Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0112_F03
(1567 letters)
Database: RefSeqBP
33,508 sequences; 16,112,626 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_614481.2| PREDICTED: similar to WD-repeat protein 57 isof... 644 0.0
Alignment gi|XP_887150.1| PREDICTED: similar to WD-repeat protein 57 isof... 234 1e-61
Alignment gi|XP_608583.2| PREDICTED: similar to CG7568-PA [Bos taurus] 134 2e-31
Alignment gi|NP_001033649.1| WD repeat domain 51A [Bos taurus] 121 2e-27
Alignment gi|XP_869200.1| PREDICTED: similar to Autophagy protein 16-like... 120 3e-27
Alignment gi|XP_877191.1| PREDICTED: similar to Autophagy protein 16-like... 120 3e-27
Alignment gi|XP_877095.1| PREDICTED: similar to Autophagy protein 16-like... 120 3e-27
Alignment gi|XP_603483.2| PREDICTED: similar to WD repeat domain 51B [Bos... 111 2e-24
Alignment gi|XP_588289.2| PREDICTED: similar to APG16L beta isoform [Bos ... 110 3e-24
Alignment gi|NP_777088.1| platelet-activating factor acetylhydrolase, iso... 109 5e-24
>ref|XP_614481.2| PREDICTED: similar to WD-repeat protein 57 isoform 1 [Bos taurus]
Length = 358
Score = 644 bits (1660), Expect = 0.0
Identities = 316/358 (88%), Positives = 316/358 (88%)
Frame = +2
Query: 32 MIEQQKRKGPELPLVPVKRQRHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCSSLQAPI 211
MIEQQKRKGPELPLVPVKRQRHE RCSSLQAPI
Sbjct: 1 MIEQQKRKGPELPLVPVKRQRHELLLGAAGSGPGAGQQQAAPGALLQAGPPRCSSLQAPI 60
Query: 212 MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT 391
MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT
Sbjct: 61 MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT 120
Query: 392 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 571
DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW
Sbjct: 121 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 180
Query: 572 DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 751
DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT
Sbjct: 181 DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 240
Query: 752 XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 931
NAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK
Sbjct: 241 GLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 300
Query: 932 IAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDKRLYTGEIQ 1105
IAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDKRLY GEIQ
Sbjct: 301 IAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDKRLYMGEIQ 358
>ref|XP_887150.1| PREDICTED: similar to WD-repeat protein 57 isoform 2 [Bos taurus]
Length = 127
Score = 234 bits (597), Expect = 1e-61
Identities = 113/127 (88%), Positives = 113/127 (88%)
Frame = +2
Query: 725 MRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLR 904
MRGHADSVT NAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLR
Sbjct: 1 MRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLR 60
Query: 905 CSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDKR 1084
CSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDKR
Sbjct: 61 CSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDKR 120
Query: 1085 LYTGEIQ 1105
LY GEIQ
Sbjct: 121 LYMGEIQ 127
>ref|XP_608583.2| PREDICTED: similar to CG7568-PA [Bos taurus]
Length = 441
Score = 134 bits (338), Expect = 2e-31
Identities = 80/275 (29%), Positives = 135/275 (49%), Gaps = 2/275 (0%)
Frame = +2
Query: 263 NGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTD-GSMLFSASTDKTVAV 439
+GS + +DR LW+ + TL+GH V + +N G + + S DKT +
Sbjct: 129 SGSCFITGSYDRTCKLWDTASG-EELHTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKL 187
Query: 440 WDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTY 616
W ETG+ +GHT+ + C LV TGS D T KLWDI+ + T ++
Sbjct: 188 WSVETGKCYHTFRGHTAEI-VCLSFNPQSTLVATGSMDTTAKLWDIQSGEEVFTLTGHSA 246
Query: 617 QVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNA 796
++++++FN + ++II+G D+ + VW+ + YT+ GH ++ +
Sbjct: 247 EIISLSFNTSGNRIITGSFDHTVTVWEADTGRKVYTLIGHCAEISSAVFNWDCSLILTGS 306
Query: 797 MDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDT 976
MD T ++WD A +CV G+ + +L + G IA SAD ++
Sbjct: 307 MDKTCKLWD----AVNGKCVATLTGH----DDEILDSCFDYTGKLIATASADGTARIFSA 358
Query: 977 TSRRILYKLPGHAGSINEVAFHPDEPIILSASSDK 1081
+R + KL GH G I++++F+P +L+ SSDK
Sbjct: 359 ATRECVTKLEGHEGEISKISFNPQGNRLLTGSSDK 393
Score = 134 bits (337), Expect = 2e-31
Identities = 83/290 (28%), Positives = 139/290 (47%), Gaps = 3/290 (1%)
Frame = +2
Query: 218 LSGHEGEVYCCKFH-PNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYNT 391
L GH VY F+ P G +A+ FD+ LW+V G C Y T +GH+ ++ L +N
Sbjct: 156 LEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKC--YHTFRGHTAEIVCLSFNP 213
Query: 392 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 571
+++ + S D T +WD ++GE V L GH++ + S G +++ TGS D TV +W
Sbjct: 214 QSTLVATGSMDTTAKLWDIQSGEEVFTLTGHSAEIISLSFNTSGNRII-TGSFDHTVTVW 272
Query: 572 DIRKKAAIQTF-QNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSV 748
+ + T + ++ + FN I++G +D K+WD K T+ GH D +
Sbjct: 273 EADTGRKVYTLIGHCAEISSAVFNWDCSLILTGSMDKTCKLWDAVNGKCVATLTGHDDEI 332
Query: 749 TXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGS 928
+ D T R++ A CV +G+ E + + S++P G+
Sbjct: 333 LDSCFDYTGKLIATASADGTARIFS----AATRECVTKLEGH----EGEISKISFNPQGN 384
Query: 929 KIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSD 1078
++ GS+D+ +WD + + L L GH I AF+ II++ S D
Sbjct: 385 RLLTGSSDKTARIWDAQTGQCLQVLEGHTDEIFSCAFNYKGDIIITGSKD 434
Score = 113 bits (283), Expect = 4e-25
Identities = 65/250 (26%), Positives = 113/250 (45%), Gaps = 1/250 (0%)
Frame = +2
Query: 224 GHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSM 403
GH E+ C F+P + +A+ D LW++ + TL GHS ++ L +NT G+
Sbjct: 201 GHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQSG-EEVFTLTGHSAEIISLSFNTSGNR 259
Query: 404 LFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD-IR 580
+ + S D TV VW+++TG +V L GH + ++S L+ TGS D T KLWD +
Sbjct: 260 IITGSFDHTVTVWEADTGRKVYTLIGHCAEISSAV-FNWDCSLILTGSMDKTCKLWDAVN 318
Query: 581 KKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXX 760
K + ++L F+ T I + D +++ + + GH ++
Sbjct: 319 GKCVATLTGHDDEILDSCFDYTGKLIATASADGTARIFSAATRECVTKLEGHEGEISKIS 378
Query: 761 XXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAA 940
+ D T R+WD A +C+++ +G+ + C+++ G I
Sbjct: 379 FNPQGNRLLTGSSDKTARIWD----AQTGQCLQVLEGHT----DEIFSCAFNYKGDIIIT 430
Query: 941 GSADRFVYVW 970
GS D +W
Sbjct: 431 GSKDNTCRIW 440
Score = 99.4 bits (246), Expect = 7e-21
Identities = 50/206 (24%), Positives = 97/206 (47%), Gaps = 2/206 (0%)
Frame = +2
Query: 209 IMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYN 388
+ L+GH E+ F+ +G+ + + FD + +W Y TL GH + +N
Sbjct: 238 VFTLTGHSAEIISLSFNTSGNRIITGSFDHTVTVWEADTGRKVY-TLIGHCAEISSAVFN 296
Query: 389 TDGSMLFSASTDKTVAVWDSETGERVKRLKGH-TSFVNSCYPARRGPQLVCTGSDDGTVK 565
D S++ + S DKT +WD+ G+ V L GH ++SC+ +L+ T S DGT +
Sbjct: 297 WDCSLILTGSMDKTCKLWDAVNGKCVATLTGHDDEILDSCFDYT--GKLIATASADGTAR 354
Query: 566 LWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD 742
++ + + + + ++ ++FN +++++G D ++WD + + + GH D
Sbjct: 355 IFSAATRECVTKLEGHEGEISKISFNPQGNRLLTGSSDKTARIWDAQTGQCLQVLEGHTD 414
Query: 743 SVTXXXXXXXXXXXXXNAMDNTVRVW 820
+ + DNT R+W
Sbjct: 415 EIFSCAFNYKGDIIITGSKDNTCRIW 440
>ref|NP_001033649.1| WD repeat domain 51A [Bos taurus]
Length = 407
Score = 121 bits (303), Expect = 2e-27
Identities = 86/289 (29%), Positives = 126/289 (43%), Gaps = 1/289 (0%)
Frame = +2
Query: 224 GHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSM 403
GH V F N LAS D +++W++ Y GH AV ++++ G +
Sbjct: 17 GHRDAVTSVDFSLNTKQLASGSMDSCLMVWHMKPQTRAYR-FAGHKDAVTCVNFSPSGHL 75
Query: 404 LFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDI-R 580
L S S DKTV +W + HT+ V S + G V T SDD TVK+W R
Sbjct: 76 LASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFV-TASDDKTVKVWSTHR 134
Query: 581 KKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXX 760
+K Q+ V F+ I+S D +K+WD + ++ H VT
Sbjct: 135 QKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCEHGGFVTYVD 194
Query: 761 XXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAA 940
MDNTV+VWDVR R ++ +Q +H+ N L S+ P G+ +
Sbjct: 195 FHPSGTCIAAAGMDNTVKVWDVRT----HRLLQHYQ--LHSAAVNAL--SFHPSGNYLVT 246
Query: 941 GSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDKRL 1087
S+D + + D R+LY L GH G VAF S SD+++
Sbjct: 247 ASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQV 295
Score = 108 bits (271), Expect = 9e-24
Identities = 70/253 (27%), Positives = 122/253 (48%), Gaps = 3/253 (1%)
Frame = +2
Query: 221 SGHEGEVYCCKFHPNGSTLASAGFDRLILLW--NVYGDCDNYATLKGHSGAVMELHYNTD 394
+GH+ V C F P+G LAS D+ + +W NV G+ + H+ V +H+ +D
Sbjct: 58 AGHKDAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKGES---TVFRAHTATVRSVHFCSD 114
Query: 395 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 574
G +AS DKTV VW + + + L H ++V C +L+ + SDD TVKLWD
Sbjct: 115 GQSFVTASDDKTVKVWSTHRQKFLFSLSQHINWVR-CAKFSPDGRLIVSASDDKTVKLWD 173
Query: 575 IRKKAAIQTF-QNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 751
+ + ++ ++ V V F+ + I + G+DN +KVWD+R ++L + H+ +V
Sbjct: 174 KTSRECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVN 233
Query: 752 XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 931
+ D+T+++ D+ + R + +H + ++S G
Sbjct: 234 ALSFHPSGNYLVTASSDSTLKILDLM----EGRLLY----TLHGHQGPATTVAFSRTGEY 285
Query: 932 IAAGSADRFVYVW 970
A+G +D V VW
Sbjct: 286 FASGGSDEQVMVW 298
Score = 100 bits (249), Expect = 3e-21
Identities = 67/250 (26%), Positives = 110/250 (44%), Gaps = 4/250 (1%)
Frame = +2
Query: 350 KGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQ 529
KGH AV + ++ + L S S D + VW + R R GH V +C
Sbjct: 16 KGHRDAVTSVDFSLNTKQLASGSMDSCLMVWHMKPQTRAYRFAGHKDAV-TCVNFSPSGH 74
Query: 530 LVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQ 706
L+ +GS D TV++W K F+ +T V +V F ++ D +KVW +
Sbjct: 75 LLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVWSTHR 134
Query: 707 NKLTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNF 886
K +++ H + V + D TV++WD K + VH++
Sbjct: 135 QKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWD-----------KTSRECVHSY 183
Query: 887 EKN---LLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPI 1057
++ + + P G+ IAA D V VWD + R+L H+ ++N ++FHP
Sbjct: 184 CEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNALSFHPSGNY 243
Query: 1058 ILSASSDKRL 1087
+++ASSD L
Sbjct: 244 LVTASSDSTL 253
Score = 75.9 bits (185), Expect = 8e-14
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 7/166 (4%)
Frame = +2
Query: 218 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWN------VYGDCDNYATLKGHSGAVMEL 379
LS H V C KF P+G + SA D+ + LW+ V+ C+ H G V +
Sbjct: 141 LSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCE-------HGGFVTYV 193
Query: 380 HYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGT 559
++ G+ + +A D TV VWD T ++ + H++ VN+ G LV T S D T
Sbjct: 194 DFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNALSFHPSGNYLV-TASSDST 252
Query: 560 VKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVW 694
+K+ D+ + + T + V F+ T + SGG D + VW
Sbjct: 253 LKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVMVW 298
Score = 74.3 bits (181), Expect = 2e-13
Identities = 51/196 (26%), Positives = 83/196 (42%), Gaps = 34/196 (17%)
Frame = +2
Query: 620 VLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNAM 799
V +V F+ + Q+ SG +D+ + VW ++ Y GH D+VT +
Sbjct: 22 VTSVDFSLNTKQLASGSMDSCLMVWHMKPQTRAYRFAGHKDAVTCVNFSPSGHLLASGSR 81
Query: 800 DNTVRVW-------------------------DVRPF--APKERCVKIFQGNVHNF---- 886
D TVR+W D + F A ++ VK++ + F
Sbjct: 82 DKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVWSTHRQKFLFSL 141
Query: 887 --EKNLLRCS-WSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPI 1057
N +RC+ +SPDG I + S D+ V +WD TSR ++ H G + V FHP
Sbjct: 142 SQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCEHGGFVTYVDFHPSGTC 201
Query: 1058 ILSASSDKRLYTGEIQ 1105
I +A D + +++
Sbjct: 202 IAAAGMDNTVKVWDVR 217
>ref|XP_869200.1| PREDICTED: similar to Autophagy protein 16-like (APG16-like) isoform
3 [Bos taurus]
Length = 607
Score = 120 bits (301), Expect = 3e-27
Identities = 82/282 (29%), Positives = 133/282 (47%), Gaps = 5/282 (1%)
Frame = +2
Query: 215 LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD-CDNYATLKGHSGAVMELHYNT 391
+ H+GEV +F P LA+ G DR + LW V+GD C+ +L G + + + +++
Sbjct: 317 VFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGDKCEFKGSLSGSNAGITSIEFDS 376
Query: 392 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 571
GS L +AS D +W + L GH+ V S ++V +GS D T+KLW
Sbjct: 377 AGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNARIV-SGSHDRTLKLW 435
Query: 572 DIRKKAAIQTFQNTYQVLAVTFND---TSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD 742
D+R K I+T + ND T ++SG D I+ WD+R + M
Sbjct: 436 DLRSKVCIKTV-----FAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESIVREME-LLG 489
Query: 743 SVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPD 922
+T + D+ +++ D+R A ++ F + R +SPD
Sbjct: 490 KITALDLNPERTELLSCSRDDLLKIIDLRINAVRQ----TFSAPGFKCGSDWTRAVFSPD 545
Query: 923 GSKIAAGSADRFVYVWDTTSRRILYKL-PGHAGSINEVAFHP 1045
GS +AAG+A+ +Y+W+ S ++ L H+ SIN VA+ P
Sbjct: 546 GSYVAAGAAEGSLYIWNVLSGKVEKVLSKHHSSSINAVAWSP 587
>ref|XP_877191.1| PREDICTED: similar to Autophagy protein 16-like (APG16-like) isoform
6 [Bos taurus]
Length = 588
Score = 120 bits (301), Expect = 3e-27
Identities = 82/282 (29%), Positives = 133/282 (47%), Gaps = 5/282 (1%)
Frame = +2
Query: 215 LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD-CDNYATLKGHSGAVMELHYNT 391
+ H+GEV +F P LA+ G DR + LW V+GD C+ +L G + + + +++
Sbjct: 298 VFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGDKCEFKGSLSGSNAGITSIEFDS 357
Query: 392 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 571
GS L +AS D +W + L GH+ V S ++V +GS D T+KLW
Sbjct: 358 AGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNARIV-SGSHDRTLKLW 416
Query: 572 DIRKKAAIQTFQNTYQVLAVTFND---TSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD 742
D+R K I+T + ND T ++SG D I+ WD+R + M
Sbjct: 417 DLRSKVCIKTV-----FAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESIVREME-LLG 470
Query: 743 SVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPD 922
+T + D+ +++ D+R A ++ F + R +SPD
Sbjct: 471 KITALDLNPERTELLSCSRDDLLKIIDLRINAVRQ----TFSAPGFKCGSDWTRAVFSPD 526
Query: 923 GSKIAAGSADRFVYVWDTTSRRILYKL-PGHAGSINEVAFHP 1045
GS +AAG+A+ +Y+W+ S ++ L H+ SIN VA+ P
Sbjct: 527 GSYVAAGAAEGSLYIWNVLSGKVEKVLSKHHSSSINAVAWSP 568
>ref|XP_877095.1| PREDICTED: similar to Autophagy protein 16-like (APG16-like) isoform
5 [Bos taurus]
Length = 623
Score = 120 bits (301), Expect = 3e-27
Identities = 82/282 (29%), Positives = 133/282 (47%), Gaps = 5/282 (1%)
Frame = +2
Query: 215 LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD-CDNYATLKGHSGAVMELHYNT 391
+ H+GEV +F P LA+ G DR + LW V+GD C+ +L G + + + +++
Sbjct: 333 VFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGDKCEFKGSLSGSNAGITSIEFDS 392
Query: 392 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 571
GS L +AS D +W + L GH+ V S ++V +GS D T+KLW
Sbjct: 393 AGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNARIV-SGSHDRTLKLW 451
Query: 572 DIRKKAAIQTFQNTYQVLAVTFND---TSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD 742
D+R K I+T + ND T ++SG D I+ WD+R + M
Sbjct: 452 DLRSKVCIKTV-----FAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESIVREME-LLG 505
Query: 743 SVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPD 922
+T + D+ +++ D+R A ++ F + R +SPD
Sbjct: 506 KITALDLNPERTELLSCSRDDLLKIIDLRINAVRQ----TFSAPGFKCGSDWTRAVFSPD 561
Query: 923 GSKIAAGSADRFVYVWDTTSRRILYKL-PGHAGSINEVAFHP 1045
GS +AAG+A+ +Y+W+ S ++ L H+ SIN VA+ P
Sbjct: 562 GSYVAAGAAEGSLYIWNVLSGKVEKVLSKHHSSSINAVAWSP 603
>ref|XP_603483.2| PREDICTED: similar to WD repeat domain 51B [Bos taurus]
Length = 495
Score = 111 bits (277), Expect = 2e-24
Identities = 69/289 (23%), Positives = 134/289 (46%), Gaps = 1/289 (0%)
Frame = +2
Query: 224 GHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSM 403
GH+ + F PNG LA+ +D ++LW++ + + GH + + ++ G++
Sbjct: 33 GHKAAITSVDFSPNGKQLATGSWDTFLMLWSLRPQARAFRYV-GHKDVITSVQFSPLGNL 91
Query: 404 LFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDI-R 580
L SAS D+T+ +W + + K HT+ V S + G Q + + S+D ++K+W++ R
Sbjct: 92 LASASRDRTIRLWIPDKRGKSSEFKAHTAPVRSVDFSADG-QFLASASEDKSIKVWNMYR 150
Query: 581 KKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXX 760
++ +++T+ V F+ I+S D IK+WD +
Sbjct: 151 QRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDFVGFANFVA 210
Query: 761 XXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAA 940
D+TV++WD+R + ++ +Q VH+ N + S+ P G+ +
Sbjct: 211 FNPNGTCIASAGSDHTVKIWDIRV----NKLLQHYQ--VHSGGVNCV--SFHPSGNYLIT 262
Query: 941 GSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDKRL 1087
S+D + + D R++Y L GH G + V+F + S +D ++
Sbjct: 263 ASSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGELFTSGGADAQV 311
Score = 108 bits (269), Expect = 2e-23
Identities = 76/268 (28%), Positives = 118/268 (44%), Gaps = 1/268 (0%)
Frame = +2
Query: 200 QAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMEL 379
QA GH+ + +F P G+ LASA DR I LW + + K H+ V +
Sbjct: 67 QARAFRYVGHKDVITSVQFSPLGNLLASASRDRTIRLW-IPDKRGKSSEFKAHTAPVRSV 125
Query: 380 HYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGT 559
++ DG L SAS DK++ VW+ + L HT +V C +L+ + S+D T
Sbjct: 126 DFSADGQFLASASEDKSIKVWNMYRQRFLYSLYRHTHWVR-CAKFSPDGRLIVSCSEDKT 184
Query: 560 VKLWDIRKKAAIQTFQNTYQVLA-VTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGH 736
+K+WD K + F + V FN I S G D+ +K+WD+R NKL + H
Sbjct: 185 IKIWDTTNKQCVNNFSDFVGFANFVAFNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQVH 244
Query: 737 ADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWS 916
+ V + D T+++ D+ + R + QG+ + S+S
Sbjct: 245 SGGVNCVSFHPSGNYLITASSDGTLKILDLL----EGRLIYTLQGHT----GPVFTVSFS 296
Query: 917 PDGSKIAAGSADRFVYVWDTTSRRILYK 1000
G +G AD V +W T + YK
Sbjct: 297 KGGELFTSGGADAQVLLWRTNFDELNYK 324
Score = 103 bits (256), Expect = 5e-22
Identities = 67/249 (26%), Positives = 115/249 (46%), Gaps = 3/249 (1%)
Frame = +2
Query: 350 KGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQ 529
KGH A+ + ++ +G L + S D + +W R R GH + S + G
Sbjct: 32 KGHKAAITSVDFSPNGKQLATGSWDTFLMLWSLRPQARAFRYVGHKDVITSVQFSPLG-N 90
Query: 530 LVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQ 706
L+ + S D T++LW K+ F+ +T V +V F+ + S D IKVW++ +
Sbjct: 91 LLASASRDRTIRLWIPDKRGKSSEFKAHTAPVRSVDFSADGQFLASASEDKSIKVWNMYR 150
Query: 707 NKLTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVH-- 880
+ Y++ H V + D T+++WD ++CV F V
Sbjct: 151 QRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTT----NKQCVNNFSDFVGFA 206
Query: 881 NFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPII 1060
NF +++P+G+ IA+ +D V +WD ++L H+G +N V+FHP +
Sbjct: 207 NF------VAFNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQVHSGGVNCVSFHPSGNYL 260
Query: 1061 LSASSDKRL 1087
++ASSD L
Sbjct: 261 ITASSDGTL 269
>ref|XP_588289.2| PREDICTED: similar to APG16L beta isoform [Bos taurus]
Length = 616
Score = 110 bits (275), Expect = 3e-24
Identities = 84/277 (30%), Positives = 128/277 (46%), Gaps = 2/277 (0%)
Frame = +2
Query: 215 LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYNT 391
+L H EV +F PN S LA+ G DRLILLWNV G TL+G G++ + ++
Sbjct: 328 VLDAHLSEVSAVRFGPNSSLLATGGADRLILLWNVVGGHLKANQTLEGAGGSITSVDFDP 387
Query: 392 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 571
GS L +A+ +K +W + + L GHT V + Q V TGS D TVK W
Sbjct: 388 SGSQLLAATYNKAAQLWKVGEAQSKETLSGHTDKVTAAKFKLTRHQAV-TGSRDRTVKEW 446
Query: 572 DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 751
D+ + +T V D IISG D I+ WD R + T + VT
Sbjct: 447 DLCRAYCSRTINVLSYCNDVVCGD--HIIISGHNDQKIRFWDSRGPRCTQVIPVQG-RVT 503
Query: 752 XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 931
+ D+T++V D+R ++F+ + + + +SPD S
Sbjct: 504 SLSLSHDQLHLLSCSRDDTLKVIDLR----VSNIRQVFRADGFKCGSDWTKAVFSPDRSY 559
Query: 932 IAAGSADRFVYVWDTTSRRILYKLPG-HAGSINEVAF 1039
AGS D +Y+W+ + ++ L G H+ ++N VA+
Sbjct: 560 ALAGSWDGALYIWNVDTGKLESSLRGPHSAAVNAVAW 596
>ref|NP_777088.1| platelet-activating factor acetylhydrolase, isoform Ib, alpha subunit
(45kD) [Bos taurus]
Length = 410
Score = 109 bits (273), Expect = 5e-24
Identities = 81/274 (29%), Positives = 124/274 (45%), Gaps = 22/274 (8%)
Frame = +2
Query: 332 DNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYP 511
+ YA L GH V + ++ S++ SAS D T+ VWD ETG+ + LKGHT V
Sbjct: 100 EKYA-LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVEDISF 158
Query: 512 ARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIK 688
G +L+ + S D T+KLWD + I+T + + V +V D I+S D IK
Sbjct: 159 DHSG-KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIK 217
Query: 689 VWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQ 868
+W+++ T GH + V + D TVRVW V A KE ++ +
Sbjct: 218 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV---ATKECKAELRE 274
Query: 869 GNVHNFEKNLLRC-SWSPDGSK--------------------IAAGSADRFVYVWDTTSR 985
++++ C SW+P+ S + +GS D+ + +WD ++
Sbjct: 275 ------HEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG 328
Query: 986 RILYKLPGHAGSINEVAFHPDEPIILSASSDKRL 1087
L L GH + V FH ILS + DK L
Sbjct: 329 MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTL 362
Score = 102 bits (255), Expect = 6e-22
Identities = 79/315 (25%), Positives = 136/315 (43%), Gaps = 21/315 (6%)
Frame = +2
Query: 218 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDG 397
LSGH V FHP S + SA D I +W+ Y D TLKGH+ +V ++ ++ G
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWD-YETGDFERTLKGHTDSVEDISFDHSG 162
Query: 398 SMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDI 577
+L S S D T+ +WD + E ++ + GH V+S G +V + S D T+K+W++
Sbjct: 163 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIV-SASRDKTIKMWEV 221
Query: 578 RKKAAIQTFQNTYQ-VLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTX 754
+ ++TF + V V N I S D ++VW + + +R H V
Sbjct: 222 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVEC 281
Query: 755 XXXXXXXXXXXXN--------------------AMDNTVRVWDVRPFAPKERCVKIFQGN 874
+ + D T+++WDV C+ G+
Sbjct: 282 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST----GMCLMTLVGH 337
Query: 875 VHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEP 1054
N+ + +L + G I + + D+ + VWD ++R + L H + + FH P
Sbjct: 338 -DNWVRGVL---FHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP 393
Query: 1055 IILSASSDKRLYTGE 1099
+++ S D+ + E
Sbjct: 394 YVVTGSVDQTVKVWE 408
Score = 88.6 bits (218), Expect = 1e-17
Identities = 66/229 (28%), Positives = 97/229 (42%), Gaps = 22/229 (9%)
Frame = +2
Query: 209 IMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHY 385
I + GH+ V PNG + SA D+ I +W V G C T GH V +
Sbjct: 185 IRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYC--VKTFTGHREWVRMVRP 242
Query: 386 NTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFV-------NSCYPA---------- 514
N DG+++ S S D+TV VW T E L+ H V S Y +
Sbjct: 243 NQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETK 302
Query: 515 ---RRGPQLVCTGSDDGTVKLWDIRKKAAIQTF-QNTYQVLAVTFNDTSDQIISGGIDND 682
+ GP L+ +GS D T+K+WD+ + T + V V F+ I+S D
Sbjct: 303 KSGKPGPFLL-SGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT 361
Query: 683 IKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVR 829
++VWD + + T+ H VT ++D TV+VW+ R
Sbjct: 362 LRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 57.0 bits (136), Expect = 4e-08
Identities = 48/188 (25%), Positives = 78/188 (41%), Gaps = 3/188 (1%)
Frame = +2
Query: 578 RKKAAIQTFQNTYQVLAVTFNDTSDQIISGGI---DNDIKVWDLRQNKLTYTMRGHADSV 748
+K ++ Q L N+ ++ SGG D K W R + Y + GH V
Sbjct: 53 KKWTSVIRLQKKVMELESKLNEAKEEFTSGGPLGQKRDPKEWIPRPPE-KYALSGHRSPV 111
Query: 749 TXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGS 928
T + D T++VWD ER +K +V + S+ G
Sbjct: 112 TRVIFHPVFSVMVSASEDATIKVWDYET-GDFERTLKGHTDSVEDI-------SFDHSGK 163
Query: 929 KIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDKRLYTGEIQ* 1108
+A+ SAD + +WD + + GH +++ VA P+ I+SAS DK + E+Q
Sbjct: 164 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQT 223
Query: 1109 RYGMEDST 1132
Y ++ T
Sbjct: 224 GYCVKTFT 231
Database: RefSeqBP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 16,112,626
Number of sequences in database: 33,508
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,289,914
Number of Sequences: 33508
Number of extensions: 1231585
Number of successful extensions: 6742
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 2960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4699
length of database: 16,112,626
effective HSP length: 106
effective length of database: 12,560,778
effective search space used: 5212722870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0112_F03
(1567 letters)
Database: RefSeqCP
33,732 sequences; 19,266,565 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854730.1| PREDICTED: similar to WD-repeat protein 57 [Can... 644 0.0
Alignment gi|XP_850117.1| PREDICTED: similar to WD repeat domain 5 [Canis... 147 3e-35
Alignment gi|XP_534593.2| PREDICTED: similar to CG7568-PA [Canis familiaris] 135 8e-32
Alignment gi|XP_541857.2| PREDICTED: similar to WD repeat domain 51A isof... 122 1e-27
Alignment gi|XP_862068.1| PREDICTED: similar to Autophagy protein 16-like... 120 4e-27
Alignment gi|XP_534608.2| PREDICTED: similar to Autophagy protein 16-like... 120 4e-27
Alignment gi|XP_850664.1| PREDICTED: similar to Autophagy protein 16-like... 120 4e-27
Alignment gi|XP_862542.1| PREDICTED: similar to Katanin p80 WD40-containi... 118 2e-26
Alignment gi|XP_850865.1| PREDICTED: similar to Katanin p80 WD40-containi... 118 2e-26
Alignment gi|XP_532646.2| PREDICTED: similar to WD repeat domain 51B [Can... 114 3e-25
>ref|XP_854730.1| PREDICTED: similar to WD-repeat protein 57 [Canis familiaris]
Length = 358
Score = 644 bits (1660), Expect = 0.0
Identities = 316/358 (88%), Positives = 316/358 (88%)
Frame = +2
Query: 32 MIEQQKRKGPELPLVPVKRQRHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCSSLQAPI 211
MIEQQKRKGPELPLVPVKRQRHE RCSSLQAPI
Sbjct: 1 MIEQQKRKGPELPLVPVKRQRHELLLGAAGSGPGAGQQQTAPGALLQAGPPRCSSLQAPI 60
Query: 212 MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT 391
MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT
Sbjct: 61 MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT 120
Query: 392 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 571
DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW
Sbjct: 121 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 180
Query: 572 DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 751
DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT
Sbjct: 181 DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 240
Query: 752 XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 931
NAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK
Sbjct: 241 GLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 300
Query: 932 IAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDKRLYTGEIQ 1105
IAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDKRLY GEIQ
Sbjct: 301 IAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDKRLYMGEIQ 358
>ref|XP_850117.1| PREDICTED: similar to WD repeat domain 5 [Canis familiaris]
Length = 334
Score = 147 bits (371), Expect = 3e-35
Identities = 94/290 (32%), Positives = 149/290 (51%), Gaps = 5/290 (1%)
Frame = +2
Query: 218 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDG 397
L+GH V KF PNG LAS+ D+LI +W Y D T+ GH + ++ +++D
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLGISDVAWSSDS 99
Query: 398 SMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQ--LVCTGSDDGTVKLW 571
++L SAS DKT+ +WD +G+ +K LKGH+++V C PQ L+ +GS D +V++W
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC---NFNPQSNLIVSGSFDESVRIW 156
Query: 572 DIRKKAAIQTF-QNTYQVLAVTFNDTSDQIISGGIDNDI-KVWDLRQNKLTYTMRGHADS 745
D++ ++T ++ V AV FN I+S D K + + +
Sbjct: 157 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCGKTGNAASRCMKLILDDDNPP 216
Query: 746 VTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDG 925
V+ +DNT+++WD K +C+K + G H EK + ++S G
Sbjct: 217 VSFVKFSPNGKYILAATLDNTLKLWDY----SKGKCLKTYTG--HKNEKYCIFANFSVTG 270
Query: 926 SK-IAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSAS 1072
K I +GS D VY+W+ ++ I+ KL GH + A HP E II SA+
Sbjct: 271 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 320
Score = 93.2 bits (230), Expect = 6e-19
Identities = 56/208 (26%), Positives = 97/208 (46%), Gaps = 7/208 (3%)
Frame = +2
Query: 218 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYNTD 394
L GH V+CC F+P + + S FD + +W+V G C TL HS V +H+N D
Sbjct: 125 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRD 182
Query: 395 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 574
GS++ S+S D + +K + + S + + + D T+KLWD
Sbjct: 183 GSLIVSSSYDGLCGKTGNAASRCMKLILDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242
Query: 575 IRKKAAIQTF---QNTYQVLAVTFNDTSDQ-IISGGIDNDIKVWDLRQNKLTYTMRGHAD 742
K ++T+ +N + F+ T + I+SG DN + +W+L+ ++ ++GH D
Sbjct: 243 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 302
Query: 743 SVTXXXXXXXXXXXXXNAMDN--TVRVW 820
V A++N T+++W
Sbjct: 303 VVISTACHPTENIIASAALENDKTIKLW 330
Score = 73.9 bits (180), Expect = 4e-13
Identities = 41/157 (26%), Positives = 74/157 (47%)
Frame = +2
Query: 608 NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXX 787
+T V +V F+ + + S D IK+W K T+ GH ++
Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 103
Query: 788 XNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYV 967
+ D T+++WDV +C+K +G+ + C+++P + I +GS D V +
Sbjct: 104 SASDDKTLKIWDVS----SGKCLKTLKGH----SNYVFCCNFNPQSNLIVSGSFDESVRI 155
Query: 968 WDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSD 1078
WD + + L LP H+ ++ V F+ D +I+S+S D
Sbjct: 156 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 192
Score = 57.0 bits (136), Expect = 5e-08
Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 7/127 (5%)
Frame = +2
Query: 212 MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYN- 388
++L V KF PNG + +A D + LW+ Y T GH + N
Sbjct: 208 LILDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD-YSKGKCLKTYTGHKNEKYCIFANF 266
Query: 389 --TDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFV--NSCYPARRGPQLVCTGS--D 550
T G + S S D V +W+ +T E V++L+GHT V +C+P ++ + + +
Sbjct: 267 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE---NIIASAALEN 323
Query: 551 DGTVKLW 571
D T+KLW
Sbjct: 324 DKTIKLW 330
Score = 50.1 bits (118), Expect = 6e-06
Identities = 26/131 (19%), Positives = 58/131 (44%)
Frame = +2
Query: 713 LTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEK 892
L +T+ GH +V+ ++ D +++W F+ + +
Sbjct: 37 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--------FEKTISGHKL 88
Query: 893 NLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSAS 1072
+ +WS D + + + S D+ + +WD +S + L L GH+ + F+P +I+S S
Sbjct: 89 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 148
Query: 1073 SDKRLYTGEIQ 1105
D+ + +++
Sbjct: 149 FDESVRIWDVK 159
>ref|XP_534593.2| PREDICTED: similar to CG7568-PA [Canis familiaris]
Length = 415
Score = 135 bits (341), Expect = 8e-32
Identities = 80/275 (29%), Positives = 136/275 (49%), Gaps = 2/275 (0%)
Frame = +2
Query: 263 NGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTD-GSMLFSASTDKTVAV 439
+GS + +DR LW+ + TL+GH V + +N G + + S DKT +
Sbjct: 103 SGSCFITGSYDRTCKLWDTASG-EELHTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKL 161
Query: 440 WDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTY 616
W ETG+ +GHT+ + C LV TGS D T KLWDI+ + T + ++
Sbjct: 162 WSVETGKCYHTFRGHTAEI-VCLSFNPQSTLVATGSMDTTAKLWDIQSGEEVFTLRGHSA 220
Query: 617 QVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNA 796
++++++FN + D+I++G D+ + VW+ + YT+ GH ++ +
Sbjct: 221 EIISLSFNTSGDRIVTGSFDHTVAVWEADTGRKVYTLIGHCAEISSALFNWDCSLILTGS 280
Query: 797 MDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDT 976
MD T +WD A +CV G+ + +L + G IA SAD V+
Sbjct: 281 MDKTCMLWD----ASNGKCVATLTGH----DDEILDSCFDYTGKLIATASADGTARVFSA 332
Query: 977 TSRRILYKLPGHAGSINEVAFHPDEPIILSASSDK 1081
+R+ L KL GH G I++++F+P +L+ S+D+
Sbjct: 333 ATRKCLTKLEGHEGEISKISFNPQGNRLLTGSADE 367
Score = 134 bits (338), Expect = 2e-31
Identities = 84/290 (28%), Positives = 139/290 (47%), Gaps = 3/290 (1%)
Frame = +2
Query: 218 LSGHEGEVYCCKFH-PNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYNT 391
L GH VY F+ P G +A+ FD+ LW+V G C Y T +GH+ ++ L +N
Sbjct: 130 LEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKC--YHTFRGHTAEIVCLSFNP 187
Query: 392 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 571
+++ + S D T +WD ++GE V L+GH++ + S G ++V TGS D TV +W
Sbjct: 188 QSTLVATGSMDTTAKLWDIQSGEEVFTLRGHSAEIISLSFNTSGDRIV-TGSFDHTVAVW 246
Query: 572 DIRKKAAIQT-FQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSV 748
+ + T + ++ + FN I++G +D +WD K T+ GH D +
Sbjct: 247 EADTGRKVYTLIGHCAEISSALFNWDCSLILTGSMDKTCMLWDASNGKCVATLTGHDDEI 306
Query: 749 TXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGS 928
+ D T RV+ A +C+ +G+ E + + S++P G+
Sbjct: 307 LDSCFDYTGKLIATASADGTARVFS----AATRKCLTKLEGH----EGEISKISFNPQGN 358
Query: 929 KIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSD 1078
++ GSAD +WD + + L L GH I AF+ II++ S D
Sbjct: 359 RLLTGSADETARIWDAQTGQCLQVLEGHTDEIFSCAFNYKGDIIITGSKD 408
Score = 115 bits (288), Expect = 1e-25
Identities = 67/250 (26%), Positives = 113/250 (45%), Gaps = 1/250 (0%)
Frame = +2
Query: 224 GHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSM 403
GH E+ C F+P + +A+ D LW++ + TL+GHS ++ L +NT G
Sbjct: 175 GHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQSG-EEVFTLRGHSAEIISLSFNTSGDR 233
Query: 404 LFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRK 583
+ + S D TVAVW+++TG +V L GH + ++S L+ TGS D T LWD
Sbjct: 234 IVTGSFDHTVAVWEADTGRKVYTLIGHCAEISSAL-FNWDCSLILTGSMDKTCMLWDASN 292
Query: 584 KAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXX 760
+ T + ++L F+ T I + D +V+ K + GH ++
Sbjct: 293 GKCVATLTGHDDEILDSCFDYTGKLIATASADGTARVFSAATRKCLTKLEGHEGEISKIS 352
Query: 761 XXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAA 940
+ D T R+WD A +C+++ +G+ + C+++ G I
Sbjct: 353 FNPQGNRLLTGSADETARIWD----AQTGQCLQVLEGHT----DEIFSCAFNYKGDIIIT 404
Query: 941 GSADRFVYVW 970
GS D +W
Sbjct: 405 GSKDNTCRIW 414
Score = 99.0 bits (245), Expect = 1e-20
Identities = 50/206 (24%), Positives = 95/206 (46%), Gaps = 2/206 (0%)
Frame = +2
Query: 209 IMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYN 388
+ L GH E+ F+ +G + + FD + +W Y TL GH + +N
Sbjct: 212 VFTLRGHSAEIISLSFNTSGDRIVTGSFDHTVAVWEADTGRKVY-TLIGHCAEISSALFN 270
Query: 389 TDGSMLFSASTDKTVAVWDSETGERVKRLKGH-TSFVNSCYPARRGPQLVCTGSDDGTVK 565
D S++ + S DKT +WD+ G+ V L GH ++SC+ +L+ T S DGT +
Sbjct: 271 WDCSLILTGSMDKTCMLWDASNGKCVATLTGHDDEILDSCFDYT--GKLIATASADGTAR 328
Query: 566 LWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD 742
++ + + + + ++ ++FN +++++G D ++WD + + + GH D
Sbjct: 329 VFSAATRKCLTKLEGHEGEISKISFNPQGNRLLTGSADETARIWDAQTGQCLQVLEGHTD 388
Query: 743 SVTXXXXXXXXXXXXXNAMDNTVRVW 820
+ + DNT R+W
Sbjct: 389 EIFSCAFNYKGDIIITGSKDNTCRIW 414
Score = 92.4 bits (228), Expect = 1e-18
Identities = 63/238 (26%), Positives = 104/238 (43%), Gaps = 12/238 (5%)
Frame = +2
Query: 404 LFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGP----------QLVCTGSDD 553
L +AS + V + +++++ HT ++ A P TGS D
Sbjct: 54 LITASRSEQVKLLIQRLQDKLRQHSNHTFYLFKVLRAHILPLTNVALNKSGSCFITGSYD 113
Query: 554 GTVKLWDIRKKAAIQTFQNTYQVL-AVTFNDT-SDQIISGGIDNDIKVWDLRQNKLTYTM 727
T KLWD + T + V+ A+ FN+ D+I +G D K+W + K +T
Sbjct: 114 RTCKLWDTASGEELHTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTF 173
Query: 728 RGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRC 907
RGH + +MD T ++WD++ ++F H+ E ++
Sbjct: 174 RGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQSGE------EVFTLRGHSAE--IISL 225
Query: 908 SWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDK 1081
S++ G +I GS D V VW+ + R +Y L GH I+ F+ D +IL+ S DK
Sbjct: 226 SFNTSGDRIVTGSFDHTVAVWEADTGRKVYTLIGHCAEISSALFNWDCSLILTGSMDK 283
>ref|XP_541857.2| PREDICTED: similar to WD repeat domain 51A isoform 1 [Canis
familiaris]
Length = 406
Score = 122 bits (306), Expect = 1e-27
Identities = 86/289 (29%), Positives = 128/289 (44%), Gaps = 1/289 (0%)
Frame = +2
Query: 224 GHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSM 403
GH + F N LAS D +++W++ Y GH AV ++++ G +
Sbjct: 17 GHRDAITSVDFSLNTKQLASGSMDSCLMVWHMKPQSRAYR-FAGHKDAVTCVNFSPSGHL 75
Query: 404 LFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDI-R 580
L S S DKTV +W + HT+ V S + G LV T SDD TVK+W R
Sbjct: 76 LASGSRDKTVRIWIPNVKGESTVFRAHTATVRSVHFCSDGQSLV-TASDDKTVKVWSTHR 134
Query: 581 KKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXX 760
+K Q+ V F+ I+S D +K+WD + ++ H VT
Sbjct: 135 QKFLFSLSQHINWVRCARFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCEHGGFVTYVD 194
Query: 761 XXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAA 940
+MDNTV+VWDVR R ++ +Q +H+ N L S+ P G+ +
Sbjct: 195 FHPSGTCIAAASMDNTVKVWDVRT----HRLLQHYQ--LHSAAVNAL--SFHPSGNYLLT 246
Query: 941 GSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDKRL 1087
S+D + + D R+LY L GH G VAF S SD+++
Sbjct: 247 ASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQV 295
Score = 108 bits (269), Expect = 2e-23
Identities = 71/263 (26%), Positives = 126/263 (47%), Gaps = 3/263 (1%)
Frame = +2
Query: 221 SGHEGEVYCCKFHPNGSTLASAGFDRLILLW--NVYGDCDNYATLKGHSGAVMELHYNTD 394
+GH+ V C F P+G LAS D+ + +W NV G+ + H+ V +H+ +D
Sbjct: 58 AGHKDAVTCVNFSPSGHLLASGSRDKTVRIWIPNVKGES---TVFRAHTATVRSVHFCSD 114
Query: 395 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 574
G L +AS DKTV VW + + + L H ++V C +L+ + SDD TVKLWD
Sbjct: 115 GQSLVTASDDKTVKVWSTHRQKFLFSLSQHINWVR-CARFSPDGRLIVSASDDKTVKLWD 173
Query: 575 IRKKAAIQTF-QNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 751
+ + ++ ++ V V F+ + I + +DN +KVWD+R ++L + H+ +V
Sbjct: 174 KTSRECVHSYCEHGGFVTYVDFHPSGTCIAAASMDNTVKVWDVRTHRLLQHYQLHSAAVN 233
Query: 752 XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 931
+ D+T+++ D+ + R + +H + ++S G
Sbjct: 234 ALSFHPSGNYLLTASSDSTLKILDLM----EGRLLY----TLHGHQGPATTVAFSRTGEY 285
Query: 932 IAAGSADRFVYVWDTTSRRILYK 1000
A+G +D V VW + + Y+
Sbjct: 286 FASGGSDEQVMVWKSNFDVVDYR 308
Score = 103 bits (258), Expect = 4e-22
Identities = 68/250 (27%), Positives = 112/250 (44%), Gaps = 4/250 (1%)
Frame = +2
Query: 350 KGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQ 529
KGH A+ + ++ + L S S D + VW + R R GH V +C
Sbjct: 16 KGHRDAITSVDFSLNTKQLASGSMDSCLMVWHMKPQSRAYRFAGHKDAV-TCVNFSPSGH 74
Query: 530 LVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQ 706
L+ +GS D TV++W K F+ +T V +V F +++ D +KVW +
Sbjct: 75 LLASGSRDKTVRIWIPNVKGESTVFRAHTATVRSVHFCSDGQSLVTASDDKTVKVWSTHR 134
Query: 707 NKLTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNF 886
K +++ H + V + D TV++WD K + VH++
Sbjct: 135 QKFLFSLSQHINWVRCARFSPDGRLIVSASDDKTVKLWD-----------KTSRECVHSY 183
Query: 887 EKN---LLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPI 1057
++ + + P G+ IAA S D V VWD + R+L H+ ++N ++FHP
Sbjct: 184 CEHGGFVTYVDFHPSGTCIAAASMDNTVKVWDVRTHRLLQHYQLHSAAVNALSFHPSGNY 243
Query: 1058 ILSASSDKRL 1087
+L+ASSD L
Sbjct: 244 LLTASSDSTL 253
Score = 75.1 bits (183), Expect = 2e-13
Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 7/166 (4%)
Frame = +2
Query: 218 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWN------VYGDCDNYATLKGHSGAVMEL 379
LS H V C +F P+G + SA D+ + LW+ V+ C+ H G V +
Sbjct: 141 LSQHINWVRCARFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCE-------HGGFVTYV 193
Query: 380 HYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGT 559
++ G+ + +AS D TV VWD T ++ + H++ VN+ G L+ T S D T
Sbjct: 194 DFHPSGTCIAAASMDNTVKVWDVRTHRLLQHYQLHSAAVNALSFHPSGNYLL-TASSDST 252
Query: 560 VKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVW 694
+K+ D+ + + T + V F+ T + SGG D + VW
Sbjct: 253 LKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVMVW 298
Score = 74.7 bits (182), Expect = 2e-13
Identities = 51/196 (26%), Positives = 83/196 (42%), Gaps = 34/196 (17%)
Frame = +2
Query: 620 VLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNAM 799
+ +V F+ + Q+ SG +D+ + VW ++ Y GH D+VT +
Sbjct: 22 ITSVDFSLNTKQLASGSMDSCLMVWHMKPQSRAYRFAGHKDAVTCVNFSPSGHLLASGSR 81
Query: 800 DNTVRVW----------------DVRPF-----------APKERCVKIFQGNVHNF---- 886
D TVR+W VR A ++ VK++ + F
Sbjct: 82 DKTVRIWIPNVKGESTVFRAHTATVRSVHFCSDGQSLVTASDDKTVKVWSTHRQKFLFSL 141
Query: 887 --EKNLLRCS-WSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPI 1057
N +RC+ +SPDG I + S D+ V +WD TSR ++ H G + V FHP
Sbjct: 142 SQHINWVRCARFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCEHGGFVTYVDFHPSGTC 201
Query: 1058 ILSASSDKRLYTGEIQ 1105
I +AS D + +++
Sbjct: 202 IAAASMDNTVKVWDVR 217
>ref|XP_862068.1| PREDICTED: similar to Autophagy protein 16-like (APG16-like) isoform
3 [Canis familiaris]
Length = 623
Score = 120 bits (301), Expect = 4e-27
Identities = 83/295 (28%), Positives = 134/295 (45%), Gaps = 5/295 (1%)
Frame = +2
Query: 215 LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD-CDNYATLKGHSGAVMELHYNT 391
+ H+GEV +F P LA+ G DR + LW V+GD C+ +L G + + + +++
Sbjct: 333 IFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGDKCEFKGSLSGSNAGITSIEFDS 392
Query: 392 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 571
GS L +AS D +W + L GH+ V S ++V +GS D T+KLW
Sbjct: 393 AGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNARIV-SGSHDRTLKLW 451
Query: 572 DIRKKAAIQTFQNTYQVLAVTFND---TSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD 742
D+R K I+T + ND T ++SG D I+ WD+R + M
Sbjct: 452 DLRSKVCIKTV-----FAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESIVREME-LLG 505
Query: 743 SVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPD 922
+T + D+ +++ D+R A ++ F + R +SPD
Sbjct: 506 KITALDLNPERTELLSCSRDDLLKIIDLRINAVRQ----TFSAPGFKCGSDWTRVVFSPD 561
Query: 923 GSKIAAGSADRFVYVWDTTSRRILYKL-PGHAGSINEVAFHPDEPIILSASSDKR 1084
G +AAGSA+ +Y+W S ++ L H SIN VA+ P ++S +
Sbjct: 562 GGYVAAGSAEGSLYIWSVLSGKVEKVLSKQHGSSINAVAWSPSGSHVVSVDKGSK 616
>ref|XP_534608.2| PREDICTED: similar to Autophagy protein 16-like (APG16-like) isoform
1 [Canis familiaris]
Length = 588
Score = 120 bits (301), Expect = 4e-27
Identities = 83/295 (28%), Positives = 134/295 (45%), Gaps = 5/295 (1%)
Frame = +2
Query: 215 LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD-CDNYATLKGHSGAVMELHYNT 391
+ H+GEV +F P LA+ G DR + LW V+GD C+ +L G + + + +++
Sbjct: 298 IFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGDKCEFKGSLSGSNAGITSIEFDS 357
Query: 392 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 571
GS L +AS D +W + L GH+ V S ++V +GS D T+KLW
Sbjct: 358 AGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNARIV-SGSHDRTLKLW 416
Query: 572 DIRKKAAIQTFQNTYQVLAVTFND---TSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD 742
D+R K I+T + ND T ++SG D I+ WD+R + M
Sbjct: 417 DLRSKVCIKTV-----FAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESIVREME-LLG 470
Query: 743 SVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPD 922
+T + D+ +++ D+R A ++ F + R +SPD
Sbjct: 471 KITALDLNPERTELLSCSRDDLLKIIDLRINAVRQ----TFSAPGFKCGSDWTRVVFSPD 526
Query: 923 GSKIAAGSADRFVYVWDTTSRRILYKL-PGHAGSINEVAFHPDEPIILSASSDKR 1084
G +AAGSA+ +Y+W S ++ L H SIN VA+ P ++S +
Sbjct: 527 GGYVAAGSAEGSLYIWSVLSGKVEKVLSKQHGSSINAVAWSPSGSHVVSVDKGSK 581
>ref|XP_850664.1| PREDICTED: similar to Autophagy protein 16-like (APG16-like) isoform
2 [Canis familiaris]
Length = 607
Score = 120 bits (301), Expect = 4e-27
Identities = 83/295 (28%), Positives = 134/295 (45%), Gaps = 5/295 (1%)
Frame = +2
Query: 215 LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD-CDNYATLKGHSGAVMELHYNT 391
+ H+GEV +F P LA+ G DR + LW V+GD C+ +L G + + + +++
Sbjct: 317 IFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGDKCEFKGSLSGSNAGITSIEFDS 376
Query: 392 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 571
GS L +AS D +W + L GH+ V S ++V +GS D T+KLW
Sbjct: 377 AGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNARIV-SGSHDRTLKLW 435
Query: 572 DIRKKAAIQTFQNTYQVLAVTFND---TSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD 742
D+R K I+T + ND T ++SG D I+ WD+R + M
Sbjct: 436 DLRSKVCIKTV-----FAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESIVREME-LLG 489
Query: 743 SVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPD 922
+T + D+ +++ D+R A ++ F + R +SPD
Sbjct: 490 KITALDLNPERTELLSCSRDDLLKIIDLRINAVRQ----TFSAPGFKCGSDWTRVVFSPD 545
Query: 923 GSKIAAGSADRFVYVWDTTSRRILYKL-PGHAGSINEVAFHPDEPIILSASSDKR 1084
G +AAGSA+ +Y+W S ++ L H SIN VA+ P ++S +
Sbjct: 546 GGYVAAGSAEGSLYIWSVLSGKVEKVLSKQHGSSINAVAWSPSGSHVVSVDKGSK 600
>ref|XP_862542.1| PREDICTED: similar to Katanin p80 WD40-containing subunit B1 (Katanin
p80 subunit B1) (p80 katanin) isoform 2 [Canis
familiaris]
Length = 655
Score = 118 bits (295), Expect = 2e-26
Identities = 64/216 (29%), Positives = 112/216 (51%), Gaps = 2/216 (0%)
Frame = +2
Query: 446 SETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQV 622
++T +++ + H S V+S + +L+ TG DD V LW I K I + +T V
Sbjct: 7 TKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPV 66
Query: 623 LAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNAMD 802
+V N + I++G I+VWDL K+ T+ GH ++ + D
Sbjct: 67 ESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQD 126
Query: 803 NTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRC-SWSPDGSKIAAGSADRFVYVWDTT 979
+++WD+R ++ CV ++G+ +RC +SPDG +A+ + D V +WD T
Sbjct: 127 TNIKLWDIR----RKGCVFRYRGH-----SQAVRCLRFSPDGKWLASAADDHTVKLWDLT 177
Query: 980 SRRILYKLPGHAGSINEVAFHPDEPIILSASSDKRL 1087
+ +++ + PGH G +N V FHP+E ++ S SSD+ +
Sbjct: 178 AGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTI 213
Score = 93.6 bits (231), Expect = 5e-19
Identities = 64/239 (26%), Positives = 108/239 (45%), Gaps = 2/239 (0%)
Frame = +2
Query: 263 NGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVW 442
+G LA+ G D + LW++ + +L GH+ V + NT ++ + S ++ VW
Sbjct: 32 SGRLLATGGDDCRVNLWSI-NKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVW 90
Query: 443 DSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQ- 619
D E + ++ L GH + + S G + V +GS D +KLWDIR+K + ++ Q
Sbjct: 91 DLEAAKILRTLMGHKANICSLDFHPYG-EFVASGSQDTNIKLWDIRRKGCVFRYRGHSQA 149
Query: 620 VLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNAM 799
V + F+ + S D+ +K+WDL K+ GH V +
Sbjct: 150 VRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSS 209
Query: 800 DNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRF-VYVWD 973
D T+R WD+ F C++ G V + ++PDG + +G D VY W+
Sbjct: 210 DRTIRFWDLEKFQVVS-CIEGEPGPVRS-------VLFNPDGCCLYSGCQDSLRVYGWE 260
Score = 92.8 bits (229), Expect = 8e-19
Identities = 61/237 (25%), Positives = 110/237 (46%), Gaps = 2/237 (0%)
Frame = +2
Query: 395 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 574
G +L + D V +W + L GHTS V S +L+ GS G++++WD
Sbjct: 33 GRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVR-LNTPEELIVAGSQSGSIRVWD 91
Query: 575 IRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 751
+ ++T + + ++ F+ + + SG D +IK+WD+R+ + RGH+ +V
Sbjct: 92 LEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVR 151
Query: 752 XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 931
A D+TV++WD+ + + F G H N++ + P+
Sbjct: 152 CLRFSPDGKWLASAADDHTVKLWDLTA----GKMMSEFPG--HTGPVNVVE--FHPNEYL 203
Query: 932 IAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDK-RLYTGE 1099
+A+GS+DR + WD +++ + G G + V F+PD + S D R+Y E
Sbjct: 204 LASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDSLRVYGWE 260
Score = 78.2 bits (191), Expect = 2e-14
Identities = 52/157 (33%), Positives = 74/157 (47%), Gaps = 3/157 (1%)
Frame = +2
Query: 218 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY--GDCDNYATLKGHSGAVMELHYNT 391
L GH+ + FHP G +AS D I LW++ G Y +GHS AV L ++
Sbjct: 101 LMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRY---RGHSQAVRCLRFSP 157
Query: 392 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 571
DG L SA+ D TV +WD G+ + GHT VN L+ +GS D T++ W
Sbjct: 158 DGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVN-VVEFHPNEYLLASGSSDRTIRFW 216
Query: 572 DIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDN 679
D+ K + + V +V FN + SG D+
Sbjct: 217 DLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDS 253
>ref|XP_850865.1| PREDICTED: similar to Katanin p80 WD40-containing subunit B1 (Katanin
p80 subunit B1) (p80 katanin) isoform 1 [Canis
familiaris]
Length = 655
Score = 118 bits (295), Expect = 2e-26
Identities = 64/216 (29%), Positives = 112/216 (51%), Gaps = 2/216 (0%)
Frame = +2
Query: 446 SETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQV 622
++T +++ + H S V+S + +L+ TG DD V LW I K I + +T V
Sbjct: 7 TKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPV 66
Query: 623 LAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNAMD 802
+V N + I++G I+VWDL K+ T+ GH ++ + D
Sbjct: 67 ESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQD 126
Query: 803 NTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRC-SWSPDGSKIAAGSADRFVYVWDTT 979
+++WD+R ++ CV ++G+ +RC +SPDG +A+ + D V +WD T
Sbjct: 127 TNIKLWDIR----RKGCVFRYRGH-----SQAVRCLRFSPDGKWLASAADDHTVKLWDLT 177
Query: 980 SRRILYKLPGHAGSINEVAFHPDEPIILSASSDKRL 1087
+ +++ + PGH G +N V FHP+E ++ S SSD+ +
Sbjct: 178 AGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTI 213
Score = 93.6 bits (231), Expect = 5e-19
Identities = 64/239 (26%), Positives = 108/239 (45%), Gaps = 2/239 (0%)
Frame = +2
Query: 263 NGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVW 442
+G LA+ G D + LW++ + +L GH+ V + NT ++ + S ++ VW
Sbjct: 32 SGRLLATGGDDCRVNLWSI-NKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVW 90
Query: 443 DSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQ- 619
D E + ++ L GH + + S G + V +GS D +KLWDIR+K + ++ Q
Sbjct: 91 DLEAAKILRTLMGHKANICSLDFHPYG-EFVASGSQDTNIKLWDIRRKGCVFRYRGHSQA 149
Query: 620 VLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNAM 799
V + F+ + S D+ +K+WDL K+ GH V +
Sbjct: 150 VRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSS 209
Query: 800 DNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRF-VYVWD 973
D T+R WD+ F C++ G V + ++PDG + +G D VY W+
Sbjct: 210 DRTIRFWDLEKFQVVS-CIEGEPGPVRS-------VLFNPDGCCLYSGCQDSLRVYGWE 260
Score = 92.8 bits (229), Expect = 8e-19
Identities = 61/237 (25%), Positives = 110/237 (46%), Gaps = 2/237 (0%)
Frame = +2
Query: 395 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 574
G +L + D V +W + L GHTS V S +L+ GS G++++WD
Sbjct: 33 GRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVR-LNTPEELIVAGSQSGSIRVWD 91
Query: 575 IRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 751
+ ++T + + ++ F+ + + SG D +IK+WD+R+ + RGH+ +V
Sbjct: 92 LEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVR 151
Query: 752 XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 931
A D+TV++WD+ + + F G H N++ + P+
Sbjct: 152 CLRFSPDGKWLASAADDHTVKLWDLTA----GKMMSEFPG--HTGPVNVVE--FHPNEYL 203
Query: 932 IAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDK-RLYTGE 1099
+A+GS+DR + WD +++ + G G + V F+PD + S D R+Y E
Sbjct: 204 LASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDSLRVYGWE 260
Score = 78.2 bits (191), Expect = 2e-14
Identities = 52/157 (33%), Positives = 74/157 (47%), Gaps = 3/157 (1%)
Frame = +2
Query: 218 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY--GDCDNYATLKGHSGAVMELHYNT 391
L GH+ + FHP G +AS D I LW++ G Y +GHS AV L ++
Sbjct: 101 LMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRY---RGHSQAVRCLRFSP 157
Query: 392 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 571
DG L SA+ D TV +WD G+ + GHT VN L+ +GS D T++ W
Sbjct: 158 DGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVN-VVEFHPNEYLLASGSSDRTIRFW 216
Query: 572 DIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDN 679
D+ K + + V +V FN + SG D+
Sbjct: 217 DLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDS 253
>ref|XP_532646.2| PREDICTED: similar to WD repeat domain 51B [Canis familiaris]
Length = 833
Score = 114 bits (285), Expect = 3e-25
Identities = 74/289 (25%), Positives = 134/289 (46%), Gaps = 1/289 (0%)
Frame = +2
Query: 224 GHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSM 403
GH+ + F P+G LA+A +D ++LWN + + GH V + ++ G++
Sbjct: 371 GHKAAITSVDFSPSGKQLATASWDTFLMLWNCKPQARAFRYV-GHKDVVTSVQFSPLGNL 429
Query: 404 LFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDI-R 580
L SAS D+TV +W + + K HT+ V S + G Q + T S+D ++K+W++ R
Sbjct: 430 LASASRDRTVRLWIPDKRGKSSEFKAHTAPVRSVDFSADG-QFLATASEDKSIKVWNMYR 488
Query: 581 KKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXX 760
++ +++T+ V F+ I+S D IK+WD +
Sbjct: 489 QRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDSVGFANFVD 548
Query: 761 XXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAA 940
D+TV++WD+R + ++ +Q VH+ N + S+ P G+ I
Sbjct: 549 FNPNGTCIASAGSDHTVKIWDIRV----NKLLQHYQ--VHSGGVNCV--SFHPSGNYIIT 600
Query: 941 GSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDKRL 1087
S+D + + D R++Y L GH G + V+F + S +D ++
Sbjct: 601 ASSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGELFSSGGADTQV 649
Score = 107 bits (266), Expect = 4e-23
Identities = 70/249 (28%), Positives = 117/249 (46%), Gaps = 3/249 (1%)
Frame = +2
Query: 350 KGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQ 529
KGH A+ + ++ G L +AS D + +W+ + R R GH V S + G
Sbjct: 370 KGHKAAITSVDFSPSGKQLATASWDTFLMLWNCKPQARAFRYVGHKDVVTSVQFSPLG-N 428
Query: 530 LVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQ 706
L+ + S D TV+LW K+ F+ +T V +V F+ + + D IKVW++ +
Sbjct: 429 LLASASRDRTVRLWIPDKRGKSSEFKAHTAPVRSVDFSADGQFLATASEDKSIKVWNMYR 488
Query: 707 NKLTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVH-- 880
+ Y++ H V + D T+++WD ++CV F +V
Sbjct: 489 QRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTT----NKQCVNNFSDSVGFA 544
Query: 881 NFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPII 1060
NF ++P+G+ IA+ +D V +WD ++L H+G +N V+FHP I
Sbjct: 545 NF------VDFNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQVHSGGVNCVSFHPSGNYI 598
Query: 1061 LSASSDKRL 1087
++ASSD L
Sbjct: 599 ITASSDGTL 607
Score = 105 bits (262), Expect = 1e-22
Identities = 73/260 (28%), Positives = 117/260 (45%), Gaps = 1/260 (0%)
Frame = +2
Query: 200 QAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMEL 379
QA GH+ V +F P G+ LASA DR + LW + + K H+ V +
Sbjct: 405 QARAFRYVGHKDVVTSVQFSPLGNLLASASRDRTVRLW-IPDKRGKSSEFKAHTAPVRSV 463
Query: 380 HYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGT 559
++ DG L +AS DK++ VW+ + L HT +V C +L+ + S+D T
Sbjct: 464 DFSADGQFLATASEDKSIKVWNMYRQRFLYSLYRHTHWVR-CAKFSPDGRLIVSCSEDKT 522
Query: 560 VKLWDIRKKAAIQTFQNTYQVLA-VTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGH 736
+K+WD K + F ++ V FN I S G D+ +K+WD+R NKL + H
Sbjct: 523 IKIWDTTNKQCVNNFSDSVGFANFVDFNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQVH 582
Query: 737 ADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWS 916
+ V + D T+++ D+ + R + QG+ + S+S
Sbjct: 583 SGGVNCVSFHPSGNYIITASSDGTLKILDLL----EGRLIYTLQGHT----GPVFTVSFS 634
Query: 917 PDGSKIAAGSADRFVYVWDT 976
G ++G AD V +W T
Sbjct: 635 KGGELFSSGGADTQVLLWRT 654
Database: RefSeqCP
Posted date: Aug 1, 2006 9:25 PM
Number of letters in database: 19,266,565
Number of sequences in database: 33,732
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,201,894
Number of Sequences: 33732
Number of extensions: 1439661
Number of successful extensions: 7573
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 3368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5252
length of database: 19,266,565
effective HSP length: 108
effective length of database: 15,623,509
effective search space used: 6452509217
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0112_F03
(1567 letters)
Database: RefSeqHP
39,411 sequences; 17,774,539 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004805.1| WD repeat domain 57 (U5 snRNP specific) [Homo s... 634 0.0
Alignment gi|NP_061942.2| WD repeat domain 5B [Homo sapiens] 160 3e-39
Alignment gi|NP_438172.1| WD repeat domain 5 [Homo sapiens] 157 3e-38
Alignment gi|NP_060058.1| WD repeat domain 5 [Homo sapiens] 157 3e-38
Alignment gi|NP_849143.1| hypothetical protein LOC164781 [Homo sapiens] 135 1e-31
Alignment gi|NP_056241.2| WD repeat domain 51A [Homo sapiens] 124 3e-28
Alignment gi|XP_947007.1| PREDICTED: similar to CG7704-PA isoform 1 [Homo... 122 8e-28
Alignment gi|NP_060444.2| APG16 autophagy 16-like isoform 2 [Homo sapiens] 121 2e-27
Alignment gi|NP_110430.4| APG16 autophagy 16-like isoform 1 [Homo sapiens] 121 2e-27
Alignment gi|XP_934992.1| PREDICTED: similar to CG7704-PA isoform 1 [Homo... 120 4e-27
>ref|NP_004805.1| WD repeat domain 57 (U5 snRNP specific) [Homo sapiens]
Length = 357
Score = 634 bits (1634), Expect = 0.0
Identities = 312/358 (87%), Positives = 315/358 (87%)
Frame = +2
Query: 32 MIEQQKRKGPELPLVPVKRQRHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCSSLQAPI 211
MI+QQKRKGPELPLVPVKRQRHE RCSSLQAPI
Sbjct: 1 MIDQQKRKGPELPLVPVKRQRHELLLGAGSGPGAGQQQATPGALLQAGPP-RCSSLQAPI 59
Query: 212 MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT 391
MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT
Sbjct: 60 MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT 119
Query: 392 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 571
DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPAR+ PQLVCTGSDDGTVKLW
Sbjct: 120 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARKSPQLVCTGSDDGTVKLW 179
Query: 572 DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 751
DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT
Sbjct: 180 DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 239
Query: 752 XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 931
NAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK
Sbjct: 240 GLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 299
Query: 932 IAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDKRLYTGEIQ 1105
IAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPII+SASSDKRLY GEIQ
Sbjct: 300 IAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIIISASSDKRLYMGEIQ 357
>ref|NP_061942.2| WD repeat domain 5B [Homo sapiens]
Length = 330
Score = 160 bits (405), Expect = 3e-39
Identities = 98/288 (34%), Positives = 153/288 (53%), Gaps = 3/288 (1%)
Frame = +2
Query: 218 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDG 397
L GH V KF PNG LAS+ DRLI++W Y D TL GH+ + ++ +++D
Sbjct: 37 LVGHTEAVSSVKFSPNGEWLASSSADRLIIIWGAY-DGKYEKTLYGHNLEISDVAWSSDS 95
Query: 398 SMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDI 577
S L SAS DKT+ +WD +G+ +K LKGH+++V C L+ +GS D TVK+W++
Sbjct: 96 SRLVSASDDKTLKLWDVRSGKCLKTLKGHSNYV-FCCNFNPPSNLIISGSFDETVKIWEV 154
Query: 578 RKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD-SVT 751
+ ++T ++ V AV FN + I+SG D ++WD + T+ + V+
Sbjct: 155 KTGKCLKTLSAHSDPVSAVHFNCSGSLIVSGSYDGLCRIWDAASGQCLKTLVDDDNPPVS 214
Query: 752 XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 931
+DNT+++WD + RC+K + G H EK + ++S G K
Sbjct: 215 FVKFSPNGKYILTATLDNTLKLWDY----SRGRCLKTYTG--HKNEKYCIFANFSVTGGK 268
Query: 932 -IAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSAS 1072
I +GS D VY+W+ ++ I+ KL GH + A HP E +I SA+
Sbjct: 269 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISAACHPTENLIASAA 316
Score = 104 bits (259), Expect = 2e-22
Identities = 59/208 (28%), Positives = 101/208 (48%), Gaps = 7/208 (3%)
Frame = +2
Query: 218 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYNTD 394
L GH V+CC F+P + + S FD + +W V G C TL HS V +H+N
Sbjct: 121 LKGHSNYVFCCNFNPPSNLIISGSFDETVKIWEVKTGKC--LKTLSAHSDPVSAVHFNCS 178
Query: 395 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 574
GS++ S S D +WD+ +G+ +K L + S + + T + D T+KLWD
Sbjct: 179 GSLIVSGSYDGLCRIWDAASGQCLKTLVDDDNPPVSFVKFSPNGKYILTATLDNTLKLWD 238
Query: 575 IRKKAAIQTF---QNTYQVLAVTFNDTSDQ-IISGGIDNDIKVWDLRQNKLTYTMRGHAD 742
+ ++T+ +N + F+ T + I+SG DN + +W+L+ ++ ++GH D
Sbjct: 239 YSRGRCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 298
Query: 743 SVTXXXXXXXXXXXXXNAMDN--TVRVW 820
V A++N T+++W
Sbjct: 299 VVISAACHPTENLIASAALENDKTIKLW 326
Score = 50.4 bits (119), Expect = 4e-06
Identities = 36/149 (24%), Positives = 68/149 (45%)
Frame = +2
Query: 713 LTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEK 892
L T+ GH ++V+ ++ D + +W A + K G HN E
Sbjct: 33 LKCTLVGHTEAVSSVKFSPNGEWLASSSADRLIIIWG----AYDGKYEKTLYG--HNLE- 85
Query: 893 NLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSAS 1072
+ +WS D S++ + S D+ + +WD S + L L GH+ + F+P +I+S S
Sbjct: 86 -ISDVAWSSDSSRLVSASDDKTLKLWDVRSGKCLKTLKGHSNYVFCCNFNPPSNLIISGS 144
Query: 1073 SDKRLYTGEIQ*RYGMEDSTRLLDPETSV 1159
D+ + E++ ++ + DP ++V
Sbjct: 145 FDETVKIWEVKTGKCLKTLSAHSDPVSAV 173
>ref|NP_438172.1| WD repeat domain 5 [Homo sapiens]
Length = 334
Score = 157 bits (396), Expect = 3e-38
Identities = 96/290 (33%), Positives = 153/290 (52%), Gaps = 5/290 (1%)
Frame = +2
Query: 218 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDG 397
L+GH V KF PNG LAS+ D+LI +W Y D T+ GH + ++ +++D
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLGISDVAWSSDS 99
Query: 398 SMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQ--LVCTGSDDGTVKLW 571
++L SAS DKT+ +WD +G+ +K LKGH+++V C PQ L+ +GS D +V++W
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC---NFNPQSNLIVSGSFDESVRIW 156
Query: 572 DIRKKAAIQTF-QNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD-S 745
D++ ++T ++ V AV FN I+S D ++WD + T+ +
Sbjct: 157 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 216
Query: 746 VTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDG 925
V+ +DNT+++WD K +C+K + G H EK + ++S G
Sbjct: 217 VSFVKFSPNGKYILAATLDNTLKLWDY----SKGKCLKTYTG--HKNEKYCIFANFSVTG 270
Query: 926 SK-IAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSAS 1072
K I +GS D VY+W+ ++ I+ KL GH + A HP E II SA+
Sbjct: 271 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 320
Score = 106 bits (265), Expect = 5e-23
Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 7/208 (3%)
Frame = +2
Query: 218 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYNTD 394
L GH V+CC F+P + + S FD + +W+V G C TL HS V +H+N D
Sbjct: 125 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRD 182
Query: 395 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 574
GS++ S+S D +WD+ +G+ +K L + S + + + D T+KLWD
Sbjct: 183 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242
Query: 575 IRKKAAIQTF---QNTYQVLAVTFNDTSDQ-IISGGIDNDIKVWDLRQNKLTYTMRGHAD 742
K ++T+ +N + F+ T + I+SG DN + +W+L+ ++ ++GH D
Sbjct: 243 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 302
Query: 743 SVTXXXXXXXXXXXXXNAMDN--TVRVW 820
V A++N T+++W
Sbjct: 303 VVISTACHPTENIIASAALENDKTIKLW 330
Score = 73.9 bits (180), Expect = 3e-13
Identities = 41/157 (26%), Positives = 74/157 (47%)
Frame = +2
Query: 608 NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXX 787
+T V +V F+ + + S D IK+W K T+ GH ++
Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 103
Query: 788 XNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYV 967
+ D T+++WDV +C+K +G+ + C+++P + I +GS D V +
Sbjct: 104 SASDDKTLKIWDVS----SGKCLKTLKGH----SNYVFCCNFNPQSNLIVSGSFDESVRI 155
Query: 968 WDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSD 1078
WD + + L LP H+ ++ V F+ D +I+S+S D
Sbjct: 156 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 192
Score = 50.1 bits (118), Expect = 5e-06
Identities = 26/131 (19%), Positives = 58/131 (44%)
Frame = +2
Query: 713 LTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEK 892
L +T+ GH +V+ ++ D +++W F+ + +
Sbjct: 37 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--------FEKTISGHKL 88
Query: 893 NLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSAS 1072
+ +WS D + + + S D+ + +WD +S + L L GH+ + F+P +I+S S
Sbjct: 89 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 148
Query: 1073 SDKRLYTGEIQ 1105
D+ + +++
Sbjct: 149 FDESVRIWDVK 159
>ref|NP_060058.1| WD repeat domain 5 [Homo sapiens]
Length = 334
Score = 157 bits (396), Expect = 3e-38
Identities = 96/290 (33%), Positives = 153/290 (52%), Gaps = 5/290 (1%)
Frame = +2
Query: 218 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDG 397
L+GH V KF PNG LAS+ D+LI +W Y D T+ GH + ++ +++D
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLGISDVAWSSDS 99
Query: 398 SMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQ--LVCTGSDDGTVKLW 571
++L SAS DKT+ +WD +G+ +K LKGH+++V C PQ L+ +GS D +V++W
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC---NFNPQSNLIVSGSFDESVRIW 156
Query: 572 DIRKKAAIQTF-QNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD-S 745
D++ ++T ++ V AV FN I+S D ++WD + T+ +
Sbjct: 157 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 216
Query: 746 VTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDG 925
V+ +DNT+++WD K +C+K + G H EK + ++S G
Sbjct: 217 VSFVKFSPNGKYILAATLDNTLKLWDY----SKGKCLKTYTG--HKNEKYCIFANFSVTG 270
Query: 926 SK-IAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSAS 1072
K I +GS D VY+W+ ++ I+ KL GH + A HP E II SA+
Sbjct: 271 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 320
Score = 106 bits (265), Expect = 5e-23
Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 7/208 (3%)
Frame = +2
Query: 218 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYNTD 394
L GH V+CC F+P + + S FD + +W+V G C TL HS V +H+N D
Sbjct: 125 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRD 182
Query: 395 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 574
GS++ S+S D +WD+ +G+ +K L + S + + + D T+KLWD
Sbjct: 183 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242
Query: 575 IRKKAAIQTF---QNTYQVLAVTFNDTSDQ-IISGGIDNDIKVWDLRQNKLTYTMRGHAD 742
K ++T+ +N + F+ T + I+SG DN + +W+L+ ++ ++GH D
Sbjct: 243 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 302
Query: 743 SVTXXXXXXXXXXXXXNAMDN--TVRVW 820
V A++N T+++W
Sbjct: 303 VVISTACHPTENIIASAALENDKTIKLW 330
Score = 73.9 bits (180), Expect = 3e-13
Identities = 41/157 (26%), Positives = 74/157 (47%)
Frame = +2
Query: 608 NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXX 787
+T V +V F+ + + S D IK+W K T+ GH ++
Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 103
Query: 788 XNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYV 967
+ D T+++WDV +C+K +G+ + C+++P + I +GS D V +
Sbjct: 104 SASDDKTLKIWDVS----SGKCLKTLKGH----SNYVFCCNFNPQSNLIVSGSFDESVRI 155
Query: 968 WDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSD 1078
WD + + L LP H+ ++ V F+ D +I+S+S D
Sbjct: 156 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 192
Score = 50.1 bits (118), Expect = 5e-06
Identities = 26/131 (19%), Positives = 58/131 (44%)
Frame = +2
Query: 713 LTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEK 892
L +T+ GH +V+ ++ D +++W F+ + +
Sbjct: 37 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--------FEKTISGHKL 88
Query: 893 NLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSAS 1072
+ +WS D + + + S D+ + +WD +S + L L GH+ + F+P +I+S S
Sbjct: 89 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 148
Query: 1073 SDKRLYTGEIQ 1105
D+ + +++
Sbjct: 149 FDESVRIWDVK 159
>ref|NP_849143.1| hypothetical protein LOC164781 [Homo sapiens]
Length = 415
Score = 135 bits (340), Expect = 1e-31
Identities = 80/275 (29%), Positives = 135/275 (49%), Gaps = 2/275 (0%)
Frame = +2
Query: 263 NGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTD-GSMLFSASTDKTVAV 439
+GS + +DR LW+ + TL+GH V + +N G + + S DKT +
Sbjct: 103 SGSCFITGSYDRTCKLWDTASG-EELNTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKL 161
Query: 440 WDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTY 616
W ETG+ +GHT+ + C LV TGS D T KLWDI+ + T + ++
Sbjct: 162 WSVETGKCYHTFRGHTAEI-VCLSFNPQSTLVATGSMDTTAKLWDIQNGEEVYTLRGHSA 220
Query: 617 QVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNA 796
++++++FN + D+II+G D+ + VWD + + GH ++ +
Sbjct: 221 EIISLSFNTSGDRIITGSFDHTVVVWDADTGRKVNILIGHCAEISSASFNWDCSLILTGS 280
Query: 797 MDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDT 976
MD T ++WD A +CV G+ + +L + G IA SAD ++
Sbjct: 281 MDKTCKLWD----ATNGKCVATLTGH----DDEILDSCFDYTGKLIATASADGTARIFSA 332
Query: 977 TSRRILYKLPGHAGSINEVAFHPDEPIILSASSDK 1081
+R+ + KL GH G I++++F+P +L+ SSDK
Sbjct: 333 ATRKCIAKLEGHEGEISKISFNPQGNHLLTGSSDK 367
Score = 134 bits (338), Expect = 2e-31
Identities = 81/290 (27%), Positives = 139/290 (47%), Gaps = 3/290 (1%)
Frame = +2
Query: 218 LSGHEGEVYCCKFH-PNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYNT 391
L GH VY F+ P G +A+ FD+ LW+V G C Y T +GH+ ++ L +N
Sbjct: 130 LEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKC--YHTFRGHTAEIVCLSFNP 187
Query: 392 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 571
+++ + S D T +WD + GE V L+GH++ + S G +++ TGS D TV +W
Sbjct: 188 QSTLVATGSMDTTAKLWDIQNGEEVYTLRGHSAEIISLSFNTSGDRII-TGSFDHTVVVW 246
Query: 572 DIRKKAAIQ-TFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSV 748
D + + ++ + +FN I++G +D K+WD K T+ GH D +
Sbjct: 247 DADTGRKVNILIGHCAEISSASFNWDCSLILTGSMDKTCKLWDATNGKCVATLTGHDDEI 306
Query: 749 TXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGS 928
+ D T R++ A +C+ +G+ E + + S++P G+
Sbjct: 307 LDSCFDYTGKLIATASADGTARIFS----AATRKCIAKLEGH----EGEISKISFNPQGN 358
Query: 929 KIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSD 1078
+ GS+D+ +WD + + L L GH I AF+ I+++ S D
Sbjct: 359 HLLTGSSDKTARIWDAQTGQCLQVLEGHTDEIFSCAFNYKGNIVITGSKD 408
Score = 119 bits (297), Expect = 9e-27
Identities = 67/250 (26%), Positives = 115/250 (46%), Gaps = 1/250 (0%)
Frame = +2
Query: 224 GHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSM 403
GH E+ C F+P + +A+ D LW++ + Y TL+GHS ++ L +NT G
Sbjct: 175 GHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQNGEEVY-TLRGHSAEIISLSFNTSGDR 233
Query: 404 LFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRK 583
+ + S D TV VWD++TG +V L GH + ++S L+ TGS D T KLWD
Sbjct: 234 IITGSFDHTVVVWDADTGRKVNILIGHCAEISSA-SFNWDCSLILTGSMDKTCKLWDATN 292
Query: 584 KAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXX 760
+ T + ++L F+ T I + D +++ K + GH ++
Sbjct: 293 GKCVATLTGHDDEILDSCFDYTGKLIATASADGTARIFSAATRKCIAKLEGHEGEISKIS 352
Query: 761 XXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAA 940
+ D T R+WD A +C+++ +G+ + C+++ G+ +
Sbjct: 353 FNPQGNHLLTGSSDKTARIWD----AQTGQCLQVLEGHT----DEIFSCAFNYKGNIVIT 404
Query: 941 GSADRFVYVW 970
GS D +W
Sbjct: 405 GSKDNTCRIW 414
Score = 96.7 bits (239), Expect = 5e-20
Identities = 51/209 (24%), Positives = 95/209 (45%), Gaps = 5/209 (2%)
Frame = +2
Query: 209 IMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCD---NYATLKGHSGAVMEL 379
+ L GH E+ F+ +G + + FD +++W D D L GH +
Sbjct: 212 VYTLRGHSAEIISLSFNTSGDRIITGSFDHTVVVW----DADTGRKVNILIGHCAEISSA 267
Query: 380 HYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGH-TSFVNSCYPARRGPQLVCTGSDDG 556
+N D S++ + S DKT +WD+ G+ V L GH ++SC+ +L+ T S DG
Sbjct: 268 SFNWDCSLILTGSMDKTCKLWDATNGKCVATLTGHDDEILDSCFDYT--GKLIATASADG 325
Query: 557 TVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRG 733
T +++ + I + + ++ ++FN + +++G D ++WD + + + G
Sbjct: 326 TARIFSAATRKCIAKLEGHEGEISKISFNPQGNHLLTGSSDKTARIWDAQTGQCLQVLEG 385
Query: 734 HADSVTXXXXXXXXXXXXXNAMDNTVRVW 820
H D + + DNT R+W
Sbjct: 386 HTDEIFSCAFNYKGNIVITGSKDNTCRIW 414
>ref|NP_056241.2| WD repeat domain 51A [Homo sapiens]
Length = 407
Score = 124 bits (310), Expect = 3e-28
Identities = 87/289 (30%), Positives = 128/289 (44%), Gaps = 1/289 (0%)
Frame = +2
Query: 224 GHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSM 403
GH V C F N LAS D +++W++ Y GH AV ++++ G +
Sbjct: 17 GHRDAVTCVDFSINTKQLASGSMDSCLMVWHMKPQSRAYR-FTGHKDAVTCVNFSPSGHL 75
Query: 404 LFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDI-R 580
L S S DKTV +W + HT+ V S + G V T SDD TVK+W R
Sbjct: 76 LASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFV-TASDDKTVKVWATHR 134
Query: 581 KKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXX 760
+K Q+ V F+ I+S D +K+WD + ++ H VT
Sbjct: 135 QKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKSSRECVHSYCEHGGFVTYVD 194
Query: 761 XXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAA 940
MDNTV+VWDVR + R ++ +Q +H+ N L S+ P G+ +
Sbjct: 195 FHPSGTCIAAAGMDNTVKVWDVRTY----RLLQHYQ--LHSAAVNGL--SFHPSGNYLIT 246
Query: 941 GSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDKRL 1087
S+D + + D R+LY L GH G VAF S SD+++
Sbjct: 247 ASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQV 295
Score = 106 bits (265), Expect = 5e-23
Identities = 70/253 (27%), Positives = 121/253 (47%), Gaps = 3/253 (1%)
Frame = +2
Query: 221 SGHEGEVYCCKFHPNGSTLASAGFDRLILLW--NVYGDCDNYATLKGHSGAVMELHYNTD 394
+GH+ V C F P+G LAS D+ + +W NV G+ + H+ V +H+ +D
Sbjct: 58 TGHKDAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKGES---TVFRAHTATVRSVHFCSD 114
Query: 395 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 574
G +AS DKTV VW + + + L H ++V C +L+ + SDD TVKLWD
Sbjct: 115 GQSFVTASDDKTVKVWATHRQKFLFSLSQHINWVR-CAKFSPDGRLIVSASDDKTVKLWD 173
Query: 575 IRKKAAIQTF-QNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 751
+ + ++ ++ V V F+ + I + G+DN +KVWD+R +L + H+ +V
Sbjct: 174 KSSRECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTYRLLQHYQLHSAAVN 233
Query: 752 XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 931
+ D+T+++ D+ + R + +H + ++S G
Sbjct: 234 GLSFHPSGNYLITASSDSTLKILDLM----EGRLLY----TLHGHQGPATTVAFSRTGEY 285
Query: 932 IAAGSADRFVYVW 970
A+G +D V VW
Sbjct: 286 FASGGSDEQVMVW 298
Score = 97.4 bits (241), Expect = 3e-20
Identities = 67/250 (26%), Positives = 110/250 (44%), Gaps = 4/250 (1%)
Frame = +2
Query: 350 KGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQ 529
KGH AV + ++ + L S S D + VW + R R GH V +C
Sbjct: 16 KGHRDAVTCVDFSINTKQLASGSMDSCLMVWHMKPQSRAYRFTGHKDAV-TCVNFSPSGH 74
Query: 530 LVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQ 706
L+ +GS D TV++W K F+ +T V +V F ++ D +KVW +
Sbjct: 75 LLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVWATHR 134
Query: 707 NKLTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNF 886
K +++ H + V + D TV++WD K + VH++
Sbjct: 135 QKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWD-----------KSSRECVHSY 183
Query: 887 EKN---LLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPI 1057
++ + + P G+ IAA D V VWD + R+L H+ ++N ++FHP
Sbjct: 184 CEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTYRLLQHYQLHSAAVNGLSFHPSGNY 243
Query: 1058 ILSASSDKRL 1087
+++ASSD L
Sbjct: 244 LITASSDSTL 253
Score = 74.7 bits (182), Expect = 2e-13
Identities = 49/166 (29%), Positives = 77/166 (46%), Gaps = 7/166 (4%)
Frame = +2
Query: 218 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWN------VYGDCDNYATLKGHSGAVMEL 379
LS H V C KF P+G + SA D+ + LW+ V+ C+ H G V +
Sbjct: 141 LSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKSSRECVHSYCE-------HGGFVTYV 193
Query: 380 HYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGT 559
++ G+ + +A D TV VWD T ++ + H++ VN G L+ T S D T
Sbjct: 194 DFHPSGTCIAAAGMDNTVKVWDVRTYRLLQHYQLHSAAVNGLSFHPSGNYLI-TASSDST 252
Query: 560 VKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVW 694
+K+ D+ + + T + V F+ T + SGG D + VW
Sbjct: 253 LKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVMVW 298
Score = 72.8 bits (177), Expect = 8e-13
Identities = 50/196 (25%), Positives = 82/196 (41%), Gaps = 34/196 (17%)
Frame = +2
Query: 620 VLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNAM 799
V V F+ + Q+ SG +D+ + VW ++ Y GH D+VT +
Sbjct: 22 VTCVDFSINTKQLASGSMDSCLMVWHMKPQSRAYRFTGHKDAVTCVNFSPSGHLLASGSR 81
Query: 800 DNTVRVW-------------------------DVRPF--APKERCVKIFQGNVHNF---- 886
D TVR+W D + F A ++ VK++ + F
Sbjct: 82 DKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVWATHRQKFLFSL 141
Query: 887 --EKNLLRCS-WSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPI 1057
N +RC+ +SPDG I + S D+ V +WD +SR ++ H G + V FHP
Sbjct: 142 SQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKSSRECVHSYCEHGGFVTYVDFHPSGTC 201
Query: 1058 ILSASSDKRLYTGEIQ 1105
I +A D + +++
Sbjct: 202 IAAAGMDNTVKVWDVR 217
>ref|XP_947007.1| PREDICTED: similar to CG7704-PA isoform 1 [Homo sapiens]
Length = 315
Score = 122 bits (306), Expect = 8e-28
Identities = 71/241 (29%), Positives = 119/241 (49%), Gaps = 3/241 (1%)
Frame = +2
Query: 356 HSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLV 535
H G V ++ DG ML + S D V W++ +G+ + RL GHT V C + G L
Sbjct: 20 HGGEVNSSAFSPDGQMLLTGSEDGCVYGWETRSGQLLWRLGGHTGPVKFCRFSPDG-HLF 78
Query: 536 CTGSDDGTVKLWDIRKKAAIQTFQNTYQ-VLAVTFNDTSDQIISGGIDNDIKVWDLRQNK 712
+ S D TV+LWD+ + ++ + + V V+F+ S Q+ SGG D + +WD++ +
Sbjct: 79 ASASCDCTVRLWDVARAKCLRVLKGHQRSVETVSFSPDSRQLASGGWDKRVMLWDVQSGQ 138
Query: 713 LTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAP--KERCVKIFQGNVHNF 886
+ + GH DS+ + D+TVR+WD+R P + ++ GN+
Sbjct: 139 MLRLLVGHRDSIQSSDFSPTVNCLATGSWDSTVRIWDLRMVTPAVSHQALEGHSGNI--- 195
Query: 887 EKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILS 1066
C +A+GS D+ +++W T+ +L +L GH + +AF PDE + S
Sbjct: 196 -----SCLCYSASGLLASGSWDKTIHIWKPTTSSLLIQLKGHVTWVKSIAFSPDELWLAS 250
Query: 1067 A 1069
A
Sbjct: 251 A 251
Score = 102 bits (254), Expect = 9e-22
Identities = 69/251 (27%), Positives = 111/251 (44%), Gaps = 5/251 (1%)
Frame = +2
Query: 218 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDG 397
L GH G V C+F P+G ASA D + LW+V LKGH +V + ++ D
Sbjct: 59 LGGHTGPVKFCRFSPDGHLFASASCDCTVRLWDV-ARAKCLRVLKGHQRSVETVSFSPDS 117
Query: 398 SMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVC--TGSDDGTVKLW 571
L S DK V +WD ++G+ ++ L GH + S + P + C TGS D TV++W
Sbjct: 118 RQLASGGWDKRVMLWDVQSGQMLRLLVGHRDSIQS---SDFSPTVNCLATGSWDSTVRIW 174
Query: 572 DIR---KKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD 742
D+R + Q + ++ S + SG D I +W + L ++GH
Sbjct: 175 DLRMVTPAVSHQALEGHSGNISCLCYSASGLLASGSWDKTIHIWKPTTSSLLIQLKGHVT 234
Query: 743 SVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPD 922
V V+VWD +C++ + V + C+++PD
Sbjct: 235 WVKSIAFSPDELWLASAGYSRMVKVWDCN----TGKCLETLKQGVLDVAHT---CAFTPD 287
Query: 923 GSKIAAGSADR 955
G + +G+AD+
Sbjct: 288 GKILVSGAADQ 298
Score = 87.8 bits (216), Expect = 2e-17
Identities = 75/291 (25%), Positives = 131/291 (45%), Gaps = 6/291 (2%)
Frame = +2
Query: 227 HEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSML 406
H GEV F P+G L + D + W L GH+G V ++ DG +
Sbjct: 20 HGGEVNSSAFSPDGQMLLTGSEDGCVYGWETRSG-QLLWRLGGHTGPVKFCRFSPDGHLF 78
Query: 407 FSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKK 586
SAS D TV +WD + ++ LKGH V + + QL +G D V LWD++
Sbjct: 79 ASASCDCTVRLWDVARAKCLRVLKGHQRSVETVSFSPDSRQL-ASGGWDKRVMLWDVQSG 137
Query: 587 AAIQTF-QNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYT---MRGHADSVTX 754
++ + + + F+ T + + +G D+ +++WDLR + + GH+ +++
Sbjct: 138 QMLRLLVGHRDSIQSSDFSPTVNCLATGSWDSTVRIWDLRMVTPAVSHQALEGHSGNIS- 196
Query: 755 XXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKI-FQGNVHNFEKNLLRCSWSPDGSK 931
+ D T+ +W P + I +G+V + K++ ++SPD
Sbjct: 197 CLCYSASGLLASGSWDKTIHIW-----KPTTSSLLIQLKGHV-TWVKSI---AFSPDELW 247
Query: 932 IAAGSADRFVYVWDTTSRRILYKL-PGHAGSINEVAFHPDEPIILSASSDK 1081
+A+ R V VWD + + L L G + AF PD I++S ++D+
Sbjct: 248 LASAGYSRMVKVWDCNTGKCLETLKQGVLDVAHTCAFTPDGKILVSGAADQ 298
Score = 70.1 bits (170), Expect = 5e-12
Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 5/179 (2%)
Frame = +2
Query: 209 IMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYN 388
+ +L GH+ V F P+ LAS G+D+ ++LW+V L GH ++ ++
Sbjct: 98 LRVLKGHQRSVETVSFSPDSRQLASGGWDKRVMLWDVQSG-QMLRLLVGHRDSIQSSDFS 156
Query: 389 TDGSMLFSASTDKTVAVWDSE---TGERVKRLKGHTSFVNS-CYPARRGPQLVCTGSDDG 556
+ L + S D TV +WD + L+GH+ ++ CY A L+ +GS D
Sbjct: 157 PTVNCLATGSWDSTVRIWDLRMVTPAVSHQALEGHSGNISCLCYSA---SGLLASGSWDK 213
Query: 557 TVKLW-DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMR 730
T+ +W IQ + V ++ F+ + S G +KVWD K T++
Sbjct: 214 TIHIWKPTTSSLLIQLKGHVTWVKSIAFSPDELWLASAGYSRMVKVWDCNTGKCLETLK 272
Score = 69.7 bits (169), Expect = 6e-12
Identities = 41/158 (25%), Positives = 76/158 (48%)
Frame = +2
Query: 605 QNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXX 784
Q+ +V + F+ +++G D + W+ R +L + + GH V
Sbjct: 19 QHGGEVNSSAFSPDGQMLLTGSEDGCVYGWETRSGQLLWRLGGHTGPVKFCRFSPDGHLF 78
Query: 785 XXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVY 964
+ D TVR+WDV + +C+++ +G+ ++++ S+SPD ++A+G D+ V
Sbjct: 79 ASASCDCTVRLWDV----ARAKCLRVLKGH----QRSVETVSFSPDSRQLASGGWDKRVM 130
Query: 965 VWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSD 1078
+WD S ++L L GH SI F P + + S D
Sbjct: 131 LWDVQSGQMLRLLVGHRDSIQSSDFSPTVNCLATGSWD 168
Score = 53.1 bits (126), Expect = 6e-07
Identities = 31/77 (40%), Positives = 41/77 (53%)
Frame = +2
Query: 848 RCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSIN 1027
R VK F H E N ++SPDG + GS D VY W+T S ++L++L GH G +
Sbjct: 12 RRVKFF--GQHGGEVN--SSAFSPDGQMLLTGSEDGCVYGWETRSGQLLWRLGGHTGPVK 67
Query: 1028 EVAFHPDEPIILSASSD 1078
F PD + SAS D
Sbjct: 68 FCRFSPDGHLFASASCD 84
Score = 51.2 bits (121), Expect = 2e-06
Identities = 25/67 (37%), Positives = 35/67 (52%)
Frame = +2
Query: 905 CSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDKR 1084
C +SPDG A+ S D V +WD + L L GH S+ V+F PD + S DKR
Sbjct: 69 CRFSPDGHLFASASCDCTVRLWDVARAKCLRVLKGHQRSVETVSFSPDSRQLASGGWDKR 128
Query: 1085 LYTGEIQ 1105
+ ++Q
Sbjct: 129 VMLWDVQ 135
>ref|NP_060444.2| APG16 autophagy 16-like isoform 2 [Homo sapiens]
Length = 504
Score = 121 bits (303), Expect = 2e-27
Identities = 84/291 (28%), Positives = 136/291 (46%), Gaps = 5/291 (1%)
Frame = +2
Query: 209 IMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD-CDNYATLKGHSGAVMELHY 385
+ + H+GEV +F P LA+ G DR + LW V+G+ C+ +L G + + + +
Sbjct: 212 LCVFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGEKCEFKGSLSGSNAGITSIEF 271
Query: 386 NTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVK 565
++ GS L +AS D +W + L GH+ V S ++V +GS D T+K
Sbjct: 272 DSAGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNARIV-SGSHDRTLK 330
Query: 566 LWDIRKKAAIQTFQNTYQVLAVTFND---TSDQIISGGIDNDIKVWDLRQNKLTYTMRGH 736
LWD+R K I+T + ND T ++SG D I+ WD+R + M
Sbjct: 331 LWDLRSKVCIKTV-----FAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESIVREME-L 384
Query: 737 ADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWS 916
+T + D+ ++V D+R A K+ F + R +S
Sbjct: 385 LGKITALDLNPERTELLSCSRDDLLKVIDLRTNAIKQ----TFSAPGFKCGSDWTRVVFS 440
Query: 917 PDGSKIAAGSADRFVYVWDTTSRRILYKL-PGHAGSINEVAFHPDEPIILS 1066
PDGS +AAGSA+ +Y+W + ++ L H+ SIN VA+ P ++S
Sbjct: 441 PDGSYVAAGSAEGSLYIWSVLTGKVEKVLSKQHSSSINAVAWSPSGSHVVS 491
>ref|NP_110430.4| APG16 autophagy 16-like isoform 1 [Homo sapiens]
Length = 523
Score = 121 bits (303), Expect = 2e-27
Identities = 84/291 (28%), Positives = 136/291 (46%), Gaps = 5/291 (1%)
Frame = +2
Query: 209 IMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD-CDNYATLKGHSGAVMELHY 385
+ + H+GEV +F P LA+ G DR + LW V+G+ C+ +L G + + + +
Sbjct: 231 LCVFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGEKCEFKGSLSGSNAGITSIEF 290
Query: 386 NTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVK 565
++ GS L +AS D +W + L GH+ V S ++V +GS D T+K
Sbjct: 291 DSAGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNARIV-SGSHDRTLK 349
Query: 566 LWDIRKKAAIQTFQNTYQVLAVTFND---TSDQIISGGIDNDIKVWDLRQNKLTYTMRGH 736
LWD+R K I+T + ND T ++SG D I+ WD+R + M
Sbjct: 350 LWDLRSKVCIKTV-----FAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESIVREME-L 403
Query: 737 ADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWS 916
+T + D+ ++V D+R A K+ F + R +S
Sbjct: 404 LGKITALDLNPERTELLSCSRDDLLKVIDLRTNAIKQ----TFSAPGFKCGSDWTRVVFS 459
Query: 917 PDGSKIAAGSADRFVYVWDTTSRRILYKL-PGHAGSINEVAFHPDEPIILS 1066
PDGS +AAGSA+ +Y+W + ++ L H+ SIN VA+ P ++S
Sbjct: 460 PDGSYVAAGSAEGSLYIWSVLTGKVEKVLSKQHSSSINAVAWSPSGSHVVS 510
>ref|XP_934992.1| PREDICTED: similar to CG7704-PA isoform 1 [Homo sapiens]
Length = 315
Score = 120 bits (300), Expect = 4e-27
Identities = 70/239 (29%), Positives = 118/239 (49%), Gaps = 1/239 (0%)
Frame = +2
Query: 356 HSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLV 535
H G V ++ DG ML + S D V W++ +G+ + RL GHT V C + G L
Sbjct: 20 HGGEVNSSAFSPDGQMLLTGSEDGCVYGWETRSGQLLWRLGGHTGPVKFCRFSPDG-HLF 78
Query: 536 CTGSDDGTVKLWDIRKKAAIQTFQNTYQ-VLAVTFNDTSDQIISGGIDNDIKVWDLRQNK 712
+ S D TV+LWD+ + ++ + + V V+F+ S Q+ SGG D + +WD++ +
Sbjct: 79 ASASCDCTVRLWDVARAKCLRVLKGHQRSVETVSFSPDSRQLASGGWDKRVMLWDVQSGQ 138
Query: 713 LTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEK 892
+ + GH DS+ + D+TV +WD+R P + +
Sbjct: 139 MLRLLVGHRDSIQSSDFSPTVNCLATGSWDSTVHIWDLRMVTP-----AVSHQALEGHSA 193
Query: 893 NLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSA 1069
N+ +S G +A+GS D+ +++W T+ +L +L GH + +AF PDE + SA
Sbjct: 194 NISCLCYSASG-LLASGSWDKTIHIWKPTTSSLLIQLKGHVTWVKSIAFSPDELWLASA 251
Score = 101 bits (252), Expect = 2e-21
Identities = 69/251 (27%), Positives = 110/251 (43%), Gaps = 5/251 (1%)
Frame = +2
Query: 218 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDG 397
L GH G V C+F P+G ASA D + LW+V LKGH +V + ++ D
Sbjct: 59 LGGHTGPVKFCRFSPDGHLFASASCDCTVRLWDV-ARAKCLRVLKGHQRSVETVSFSPDS 117
Query: 398 SMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVC--TGSDDGTVKLW 571
L S DK V +WD ++G+ ++ L GH + S + P + C TGS D TV +W
Sbjct: 118 RQLASGGWDKRVMLWDVQSGQMLRLLVGHRDSIQS---SDFSPTVNCLATGSWDSTVHIW 174
Query: 572 DIR---KKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD 742
D+R + Q + ++ S + SG D I +W + L ++GH
Sbjct: 175 DLRMVTPAVSHQALEGHSANISCLCYSASGLLASGSWDKTIHIWKPTTSSLLIQLKGHVT 234
Query: 743 SVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPD 922
V V+VWD +C++ + V + C+++PD
Sbjct: 235 WVKSIAFSPDELWLASAGYSRMVKVWDCN----TGKCLETLKQGVLDVAHT---CAFTPD 287
Query: 923 GSKIAAGSADR 955
G + +G+AD+
Sbjct: 288 GKILVSGAADQ 298
Score = 86.3 bits (212), Expect = 7e-17
Identities = 75/291 (25%), Positives = 130/291 (44%), Gaps = 6/291 (2%)
Frame = +2
Query: 227 HEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSML 406
H GEV F P+G L + D + W L GH+G V ++ DG +
Sbjct: 20 HGGEVNSSAFSPDGQMLLTGSEDGCVYGWETRSG-QLLWRLGGHTGPVKFCRFSPDGHLF 78
Query: 407 FSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKK 586
SAS D TV +WD + ++ LKGH V + + QL +G D V LWD++
Sbjct: 79 ASASCDCTVRLWDVARAKCLRVLKGHQRSVETVSFSPDSRQL-ASGGWDKRVMLWDVQSG 137
Query: 587 AAIQTF-QNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYT---MRGHADSVTX 754
++ + + + F+ T + + +G D+ + +WDLR + + GH+ +++
Sbjct: 138 QMLRLLVGHRDSIQSSDFSPTVNCLATGSWDSTVHIWDLRMVTPAVSHQALEGHSANIS- 196
Query: 755 XXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKI-FQGNVHNFEKNLLRCSWSPDGSK 931
+ D T+ +W P + I +G+V + K++ ++SPD
Sbjct: 197 CLCYSASGLLASGSWDKTIHIW-----KPTTSSLLIQLKGHV-TWVKSI---AFSPDELW 247
Query: 932 IAAGSADRFVYVWDTTSRRILYKL-PGHAGSINEVAFHPDEPIILSASSDK 1081
+A+ R V VWD + + L L G + AF PD I++S ++D+
Sbjct: 248 LASAGYSRMVKVWDCNTGKCLETLKQGVLDVAHTCAFTPDGKILVSGAADQ 298
Score = 71.2 bits (173), Expect = 2e-12
Identities = 42/167 (25%), Positives = 79/167 (47%)
Frame = +2
Query: 605 QNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXX 784
Q+ +V + F+ +++G D + W+ R +L + + GH V
Sbjct: 19 QHGGEVNSSAFSPDGQMLLTGSEDGCVYGWETRSGQLLWRLGGHTGPVKFCRFSPDGHLF 78
Query: 785 XXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVY 964
+ D TVR+WDV + +C+++ +G+ + E S+SPD ++A+G D+ V
Sbjct: 79 ASASCDCTVRLWDVA----RAKCLRVLKGHQRSVET----VSFSPDSRQLASGGWDKRVM 130
Query: 965 VWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDKRLYTGEIQ 1105
+WD S ++L L GH SI F P + + S D ++ +++
Sbjct: 131 LWDVQSGQMLRLLVGHRDSIQSSDFSPTVNCLATGSWDSTVHIWDLR 177
Score = 70.1 bits (170), Expect = 5e-12
Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 5/179 (2%)
Frame = +2
Query: 209 IMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYN 388
+ +L GH+ V F P+ LAS G+D+ ++LW+V L GH ++ ++
Sbjct: 98 LRVLKGHQRSVETVSFSPDSRQLASGGWDKRVMLWDVQSG-QMLRLLVGHRDSIQSSDFS 156
Query: 389 TDGSMLFSASTDKTVAVWDSE---TGERVKRLKGHTSFVNS-CYPARRGPQLVCTGSDDG 556
+ L + S D TV +WD + L+GH++ ++ CY A L+ +GS D
Sbjct: 157 PTVNCLATGSWDSTVHIWDLRMVTPAVSHQALEGHSANISCLCYSA---SGLLASGSWDK 213
Query: 557 TVKLW-DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMR 730
T+ +W IQ + V ++ F+ + S G +KVWD K T++
Sbjct: 214 TIHIWKPTTSSLLIQLKGHVTWVKSIAFSPDELWLASAGYSRMVKVWDCNTGKCLETLK 272
Score = 53.1 bits (126), Expect = 6e-07
Identities = 31/77 (40%), Positives = 41/77 (53%)
Frame = +2
Query: 848 RCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSIN 1027
R VK F H E N ++SPDG + GS D VY W+T S ++L++L GH G +
Sbjct: 12 RRVKFF--GQHGGEVN--SSAFSPDGQMLLTGSEDGCVYGWETRSGQLLWRLGGHTGPVK 67
Query: 1028 EVAFHPDEPIILSASSD 1078
F PD + SAS D
Sbjct: 68 FCRFSPDGHLFASASCD 84
Database: RefSeqHP
Posted date: Aug 2, 2006 12:57 AM
Number of letters in database: 17,774,539
Number of sequences in database: 39,411
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,818,614
Number of Sequences: 39411
Number of extensions: 1410124
Number of successful extensions: 6384
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 3228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4686
length of database: 17,774,539
effective HSP length: 107
effective length of database: 13,557,562
effective search space used: 5612830668
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqSP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0112_F03
(1567 letters)
Database: RefSeqSP
1040 sequences; 434,620 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999415.1| platelet-activating factor acetylhydrolase Ib-a... 109 2e-25
Alignment gi|NP_999497.1| G-beta like protein [Sus scrofa] 90 1e-19
Alignment gi|NP_001012296.1| fizzy/cell division cycle 20 related 1 [Sus ... 59 3e-10
>ref|NP_999415.1| platelet-activating factor acetylhydrolase Ib-alpha subunit [Sus
scrofa]
Length = 410
Score = 109 bits (273), Expect = 2e-25
Identities = 81/274 (29%), Positives = 124/274 (45%), Gaps = 22/274 (8%)
Frame = +2
Query: 332 DNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYP 511
+ YA L GH V + ++ S++ SAS D T+ VWD ETG+ + LKGHT V
Sbjct: 100 EKYA-LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF 158
Query: 512 ARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIK 688
G +L+ + S D T+KLWD + I+T + + V +V D I+S D IK
Sbjct: 159 DHSG-KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSAARDKTIK 217
Query: 689 VWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQ 868
+W+++ T GH + V + D TVRVW V A KE ++ +
Sbjct: 218 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV---ATKECKAELRE 274
Query: 869 GNVHNFEKNLLRC-SWSPDGSK--------------------IAAGSADRFVYVWDTTSR 985
++++ C SW+P+ S + +GS D+ + +WD ++
Sbjct: 275 ------HEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG 328
Query: 986 RILYKLPGHAGSINEVAFHPDEPIILSASSDKRL 1087
L L GH + V FH ILS + DK L
Sbjct: 329 MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTL 362
Score = 102 bits (254), Expect = 2e-23
Identities = 78/315 (24%), Positives = 136/315 (43%), Gaps = 21/315 (6%)
Frame = +2
Query: 218 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDG 397
LSGH V FHP S + SA D I +W+ Y D TLKGH+ +V ++ ++ G
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWD-YETGDFERTLKGHTDSVQDISFDHSG 162
Query: 398 SMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDI 577
+L S S D T+ +WD + E ++ + GH V+S G +V + + D T+K+W++
Sbjct: 163 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIV-SAARDKTIKMWEV 221
Query: 578 RKKAAIQTFQNTYQ-VLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTX 754
+ ++TF + V V N I S D ++VW + + +R H V
Sbjct: 222 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVEC 281
Query: 755 XXXXXXXXXXXXN--------------------AMDNTVRVWDVRPFAPKERCVKIFQGN 874
+ + D T+++WDV C+ G+
Sbjct: 282 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST----GMCLMTLVGH 337
Query: 875 VHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEP 1054
N+ + +L + G I + + D+ + VWD ++R + L H + + FH P
Sbjct: 338 -DNWVRGVL---FHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP 393
Query: 1055 IILSASSDKRLYTGE 1099
+++ S D+ + E
Sbjct: 394 YVVTGSVDQTVKVWE 408
Score = 88.6 bits (218), Expect = 4e-19
Identities = 66/229 (28%), Positives = 97/229 (42%), Gaps = 22/229 (9%)
Frame = +2
Query: 209 IMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHY 385
I + GH+ V PNG + SA D+ I +W V G C T GH V +
Sbjct: 185 IRTMHGHDHNVSSVAIMPNGDHIVSAARDKTIKMWEVQTGYC--VKTFTGHREWVRMVRP 242
Query: 386 NTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFV-------NSCYPA---------- 514
N DG+++ S S D+TV VW T E L+ H V S Y +
Sbjct: 243 NQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETK 302
Query: 515 ---RRGPQLVCTGSDDGTVKLWDIRKKAAIQTF-QNTYQVLAVTFNDTSDQIISGGIDND 682
+ GP L+ +GS D T+K+WD+ + T + V V F+ I+S D
Sbjct: 303 KSGKPGPFLL-SGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT 361
Query: 683 IKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVR 829
++VWD + + T+ H VT ++D TV+VW+ R
Sbjct: 362 LRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 55.8 bits (133), Expect = 3e-09
Identities = 47/188 (25%), Positives = 78/188 (41%), Gaps = 3/188 (1%)
Frame = +2
Query: 578 RKKAAIQTFQNTYQVLAVTFNDTSDQIISGGI---DNDIKVWDLRQNKLTYTMRGHADSV 748
+K ++ Q L N+ ++ SGG D K W R + Y + GH V
Sbjct: 53 KKWTSVIRLQKKVMELESKLNEAKEEFTSGGPLGQKRDPKEWIPRPPE-KYALSGHRSPV 111
Query: 749 TXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGS 928
T + D T++VWD ER +K +V + S+ G
Sbjct: 112 TRVIFHPVFSVMVSASEDATIKVWDYET-GDFERTLKGHTDSVQDI-------SFDHSGK 163
Query: 929 KIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDKRLYTGEIQ* 1108
+A+ SAD + +WD + + GH +++ VA P+ I+SA+ DK + E+Q
Sbjct: 164 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSAARDKTIKMWEVQT 223
Query: 1109 RYGMEDST 1132
Y ++ T
Sbjct: 224 GYCVKTFT 231
>ref|NP_999497.1| G-beta like protein [Sus scrofa]
Length = 317
Score = 90.1 bits (222), Expect = 1e-19
Identities = 83/304 (27%), Positives = 120/304 (39%), Gaps = 50/304 (16%)
Frame = +2
Query: 218 LSGHEGEVYCCKFHPN-GSTLASAGFDRLILLWNVYGDCDNYA----TLKGHSGAVMELH 382
L GH G V P + SA D+ I++W + D NY L+GHS V ++
Sbjct: 11 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 70
Query: 383 YNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTV 562
++DG S S D T+ +WD TG +R GHT V S + Q+V +GS D T+
Sbjct: 71 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIV-SGSRDKTI 129
Query: 563 KLWDIRK--KAAIQTFQNTYQVLAVTFNDTSDQ--IISGGIDNDIKVWDLRQNKLTYTMR 730
KLW+ K +Q ++ V V F+ S I+S G D +KVW+L KL
Sbjct: 130 KLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI 189
Query: 731 GHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRP-----------------FAPKER--- 850
GH + D +WD+ F+P
Sbjct: 190 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLC 249
Query: 851 -----CVKIF--QGN--VHNFEKNLLRCS------------WSPDGSKIAAGSADRFVYV 967
+KI+ +G V ++ ++ S WS DG + AG D V V
Sbjct: 250 AATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRV 309
Query: 968 WDTT 979
W T
Sbjct: 310 WQVT 313
>ref|NP_001012296.1| fizzy/cell division cycle 20 related 1 [Sus scrofa]
Length = 493
Score = 58.9 bits (141), Expect = 3e-10
Identities = 49/211 (23%), Positives = 86/211 (40%), Gaps = 5/211 (2%)
Frame = +2
Query: 209 IMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD-CDNYATLKGHSGAVMELHY 385
+ +L GH V + N L+S DR+IL ++ + L+GH V L +
Sbjct: 264 LSMLEGHTARVGALAW--NADQLSSGSRDRMILQRDIRTPPLQSERRLQGHRQEVCGLKW 321
Query: 386 NTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSC--YPARRGPQLVCTGSDDGT 559
+TD +L S D + VW+ + V++ H + V + P + G G+ D
Sbjct: 322 STDHQLLASGGNDNKLLVWNHSSLSPVQQYTEHLAAVKAIAWSPHQHGLLASGGGTADRC 381
Query: 560 VKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIIS--GGIDNDIKVWDLRQNKLTYTMRG 733
++ W+ +Q QV + ++ +++++S G N I VW + G
Sbjct: 382 IRFWNTLTGQPLQCIDTGSQVCNLAWSKHANELVSTHGYSQNQILVWKYPSLTQVAKLTG 441
Query: 734 HADSVTXXXXXXXXXXXXXNAMDNTVRVWDV 826
H+ V A D T+R W+V
Sbjct: 442 HSYRVLYLAMSPDGEAIVTGAGDETLRFWNV 472
Score = 55.1 bits (131), Expect = 5e-09
Identities = 58/281 (20%), Positives = 112/281 (39%), Gaps = 12/281 (4%)
Frame = +2
Query: 281 SAGFDRLILLWNVYGDCDNYAT----LKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDS 448
S G + LW+ C + T L +V + ++ G+++ + V +WD+
Sbjct: 202 SVGLGTCVYLWSA---CTSQVTRLCDLSVEGDSVTSVGWSERGNLVAVGTHKGFVQIWDA 258
Query: 449 ETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRK---KAAIQTFQNTYQ 619
G+++ L+GHT+ V + A QL +GS D + DIR ++ + + +
Sbjct: 259 AAGKKLSMLEGHTARVGAL--AWNADQL-SSGSRDRMILQRDIRTPPLQSERRLQGHRQE 315
Query: 620 VLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXX---XXXXXXXXXX 790
V + ++ + SGG DN + VW+ H +V
Sbjct: 316 VCGLKWSTDHQLLASGGNDNKLLVWNHSSLSPVQQYTEHLAAVKAIAWSPHQHGLLASGG 375
Query: 791 NAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAA--GSADRFVY 964
D +R W+ P + C+ + + +WS +++ + G + +
Sbjct: 376 GTADRCIRFWNTLTGQPLQ-CI--------DTGSQVCNLAWSKHANELVSTHGYSQNQIL 426
Query: 965 VWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDKRL 1087
VW S + KL GH+ + +A PD I++ + D+ L
Sbjct: 427 VWKYPSLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETL 467
Database: RefSeqSP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 434,620
Number of sequences in database: 1040
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,409,242
Number of Sequences: 1040
Number of extensions: 34178
Number of successful extensions: 129
Number of sequences better than 1.0e-05: 3
Number of HSP's better than 0.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 434,620
effective HSP length: 81
effective length of database: 350,380
effective search space used: 154167200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0112_F03
(1567 letters)
Database: RefSeqMP
45,328 sequences; 21,768,885 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079921.1| U5 snRNP-specific protein (Prp8-binding) [Mus m... 553 e-169
Alignment gi|NP_081389.1| WD repeat domain 5B [Mus musculus] 166 8e-41
Alignment gi|NP_543124.1| WD repeat domain 5 [Mus musculus] 157 4e-38
Alignment gi|NP_081630.1| WD repeat domain 51A [Mus musculus] 124 4e-28
Alignment gi|NP_082016.1| WD repeat domain 51B [Mus musculus] 121 2e-27
Alignment gi|NP_084122.2| APG16L beta isoform [Mus musculus] 120 4e-27
Alignment gi|NP_083963.1| hypothetical protein LOC76646 [Mus musculus] 119 9e-27
Alignment gi|NP_083081.2| katanin p80 (WD40-containing) subunit B 1 [Mus ... 118 2e-26
Alignment gi|NP_038653.1| platelet-activating factor acetylhydrolase, iso... 109 7e-24
Alignment gi|NP_598727.1| TAF5-like RNA polymerase II, p300/CBP-associate... 103 4e-22
>ref|NP_079921.1| U5 snRNP-specific protein (Prp8-binding) [Mus musculus]
Length = 370
Score = 553 bits (1424), Expect(2) = e-169
Identities = 269/313 (85%), Positives = 271/313 (86%)
Frame = +2
Query: 32 MIEQQKRKGPELPLVPVKRQRHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCSSLQAPI 211
MIEQQKRKGPELPLVPVKR RHE RCSSLQAPI
Sbjct: 1 MIEQQKRKGPELPLVPVKRPRHELLLGAAGAGPGAGPQQATPGALLQAGPPRCSSLQAPI 60
Query: 212 MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT 391
MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT
Sbjct: 61 MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT 120
Query: 392 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 571
DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW
Sbjct: 121 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 180
Query: 572 DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 751
DIRK+AA+QTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT
Sbjct: 181 DIRKRAAVQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 240
Query: 752 XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 931
NAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK
Sbjct: 241 DLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 300
Query: 932 IAAGSADRFVYVW 970
IAAGSADRFVYVW
Sbjct: 301 IAAGSADRFVYVW 313
Score = 63.5 bits (153), Expect(2) = e-169
Identities = 32/50 (64%), Positives = 34/50 (68%)
Frame = +3
Query: 975 PQAGGFCINYPAMLAPSMKWLSTLTNQSFSQHPVTRDCIRGRFSEDMEWK 1124
PQA G C + LAPSMKWLST T+ S SQHPVTR C R SED EWK
Sbjct: 315 PQAEGSCTSCLVTLAPSMKWLSTPTSPSSSQHPVTRGCTWVRSSEDGEWK 364
>ref|NP_081389.1| WD repeat domain 5B [Mus musculus]
Length = 328
Score = 166 bits (419), Expect = 8e-41
Identities = 98/291 (33%), Positives = 154/291 (52%), Gaps = 4/291 (1%)
Frame = +2
Query: 212 MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYN 388
+ L+GH + KF PNG LAS+ D LI++W Y G+C TL GHS + ++ ++
Sbjct: 33 LTLAGHSAAISSVKFSPNGEWLASSAADALIIIWGAYDGNCKK--TLYGHSLEISDVAWS 90
Query: 389 TDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKL 568
+D S L SAS DKT+ VWD +G+ +K LKGH+ FV C L+ +GS D +VK+
Sbjct: 91 SDSSRLVSASDDKTLKVWDMRSGKCLKTLKGHSDFV-FCCDFNPPSNLIVSGSFDESVKI 149
Query: 569 WDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD- 742
W+++ ++T ++ + AV FN I+SG D ++WD + T+ +
Sbjct: 150 WEVKTGKCLKTLSAHSDPISAVNFNCNGSLIVSGSYDGLCRIWDAASGQCLRTLADEGNP 209
Query: 743 SVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPD 922
V+ +DNT+++WD + RC+K + G H EK L S+S
Sbjct: 210 PVSFVKFSPNGKYILTATLDNTLKLWDY----SRGRCLKTYTG--HKNEKYCLFASFSVT 263
Query: 923 GSK-IAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSAS 1072
G K + +GS D VY+W+ ++ I+ +L GH + A HP + II SA+
Sbjct: 264 GRKWVVSGSEDNMVYIWNLQTKEIVQRLQGHTDVVISAACHPTKNIIASAA 314
Score = 101 bits (252), Expect = 2e-21
Identities = 57/208 (27%), Positives = 103/208 (49%), Gaps = 7/208 (3%)
Frame = +2
Query: 218 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYNTD 394
L GH V+CC F+P + + S FD + +W V G C TL HS + +++N +
Sbjct: 119 LKGHSDFVFCCDFNPPSNLIVSGSFDESVKIWEVKTGKC--LKTLSAHSDPISAVNFNCN 176
Query: 395 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 574
GS++ S S D +WD+ +G+ ++ L + S + + T + D T+KLWD
Sbjct: 177 GSLIVSGSYDGLCRIWDAASGQCLRTLADEGNPPVSFVKFSPNGKYILTATLDNTLKLWD 236
Query: 575 IRKKAAIQTF---QNTYQVLAVTFNDTSDQ-IISGGIDNDIKVWDLRQNKLTYTMRGHAD 742
+ ++T+ +N L +F+ T + ++SG DN + +W+L+ ++ ++GH D
Sbjct: 237 YSRGRCLKTYTGHKNEKYCLFASFSVTGRKWVVSGSEDNMVYIWNLQTKEIVQRLQGHTD 296
Query: 743 SVTXXXXXXXXXXXXXNAMDN--TVRVW 820
V A++N T++VW
Sbjct: 297 VVISAACHPTKNIIASAALENDKTIKVW 324
Score = 51.6 bits (122), Expect = 2e-06
Identities = 34/131 (25%), Positives = 60/131 (45%)
Frame = +2
Query: 713 LTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEK 892
L T+ GH+ +++ +A D + +W A C K G H+ E
Sbjct: 31 LRLTLAGHSAAISSVKFSPNGEWLASSAADALIIIWG----AYDGNCKKTLYG--HSLE- 83
Query: 893 NLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSAS 1072
+ +WS D S++ + S D+ + VWD S + L L GH+ + F+P +I+S S
Sbjct: 84 -ISDVAWSSDSSRLVSASDDKTLKVWDMRSGKCLKTLKGHSDFVFCCDFNPPSNLIVSGS 142
Query: 1073 SDKRLYTGEIQ 1105
D+ + E++
Sbjct: 143 FDESVKIWEVK 153
>ref|NP_543124.1| WD repeat domain 5 [Mus musculus]
Length = 334
Score = 157 bits (396), Expect = 4e-38
Identities = 96/290 (33%), Positives = 153/290 (52%), Gaps = 5/290 (1%)
Frame = +2
Query: 218 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDG 397
L+GH V KF PNG LAS+ D+LI +W Y D T+ GH + ++ +++D
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLGISDVAWSSDS 99
Query: 398 SMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQ--LVCTGSDDGTVKLW 571
++L SAS DKT+ +WD +G+ +K LKGH+++V C PQ L+ +GS D +V++W
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC---NFNPQSNLIVSGSFDESVRIW 156
Query: 572 DIRKKAAIQTF-QNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD-S 745
D++ ++T ++ V AV FN I+S D ++WD + T+ +
Sbjct: 157 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 216
Query: 746 VTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDG 925
V+ +DNT+++WD K +C+K + G H EK + ++S G
Sbjct: 217 VSFVKFSPNGKYILAATLDNTLKLWDY----SKGKCLKTYTG--HKNEKYCIFANFSVTG 270
Query: 926 SK-IAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSAS 1072
K I +GS D VY+W+ ++ I+ KL GH + A HP E II SA+
Sbjct: 271 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 320
Score = 106 bits (265), Expect = 6e-23
Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 7/208 (3%)
Frame = +2
Query: 218 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYNTD 394
L GH V+CC F+P + + S FD + +W+V G C TL HS V +H+N D
Sbjct: 125 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRD 182
Query: 395 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 574
GS++ S+S D +WD+ +G+ +K L + S + + + D T+KLWD
Sbjct: 183 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242
Query: 575 IRKKAAIQTF---QNTYQVLAVTFNDTSDQ-IISGGIDNDIKVWDLRQNKLTYTMRGHAD 742
K ++T+ +N + F+ T + I+SG DN + +W+L+ ++ ++GH D
Sbjct: 243 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 302
Query: 743 SVTXXXXXXXXXXXXXNAMDN--TVRVW 820
V A++N T+++W
Sbjct: 303 VVISTACHPTENIIASAALENDKTIKLW 330
Score = 73.9 bits (180), Expect = 4e-13
Identities = 41/157 (26%), Positives = 74/157 (47%)
Frame = +2
Query: 608 NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXX 787
+T V +V F+ + + S D IK+W K T+ GH ++
Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 103
Query: 788 XNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYV 967
+ D T+++WDV +C+K +G+ + C+++P + I +GS D V +
Sbjct: 104 SASDDKTLKIWDVS----SGKCLKTLKGH----SNYVFCCNFNPQSNLIVSGSFDESVRI 155
Query: 968 WDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSD 1078
WD + + L LP H+ ++ V F+ D +I+S+S D
Sbjct: 156 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 192
Score = 50.1 bits (118), Expect = 7e-06
Identities = 26/131 (19%), Positives = 58/131 (44%)
Frame = +2
Query: 713 LTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEK 892
L +T+ GH +V+ ++ D +++W F+ + +
Sbjct: 37 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--------FEKTISGHKL 88
Query: 893 NLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSAS 1072
+ +WS D + + + S D+ + +WD +S + L L GH+ + F+P +I+S S
Sbjct: 89 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 148
Query: 1073 SDKRLYTGEIQ 1105
D+ + +++
Sbjct: 149 FDESVRIWDVK 159
>ref|NP_081630.1| WD repeat domain 51A [Mus musculus]
Length = 405
Score = 124 bits (310), Expect = 4e-28
Identities = 86/289 (29%), Positives = 127/289 (43%), Gaps = 1/289 (0%)
Frame = +2
Query: 224 GHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSM 403
GH V C F N LAS D +++W++ Y GH AV ++++ G +
Sbjct: 17 GHRDAVTCVDFSLNTKHLASGSMDSTLMIWHMKSQSRAYR-FTGHKDAVTCVNFSPSGHL 75
Query: 404 LFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDI-R 580
L S S DKTV +W + HT+ V S + G LV T SDD TVK+W R
Sbjct: 76 LASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSLV-TASDDKTVKVWSTHR 134
Query: 581 KKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXX 760
++ Q+ V F+ I+S D +K+WD + ++ H VT
Sbjct: 135 QRFLFSLTQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECIHSYCEHGGFVTYVD 194
Query: 761 XXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAA 940
MDNTV+VWD R R ++ +Q +H+ N L S+ P G+ +
Sbjct: 195 FHPSGTCIAAAGMDNTVKVWDART----HRLLQHYQ--LHSAAVNAL--SFHPSGNYLIT 246
Query: 941 GSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDKRL 1087
S+D + + D R+LY L GH G VAF S SD+++
Sbjct: 247 ASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQV 295
Score = 109 bits (272), Expect = 9e-24
Identities = 72/253 (28%), Positives = 121/253 (47%), Gaps = 3/253 (1%)
Frame = +2
Query: 221 SGHEGEVYCCKFHPNGSTLASAGFDRLILLW--NVYGDCDNYATLKGHSGAVMELHYNTD 394
+GH+ V C F P+G LAS D+ + +W NV G+ + H+ V +H+ +D
Sbjct: 58 TGHKDAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKGES---TVFRAHTATVRSVHFCSD 114
Query: 395 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 574
G L +AS DKTV VW + + L H ++V C +L+ + SDD TVKLWD
Sbjct: 115 GQSLVTASDDKTVKVWSTHRQRFLFSLTQHINWVR-CAKFSPDGRLIVSASDDKTVKLWD 173
Query: 575 IRKKAAIQTF-QNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 751
+ I ++ ++ V V F+ + I + G+DN +KVWD R ++L + H+ +V
Sbjct: 174 KTSRECIHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDARTHRLLQHYQLHSAAVN 233
Query: 752 XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 931
+ D+T+++ D+ + R + +H + ++S G
Sbjct: 234 ALSFHPSGNYLITASSDSTLKILDLM----EGRLLY----TLHGHQGPATTVAFSRTGEY 285
Query: 932 IAAGSADRFVYVW 970
A+G +D V VW
Sbjct: 286 FASGGSDEQVMVW 298
Score = 100 bits (250), Expect = 3e-21
Identities = 65/250 (26%), Positives = 113/250 (45%), Gaps = 4/250 (1%)
Frame = +2
Query: 350 KGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQ 529
KGH AV + ++ + L S S D T+ +W ++ R R GH V +C
Sbjct: 16 KGHRDAVTCVDFSLNTKHLASGSMDSTLMIWHMKSQSRAYRFTGHKDAV-TCVNFSPSGH 74
Query: 530 LVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQ 706
L+ +GS D TV++W K F+ +T V +V F +++ D +KVW +
Sbjct: 75 LLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSLVTASDDKTVKVWSTHR 134
Query: 707 NKLTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNF 886
+ +++ H + V + D TV++WD K + +H++
Sbjct: 135 QRFLFSLTQHINWVRCAKFSPDGRLIVSASDDKTVKLWD-----------KTSRECIHSY 183
Query: 887 EKN---LLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPI 1057
++ + + P G+ IAA D V VWD + R+L H+ ++N ++FHP
Sbjct: 184 CEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDARTHRLLQHYQLHSAAVNALSFHPSGNY 243
Query: 1058 ILSASSDKRL 1087
+++ASSD L
Sbjct: 244 LITASSDSTL 253
Score = 75.1 bits (183), Expect = 2e-13
Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 7/166 (4%)
Frame = +2
Query: 218 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWN------VYGDCDNYATLKGHSGAVMEL 379
L+ H V C KF P+G + SA D+ + LW+ ++ C+ H G V +
Sbjct: 141 LTQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECIHSYCE-------HGGFVTYV 193
Query: 380 HYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGT 559
++ G+ + +A D TV VWD+ T ++ + H++ VN+ G L+ T S D T
Sbjct: 194 DFHPSGTCIAAAGMDNTVKVWDARTHRLLQHYQLHSAAVNALSFHPSGNYLI-TASSDST 252
Query: 560 VKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVW 694
+K+ D+ + + T + V F+ T + SGG D + VW
Sbjct: 253 LKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVMVW 298
>ref|NP_082016.1| WD repeat domain 51B [Mus musculus]
Length = 476
Score = 121 bits (303), Expect = 2e-27
Identities = 81/302 (26%), Positives = 142/302 (47%), Gaps = 3/302 (0%)
Frame = +2
Query: 191 SSLQAPIMLLS--GHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSG 364
S L+ PI+ S GH+ + F PN +A+A +D ++LW++ Y + GH
Sbjct: 3 SGLEDPILERSFKGHKAAITSADFSPNCKQIATASWDTFLMLWSLKPHARAYRYV-GHKD 61
Query: 365 AVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTG 544
V L ++ G++L SAS D+TV +W + + K HT+ V S + G QL+ T
Sbjct: 62 VVTSLQFSPQGNLLASASRDRTVRLWVLDRKGKSSEFKAHTAPVRSVDFSADG-QLLVTA 120
Query: 545 SDDGTVKLWDI-RKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTY 721
S+D ++K+W + R++ +++T+ V F+ I+S D IK+WD +
Sbjct: 121 SEDKSIKVWSMFRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVN 180
Query: 722 TMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLL 901
D+ V++WD+R + ++ +Q VH+ N L
Sbjct: 181 NFSDSVGFANFVDFNPNGTCIASAGSDHAVKIWDIR----MNKLLQHYQ--VHSCGVNCL 234
Query: 902 RCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDK 1081
S+ P G+ + S+D V + D R++Y L GH G + V+F D ++ S +D
Sbjct: 235 --SFHPLGNSLVTASSDGTVKMLDLIEGRLIYTLQGHTGPVFTVSFSKDGELLTSGGADA 292
Query: 1082 RL 1087
++
Sbjct: 293 QV 294
Score = 110 bits (276), Expect = 3e-24
Identities = 74/252 (29%), Positives = 116/252 (46%), Gaps = 1/252 (0%)
Frame = +2
Query: 224 GHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSM 403
GH+ V +F P G+ LASA DR + LW V + K H+ V + ++ DG +
Sbjct: 58 GHKDVVTSLQFSPQGNLLASASRDRTVRLW-VLDRKGKSSEFKAHTAPVRSVDFSADGQL 116
Query: 404 LFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRK 583
L +AS DK++ VW + L HT +V C +L+ + S+D T+K+WD
Sbjct: 117 LVTASEDKSIKVWSMFRQRFLYSLYRHTHWVR-CAKFSPDGRLIVSCSEDKTIKIWDTTN 175
Query: 584 KAAIQTFQNTYQVLA-VTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXX 760
K + F ++ V FN I S G D+ +K+WD+R NKL + H+ V
Sbjct: 176 KQCVNNFSDSVGFANFVDFNPNGTCIASAGSDHAVKIWDIRMNKLLQHYQVHSCGVNCLS 235
Query: 761 XXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAA 940
+ D TV++ D+ + R + QG+ + S+S DG + +
Sbjct: 236 FHPLGNSLVTASSDGTVKMLDLI----EGRLIYTLQGHTGP----VFTVSFSKDGELLTS 287
Query: 941 GSADRFVYVWDT 976
G AD V +W T
Sbjct: 288 GGADAQVLIWRT 299
Score = 80.5 bits (197), Expect = 5e-15
Identities = 61/255 (23%), Positives = 104/255 (40%), Gaps = 1/255 (0%)
Frame = +2
Query: 344 TLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRG 523
+ KGH A+ ++ + + +AS D + +W + R R GH V S + +G
Sbjct: 13 SFKGHKAAITSADFSPNCKQIATASWDTFLMLWSLKPHARAYRYVGHKDVVTSLQFSPQG 72
Query: 524 PQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDL 700
L+ + S D TV+LW + +K F+ +T V +V F+ +++ D IKVW +
Sbjct: 73 -NLLASASRDRTVRLWVLDRKGKSSEFKAHTAPVRSVDFSADGQLLVTASEDKSIKVWSM 131
Query: 701 RQNKLTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVH 880
+ + Y++ H V RC K
Sbjct: 132 FRQRFLYSLYRHTHWV---------------------------------RCAK------- 151
Query: 881 NFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPII 1060
+SPDG I + S D+ + +WDTT+++ + G N V F+P+ I
Sbjct: 152 ----------FSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDSVGFANFVDFNPNGTCI 201
Query: 1061 LSASSDKRLYTGEIQ 1105
SA SD + +I+
Sbjct: 202 ASAGSDHAVKIWDIR 216
>ref|NP_084122.2| APG16L beta isoform [Mus musculus]
Length = 607
Score = 120 bits (301), Expect = 4e-27
Identities = 85/295 (28%), Positives = 135/295 (45%), Gaps = 5/295 (1%)
Frame = +2
Query: 215 LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD-CDNYATLKGHSGAVMELHYNT 391
+ H+GEV +F P LA+ G DR + LW +GD C+ +L G + + + +++
Sbjct: 317 VFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEAFGDKCEFKGSLSGSNAGITSIEFDS 376
Query: 392 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 571
G+ L +AS D +W + L GH+ V S ++V +GS D T+KLW
Sbjct: 377 AGAYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNARIV-SGSHDRTLKLW 435
Query: 572 DIRKKAAIQTFQNTYQVLAVTFND---TSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD 742
D+R K I+T + ND T ++SG D I+ WD+R + M
Sbjct: 436 DLRSKVCIKTV-----FAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESVVREME-LLG 489
Query: 743 SVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPD 922
+T + D+ ++V D+R A K+ F + R +SPD
Sbjct: 490 KITALDLNPERTELLSCSRDDLLKVIDLRTNAVKQ----TFSAPGFKCGSDWTRVVFSPD 545
Query: 923 GSKIAAGSADRFVYVWDTTSRRILYKL-PGHAGSINEVAFHPDEPIILSASSDKR 1084
GS +AAGSA+ +YVW + ++ L H+ SIN VA+ P ++S R
Sbjct: 546 GSYVAAGSAEGSLYVWSVLTGKVEKVLSKQHSSSINAVAWAPSGLHVVSVDKGSR 600
>ref|NP_083963.1| hypothetical protein LOC76646 [Mus musculus]
Length = 303
Score = 119 bits (298), Expect = 9e-27
Identities = 71/239 (29%), Positives = 118/239 (49%), Gaps = 1/239 (0%)
Frame = +2
Query: 356 HSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLV 535
H G V ++ DG L +AS D V VW +++G + RL GH V SC + G +L+
Sbjct: 25 HHGEVNCSAFSPDGRTLLTASDDGCVYVWGTKSGRLLWRLAGHRGPVKSCCFSPDG-RLI 83
Query: 536 CTGSDDGTVKLWDIRKKAAIQTFQNTYQ-VLAVTFNDTSDQIISGGIDNDIKVWDLRQNK 712
+ S D +++LWD+ + + + + V V+F+ S Q+ SGG D VW+++ +
Sbjct: 84 ASSSSDHSIRLWDVARSKCLHVLKGHQRSVETVSFSPDSKQLASGGWDKRAIVWEVQSGR 143
Query: 713 LTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEK 892
+ + GH DS+ + D+TV +WD+R P + N+
Sbjct: 144 RVHLLVGHCDSIQSSDFSPTSDSLATGSWDSTVHIWDLRASTP-----VVSYHNLEGHTG 198
Query: 893 NLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSA 1069
N+ +S G +A+GS D+ + VW T+ + +L GH +N +AF PDE + SA
Sbjct: 199 NISCLCYSASG-LLASGSWDKTICVWKPTTNNLPLQLKGHTIWVNSLAFSPDELKLASA 256
Score = 104 bits (259), Expect = 3e-22
Identities = 73/249 (29%), Positives = 111/249 (44%), Gaps = 5/249 (2%)
Frame = +2
Query: 218 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYNTD 394
L+GH G V C F P+G +AS+ D I LW+V C + LKGH +V + ++ D
Sbjct: 64 LAGHRGPVKSCCFSPDGRLIASSSSDHSIRLWDVARSKCLH--VLKGHQRSVETVSFSPD 121
Query: 395 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 574
L S DK VW+ ++G RV L GH + S + L TGS D TV +WD
Sbjct: 122 SKQLASGGWDKRAIVWEVQSGRRVHLLVGHCDSIQSSDFSPTSDSL-ATGSWDSTVHIWD 180
Query: 575 IRKKAAIQTFQN----TYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD 742
+R + ++ N T + + ++ S + SG D I VW N L ++GH
Sbjct: 181 LRASTPVVSYHNLEGHTGNISCLCYS-ASGLLASGSWDKTICVWKPTTNNLPLQLKGHTI 239
Query: 743 SVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPD 922
V TV+VWD +C++ +G + C ++PD
Sbjct: 240 WVNSLAFSPDELKLASAGYSRTVKVWD----CLTGKCLETLKGMLDVAH----ACIFTPD 291
Query: 923 GSKIAAGSA 949
G + +G+A
Sbjct: 292 GKLLVSGAA 300
Score = 68.2 bits (165), Expect = 2e-11
Identities = 38/167 (22%), Positives = 77/167 (46%)
Frame = +2
Query: 605 QNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXX 784
Q+ +V F+ +++ D + VW + +L + + GH V
Sbjct: 24 QHHGEVNCSAFSPDGRTLLTASDDGCVYVWGTKSGRLLWRLAGHRGPVKSCCFSPDGRLI 83
Query: 785 XXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVY 964
++ D+++R+WDV + +C+ + +G+ + E S+SPD ++A+G D+
Sbjct: 84 ASSSSDHSIRLWDVA----RSKCLHVLKGHQRSVET----VSFSPDSKQLASGGWDKRAI 135
Query: 965 VWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDKRLYTGEIQ 1105
VW+ S R ++ L GH SI F P + + S D ++ +++
Sbjct: 136 VWEVQSGRRVHLLVGHCDSIQSSDFSPTSDSLATGSWDSTVHIWDLR 182
>ref|NP_083081.2| katanin p80 (WD40-containing) subunit B 1 [Mus musculus]
Length = 658
Score = 118 bits (295), Expect = 2e-26
Identities = 64/216 (29%), Positives = 112/216 (51%), Gaps = 2/216 (0%)
Frame = +2
Query: 446 SETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQV 622
++T +++ + H S V+S + +L+ TG DD V LW I K I + +T V
Sbjct: 7 TKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPV 66
Query: 623 LAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNAMD 802
+V N + I++G I+VWDL K+ T+ GH ++ + D
Sbjct: 67 ESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQD 126
Query: 803 NTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRC-SWSPDGSKIAAGSADRFVYVWDTT 979
+++WD+R ++ CV ++G+ +RC +SPDG +A+ + D V +WD T
Sbjct: 127 TNIKLWDIR----RKGCVFRYRGH-----SQAVRCLRFSPDGKWLASAADDHTVKLWDLT 177
Query: 980 SRRILYKLPGHAGSINEVAFHPDEPIILSASSDKRL 1087
+ +++ + PGH G +N V FHP+E ++ S SSD+ +
Sbjct: 178 AGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTI 213
Score = 93.6 bits (231), Expect = 5e-19
Identities = 64/239 (26%), Positives = 108/239 (45%), Gaps = 2/239 (0%)
Frame = +2
Query: 263 NGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVW 442
+G LA+ G D + LW++ + +L GH+ V + NT ++ + S ++ VW
Sbjct: 32 SGRLLATGGDDCRVNLWSI-NKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVW 90
Query: 443 DSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQ- 619
D E + ++ L GH + + S G + V +GS D +KLWDIR+K + ++ Q
Sbjct: 91 DLEAAKILRTLMGHKANICSLDFHPYG-EFVASGSQDTNIKLWDIRRKGCVFRYRGHSQA 149
Query: 620 VLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNAM 799
V + F+ + S D+ +K+WDL K+ GH V +
Sbjct: 150 VRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSS 209
Query: 800 DNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRF-VYVWD 973
D T+R WD+ F C++ G V + ++PDG + +G D VY W+
Sbjct: 210 DRTIRFWDLEKFQVVS-CIEGEPGPVRS-------VLFNPDGCCLYSGCQDSLRVYGWE 260
Score = 92.8 bits (229), Expect = 9e-19
Identities = 61/237 (25%), Positives = 110/237 (46%), Gaps = 2/237 (0%)
Frame = +2
Query: 395 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 574
G +L + D V +W + L GHTS V S +L+ GS G++++WD
Sbjct: 33 GRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVR-LNTPEELIVAGSQSGSIRVWD 91
Query: 575 IRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 751
+ ++T + + ++ F+ + + SG D +IK+WD+R+ + RGH+ +V
Sbjct: 92 LEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVR 151
Query: 752 XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 931
A D+TV++WD+ + + F G H N++ + P+
Sbjct: 152 CLRFSPDGKWLASAADDHTVKLWDLTA----GKMMSEFPG--HTGPVNVVE--FHPNEYL 203
Query: 932 IAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDK-RLYTGE 1099
+A+GS+DR + WD +++ + G G + V F+PD + S D R+Y E
Sbjct: 204 LASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDSLRVYGWE 260
Score = 78.2 bits (191), Expect = 2e-14
Identities = 52/157 (33%), Positives = 74/157 (47%), Gaps = 3/157 (1%)
Frame = +2
Query: 218 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY--GDCDNYATLKGHSGAVMELHYNT 391
L GH+ + FHP G +AS D I LW++ G Y +GHS AV L ++
Sbjct: 101 LMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRY---RGHSQAVRCLRFSP 157
Query: 392 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 571
DG L SA+ D TV +WD G+ + GHT VN L+ +GS D T++ W
Sbjct: 158 DGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVN-VVEFHPNEYLLASGSSDRTIRFW 216
Query: 572 DIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDN 679
D+ K + + V +V FN + SG D+
Sbjct: 217 DLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDS 253
>ref|NP_038653.1| platelet-activating factor acetylhydrolase, isoform 1b, beta1 subunit
[Mus musculus]
Length = 410
Score = 109 bits (273), Expect = 7e-24
Identities = 81/274 (29%), Positives = 124/274 (45%), Gaps = 22/274 (8%)
Frame = +2
Query: 332 DNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYP 511
+ YA L GH V + ++ S++ SAS D T+ VWD ETG+ + LKGHT V
Sbjct: 100 EKYA-LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF 158
Query: 512 ARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIK 688
G +L+ + S D T+KLWD + I+T + + V +V D I+S D IK
Sbjct: 159 DHSG-KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIK 217
Query: 689 VWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQ 868
+W+++ T GH + V + D TVRVW V A KE ++ +
Sbjct: 218 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV---ATKECKAELRE 274
Query: 869 GNVHNFEKNLLRC-SWSPDGSK--------------------IAAGSADRFVYVWDTTSR 985
++++ C SW+P+ S + +GS D+ + +WD ++
Sbjct: 275 ------HEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG 328
Query: 986 RILYKLPGHAGSINEVAFHPDEPIILSASSDKRL 1087
L L GH + V FH ILS + DK L
Sbjct: 329 MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTL 362
Score = 103 bits (257), Expect = 5e-22
Identities = 79/315 (25%), Positives = 136/315 (43%), Gaps = 21/315 (6%)
Frame = +2
Query: 218 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDG 397
LSGH V FHP S + SA D I +W+ Y D TLKGH+ +V ++ ++ G
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWD-YETGDFERTLKGHTDSVQDISFDHSG 162
Query: 398 SMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDI 577
+L S S D T+ +WD + E ++ + GH V+S G +V + S D T+K+W++
Sbjct: 163 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIV-SASRDKTIKMWEV 221
Query: 578 RKKAAIQTFQNTYQ-VLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTX 754
+ ++TF + V V N I S D ++VW + + +R H V
Sbjct: 222 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVEC 281
Query: 755 XXXXXXXXXXXXN--------------------AMDNTVRVWDVRPFAPKERCVKIFQGN 874
+ + D T+++WDV C+ G+
Sbjct: 282 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST----GMCLMTLVGH 337
Query: 875 VHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEP 1054
N+ + +L + G I + + D+ + VWD ++R + L H + + FH P
Sbjct: 338 -DNWVRGVL---FHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP 393
Query: 1055 IILSASSDKRLYTGE 1099
+++ S D+ + E
Sbjct: 394 YVVTGSVDQTVKVWE 408
Score = 88.6 bits (218), Expect = 2e-17
Identities = 66/229 (28%), Positives = 97/229 (42%), Gaps = 22/229 (9%)
Frame = +2
Query: 209 IMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHY 385
I + GH+ V PNG + SA D+ I +W V G C T GH V +
Sbjct: 185 IRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYC--VKTFTGHREWVRMVRP 242
Query: 386 NTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFV-------NSCYPA---------- 514
N DG+++ S S D+TV VW T E L+ H V S Y +
Sbjct: 243 NQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETK 302
Query: 515 ---RRGPQLVCTGSDDGTVKLWDIRKKAAIQTF-QNTYQVLAVTFNDTSDQIISGGIDND 682
+ GP L+ +GS D T+K+WD+ + T + V V F+ I+S D
Sbjct: 303 KSGKPGPFLL-SGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT 361
Query: 683 IKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVR 829
++VWD + + T+ H VT ++D TV+VW+ R
Sbjct: 362 LRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 57.0 bits (136), Expect = 5e-08
Identities = 48/188 (25%), Positives = 78/188 (41%), Gaps = 3/188 (1%)
Frame = +2
Query: 578 RKKAAIQTFQNTYQVLAVTFNDTSDQIISGGI---DNDIKVWDLRQNKLTYTMRGHADSV 748
+K ++ Q L N+ ++ SGG D K W R + Y + GH V
Sbjct: 53 KKWTSVIRLQKKVMELESKLNEAKEEFTSGGPLGQKRDPKEWIPRPPE-KYALSGHRSPV 111
Query: 749 TXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGS 928
T + D T++VWD ER +K +V + S+ G
Sbjct: 112 TRVIFHPVFSVMVSASEDATIKVWDYET-GDFERTLKGHTDSVQDI-------SFDHSGK 163
Query: 929 KIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDKRLYTGEIQ* 1108
+A+ SAD + +WD + + GH +++ VA P+ I+SAS DK + E+Q
Sbjct: 164 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQT 223
Query: 1109 RYGMEDST 1132
Y ++ T
Sbjct: 224 GYCVKTFT 231
>ref|NP_598727.1| TAF5-like RNA polymerase II, p300/CBP-associated factor
(PCAF)-associated factor [Mus musculus]
Length = 589
Score = 103 bits (258), Expect = 4e-22
Identities = 62/206 (30%), Positives = 99/206 (48%), Gaps = 1/206 (0%)
Frame = +2
Query: 215 LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTD 394
+L GH G VY +F + S L S D I W++ G N +GH+ V ++ +
Sbjct: 337 ILRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDL-GSFTNTVLYQGHAYPVWDVDISPF 395
Query: 395 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 574
S S D+T +W + ++ GH + V+ C + TGS D TV+LW
Sbjct: 396 SLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVD-CVKFHPNSNYLATGSTDKTVRLWS 454
Query: 575 IRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 751
++ +++ F + VL+++F+ + S G D +K+WDL L +RGH DS+T
Sbjct: 455 AQQGNSVRLFTGHRGPVLSLSFSPNGKYLASAGEDQRLKLWDLASGTLFKELRGHTDSIT 514
Query: 752 XXXXXXXXXXXXXNAMDNTVRVWDVR 829
+MDN+VRVWD+R
Sbjct: 515 SLAFSPDSGLIASASMDNSVRVWDIR 540
Score = 84.7 bits (208), Expect = 2e-16
Identities = 43/126 (34%), Positives = 70/126 (55%), Gaps = 1/126 (0%)
Frame = +2
Query: 206 PIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHY 385
P+ + +GH +V C KFHPN + LA+ D+ + LW+ ++ GH G V+ L +
Sbjct: 418 PLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQ-QGNSVRLFTGHRGPVLSLSF 476
Query: 386 NTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNS-CYPARRGPQLVCTGSDDGTV 562
+ +G L SA D+ + +WD +G K L+GHT + S + G L+ + S D +V
Sbjct: 477 SPNGKYLASAGEDQRLKLWDLASGTLFKELRGHTDSITSLAFSPDSG--LIASASMDNSV 534
Query: 563 KLWDIR 580
++WDIR
Sbjct: 535 RVWDIR 540
Score = 82.8 bits (203), Expect = 9e-16
Identities = 78/285 (27%), Positives = 122/285 (42%), Gaps = 6/285 (2%)
Frame = +2
Query: 269 STLASAGFDR-LILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWD 445
S L +AGFD I LW++ LK E H+ + + T + +
Sbjct: 280 SKLLAAGFDNSCIKLWSLRSK-----KLKS------EPHHVDTSRIRLACDTLEEEENEE 328
Query: 446 SETGERVKRLKGHTSFVNSC-YPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQ 619
TG +K L+GH V S + A L C S+D +++ WD+ +Q + Y
Sbjct: 329 DNTGTEMKILRGHCGPVYSTRFLADSSGLLSC--SEDMSIRYWDLGSFTNTVLYQGHAYP 386
Query: 620 VLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMR---GHADSVTXXXXXXXXXXXXX 790
V V + S SG D ++W + TY +R GH V
Sbjct: 387 VWDVDISPFSLYFASGSHDRTARLWSFDR---TYPLRIYAGHLADVDCVKFHPNSNYLAT 443
Query: 791 NAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVW 970
+ D TVR+W A + V++F G+ +L S+SP+G +A+ D+ + +W
Sbjct: 444 GSTDKTVRLWS----AQQGNSVRLFTGH----RGPVLSLSFSPNGKYLASAGEDQRLKLW 495
Query: 971 DTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDKRLYTGEIQ 1105
D S + +L GH SI +AF PD +I SAS D + +I+
Sbjct: 496 DLASGTLFKELRGHTDSITSLAFSPDSGLIASASMDNSVRVWDIR 540
Score = 72.4 bits (176), Expect = 1e-12
Identities = 47/165 (28%), Positives = 76/165 (46%), Gaps = 1/165 (0%)
Frame = +2
Query: 212 MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT 391
+L GH V+ P AS DR LW+ + GH V + ++
Sbjct: 378 VLYQGHAYPVWDVDISPFSLYFASGSHDRTARLWS-FDRTYPLRIYAGHLADVDCVKFHP 436
Query: 392 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 571
+ + L + STDKTV +W ++ G V+ GH V S + G L G +D +KLW
Sbjct: 437 NSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLSFSPNGKYLASAG-EDQRLKLW 495
Query: 572 DIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLR 703
D+ + + +T + ++ F+ S I S +DN ++VWD+R
Sbjct: 496 DLASGTLFKELRGHTDSITSLAFSPDSGLIASASMDNSVRVWDIR 540
Database: RefSeqMP
Posted date: Aug 2, 2006 12:58 AM
Number of letters in database: 21,768,885
Number of sequences in database: 45,328
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,567,362
Number of Sequences: 45328
Number of extensions: 1680182
Number of successful extensions: 7845
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 4194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6133
length of database: 21,768,885
effective HSP length: 108
effective length of database: 16,873,461
effective search space used: 6968739393
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)