQMRTRRTLRGHLAKIYAMHWG DSRLLVSASQDG
Sbjct: 18   IQDARKACNDATLIQITSNMDSVGRIQMRTRRTLRGHLAKIYAMHWGYDSRLLVSASQDG 77

Query: 433  KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSR 612
            KLIIWDSYTTNK+HAIPLRSSWVMTCAYAPSGN+VACGGLDNICSIY+LKTREGNVRVSR
Sbjct: 78   KLIIWDSYTTNKMHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSR 137

Query: 613  ELPGHTGYLSCCRFLDDNQIITSSGDTTCTLWDIETGQQTVGFAGHSGDVMSLSLAPDGR 792
            ELPGHTGYLSCCRFLDD+QI+TSSGDTTC LWDIET QQT  F GHSGDVMSLSL+PD R
Sbjct: 138  ELPGHTGYLSCCRFLDDSQIVTSSGDTTCALWDIETAQQTTTFTGHSGDVMSLSLSPDMR 197

Query: 793  TFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRA 972
            TFVSGACDAS KLWD+RD MCRQ+F GH SDINAV+FFPNGYAF TGSDDATCRLFDLRA
Sbjct: 198  TFVSGACDASSKLWDIRDGMCRQSFTGHVSDINAVSFFPNGYAFATGSDDATCRLFDLRA 257

Query: 973  DQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSC 1152
            DQELL+YSHDNIICGITSVAFS+SGRLLLAGYDDFNCN+WD +KGDRAGVLAGHDNRVSC
Sbjct: 258  DQELLLYSHDNIICGITSVAFSKSGRLLLAGYDDFNCNVWDTLKGDRAGVLAGHDNRVSC 317

Query: 1153 LGVTDDGMAVATGSWDSFLKIWN 1221
            LGVTDDGMAVATGSWDSFL+IWN
Sbjct: 318  LGVTDDGMAVATGSWDSFLRIWN 340


>ref|XP_859132.1| PREDICTED: similar to guanine nucleotide-binding protein, beta 2
            isoform 4 [Canis familiaris]
          Length = 332

 Score =  587 bits (1512), Expect = e-167
 Identities = 295/342 (86%), Positives = 295/342 (86%), Gaps = 19/342 (5%)
 Frame = +1

Query: 253  IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG 432
            IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG
Sbjct: 18   IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG 77

Query: 433  KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSR 612
            KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSR
Sbjct: 78   KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSR 137

Query: 613  ELPGHT-------------------GYLSCCRFLDDNQIITSSGDTTCTLWDIETGQQTV 735
            ELPGHT                   GYLSCCRFLDDNQIITSSGDTTC LWDIETGQQTV
Sbjct: 138  ELPGHTGGGAVLPAVRDSADQPLSPGYLSCCRFLDDNQIITSSGDTTCALWDIETGQQTV 197

Query: 736  GFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNG 915
            GFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVA     
Sbjct: 198  GFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVA----- 252

Query: 916  YAFTTGSDDATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWD 1095
                                  LLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWD
Sbjct: 253  ----------------------LLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWD 290

Query: 1096 AMKGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 1221
            AMKGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN
Sbjct: 291  AMKGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 332


>ref|NP_001003004.1| guanine nucleotide-binding protein, beta-3 subunit [Canis familiaris]
          Length = 340

 Score =  567 bits (1461), Expect = e-161
 Identities = 262/323 (81%), Positives = 291/323 (90%)
 Frame = +1

Query: 253  IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG 432
            I DARKAC D+TL ++ +GL+ VGR+QMRTRRTLRGHLAKIYAMHW TDS+LLVSASQDG
Sbjct: 18   IADARKACADTTLAELVSGLEVVGRVQMRTRRTLRGHLAKIYAMHWATDSKLLVSASQDG 77

Query: 433  KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSR 612
            KLI+WD+YTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDN+CSIYSLK+REGNV+VSR
Sbjct: 78   KLIVWDTYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNMCSIYSLKSREGNVKVSR 137

Query: 613  ELPGHTGYLSCCRFLDDNQIITSSGDTTCTLWDIETGQQTVGFAGHSGDVMSLSLAPDGR 792
            EL  HTGYLSCCRFLDDN I+TSSGDTTC LWDIETGQQ   F GH+GD MSL+++PD +
Sbjct: 138  ELSAHTGYLSCCRFLDDNNIVTSSGDTTCALWDIETGQQKTVFVGHTGDCMSLAVSPDFK 197

Query: 793  TFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRA 972
             F+SGACDAS KLWDVR+  CRQTF GHESDINA+ FFPNG A  TGSDDA+CRLFDLRA
Sbjct: 198  LFISGACDASAKLWDVREGTCRQTFTGHESDINAICFFPNGEAICTGSDDASCRLFDLRA 257

Query: 973  DQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSC 1152
            DQEL  YS ++IICGITSVAFS SGRLL AGYDDFNCNIWD+MKG+R G+L+GHDNRVSC
Sbjct: 258  DQELTAYSDESIICGITSVAFSLSGRLLFAGYDDFNCNIWDSMKGERVGILSGHDNRVSC 317

Query: 1153 LGVTDDGMAVATGSWDSFLKIWN 1221
            LGVT DGMAVATGSWDSFLK+WN
Sbjct: 318  LGVTADGMAVATGSWDSFLKVWN 340


>ref|XP_855554.1| PREDICTED: transducin beta-3-subunit [Canis familiaris]
          Length = 340

 Score =  566 bits (1458), Expect = e-161
 Identities = 262/323 (81%), Positives = 290/323 (89%)
 Frame = +1

Query: 253  IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG 432
            I DARKAC D TL ++ +GL+ VGR+QMRTRRTLRGHLAKIYAMHW TDS+LLVSASQDG
Sbjct: 18   IADARKACADITLAELVSGLEVVGRVQMRTRRTLRGHLAKIYAMHWATDSKLLVSASQDG 77

Query: 433  KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSR 612
            KLI+WD+YTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDN+CSIYSLK+REGNV+VSR
Sbjct: 78   KLIVWDTYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNMCSIYSLKSREGNVKVSR 137

Query: 613  ELPGHTGYLSCCRFLDDNQIITSSGDTTCTLWDIETGQQTVGFAGHSGDVMSLSLAPDGR 792
            EL  HTGYLSCCRFLDDN I+TSSGDTTC LWDIETGQQ   F GH+GD MSL+++PD +
Sbjct: 138  ELSAHTGYLSCCRFLDDNNIVTSSGDTTCALWDIETGQQKTVFVGHTGDCMSLAVSPDFK 197

Query: 793  TFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRA 972
             F+SGACDAS KLWDVR+  CRQTF GHESDINA+ FFPNG A  TGSDDA+CRLFDLRA
Sbjct: 198  LFISGACDASAKLWDVREGTCRQTFTGHESDINAICFFPNGEAICTGSDDASCRLFDLRA 257

Query: 973  DQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSC 1152
            DQEL  YS ++IICGITSVAFS SGRLL AGYDDFNCNIWD+MKG+R G+L+GHDNRVSC
Sbjct: 258  DQELTAYSDESIICGITSVAFSLSGRLLFAGYDDFNCNIWDSMKGERVGILSGHDNRVSC 317

Query: 1153 LGVTDDGMAVATGSWDSFLKIWN 1221
            LGVT DGMAVATGSWDSFLK+WN
Sbjct: 318  LGVTADGMAVATGSWDSFLKVWN 340


>ref|XP_859172.1| PREDICTED: similar to guanine nucleotide-binding protein, beta 2
            isoform 5 [Canis familiaris]
          Length = 299

 Score =  543 bits (1398), Expect = e-154
 Identities = 272/323 (84%), Positives = 274/323 (84%)
 Frame = +1

Query: 253  IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG 432
            IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG
Sbjct: 18   IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG 77

Query: 433  KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSR 612
            KLIIWDSYTTNKV  +P  + W                                      
Sbjct: 78   KLIIWDSYTTNKVEVMP-EAGWGRA----------------------------------- 101

Query: 613  ELPGHTGYLSCCRFLDDNQIITSSGDTTCTLWDIETGQQTVGFAGHSGDVMSLSLAPDGR 792
                 TGYLSCCRFLDDNQIITSSGDTTC LWDIETGQQTVGFAGHSGDVMSLSLAPDGR
Sbjct: 102  -----TGYLSCCRFLDDNQIITSSGDTTCALWDIETGQQTVGFAGHSGDVMSLSLAPDGR 156

Query: 793  TFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRA 972
            TFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRA
Sbjct: 157  TFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRA 216

Query: 973  DQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSC 1152
            DQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSC
Sbjct: 217  DQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSC 276

Query: 1153 LGVTDDGMAVATGSWDSFLKIWN 1221
            LGVTDDGMAVATGSWDSFLKIWN
Sbjct: 277  LGVTDDGMAVATGSWDSFLKIWN 299


  Database: RefSeqCP
    Posted date:  Aug 1, 2006  9:25 PM
  Number of letters in database: 19,266,565
  Number of sequences in database:  33,732
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,704,026
Number of Sequences: 33732
Number of extensions: 2015607
Number of successful extensions: 12805
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 7083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11183
length of database: 19,266,565
effective HSP length: 108
effective length of database: 15,623,509
effective search space used: 6671238343
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= OVRM1_0083_B05
         (1608 letters)

Database: RefSeqHP 
           39,411 sequences; 17,774,539 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_005264.2| guanine nucleotide-binding protein, beta-2 subu...   670   0.0  
Alignment   gi|NP_002065.1| guanine nucleotide-binding protein, beta-1 subu...   617   e-177
Alignment   gi|NP_067642.1| guanine nucleotide-binding protein, beta-4 subu...   614   e-176
Alignment   gi|NP_002066.1| guanine nucleotide-binding protein, beta-3 subu...   566   e-161
Alignment   gi|NP_006569.1| guanine nucleotide-binding protein, beta-5 subu...   355   5e-98
Alignment   gi|NP_057278.2| guanine nucleotide-binding protein, beta-5 subu...   355   5e-98
Alignment   gi|NP_004688.2| PRP4 pre-mRNA processing factor 4 homolog [Homo...   119   6e-27
Alignment   gi|NP_849143.1| hypothetical protein LOC164781 [Homo sapiens]        119   6e-27
Alignment   gi|NP_008882.2| TBP-associated factor 5 [Homo sapiens]               112   9e-25
Alignment   gi|NP_438172.1| WD repeat domain 5 [Homo sapiens]                    111   2e-24

>ref|NP_005264.2| guanine nucleotide-binding protein, beta-2 subunit [Homo sapiens]
          Length = 340

 Score =  670 bits (1728), Expect = 0.0
 Identities = 322/323 (99%), Positives = 322/323 (99%)
 Frame = +1

Query: 253  IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG 432
            IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG
Sbjct: 18   IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG 77

Query: 433  KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSR 612
            KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSR
Sbjct: 78   KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSR 137

Query: 613  ELPGHTGYLSCCRFLDDNQIITSSGDTTCTLWDIETGQQTVGFAGHSGDVMSLSLAPDGR 792
            ELPGHTGYLSCCRFLDDNQIITSSGDTTC LWDIETGQQTVGFAGHSGDVMSLSLAPDGR
Sbjct: 138  ELPGHTGYLSCCRFLDDNQIITSSGDTTCALWDIETGQQTVGFAGHSGDVMSLSLAPDGR 197

Query: 793  TFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRA 972
            TFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRA
Sbjct: 198  TFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRA 257

Query: 973  DQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSC 1152
            DQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSC
Sbjct: 258  DQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSC 317

Query: 1153 LGVTDDGMAVATGSWDSFLKIWN 1221
            LGVTDDGMAVATGSWDSFLKIWN
Sbjct: 318  LGVTDDGMAVATGSWDSFLKIWN 340


>ref|NP_002065.1| guanine nucleotide-binding protein, beta-1 subunit [Homo sapiens]
          Length = 340

 Score =  617 bits (1592), Expect = e-177
 Identities = 291/323 (90%), Positives = 305/323 (94%)
 Frame = +1

Query: 253  IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG 432
            IRDARKAC D+TL+QIT  +DPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG
Sbjct: 18   IRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG 77

Query: 433  KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSR 612
            KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN+VACGGLDNICSIY+LKTREGNVRVSR
Sbjct: 78   KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSR 137

Query: 613  ELPGHTGYLSCCRFLDDNQIITSSGDTTCTLWDIETGQQTVGFAGHSGDVMSLSLAPDGR 792
            EL GHTGYLSCCRFLDDNQI+TSSGDTTC LWDIETGQQT  F GH+GDVMSLSLAPD R
Sbjct: 138  ELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR 197

Query: 793  TFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRA 972
             FVSGACDAS KLWDVR+ MCRQTF GHESDINA+ FFPNG AF TGSDDATCRLFDLRA
Sbjct: 198  LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257

Query: 973  DQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSC 1152
            DQEL+ YSHDNIICGITSV+FS+SGRLLLAGYDDFNCN+WDA+K DRAGVLAGHDNRVSC
Sbjct: 258  DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSC 317

Query: 1153 LGVTDDGMAVATGSWDSFLKIWN 1221
            LGVTDDGMAVATGSWDSFLKIWN
Sbjct: 318  LGVTDDGMAVATGSWDSFLKIWN 340


>ref|NP_067642.1| guanine nucleotide-binding protein, beta-4 subunit [Homo sapiens]
          Length = 340

 Score =  614 bits (1583), Expect = e-176
 Identities = 288/323 (89%), Positives = 306/323 (94%)
 Frame = +1

Query: 253  IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG 432
            I+DARKAC D+TL QIT+ +D VGRIQMRTRRTLRGHLAKIYAMHWG DSRLLVSASQDG
Sbjct: 18   IQDARKACNDATLVQITSNMDSVGRIQMRTRRTLRGHLAKIYAMHWGYDSRLLVSASQDG 77

Query: 433  KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSR 612
            KLIIWDSYTTNK+HAIPLRSSWVMTCAYAPSGN+VACGGLDNICSIY+LKTREGNVRVSR
Sbjct: 78   KLIIWDSYTTNKMHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSR 137

Query: 613  ELPGHTGYLSCCRFLDDNQIITSSGDTTCTLWDIETGQQTVGFAGHSGDVMSLSLAPDGR 792
            ELPGHTGYLSCCRFLDD+QI+TSSGDTTC LWDIET QQT  F GHSGDVMSLSL+PD R
Sbjct: 138  ELPGHTGYLSCCRFLDDSQIVTSSGDTTCALWDIETAQQTTTFTGHSGDVMSLSLSPDMR 197

Query: 793  TFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRA 972
            TFVSGACDAS KLWD+RD MCRQ+F GH SDINAV+FFPNGYAF TGSDDATCRLFDLRA
Sbjct: 198  TFVSGACDASSKLWDIRDGMCRQSFTGHVSDINAVSFFPNGYAFATGSDDATCRLFDLRA 257

Query: 973  DQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSC 1152
            DQELL+YSHDNIICGITSVAFS+SGRLLLAGYDDFNCN+WD +KGDRAGVLAGHDNRVSC
Sbjct: 258  DQELLLYSHDNIICGITSVAFSKSGRLLLAGYDDFNCNVWDTLKGDRAGVLAGHDNRVSC 317

Query: 1153 LGVTDDGMAVATGSWDSFLKIWN 1221
            LGVTDDGMAVATGSWDSFL+IWN
Sbjct: 318  LGVTDDGMAVATGSWDSFLRIWN 340


>ref|NP_002066.1| guanine nucleotide-binding protein, beta-3 subunit [Homo sapiens]
          Length = 340

 Score =  566 bits (1458), Expect = e-161
 Identities = 261/323 (80%), Positives = 290/323 (89%)
 Frame = +1

Query: 253  IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG 432
            I DARKAC D TL ++ +GL+ VGR+QMRTRRTLRGHLAKIYAMHW TDS+LLVSASQDG
Sbjct: 18   IADARKACADVTLAELVSGLEVVGRVQMRTRRTLRGHLAKIYAMHWATDSKLLVSASQDG 77

Query: 433  KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSR 612
            KLI+WDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDN+CSIY+LK+REGNV+VSR
Sbjct: 78   KLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNMCSIYNLKSREGNVKVSR 137

Query: 613  ELPGHTGYLSCCRFLDDNQIITSSGDTTCTLWDIETGQQTVGFAGHSGDVMSLSLAPDGR 792
            EL  HTGYLSCCRFLDDN I+TSSGDTTC LWDIETGQQ   F GH+GD MSL+++PD  
Sbjct: 138  ELSAHTGYLSCCRFLDDNNIVTSSGDTTCALWDIETGQQKTVFVGHTGDCMSLAVSPDFN 197

Query: 793  TFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRA 972
             F+SGACDAS KLWDVR+  CRQTF GHESDINA+ FFPNG A  TGSDDA+CRLFDLRA
Sbjct: 198  LFISGACDASAKLWDVREGTCRQTFTGHESDINAICFFPNGEAICTGSDDASCRLFDLRA 257

Query: 973  DQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSC 1152
            DQEL+ +SH++IICGITSVAFS SGRLL AGYDDFNCN+WD+MK +R G+L+GHDNRVSC
Sbjct: 258  DQELICFSHESIICGITSVAFSLSGRLLFAGYDDFNCNVWDSMKSERVGILSGHDNRVSC 317

Query: 1153 LGVTDDGMAVATGSWDSFLKIWN 1221
            LGVT DGMAVATGSWDSFLKIWN
Sbjct: 318  LGVTADGMAVATGSWDSFLKIWN 340


>ref|NP_006569.1| guanine nucleotide-binding protein, beta-5 subunit isoform a [Homo
            sapiens]
          Length = 353

 Score =  355 bits (912), Expect = 5e-98
 Identities = 170/327 (51%), Positives = 222/327 (67%), Gaps = 5/327 (1%)
 Frame = +1

Query: 253  IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG 432
            + + R    D  L Q+   ++ +G+  M+TRRTL+GH  K+  M W  D R +VS+SQDG
Sbjct: 26   LEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDG 85

Query: 433  KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLK--TREGNVRV 606
            K+I+WDS+TTNK HA+ +  +WVM CAYAPSG  +ACGGLDN CS+Y L     E     
Sbjct: 86   KVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAK 145

Query: 607  SRELPGHTGYLSCCRFLD-DNQIITSSGDTTCTLWDIETGQQTVGFAGHSGDVMSLSLAP 783
             + +  HT YLS C F + D QI+T+SGD TC LWD+E+GQ    F GH  DV+ L LAP
Sbjct: 146  KKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAP 205

Query: 784  D--GRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRL 957
               G TFVSG CD    +WD+R   C Q F  HESDIN+V ++P+G AF +GSDDATCRL
Sbjct: 206  SETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDINSVRYYPSGDAFASGSDDATCRL 265

Query: 958  FDLRADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHD 1137
            +DLRAD+E+ +YS ++II G +SV FS SGRLL AGY+D+  N+WD +KG R  +L GH+
Sbjct: 266  YDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHE 325

Query: 1138 NRVSCLGVTDDGMAVATGSWDSFLKIW 1218
            NRVS L V+ DG A  +GSWD  L++W
Sbjct: 326  NRVSTLRVSPDGTAFCSGSWDHTLRVW 352


>ref|NP_057278.2| guanine nucleotide-binding protein, beta-5 subunit isoform b [Homo
            sapiens]
          Length = 395

 Score =  355 bits (912), Expect = 5e-98
 Identities = 170/327 (51%), Positives = 222/327 (67%), Gaps = 5/327 (1%)
 Frame = +1

Query: 253  IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG 432
            + + R    D  L Q+   ++ +G+  M+TRRTL+GH  K+  M W  D R +VS+SQDG
Sbjct: 68   LEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDG 127

Query: 433  KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLK--TREGNVRV 606
            K+I+WDS+TTNK HA+ +  +WVM CAYAPSG  +ACGGLDN CS+Y L     E     
Sbjct: 128  KVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAK 187

Query: 607  SRELPGHTGYLSCCRFLD-DNQIITSSGDTTCTLWDIETGQQTVGFAGHSGDVMSLSLAP 783
             + +  HT YLS C F + D QI+T+SGD TC LWD+E+GQ    F GH  DV+ L LAP
Sbjct: 188  KKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAP 247

Query: 784  D--GRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRL 957
               G TFVSG CD    +WD+R   C Q F  HESDIN+V ++P+G AF +GSDDATCRL
Sbjct: 248  SETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDINSVRYYPSGDAFASGSDDATCRL 307

Query: 958  FDLRADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHD 1137
            +DLRAD+E+ +YS ++II G +SV FS SGRLL AGY+D+  N+WD +KG R  +L GH+
Sbjct: 308  YDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHE 367

Query: 1138 NRVSCLGVTDDGMAVATGSWDSFLKIW 1218
            NRVS L V+ DG A  +GSWD  L++W
Sbjct: 368  NRVSTLRVSPDGTAFCSGSWDHTLRVW 394


>ref|NP_004688.2| PRP4 pre-mRNA processing factor 4 homolog [Homo sapiens]
          Length = 522

 Score =  119 bits (299), Expect = 6e-27
 Identities = 81/291 (27%), Positives = 132/291 (45%), Gaps = 13/291 (4%)
 Frame = +1

Query: 385  HWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG---------NFV 537
            H+  +S++L +A   G   +W     N +H +   ++ V    + P           N  
Sbjct: 238  HFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDPKDVNLA 297

Query: 538  ACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQII-TSSGDTTCTLWDI 714
            +C   D    ++SL + E       ++ GHT  ++   +    + + T+  D +  LWD+
Sbjct: 298  SCAA-DGSVKLWSLDSDEPVA----DIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDL 352

Query: 715  ETGQQTVGFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINA 894
            E  ++ +   GHS  V  ++   DG    +G  DA  ++WD+R   C     GH  +I  
Sbjct: 353  EAQEEILHQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYG 412

Query: 895  VAFFPNGYAFTTGSDDATCRLFDLRADQELLMY---SHDNIICGITSVAFSRSGRLLLAG 1065
            + F PNGY   TGS D TC+++DLR  Q   +Y   +H N++ G+        G  LL G
Sbjct: 413  INFSPNGYHIATGSGDNTCKVWDLR--QRRCVYTIPAHQNLVTGVKFEPI--HGNFLLTG 468

Query: 1066 YDDFNCNIWDAMKGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 1218
              D    IW          LAGH+ +V  L ++ DG  +AT S+D   K+W
Sbjct: 469  AYDNTAKIWTHPGWSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLW 519



 Score = 78.6 bits (192), Expect = 1e-14
 Identities = 56/208 (26%), Positives = 92/208 (44%), Gaps = 9/208 (4%)
 Frame = +1

Query: 637  LSCCRFLDDNQII-TSSGDTTCTLWDIETGQQTVGFAGHSGDV--------MSLSLAPDG 789
            +S C F  +++++ T+     C LW +          GH+ +V         ++SL P  
Sbjct: 234  ISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDPKD 293

Query: 790  RTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLR 969
                S A D S+KLW +          GH   +  V + P+G    T   D + RL+DL 
Sbjct: 294  VNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLE 353

Query: 970  ADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVS 1149
            A +E+L     ++  G+  +AF + G L   G  D    +WD   G     L GH   + 
Sbjct: 354  AQEEILHQEGHSM--GVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIY 411

Query: 1150 CLGVTDDGMAVATGSWDSFLKIWN*QPR 1233
             +  + +G  +ATGS D+  K+W+ + R
Sbjct: 412  GINFSPNGYHIATGSGDNTCKVWDLRQR 439



 Score = 70.1 bits (170), Expect = 5e-12
 Identities = 51/205 (24%), Positives = 80/205 (39%), Gaps = 2/205 (0%)
 Frame = +1

Query: 352 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 531
           + GH  ++  + W    R L +   D    +WD     ++      S  V   A+   G+
Sbjct: 319 IEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQEGHSMGVYDIAFHQDGS 378

Query: 532 FVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIITSSGDTTCTLW 708
               GGLD    ++ L+T     R    L GH   +    F  +   I T SGD TC +W
Sbjct: 379 LAGTGGLDAFGRVWDLRTG----RCIMFLEGHLKEIYGINFSPNGYHIATGSGDNTCKVW 434

Query: 709 DIETGQQTVGFAGHSGDVMSLSLAP-DGRTFVSGACDASIKLWDVRDSMCRQTFIGHESD 885
           D+   +       H   V  +   P  G   ++GA D + K+W        +T  GHE  
Sbjct: 435 DLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIWTHPGWSPLKTLAGHEGK 494

Query: 886 INAVAFFPNGYAFTTGSDDATCRLF 960
           +  +    +G    T S D T +L+
Sbjct: 495 VMGLDISSDGQLIATCSYDRTFKLW 519


>ref|NP_849143.1| hypothetical protein LOC164781 [Homo sapiens]
          Length = 415

 Score =  119 bits (299), Expect = 6e-27
 Identities = 83/333 (24%), Positives = 140/333 (42%), Gaps = 42/333 (12%)
 Frame = +1

Query: 346  RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA-P 522
            + L+ H+  +  +         ++ S D    +WD+ +  +++ +    + V   A+  P
Sbjct: 86   KVLKAHILPLTNVALNKSGSCFITGSYDRTCKLWDTASGEELNTLEGHRNVVYAIAFNNP 145

Query: 523  SGNFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQII-TSSGDTTC 699
             G+ +A G  D  C ++S++T     +      GHT  + C  F   + ++ T S DTT 
Sbjct: 146  YGDKIATGSFDKTCKLWSVETG----KCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTA 201

Query: 700  TLWDIETGQQTVGFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHE 879
             LWDI+ G++     GHS +++SLS    G   ++G+ D ++ +WD          IGH 
Sbjct: 202  KLWDIQNGEEVYTLRGHSAEIISLSFNTSGDRIITGSFDHTVVVWDADTGRKVNILIGHC 261

Query: 880  SDINAVAFFPNGYAFTTGSDDATCRLFD-------------------------------L 966
            ++I++ +F  +     TGS D TC+L+D                                
Sbjct: 262  AEISSASFNWDCSLILTGSMDKTCKLWDATNGKCVATLTGHDDEILDSCFDYTGKLIATA 321

Query: 967  RADQELLMYSHDNIIC---------GITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAG 1119
             AD    ++S     C          I+ ++F+  G  LL G  D    IWDA  G    
Sbjct: 322  SADGTARIFSAATRKCIAKLEGHEGEISKISFNPQGNHLLTGSSDKTARIWDAQTGQCLQ 381

Query: 1120 VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 1218
            VL GH + +        G  V TGS D+  +IW
Sbjct: 382  VLEGHTDEIFSCAFNYKGNIVITGSKDNTCRIW 414


>ref|NP_008882.2| TBP-associated factor 5 [Homo sapiens]
          Length = 800

 Score =  112 bits (280), Expect = 9e-25
 Identities = 71/204 (34%), Positives = 100/204 (49%), Gaps = 2/204 (0%)
 Frame = +1

Query: 616  LPGHTGYLSCCRFLDD-NQIITSSGDTTCTLWDIETGQQTVGFAGHSGDVMSLSLAPDGR 792
            L GH+G +    F  D N +++SS D T  LW ++T    VG+ GH+  V     +P G 
Sbjct: 539  LYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGY 598

Query: 793  TFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFD-LR 969
             FVSG  D   +LW        + F GH +D+N   F PN     TGS D T RL+D L 
Sbjct: 599  YFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLN 658

Query: 970  ADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVS 1149
             +   +   H      I S+ FS +GR L  G  D    +WD   G   G L GH + V 
Sbjct: 659  GNCVRIFTGHKG---PIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVC 715

Query: 1150 CLGVTDDGMAVATGSWDSFLKIWN 1221
             L  + DG  +A+GS D+ +++W+
Sbjct: 716  SLRFSRDGEILASGSMDNTVRLWD 739



 Score =  103 bits (257), Expect = 4e-22
 Identities = 61/215 (28%), Positives = 103/215 (47%), Gaps = 2/215 (0%)
 Frame = +1

Query: 346  RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 525
            + L GH   +Y   +  D   L+S+S+DG + +W   T   +      +  V    ++P 
Sbjct: 537  KILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPY 596

Query: 526  GNFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRF-LDDNQIITSSGDTTCT 702
            G +   GG D +  +++      + +  R   GH   ++C RF  + N + T S D T  
Sbjct: 597  GYYFVSGGHDRVARLWA----TDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVR 652

Query: 703  LWDIETGQQTVGFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHES 882
            LWD+  G     F GH G + SL+ +P+GR   +GA D  + LWD+   +      GH  
Sbjct: 653  LWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTD 712

Query: 883  DINAVAFFPNGYAFTTGSDDATCRLFD-LRADQEL 984
             + ++ F  +G    +GS D T RL+D ++A ++L
Sbjct: 713  TVCSLRFSRDGEILASGSMDNTVRLWDAIKAFEDL 747



 Score = 93.6 bits (231), Expect = 4e-19
 Identities = 67/247 (27%), Positives = 111/247 (44%), Gaps = 2/247 (0%)
 Frame = +1

Query: 370  KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGG 549
            K+ ++   +D  L+   S D    I D  T +++  +   S  V   +++P  N++    
Sbjct: 503  KLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGASFSPDRNYLLSSS 562

Query: 550  LDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIITSSG-DTTCTLWDIETGQ 726
             D    ++SL+T    V       GH   +   +F        S G D    LW  +  Q
Sbjct: 563  EDGTVRLWSLQTFTCLVGYK----GHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQ 618

Query: 727  QTVGFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFF 906
                FAGH  DV      P+     +G+ D +++LWDV +  C + F GH+  I+++ F 
Sbjct: 619  PLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFS 678

Query: 907  PNGYAFTTGSDDATCRLFDLRADQEL-LMYSHDNIICGITSVAFSRSGRLLLAGYDDFNC 1083
            PNG    TG+ D    L+D+     +  +  H + +C   S+ FSR G +L +G  D   
Sbjct: 679  PNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVC---SLRFSRDGEILASGSMDNTV 735

Query: 1084 NIWDAMK 1104
             +WDA+K
Sbjct: 736  RLWDAIK 742



 Score = 80.9 bits (198), Expect = 3e-15
 Identities = 47/188 (25%), Positives = 82/188 (43%)
 Frame = +1

Query: 658  DDNQIITSSGDTTCTLWDIETGQQTVGFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWD 837
            D + I   S D    + D +T  +     GHSG V   S +PD    +S + D +++LW 
Sbjct: 512  DLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWS 571

Query: 838  VRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRADQELLMYSHDNIICG 1017
            ++   C   + GH   +    F P GY F +G  D   RL+     Q L +++    +  
Sbjct: 572  LQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFA--GHLAD 629

Query: 1018 ITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSCLGVTDDGMAVATGSW 1197
            +    F  +   +  G  D    +WD + G+   +  GH   +  L  + +G  +ATG+ 
Sbjct: 630  VNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGAT 689

Query: 1198 DSFLKIWN 1221
            D  + +W+
Sbjct: 690  DGRVLLWD 697



 Score = 57.4 bits (137), Expect = 3e-08
 Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 5/143 (3%)
 Frame = +1

Query: 298  ITAGLDPVGRI----QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN 465
            ++ G D V R+      +  R   GHLA +    +  +S  + + S D  + +WD    N
Sbjct: 601  VSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGN 660

Query: 466  KVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSC 645
             V         + +  ++P+G F+A G  D    ++ +    G+  +  EL GHT  +  
Sbjct: 661  CVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDI----GHGLMVGELKGHTDTVCS 716

Query: 646  CRFLDDNQIITS-SGDTTCTLWD 711
             RF  D +I+ S S D T  LWD
Sbjct: 717  LRFSRDGEILASGSMDNTVRLWD 739


>ref|NP_438172.1| WD repeat domain 5 [Homo sapiens]
          Length = 334

 Score =  111 bits (278), Expect = 2e-24
 Identities = 69/250 (27%), Positives = 116/250 (46%), Gaps = 5/250 (2%)
 Frame = +1

Query: 499  VMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSRELPGHT-GYLSCCRFLDDNQII 675
            V +  ++P+G ++A    D +  I+       + +  + + GH  G        D N ++
Sbjct: 48   VSSVKFSPNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGISDVAWSSDSNLLV 103

Query: 676  TSSGDTTCTLWDIETGQQTVGFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMC 855
            ++S D T  +WD+ +G+      GHS  V   +  P     VSG+ D S+++WDV+   C
Sbjct: 104  SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 163

Query: 856  RQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRADQEL-LMYSHDNIICGITSVA 1032
             +T   H   ++AV F  +G    + S D  CR++D  + Q L  +   DN    ++ V 
Sbjct: 164  LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN--PPVSFVK 221

Query: 1033 FSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSCLGV---TDDGMAVATGSWDS 1203
            FS +G+ +LA   D    +WD  KG       GH N   C+        G  + +GS D+
Sbjct: 222  FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 281

Query: 1204 FLKIWN*QPR 1233
             + IWN Q +
Sbjct: 282  LVYIWNLQTK 291



 Score =  101 bits (251), Expect = 2e-21
 Identities = 63/224 (28%), Positives = 107/224 (47%), Gaps = 5/224 (2%)
 Frame = +1

Query: 322 GRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWV 501
           G    +  +T+ GH   I  + W +DS LLVSAS D  L IWD  +   +  +   S++V
Sbjct: 73  GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 132

Query: 502 MTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRF-LDDNQIIT 678
             C + P  N +  G  D    I+ +KT     +  + LP H+  +S   F  D + I++
Sbjct: 133 FCCNFNPQSNLIVSGSFDESVRIWDVKTG----KCLKTLPAHSDPVSAVHFNRDGSLIVS 188

Query: 679 SSGDTTCTLWDIETGQQTVGFAGHSGDVMS-LSLAPDGRTFVSGACDASIKLWDVRDSMC 855
           SS D  C +WD  +GQ            +S +  +P+G+  ++   D ++KLWD     C
Sbjct: 189 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 248

Query: 856 RQTFIGHESD---INAVAFFPNGYAFTTGSDDATCRLFDLRADQ 978
            +T+ GH+++   I A      G    +GS+D    +++L+  +
Sbjct: 249 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 292



 Score =  100 bits (249), Expect = 4e-21
 Identities = 73/295 (24%), Positives = 129/295 (43%), Gaps = 5/295 (1%)
 Frame = +1

Query: 349  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 528
            TL GH   + ++ +  +   L S+S D  + IW +Y       I      +   A++   
Sbjct: 40   TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99

Query: 529  NFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRF-LDDNQIITSSGDTTCTL 705
            N +     D    I+ + +     +  + L GH+ Y+ CC F    N I++ S D +  +
Sbjct: 100  NLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 155

Query: 706  WDIETGQQTVGFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHES- 882
            WD++TG+       HS  V ++    DG   VS + D   ++WD     C +T I  ++ 
Sbjct: 156  WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 215

Query: 883  DINAVAFFPNGYAFTTGSDDATCRLFDLRADQELLMYS-HDNIICGITSVAFSRSGRLLL 1059
             ++ V F PNG      + D T +L+D    + L  Y+ H N    I +      G+ ++
Sbjct: 216  PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 275

Query: 1060 AGYDDFNCNIWDAMKGDRAGVLAGHDNRV--SCLGVTDDGMAVATGSWDSFLKIW 1218
            +G +D    IW+    +    L GH + V  +    T++ +A A    D  +K+W
Sbjct: 276  SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330



 Score = 80.1 bits (196), Expect = 5e-15
 Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 1/161 (0%)
 Frame = +1

Query: 742  AGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYA 921
            AGH+  V S+  +P+G    S + D  IK+W   D    +T  GH+  I+ VA+  +   
Sbjct: 42   AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL 101

Query: 922  FTTGSDDATCRLFDLRADQEL-LMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDA 1098
              + SDD T +++D+ + + L  +  H N    +    F+    L+++G  D +  IWD 
Sbjct: 102  LVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFNPQSNLIVSGSFDESVRIWDV 158

Query: 1099 MKGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 1221
              G     L  H + VS +    DG  + + S+D   +IW+
Sbjct: 159  KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 199


  Database: RefSeqHP
    Posted date:  Aug 2, 2006 12:57 AM
  Number of letters in database: 17,774,539
  Number of sequences in database:  39,411
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,212,829
Number of Sequences: 39411
Number of extensions: 2060036
Number of successful extensions: 13243
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 7110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11922
length of database: 17,774,539
effective HSP length: 107
effective length of database: 13,557,562
effective search space used: 5802636536
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= OVRM1_0083_B05
         (1608 letters)

Database: RefSeqSP 
           1040 sequences; 434,620 total letters

Searching...done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_999497.1| G-beta like protein [Sus scrofa]                      93   2e-20
Alignment   gi|NP_999415.1| platelet-activating factor acetylhydrolase Ib-a...    92   3e-20
Alignment   gi|NP_001012296.1| fizzy/cell division cycle 20 related 1 [Sus ...    68   5e-13

>ref|NP_999497.1| G-beta like protein [Sus scrofa]
          Length = 317

 Score = 93.2 bits (230), Expect = 2e-20
 Identities = 70/267 (26%), Positives = 119/267 (44%), Gaps = 10/267 (3%)
 Frame = +1

Query: 343  RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 522
            +R LRGH   +  +   +D +  +S S DG L +WD  T          +  V++ A++ 
Sbjct: 56   QRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS 115

Query: 523  SGNFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFL--DDNQIITSSG-DT 693
                +  G  D    +++     G  + + +   H+ ++SC RF     N II S G D 
Sbjct: 116  DNRQIVSGSRDKTIKLWNTL---GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDK 172

Query: 694  TCTLWDIETGQQTVGFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIG 873
               +W++   +      GH+G + +++++PDG    SG  D    LWD+ +     T  G
Sbjct: 173  LVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 232

Query: 874  HESDINAVAFFPNGYAFTTGSDDATCRLFDLRA-------DQELLMYSHDNIICGITSVA 1032
             +  INA+ F PN Y +   +   + +++DL          QE++  S        TS+A
Sbjct: 233  GDI-INALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLA 290

Query: 1033 FSRSGRLLLAGYDDFNCNIWDAMKGDR 1113
            +S  G+ L AGY D    +W    G R
Sbjct: 291  WSADGQTLFAGYTDNLVRVWQVTIGTR 317



 Score = 80.9 bits (198), Expect = 8e-17
 Identities = 80/318 (25%), Positives = 134/318 (42%), Gaps = 22/318 (6%)
 Frame = +1

Query: 331  QMRTRRTLRGH---LAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLR---- 489
            QM  R TL+GH   + +I       D  +++SAS+D  +I+W        + IP R    
Sbjct: 4    QMTLRGTLKGHNGWVTQIATTPQFPD--MILSASRDKTIIMWKLTRDETNYGIPQRALRG 61

Query: 490  -SSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN 666
             S +V     +  G F   G  D    ++ L T       +R   GHT  +    F  DN
Sbjct: 62   HSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTG----TTTRRFVGHTKDVLSVAFSSDN 117

Query: 667  -QIITSSGDTTCTLWD-IETGQQTVGFAGHSGDVMSLSLAPDGRTFVSGAC--DASIKLW 834
             QI++ S D T  LW+ +   + TV    HS  V  +  +P+    +  +C  D  +K+W
Sbjct: 118  RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVW 177

Query: 835  DVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRADQELLMYSHDNIIC 1014
            ++ +   +   IGH   +N V   P+G    +G  D    L+DL   + L      +I  
Sbjct: 178  NLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI-- 235

Query: 1015 GITSVAFSRSGRLLLAGYDDFNCNIWDAMKGD------RAGVLA----GHDNRVSCLGVT 1164
             I ++ FS   R  L      +  IWD ++G       +  V++        + + L  +
Sbjct: 236  -INALCFS-PNRYWLCAATGPSIKIWD-LEGKIIVDELKQEVISTSSKAEPPQCTSLAWS 292

Query: 1165 DDGMAVATGSWDSFLKIW 1218
             DG  +  G  D+ +++W
Sbjct: 293  ADGQTLFAGYTDNLVRVW 310



 Score = 80.5 bits (197), Expect = 1e-16
 Identities = 70/252 (27%), Positives = 109/252 (43%), Gaps = 8/252 (3%)
 Frame = +1

Query: 490  SSWVMTCAYAPS-GNFVACGGLDNICSIYSLKTREGNVRV-SRELPGHTGYLSCCRFLDD 663
            + WV   A  P   + +     D    ++ L   E N  +  R L GH+ ++S      D
Sbjct: 15   NGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSD 74

Query: 664  NQI-ITSSGDTTCTLWDIETGQQTVGFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWDV 840
             Q  ++ S D T  LWD+ TG  T  F GH+ DV+S++ + D R  VSG+ D +IKLW+ 
Sbjct: 75   GQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT 134

Query: 841  RDSMCRQTF--IGHESDINAVAFFPNGY--AFTTGSDDATCRLFDLRADQELLMYSHDNI 1008
               +C+ T     H   ++ V F PN       +   D   ++++L   +  L  +H   
Sbjct: 135  L-GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK--LKTNHIGH 191

Query: 1009 ICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHD-NRVSCLGVTDDGMAVA 1185
               + +V  S  G L  +G  D    +WD  +G     L G D     C       +  A
Sbjct: 192  TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAA 251

Query: 1186 TGSWDSFLKIWN 1221
            TG     +KIW+
Sbjct: 252  TG---PSIKIWD 260


>ref|NP_999415.1| platelet-activating factor acetylhydrolase Ib-alpha subunit [Sus
            scrofa]
          Length = 410

 Score = 92.0 bits (227), Expect = 3e-20
 Identities = 71/311 (22%), Positives = 130/311 (41%), Gaps = 22/311 (7%)
 Frame = +1

Query: 352  LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 531
            L GH + +  + +     ++VSAS+D  + +WD  T +    +   +  V   ++  SG 
Sbjct: 104  LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 163

Query: 532  FVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD-NQIITSSGDTTCTLW 708
             +A    D    ++  +  E      R + GH   +S    + + + I++++ D T  +W
Sbjct: 164  LLASCSADMTIKLWDFQGFE----CIRTMHGHDHNVSSVAIMPNGDHIVSAARDKTIKMW 219

Query: 709  DIETGQQTVGFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDI 888
            +++TG     F GH   V  +    DG    S + D ++++W V    C+     HE  +
Sbjct: 220  EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVV 279

Query: 889  NAVAFFPN--------------------GYAFTTGSDDATCRLFDLRADQELL-MYSHDN 1005
              +++ P                     G    +GS D T +++D+     L+ +  HDN
Sbjct: 280  ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN 339

Query: 1006 IICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSCLGVTDDGMAVA 1185
             + G   V F   G+ +L+  DD    +WD         L  H++ V+ L        V 
Sbjct: 340  WVRG---VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVV 396

Query: 1186 TGSWDSFLKIW 1218
            TGS D  +K+W
Sbjct: 397  TGSVDQTVKVW 407



 Score = 87.0 bits (214), Expect = 1e-18
 Identities = 63/272 (23%), Positives = 116/272 (42%), Gaps = 22/272 (8%)
 Frame = +1

Query: 346  RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 525
            RTL+GH   +  + +    +LL S S D  + +WD      +  +      V + A  P+
Sbjct: 144  RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPN 203

Query: 526  GNFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIITS-SGDTTCT 702
            G+ +     D    ++ ++T        +   GH  ++   R   D  +I S S D T  
Sbjct: 204  GDHIVSAARDKTIKMWEVQTG----YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR 259

Query: 703  LWDIETGQQTVGFAGHSGDVMSLSLAPD--------------------GRTFVSGACDAS 822
            +W + T +       H   V  +S AP+                    G   +SG+ D +
Sbjct: 260  VWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT 319

Query: 823  IKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRADQEL-LMYSH 999
            IK+WDV   MC  T +GH++ +  V F   G    + +DD T R++D +  + +  + +H
Sbjct: 320  IKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH 379

Query: 1000 DNIICGITSVAFSRSGRLLLAGYDDFNCNIWD 1095
            ++    +TS+ F ++   ++ G  D    +W+
Sbjct: 380  EHF---VTSLDFHKTAPYVVTGSVDQTVKVWE 408



 Score = 85.1 bits (209), Expect = 4e-18
 Identities = 61/223 (27%), Positives = 99/223 (44%), Gaps = 19/223 (8%)
 Frame = +1

Query: 610  RELPGHTGYLSCCRFLDDNQIITS-SGDTTCTLWDIETGQQTVGFAGHSGDVMSLSLAPD 786
            R L GHT  +    F    +++ S S D T  LWD +  +      GH  +V S+++ P+
Sbjct: 144  RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPN 203

Query: 787  GRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLF-- 960
            G   VS A D +IK+W+V+   C +TF GH   +  V    +G    + S+D T R++  
Sbjct: 204  GDHIVSAARDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 263

Query: 961  -------DLRADQELL---------MYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIW 1092
                   +LR  + ++          YS  +   G  +    + G  LL+G  D    +W
Sbjct: 264  ATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW 323

Query: 1093 DAMKGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 1221
            D   G     L GHDN V  +     G  + + + D  L++W+
Sbjct: 324  DVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD 366



 Score = 71.6 bits (174), Expect = 5e-14
 Identities = 49/229 (21%), Positives = 92/229 (40%), Gaps = 21/229 (9%)
 Frame = +1

Query: 346 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 525
           RT+ GH   + ++    +   +VSA++D  + +W+  T   V        WV        
Sbjct: 186 RTMHGHDHNVSSVAIMPNGDHIVSAARDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD 245

Query: 526 GNFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQ------------ 669
           G  +A    D    ++ + T+E       EL  H   + C  +  ++             
Sbjct: 246 GTLIASCSNDQTVRVWVVATKE----CKAELREHEHVVECISWAPESSYSSISEATGSET 301

Query: 670 ---------IITSSGDTTCTLWDIETGQQTVGFAGHSGDVMSLSLAPDGRTFVSGACDAS 822
                    +++ S D T  +WD+ TG   +   GH   V  +     G+  +S A D +
Sbjct: 302 KKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT 361

Query: 823 IKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLR 969
           +++WD ++  C +T   HE  + ++ F        TGS D T ++++ R
Sbjct: 362 LRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410



 Score = 58.2 bits (139), Expect = 6e-10
 Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
 Frame = +1

Query: 871  GHESDINAVAFFPNGYAFTTGSDDATCRLFDLRA-DQELLMYSHDNIICGITSVAFSRSG 1047
            GH S +  V F P      + S+DAT +++D    D E  +  H +    +  ++F  SG
Sbjct: 106  GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTD---SVQDISFDHSG 162

Query: 1048 RLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN*Q 1227
            +LL +   D    +WD    +    + GHD+ VS + +  +G  + + + D  +K+W  Q
Sbjct: 163  KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSAARDKTIKMWEVQ 222


>ref|NP_001012296.1| fizzy/cell division cycle 20 related 1 [Sus scrofa]
          Length = 493

 Score = 68.2 bits (165), Expect = 5e-13
 Identities = 63/269 (23%), Positives = 111/269 (41%), Gaps = 9/269 (3%)
 Frame = +1

Query: 442  IWDSYTTN--KVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSRE 615
            +W + T+   ++  + +    V +  ++  GN VA G       I+     +   ++S  
Sbjct: 211  LWSACTSQVTRLCDLSVEGDSVTSVGWSERGNLVAVGTHKGFVQIWDAAAGK---KLSM- 266

Query: 616  LPGHTGYLSCCRFLDDNQIITSSGDTTCTLWDIETG--QQTVGFAGHSGDVMSLSLAPDG 789
            L GHT  +    +  D Q+ + S D      DI T   Q      GH  +V  L  + D 
Sbjct: 267  LEGHTARVGALAWNAD-QLSSGSRDRMILQRDIRTPPLQSERRLQGHRQEVCGLKWSTDH 325

Query: 790  RTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTT---GSDDATCRLF 960
            +   SG  D  + +W+       Q +  H + + A+A+ P+ +       G+ D   R +
Sbjct: 326  QLLASGGNDNKLLVWNHSSLSPVQQYTEHLAAVKAIAWSPHQHGLLASGGGTADRCIRFW 385

Query: 961  DLRADQELLMYSHDNIICGITSVAFSRSGRLLLA--GYDDFNCNIWDAMKGDRAGVLAGH 1134
            +    Q L      + +C +   A+S+    L++  GY      +W      +   L GH
Sbjct: 386  NTLTGQPLQCIDTGSQVCNL---AWSKHANELVSTHGYSQNQILVWKYPSLTQVAKLTGH 442

Query: 1135 DNRVSCLGVTDDGMAVATGSWDSFLKIWN 1221
              RV  L ++ DG A+ TG+ D  L+ WN
Sbjct: 443  SYRVLYLAMSPDGEAIVTGAGDETLRFWN 471



 Score = 67.8 bits (164), Expect = 7e-13
 Identities = 44/173 (25%), Positives = 81/173 (46%), Gaps = 4/173 (2%)
 Frame = +1

Query: 334 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 513
           +++ R L+GH  ++  + W TD +LL S   D KL++W+  + + V       + V   A
Sbjct: 303 LQSERRLQGHRQEVCGLKWSTDHQLLASGGNDNKLLVWNHSSLSPVQQYTEHLAAVKAIA 362

Query: 514 YAP--SGNFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIITSSG 687
           ++P   G   + GG  + C I    T  G      +       L+  +    N+++++ G
Sbjct: 363 WSPHQHGLLASGGGTADRC-IRFWNTLTGQPLQCIDTGSQVCNLAWSKHA--NELVSTHG 419

Query: 688 --DTTCTLWDIETGQQTVGFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWDV 840
                  +W   +  Q     GHS  V+ L+++PDG   V+GA D +++ W+V
Sbjct: 420 YSQNQILVWKYPSLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNV 472


  Database: RefSeqSP
    Posted date:  Aug 1, 2006  7:14 PM
  Number of letters in database: 434,620
  Number of sequences in database:  1040
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,518,447
Number of Sequences: 1040
Number of extensions: 42654
Number of successful extensions: 227
Number of sequences better than 1.0e-05: 3
Number of HSP's better than  0.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 434,620
effective HSP length: 81
effective length of database: 350,380
effective search space used: 159072520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= OVRM1_0083_B05
         (1608 letters)

Database: RefSeqMP 
           45,328 sequences; 21,768,885 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_034442.1| guanine nucleotide-binding protein, beta-2 subu...   670   0.0  
Alignment   gi|NP_032168.1| guanine nucleotide-binding protein, beta-1 subu...   617   e-177
Alignment   gi|NP_038559.2| guanine nucleotide-binding protein, beta-4 subu...   608   e-174
Alignment   gi|NP_038558.1| guanine nucleotide-binding protein, beta-3 subu...   560   e-159
Alignment   gi|NP_034443.1| guanine nucleotide-binding protein, beta-5 subu...   355   8e-98
Alignment   gi|NP_619733.1| guanine nucleotide-binding protein, beta-5 subu...   355   8e-98
Alignment   gi|NP_081573.1| PRP4 pre-mRNA processing factor 4 homolog [Mus ...   117   5e-26
Alignment   gi|NP_796316.1| TAF5 RNA polymerase II, TATA box binding protei...   112   1e-24
Alignment   gi|NP_543124.1| WD repeat domain 5 [Mus musculus]                    111   2e-24
Alignment   gi|NP_081630.1| WD repeat domain 51A [Mus musculus]                  110   4e-24

>ref|NP_034442.1| guanine nucleotide-binding protein, beta-2 subunit [Mus musculus]
          Length = 340

 Score =  670 bits (1728), Expect = 0.0
 Identities = 322/323 (99%), Positives = 322/323 (99%)
 Frame = +1

Query: 253  IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG 432
            IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG
Sbjct: 18   IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG 77

Query: 433  KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSR 612
            KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSR
Sbjct: 78   KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSR 137

Query: 613  ELPGHTGYLSCCRFLDDNQIITSSGDTTCTLWDIETGQQTVGFAGHSGDVMSLSLAPDGR 792
            ELPGHTGYLSCCRFLDDNQIITSSGDTTC LWDIETGQQTVGFAGHSGDVMSLSLAPDGR
Sbjct: 138  ELPGHTGYLSCCRFLDDNQIITSSGDTTCALWDIETGQQTVGFAGHSGDVMSLSLAPDGR 197

Query: 793  TFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRA 972
            TFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRA
Sbjct: 198  TFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRA 257

Query: 973  DQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSC 1152
            DQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSC
Sbjct: 258  DQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSC 317

Query: 1153 LGVTDDGMAVATGSWDSFLKIWN 1221
            LGVTDDGMAVATGSWDSFLKIWN
Sbjct: 318  LGVTDDGMAVATGSWDSFLKIWN 340


>ref|NP_032168.1| guanine nucleotide-binding protein, beta-1 subunit [Mus musculus]
          Length = 340

 Score =  617 bits (1592), Expect = e-177
 Identities = 291/323 (90%), Positives = 305/323 (94%)
 Frame = +1

Query: 253  IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG 432
            IRDARKAC D+TL+QIT  +DPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG
Sbjct: 18   IRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG 77

Query: 433  KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSR 612
            KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN+VACGGLDNICSIY+LKTREGNVRVSR
Sbjct: 78   KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSR 137

Query: 613  ELPGHTGYLSCCRFLDDNQIITSSGDTTCTLWDIETGQQTVGFAGHSGDVMSLSLAPDGR 792
            EL GHTGYLSCCRFLDDNQI+TSSGDTTC LWDIETGQQT  F GH+GDVMSLSLAPD R
Sbjct: 138  ELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR 197

Query: 793  TFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRA 972
             FVSGACDAS KLWDVR+ MCRQTF GHESDINA+ FFPNG AF TGSDDATCRLFDLRA
Sbjct: 198  LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257

Query: 973  DQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSC 1152
            DQEL+ YSHDNIICGITSV+FS+SGRLLLAGYDDFNCN+WDA+K DRAGVLAGHDNRVSC
Sbjct: 258  DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSC 317

Query: 1153 LGVTDDGMAVATGSWDSFLKIWN 1221
            LGVTDDGMAVATGSWDSFLKIWN
Sbjct: 318  LGVTDDGMAVATGSWDSFLKIWN 340


>ref|NP_038559.2| guanine nucleotide-binding protein, beta-4 subunit [Mus musculus]
          Length = 340

 Score =  608 bits (1568), Expect = e-174
 Identities = 286/323 (88%), Positives = 306/323 (94%)
 Frame = +1

Query: 253  IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG 432
            I+DARKAC D+TL QIT+ +D VGRIQMRTRRTLRGHLAKIYAMHWG DSRLLVSASQDG
Sbjct: 18   IQDARKACNDATLVQITSNMDSVGRIQMRTRRTLRGHLAKIYAMHWGYDSRLLVSASQDG 77

Query: 433  KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSR 612
            KLIIWDSYTTNK+HAIPLRSSWVMTCAYAPSGN+VACGGLDNICSIY+LKTREGNVRVSR
Sbjct: 78   KLIIWDSYTTNKMHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSR 137

Query: 613  ELPGHTGYLSCCRFLDDNQIITSSGDTTCTLWDIETGQQTVGFAGHSGDVMSLSLAPDGR 792
            ELPGHTGYLSCCRFLDD QIITSSGDTTC LWDIETGQQT  F GHSGDVMSLSL+PD +
Sbjct: 138  ELPGHTGYLSCCRFLDDGQIITSSGDTTCALWDIETGQQTTTFTGHSGDVMSLSLSPDLK 197

Query: 793  TFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRA 972
            TFVSGACDAS KLWD+RD MCRQ+F GH SDINAV+FFP+GYAF TGSDDATCRLFDLRA
Sbjct: 198  TFVSGACDASSKLWDIRDGMCRQSFTGHISDINAVSFFPSGYAFATGSDDATCRLFDLRA 257

Query: 973  DQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSC 1152
            DQELL+YSHDNIICGITSVAFS+SGRLLLAGYDDFNC++WDA+KG R+GVLAGHDNRVSC
Sbjct: 258  DQELLLYSHDNIICGITSVAFSKSGRLLLAGYDDFNCSVWDALKGGRSGVLAGHDNRVSC 317

Query: 1153 LGVTDDGMAVATGSWDSFLKIWN 1221
            LGVTDDGMAVATGSWDSFL+IWN
Sbjct: 318  LGVTDDGMAVATGSWDSFLRIWN 340


>ref|NP_038558.1| guanine nucleotide-binding protein, beta-3 subunit [Mus musculus]
          Length = 340

 Score =  560 bits (1444), Expect = e-159
 Identities = 259/323 (80%), Positives = 289/323 (89%)
 Frame = +1

Query: 253  IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG 432
            I DARKAC D TL ++ +GL+ VGR+QMRTRRTLRGHLAKIYAMHW TDS+LLVSASQDG
Sbjct: 18   IADARKACADITLAELVSGLEVVGRVQMRTRRTLRGHLAKIYAMHWATDSKLLVSASQDG 77

Query: 433  KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSR 612
            KLI+WD+YTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDN+CSIY+LK+REGNV+VSR
Sbjct: 78   KLIVWDTYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNMCSIYNLKSREGNVKVSR 137

Query: 613  ELPGHTGYLSCCRFLDDNQIITSSGDTTCTLWDIETGQQTVGFAGHSGDVMSLSLAPDGR 792
            EL  HTGYLSCCRFLDDN I+TSSGDTTC LWDIETGQQ   F GH+GD MSL+++PD +
Sbjct: 138  ELSAHTGYLSCCRFLDDNNIVTSSGDTTCALWDIETGQQKTVFVGHTGDCMSLAVSPDYK 197

Query: 793  TFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRA 972
             F+SGACDAS KLWDVR+  CRQTF GHESDINA+ FFPNG A  TGSDDA+CRLFDLRA
Sbjct: 198  LFISGACDASAKLWDVREGTCRQTFTGHESDINAICFFPNGEAICTGSDDASCRLFDLRA 257

Query: 973  DQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSC 1152
            DQEL  YS ++IICGITSVAFS SGRLL AGYDDFNCN+WD++K +R G+L+GHDNRVSC
Sbjct: 258  DQELTAYSQESIICGITSVAFSLSGRLLFAGYDDFNCNVWDSLKCERVGILSGHDNRVSC 317

Query: 1153 LGVTDDGMAVATGSWDSFLKIWN 1221
            LGVT DGMAVATGSWDSFLKIWN
Sbjct: 318  LGVTADGMAVATGSWDSFLKIWN 340


>ref|NP_034443.1| guanine nucleotide-binding protein, beta-5 subunit isoform 1 [Mus
            musculus]
          Length = 395

 Score =  355 bits (911), Expect = 8e-98
 Identities = 169/327 (51%), Positives = 222/327 (67%), Gaps = 5/327 (1%)
 Frame = +1

Query: 253  IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG 432
            + + R    D  L Q+   ++ +G+  M+TRRTL+GH  K+  M W  D R +VS+SQDG
Sbjct: 68   LEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDG 127

Query: 433  KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLK--TREGNVRV 606
            K+I+WDS+TTNK HA+ +  +WVM CAYAPSG  +ACGGLDN CS+Y L     E     
Sbjct: 128  KVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAK 187

Query: 607  SRELPGHTGYLSCCRFLD-DNQIITSSGDTTCTLWDIETGQQTVGFAGHSGDVMSLSLAP 783
             + +  HT YLS C F + D QI+T+SGD TC LWD+E+GQ    F GH  DV+ L LAP
Sbjct: 188  KKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAP 247

Query: 784  D--GRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRL 957
               G TFVSG CD    +WD+R   C Q F  HESD+N+V ++P+G AF +GSDDATCRL
Sbjct: 248  SETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRL 307

Query: 958  FDLRADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHD 1137
            +DLRAD+E+ +YS ++II G +SV FS SGRLL AGY+D+  N+WD +KG R  +L GH+
Sbjct: 308  YDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHE 367

Query: 1138 NRVSCLGVTDDGMAVATGSWDSFLKIW 1218
            NRVS L V+ DG A  +GSWD  L++W
Sbjct: 368  NRVSTLRVSPDGTAFCSGSWDHTLRVW 394


>ref|NP_619733.1| guanine nucleotide-binding protein, beta-5 subunit isoform 2 [Mus
            musculus]
          Length = 353

 Score =  355 bits (911), Expect = 8e-98
 Identities = 169/327 (51%), Positives = 222/327 (67%), Gaps = 5/327 (1%)
 Frame = +1

Query: 253  IRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG 432
            + + R    D  L Q+   ++ +G+  M+TRRTL+GH  K+  M W  D R +VS+SQDG
Sbjct: 26   LEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDG 85

Query: 433  KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLK--TREGNVRV 606
            K+I+WDS+TTNK HA+ +  +WVM CAYAPSG  +ACGGLDN CS+Y L     E     
Sbjct: 86   KVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAK 145

Query: 607  SRELPGHTGYLSCCRFLD-DNQIITSSGDTTCTLWDIETGQQTVGFAGHSGDVMSLSLAP 783
             + +  HT YLS C F + D QI+T+SGD TC LWD+E+GQ    F GH  DV+ L LAP
Sbjct: 146  KKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAP 205

Query: 784  D--GRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRL 957
               G TFVSG CD    +WD+R   C Q F  HESD+N+V ++P+G AF +GSDDATCRL
Sbjct: 206  SETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRL 265

Query: 958  FDLRADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHD 1137
            +DLRAD+E+ +YS ++II G +SV FS SGRLL AGY+D+  N+WD +KG R  +L GH+
Sbjct: 266  YDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHE 325

Query: 1138 NRVSCLGVTDDGMAVATGSWDSFLKIW 1218
            NRVS L V+ DG A  +GSWD  L++W
Sbjct: 326  NRVSTLRVSPDGTAFCSGSWDHTLRVW 352


>ref|NP_081573.1| PRP4 pre-mRNA processing factor 4 homolog [Mus musculus]
          Length = 521

 Score =  117 bits (292), Expect = 5e-26
 Identities = 80/291 (27%), Positives = 132/291 (45%), Gaps = 13/291 (4%)
 Frame = +1

Query: 385  HWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG---------NFV 537
            H+  +S++L +A   G   +W     + +H +   ++ V    + P           N  
Sbjct: 237  HFSPNSKMLATACWSGLCKLWSVPDCSLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLA 296

Query: 538  ACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQII-TSSGDTTCTLWDI 714
            +C   D    ++SL + E       ++ GHT  ++   +    + + T+  D +  LWD+
Sbjct: 297  SCAA-DGSVKLWSLDSDEPVA----DIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDL 351

Query: 715  ETGQQTVGFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINA 894
            E  ++ +   GHS  V  ++   DG    +G  DA  ++WD+R   C     GH  +I  
Sbjct: 352  EAQEEILHQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYG 411

Query: 895  VAFFPNGYAFTTGSDDATCRLFDLRADQELLMY---SHDNIICGITSVAFSRSGRLLLAG 1065
            + F PNGY   TGS D TC+++DLR  Q   +Y   +H N++ G+        G  LL G
Sbjct: 412  INFSPNGYHIATGSGDNTCKVWDLR--QRRCVYTIPAHQNLVTGVKFEPI--HGDFLLTG 467

Query: 1066 YDDFNCNIWDAMKGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 1218
              D    IW          LAGH+ +V  L ++ DG  +AT S+D   K+W
Sbjct: 468  AYDNTAKIWTHPGWSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLW 518



 Score = 75.5 bits (184), Expect = 2e-13
 Identities = 54/208 (25%), Positives = 90/208 (43%), Gaps = 9/208 (4%)
 Frame = +1

Query: 637  LSCCRFLDDNQII-TSSGDTTCTLWDIETGQQTVGFAGHSGDVMSLSLAPDGRT------ 795
            +S C F  +++++ T+     C LW +          GH+ +V ++   P          
Sbjct: 233  ISYCHFSPNSKMLATACWSGLCKLWSVPDCSLLHTLRGHNTNVGAIVFHPKSTVSLDQKD 292

Query: 796  --FVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLR 969
                S A D S+KLW +          GH   +  V + P+G    T   D + RL+DL 
Sbjct: 293  VNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLE 352

Query: 970  ADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVS 1149
            A +E+L     ++  G+  +AF + G L   G  D    +WD   G     L GH   + 
Sbjct: 353  AQEEILHQEGHSM--GVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIY 410

Query: 1150 CLGVTDDGMAVATGSWDSFLKIWN*QPR 1233
             +  + +G  +ATGS D+  K+W+ + R
Sbjct: 411  GINFSPNGYHIATGSGDNTCKVWDLRQR 438



 Score = 69.3 bits (168), Expect = 1e-11
 Identities = 51/205 (24%), Positives = 80/205 (39%), Gaps = 2/205 (0%)
 Frame = +1

Query: 352 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 531
           + GH  ++  + W    R L +   D    +WD     ++      S  V   A+   G+
Sbjct: 318 IEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQEGHSMGVYDIAFHQDGS 377

Query: 532 FVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIITSSGDTTCTLW 708
               GGLD    ++ L+T     R    L GH   +    F  +   I T SGD TC +W
Sbjct: 378 LAGTGGLDAFGRVWDLRTG----RCIMFLEGHLKEIYGINFSPNGYHIATGSGDNTCKVW 433

Query: 709 DIETGQQTVGFAGHSGDVMSLSLAP-DGRTFVSGACDASIKLWDVRDSMCRQTFIGHESD 885
           D+   +       H   V  +   P  G   ++GA D + K+W        +T  GHE  
Sbjct: 434 DLRQRRCVYTIPAHQNLVTGVKFEPIHGDFLLTGAYDNTAKIWTHPGWSPLKTLAGHEGK 493

Query: 886 INAVAFFPNGYAFTTGSDDATCRLF 960
           +  +    +G    T S D T +L+
Sbjct: 494 VMGLDISSDGQLIATCSYDRTFKLW 518


>ref|NP_796316.1| TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated
            factor, 100kDa [Mus musculus]
          Length = 801

 Score =  112 bits (280), Expect = 1e-24
 Identities = 71/204 (34%), Positives = 100/204 (49%), Gaps = 2/204 (0%)
 Frame = +1

Query: 616  LPGHTGYLSCCRFLDD-NQIITSSGDTTCTLWDIETGQQTVGFAGHSGDVMSLSLAPDGR 792
            L GH+G +    F  D N +++SS D T  LW ++T    VG+ GH+  V     +P G 
Sbjct: 540  LYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGY 599

Query: 793  TFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFD-LR 969
             FVSG  D   +LW        + F GH +D+N   F PN     TGS D T RL+D L 
Sbjct: 600  YFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLN 659

Query: 970  ADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVS 1149
             +   +   H      I S+ FS +GR L  G  D    +WD   G   G L GH + V 
Sbjct: 660  GNCVRIFTGHKG---PIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVC 716

Query: 1150 CLGVTDDGMAVATGSWDSFLKIWN 1221
             L  + DG  +A+GS D+ +++W+
Sbjct: 717  SLRFSRDGEILASGSMDNTVRLWD 740



 Score =  103 bits (256), Expect = 7e-22
 Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 1/207 (0%)
 Frame = +1

Query: 346  RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 525
            + L GH   +Y   +  D   L+S+S+DG + +W   T   +      +  V    ++P 
Sbjct: 538  KILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPY 597

Query: 526  GNFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRF-LDDNQIITSSGDTTCT 702
            G +   GG D +  +++      + +  R   GH   ++C RF  + N + T S D T  
Sbjct: 598  GYYFVSGGHDRVARLWA----TDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVR 653

Query: 703  LWDIETGQQTVGFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHES 882
            LWD+  G     F GH G + SL+ +P+GR   +GA D  + LWD+   +      GH  
Sbjct: 654  LWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTD 713

Query: 883  DINAVAFFPNGYAFTTGSDDATCRLFD 963
             + ++ F  +G    +GS D T RL+D
Sbjct: 714  TVCSLRFSRDGEILASGSMDNTVRLWD 740



 Score = 93.6 bits (231), Expect = 5e-19
 Identities = 67/247 (27%), Positives = 111/247 (44%), Gaps = 2/247 (0%)
 Frame = +1

Query: 370  KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGG 549
            K+ ++   +D  L+   S D    I D  T +++  +   S  V   +++P  N++    
Sbjct: 504  KLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGASFSPDRNYLLSSS 563

Query: 550  LDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIITSSG-DTTCTLWDIETGQ 726
             D    ++SL+T    V       GH   +   +F        S G D    LW  +  Q
Sbjct: 564  EDGTVRLWSLQTFTCLVGYK----GHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQ 619

Query: 727  QTVGFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFF 906
                FAGH  DV      P+     +G+ D +++LWDV +  C + F GH+  I+++ F 
Sbjct: 620  PLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFS 679

Query: 907  PNGYAFTTGSDDATCRLFDLRADQEL-LMYSHDNIICGITSVAFSRSGRLLLAGYDDFNC 1083
            PNG    TG+ D    L+D+     +  +  H + +C   S+ FSR G +L +G  D   
Sbjct: 680  PNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVC---SLRFSRDGEILASGSMDNTV 736

Query: 1084 NIWDAMK 1104
             +WDA+K
Sbjct: 737  RLWDAVK 743



 Score = 80.9 bits (198), Expect = 4e-15
 Identities = 47/188 (25%), Positives = 82/188 (43%)
 Frame = +1

Query: 658  DDNQIITSSGDTTCTLWDIETGQQTVGFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWD 837
            D + I   S D    + D +T  +     GHSG V   S +PD    +S + D +++LW 
Sbjct: 513  DLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWS 572

Query: 838  VRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRADQELLMYSHDNIICG 1017
            ++   C   + GH   +    F P GY F +G  D   RL+     Q L +++    +  
Sbjct: 573  LQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFA--GHLAD 630

Query: 1018 ITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSCLGVTDDGMAVATGSW 1197
            +    F  +   +  G  D    +WD + G+   +  GH   +  L  + +G  +ATG+ 
Sbjct: 631  VNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGAT 690

Query: 1198 DSFLKIWN 1221
            D  + +W+
Sbjct: 691  DGRVLLWD 698



 Score = 57.4 bits (137), Expect = 4e-08
 Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 5/143 (3%)
 Frame = +1

Query: 298  ITAGLDPVGRI----QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN 465
            ++ G D V R+      +  R   GHLA +    +  +S  + + S D  + +WD    N
Sbjct: 602  VSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGN 661

Query: 466  KVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSC 645
             V         + +  ++P+G F+A G  D    ++ +    G+  +  EL GHT  +  
Sbjct: 662  CVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDI----GHGLMVGELKGHTDTVCS 717

Query: 646  CRFLDDNQIITS-SGDTTCTLWD 711
             RF  D +I+ S S D T  LWD
Sbjct: 718  LRFSRDGEILASGSMDNTVRLWD 740


>ref|NP_543124.1| WD repeat domain 5 [Mus musculus]
          Length = 334

 Score =  111 bits (278), Expect = 2e-24
 Identities = 69/250 (27%), Positives = 116/250 (46%), Gaps = 5/250 (2%)
 Frame = +1

Query: 499  VMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSRELPGHT-GYLSCCRFLDDNQII 675
            V +  ++P+G ++A    D +  I+       + +  + + GH  G        D N ++
Sbjct: 48   VSSVKFSPNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGISDVAWSSDSNLLV 103

Query: 676  TSSGDTTCTLWDIETGQQTVGFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMC 855
            ++S D T  +WD+ +G+      GHS  V   +  P     VSG+ D S+++WDV+   C
Sbjct: 104  SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 163

Query: 856  RQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRADQEL-LMYSHDNIICGITSVA 1032
             +T   H   ++AV F  +G    + S D  CR++D  + Q L  +   DN    ++ V 
Sbjct: 164  LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN--PPVSFVK 221

Query: 1033 FSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSCLGV---TDDGMAVATGSWDS 1203
            FS +G+ +LA   D    +WD  KG       GH N   C+        G  + +GS D+
Sbjct: 222  FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 281

Query: 1204 FLKIWN*QPR 1233
             + IWN Q +
Sbjct: 282  LVYIWNLQTK 291



 Score =  101 bits (251), Expect = 3e-21
 Identities = 63/224 (28%), Positives = 107/224 (47%), Gaps = 5/224 (2%)
 Frame = +1

Query: 322 GRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWV 501
           G    +  +T+ GH   I  + W +DS LLVSAS D  L IWD  +   +  +   S++V
Sbjct: 73  GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 132

Query: 502 MTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRF-LDDNQIIT 678
             C + P  N +  G  D    I+ +KT     +  + LP H+  +S   F  D + I++
Sbjct: 133 FCCNFNPQSNLIVSGSFDESVRIWDVKTG----KCLKTLPAHSDPVSAVHFNRDGSLIVS 188

Query: 679 SSGDTTCTLWDIETGQQTVGFAGHSGDVMS-LSLAPDGRTFVSGACDASIKLWDVRDSMC 855
           SS D  C +WD  +GQ            +S +  +P+G+  ++   D ++KLWD     C
Sbjct: 189 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 248

Query: 856 RQTFIGHESD---INAVAFFPNGYAFTTGSDDATCRLFDLRADQ 978
            +T+ GH+++   I A      G    +GS+D    +++L+  +
Sbjct: 249 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 292



 Score =  100 bits (249), Expect = 4e-21
 Identities = 73/295 (24%), Positives = 129/295 (43%), Gaps = 5/295 (1%)
 Frame = +1

Query: 349  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 528
            TL GH   + ++ +  +   L S+S D  + IW +Y       I      +   A++   
Sbjct: 40   TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99

Query: 529  NFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRF-LDDNQIITSSGDTTCTL 705
            N +     D    I+ + +     +  + L GH+ Y+ CC F    N I++ S D +  +
Sbjct: 100  NLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 155

Query: 706  WDIETGQQTVGFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHES- 882
            WD++TG+       HS  V ++    DG   VS + D   ++WD     C +T I  ++ 
Sbjct: 156  WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 215

Query: 883  DINAVAFFPNGYAFTTGSDDATCRLFDLRADQELLMYS-HDNIICGITSVAFSRSGRLLL 1059
             ++ V F PNG      + D T +L+D    + L  Y+ H N    I +      G+ ++
Sbjct: 216  PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 275

Query: 1060 AGYDDFNCNIWDAMKGDRAGVLAGHDNRV--SCLGVTDDGMAVATGSWDSFLKIW 1218
            +G +D    IW+    +    L GH + V  +    T++ +A A    D  +K+W
Sbjct: 276  SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330



 Score = 80.1 bits (196), Expect = 6e-15
 Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 1/161 (0%)
 Frame = +1

Query: 742  AGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYA 921
            AGH+  V S+  +P+G    S + D  IK+W   D    +T  GH+  I+ VA+  +   
Sbjct: 42   AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL 101

Query: 922  FTTGSDDATCRLFDLRADQEL-LMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDA 1098
              + SDD T +++D+ + + L  +  H N    +    F+    L+++G  D +  IWD 
Sbjct: 102  LVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFNPQSNLIVSGSFDESVRIWDV 158

Query: 1099 MKGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 1221
              G     L  H + VS +    DG  + + S+D   +IW+
Sbjct: 159  KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 199


>ref|NP_081630.1| WD repeat domain 51A [Mus musculus]
          Length = 405

 Score =  110 bits (275), Expect = 4e-24
 Identities = 73/292 (25%), Positives = 123/292 (42%), Gaps = 1/292 (0%)
 Frame = +1

Query: 346  RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 525
            R  +GH   +  + +  +++ L S S D  L+IW   + ++ +        V    ++PS
Sbjct: 13   RHFKGHRDAVTCVDFSLNTKHLASGSMDSTLMIWHMKSQSRAYRFTGHKDAVTCVNFSPS 72

Query: 526  GNFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQ-IITSSGDTTCT 702
            G+ +A G  D    I+ +   +G   V R    HT  +    F  D Q ++T+S D T  
Sbjct: 73   GHLLASGSRDKTVRIW-VPNVKGESTVFR---AHTATVRSVHFCSDGQSLVTASDDKTVK 128

Query: 703  LWDIETGQQTVGFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHES 882
            +W     +       H   V     +PDGR  VS + D ++KLWD     C  ++  H  
Sbjct: 129  VWSTHRQRFLFSLTQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECIHSYCEHGG 188

Query: 883  DINAVAFFPNGYAFTTGSDDATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLA 1062
             +  V F P+G        D T +++D R  + L  Y   +    + +++F  SG  L+ 
Sbjct: 189  FVTYVDFHPSGTCIAAAGMDNTVKVWDARTHRLLQHYQLHS--AAVNALSFHPSGNYLIT 246

Query: 1063 GYDDFNCNIWDAMKGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 1218
               D    I D M+G     L GH    + +  +  G   A+G  D  + +W
Sbjct: 247  ASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVMVW 298



 Score = 87.4 bits (215), Expect = 4e-17
 Identities = 48/207 (23%), Positives = 93/207 (44%), Gaps = 1/207 (0%)
 Frame = +1

Query: 604  VSRELPGHTGYLSCCRF-LDDNQIITSSGDTTCTLWDIETGQQTVGFAGHSGDVMSLSLA 780
            + R   GH   ++C  F L+   + + S D+T  +W +++  +   F GH   V  ++ +
Sbjct: 11   LERHFKGHRDAVTCVDFSLNTKHLASGSMDSTLMIWHMKSQSRAYRFTGHKDAVTCVNFS 70

Query: 781  PDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLF 960
            P G    SG+ D ++++W          F  H + + +V F  +G +  T SDD T +++
Sbjct: 71   PSGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSLVTASDDKTVKVW 130

Query: 961  DLRADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDN 1140
                 ++  ++S    I  +    FS  GRL+++  DD    +WD    +       H  
Sbjct: 131  S--THRQRFLFSLTQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECIHSYCEHGG 188

Query: 1141 RVSCLGVTDDGMAVATGSWDSFLKIWN 1221
             V+ +     G  +A    D+ +K+W+
Sbjct: 189  FVTYVDFHPSGTCIAAAGMDNTVKVWD 215



 Score = 75.5 bits (184), Expect = 2e-13
 Identities = 48/192 (25%), Positives = 87/192 (45%), Gaps = 5/192 (2%)
 Frame = +1

Query: 274 CGDSTLTQITAGLDPVGRIQMRTRR----TLRGHLAKIYAMHWGTDSRLLVSASQDGKLI 441
           C D   + +TA  D   ++    R+    +L  H+  +    +  D RL+VSAS D  + 
Sbjct: 112 CSDGQ-SLVTASDDKTVKVWSTHRQRFLFSLTQHINWVRCAKFSPDGRLIVSASDDKTVK 170

Query: 442 IWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSRELP 621
           +WD  +   +H+      +V    + PSG  +A  G+DN   ++  +T     R+ +   
Sbjct: 171 LWDKTSRECIHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDARTH----RLLQHYQ 226

Query: 622 GHTGYLSCCRF-LDDNQIITSSGDTTCTLWDIETGQQTVGFAGHSGDVMSLSLAPDGRTF 798
            H+  ++   F    N +IT+S D+T  + D+  G+      GH G   +++ +  G  F
Sbjct: 227 LHSAAVNALSFHPSGNYLITASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYF 286

Query: 799 VSGACDASIKLW 834
            SG  D  + +W
Sbjct: 287 ASGGSDEQVMVW 298



 Score = 52.0 bits (123), Expect = 2e-06
 Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 1/127 (0%)
 Frame = +1

Query: 844  DSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRADQELLMYS-HDNIICGI 1020
            D    + F GH   +  V F  N     +GS D+T  ++ +++      ++ H +    +
Sbjct: 8    DPSLERHFKGHRDAVTCVDFSLNTKHLASGSMDSTLMIWHMKSQSRAYRFTGHKD---AV 64

Query: 1021 TSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWD 1200
            T V FS SG LL +G  D    IW       + V   H   V  +    DG ++ T S D
Sbjct: 65   TCVNFSPSGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSLVTASDD 124

Query: 1201 SFLKIWN 1221
              +K+W+
Sbjct: 125  KTVKVWS 131


  Database: RefSeqMP
    Posted date:  Aug 2, 2006 12:58 AM
  Number of letters in database: 21,768,885
  Number of sequences in database:  45,328
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,854,832
Number of Sequences: 45328
Number of extensions: 2251534
Number of successful extensions: 13069
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 7410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11765
length of database: 21,768,885
effective HSP length: 108
effective length of database: 16,873,461
effective search space used: 7204967847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)