Animal-Genome cDNA OVRM1_0114_A04


Search to RefSeqBP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= OVRM1_0114_A04
         (2009 letters)

Database: RefSeqBP 
           33,508 sequences; 16,112,626 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_878222.1| PREDICTED: similar to Neuronal membrane glycopr...   547   e-155
Alignment   gi|XP_869276.1| PREDICTED: similar to Neuronal membrane glycopr...   547   e-155
Alignment   gi|XP_877931.1| PREDICTED: similar to Neuronal membrane glycopr...   540   e-153
Alignment   gi|XP_877839.1| PREDICTED: similar to Neuronal membrane glycopr...   535   e-152
Alignment   gi|XP_878028.1| PREDICTED: similar to Neuronal membrane glycopr...   505   e-143
Alignment   gi|XP_594847.2| PREDICTED: similar to Neuronal membrane glycopr...   481   e-135
Alignment   gi|XP_878121.1| PREDICTED: similar to glycoprotein M6B isoform ...   463   e-130
Alignment   gi|XP_877728.1| PREDICTED: similar to Neuronal membrane glycopr...   327   2e-89
Alignment   gi|XP_583987.2| PREDICTED: similar to glycoprotein M6A isoform ...   310   3e-84
Alignment   gi|NP_776574.2| proteolipid protein 1 [Bos taurus]                   270   4e-72

>ref|XP_878222.1| PREDICTED: similar to Neuronal membrane glycoprotein M6-b (M6b)
           isoform 8 [Bos taurus]
          Length = 284

 Score =  547 bits (1410), Expect = e-155
 Identities = 265/268 (98%), Positives = 268/268 (100%)
 Frame = +2

Query: 101 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 280
           GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL
Sbjct: 17  GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 76

Query: 281 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 460
           SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
Sbjct: 77  SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 136

Query: 461 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF 640
           YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQ+NGTAGVEQICVDIRQYGIIPWNAF
Sbjct: 137 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTAGVEQICVDIRQYGIIPWNAF 196

Query: 641 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASKMQ 820
           PG+ICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASKMQ
Sbjct: 197 PGRICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASKMQ 256

Query: 821 AYQDIKAKEEQELQDIQSRSKEQLNSYT 904
           AYQDIKAKEEQELQDIQSRSKEQLNSYT
Sbjct: 257 AYQDIKAKEEQELQDIQSRSKEQLNSYT 284


>ref|XP_869276.1| PREDICTED: similar to Neuronal membrane glycoprotein M6-b (M6b)
           isoform 2 [Bos taurus]
          Length = 324

 Score =  547 bits (1410), Expect = e-155
 Identities = 265/268 (98%), Positives = 268/268 (100%)
 Frame = +2

Query: 101 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 280
           GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL
Sbjct: 57  GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 116

Query: 281 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 460
           SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
Sbjct: 117 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 176

Query: 461 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF 640
           YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQ+NGTAGVEQICVDIRQYGIIPWNAF
Sbjct: 177 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTAGVEQICVDIRQYGIIPWNAF 236

Query: 641 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASKMQ 820
           PG+ICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASKMQ
Sbjct: 237 PGRICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASKMQ 296

Query: 821 AYQDIKAKEEQELQDIQSRSKEQLNSYT 904
           AYQDIKAKEEQELQDIQSRSKEQLNSYT
Sbjct: 297 AYQDIKAKEEQELQDIQSRSKEQLNSYT 324


>ref|XP_877931.1| PREDICTED: similar to Neuronal membrane glycoprotein M6-b (M6b)
           isoform 5 [Bos taurus]
          Length = 326

 Score =  540 bits (1390), Expect = e-153
 Identities = 263/270 (97%), Positives = 267/270 (98%), Gaps = 2/270 (0%)
 Frame = +2

Query: 101 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 280
           GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL
Sbjct: 57  GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 116

Query: 281 SEV--IQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVF 454
           SEV  + LMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVF
Sbjct: 117 SEVTKLDLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVF 176

Query: 455 LTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWN 634
           LTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQ+NGTAGVEQICVDIRQYGIIPWN
Sbjct: 177 LTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTAGVEQICVDIRQYGIIPWN 236

Query: 635 AFPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASK 814
           AFPG+ICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASK
Sbjct: 237 AFPGRICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASK 296

Query: 815 MQAYQDIKAKEEQELQDIQSRSKEQLNSYT 904
           MQAYQDIKAKEEQELQDIQSRSKEQLNSYT
Sbjct: 297 MQAYQDIKAKEEQELQDIQSRSKEQLNSYT 326


>ref|XP_877839.1| PREDICTED: similar to Neuronal membrane glycoprotein M6-b (M6b)
           isoform 4 [Bos taurus]
          Length = 334

 Score =  535 bits (1378), Expect = e-152
 Identities = 263/278 (94%), Positives = 266/278 (95%), Gaps = 10/278 (3%)
 Frame = +2

Query: 101 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 280
           GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL
Sbjct: 57  GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 116

Query: 281 SEV----------IQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGR 430
           S            IQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGR
Sbjct: 117 SRKCNHLGSSFHRIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGR 176

Query: 431 CISGMFVFLTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIR 610
           CISGMFVFLTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQ+NGTAGVEQICVDIR
Sbjct: 177 CISGMFVFLTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTAGVEQICVDIR 236

Query: 611 QYGIIPWNAFPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNW 790
           QYGIIPWNAFPG+ICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNW
Sbjct: 237 QYGIIPWNAFPGRICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNW 296

Query: 791 AYLKDASKMQAYQDIKAKEEQELQDIQSRSKEQLNSYT 904
           AYLKDASKMQAYQDIKAKEEQELQDIQSRSKEQLNSYT
Sbjct: 297 AYLKDASKMQAYQDIKAKEEQELQDIQSRSKEQLNSYT 334


>ref|XP_878028.1| PREDICTED: similar to Neuronal membrane glycoprotein M6-b (M6b)
           isoform 6 [Bos taurus]
          Length = 314

 Score =  505 bits (1300), Expect = e-143
 Identities = 250/268 (93%), Positives = 253/268 (94%)
 Frame = +2

Query: 101 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 280
           GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL
Sbjct: 57  GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 116

Query: 281 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 460
           SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
Sbjct: 117 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 176

Query: 461 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF 640
           YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQ+NGTAGVEQICVDIRQYGIIPWNAF
Sbjct: 177 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTAGVEQICVDIRQYGIIPWNAF 236

Query: 641 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASKMQ 820
           PG+ICGSALENICNTNE               GATVIALIHFLMILSSNWAYLKDASKMQ
Sbjct: 237 PGRICGSALENICNTNERKRE----------PGATVIALIHFLMILSSNWAYLKDASKMQ 286

Query: 821 AYQDIKAKEEQELQDIQSRSKEQLNSYT 904
           AYQDIKAKEEQELQDIQSRSKEQLNSYT
Sbjct: 287 AYQDIKAKEEQELQDIQSRSKEQLNSYT 314


>ref|XP_594847.2| PREDICTED: similar to Neuronal membrane glycoprotein M6-b (M6b)
           isoform 1 [Bos taurus]
          Length = 297

 Score =  481 bits (1237), Expect = e-135
 Identities = 237/268 (88%), Positives = 241/268 (89%)
 Frame = +2

Query: 101 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 280
           GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL
Sbjct: 57  GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 116

Query: 281 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 460
                                      +GFYTTSAVKELHGEFKTTACGRCISGMFVFLT
Sbjct: 117 ---------------------------KGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 149

Query: 461 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF 640
           YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQ+NGTAGVEQICVDIRQYGIIPWNAF
Sbjct: 150 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTAGVEQICVDIRQYGIIPWNAF 209

Query: 641 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASKMQ 820
           PG+ICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASKMQ
Sbjct: 210 PGRICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASKMQ 269

Query: 821 AYQDIKAKEEQELQDIQSRSKEQLNSYT 904
           AYQDIKAKEEQELQDIQSRSKEQLNSYT
Sbjct: 270 AYQDIKAKEEQELQDIQSRSKEQLNSYT 297


>ref|XP_878121.1| PREDICTED: similar to glycoprotein M6B isoform 2 isoform 7 [Bos
           taurus]
          Length = 301

 Score =  463 bits (1191), Expect = e-130
 Identities = 222/238 (93%), Positives = 231/238 (97%)
 Frame = +2

Query: 101 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 280
           GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL
Sbjct: 57  GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 116

Query: 281 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 460
           SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
Sbjct: 117 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 176

Query: 461 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF 640
           YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQ+NGTAGVEQICVDIRQYGIIPWNAF
Sbjct: 177 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTAGVEQICVDIRQYGIIPWNAF 236

Query: 641 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASK 814
           PG+ICGSALENICNTNEFYMSYHLFIVACAGAGATVIAL+ ++M  + N+A LK  S+
Sbjct: 237 PGRICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSR 294


>ref|XP_877728.1| PREDICTED: similar to Neuronal membrane glycoprotein M6-b (M6b)
           isoform 3 [Bos taurus]
          Length = 179

 Score =  327 bits (838), Expect = 2e-89
 Identities = 156/172 (90%), Positives = 165/172 (95%)
 Frame = +2

Query: 299 MQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLTYVLGVA 478
           MQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLTYVLGVA
Sbjct: 1   MQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLTYVLGVA 60

Query: 479 WLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAFPGKICG 658
           WLGVFGFSAVPVFMFYNIWSTCEVIK+PQ+NGTAGVEQICVDIRQYGIIPWNAFPG+ICG
Sbjct: 61  WLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTAGVEQICVDIRQYGIIPWNAFPGRICG 120

Query: 659 SALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASK 814
           SALENICNTNEFYMSYHLFIVACAGAGATVIAL+ ++M  + N+A LK  S+
Sbjct: 121 SALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSR 172


>ref|XP_583987.2| PREDICTED: similar to glycoprotein M6A isoform 1, partial [Bos
           taurus]
          Length = 268

 Score =  310 bits (794), Expect = 3e-84
 Identities = 153/278 (55%), Positives = 207/278 (74%), Gaps = 11/278 (3%)
 Frame = +2

Query: 104 CFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFST-----NTSD 268
           CFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F       +T D
Sbjct: 1   CFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTLD 60

Query: 269 HALLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMF 448
              +  +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S  F
Sbjct: 61  VFTMVYMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWF 120

Query: 449 VFLTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVE--QICVDIRQYGI 622
           + LTY+  +AWLGV  F+++PV+M++N+W+ C          T  VE   +C+D+RQ+GI
Sbjct: 121 IMLTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGI 172

Query: 623 IPWNAFPGKICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWA 793
           +       KIC +  EN   +C + E  M++HLFIVA AGAGA VIA++H+LM+LS+NWA
Sbjct: 173 VTIGE-EKKIC-TVSENFLRMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANWA 230

Query: 794 YLKDASKMQAYQDIKAKEEQELQDIQS-RSKEQLNSYT 904
           Y+KDA +MQ Y+DIK+KEEQEL DI S RSKE+LN+YT
Sbjct: 231 YVKDACRMQKYEDIKSKEEQELHDIHSTRSKERLNAYT 268


>ref|NP_776574.2| proteolipid protein 1 [Bos taurus]
          Length = 277

 Score =  270 bits (689), Expect = 4e-72
 Identities = 134/270 (49%), Positives = 172/270 (63%), Gaps = 35/270 (12%)
 Frame = +2

Query: 98  MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL 277
           MG  ECC +CL G P+ASLVAT LCF GVALFCGCGH AL GT  ++E +FS N  D+  
Sbjct: 1   MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60

Query: 278 LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGM---- 445
           L  VI   QYVIYG ASFFFLYG +LLAEGFYTT AV+++ G++KTT CG+ +S      
Sbjct: 61  LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGG 120

Query: 446 -------------------------------FVFLTYVLGVAWLGVFGFSAVPVFMFYNI 532
                                          FV +TY L V WL VF  SAVPV++++N 
Sbjct: 121 QKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNT 180

Query: 533 WSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAFPGKICGSALENICNTNEFYMSYHL 712
           W+TC+ I AP S  +A +  +C D R YG++PWNAFPGK+CGS L +IC T EF M++HL
Sbjct: 181 WTTCQSIAAP-SKTSASIGTLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHL 239

Query: 713 FIVACAGAGATVIALIHFLMILSSNWAYLK 802
           FI A  GA AT+++L+ F++  + N+A LK
Sbjct: 240 FIAAFVGAAATLVSLLTFMIAATYNFAVLK 269


  Database: RefSeqBP
    Posted date:  Aug 1, 2006  7:14 PM
  Number of letters in database: 16,112,626
  Number of sequences in database:  33,508
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,817,851
Number of Sequences: 33508
Number of extensions: 1666015
Number of successful extensions: 5470
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 4658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5457
length of database: 16,112,626
effective HSP length: 108
effective length of database: 12,493,762
effective search space used: 7009000482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqCP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= OVRM1_0114_A04
         (2009 letters)

Database: RefSeqCP 
           33,732 sequences; 19,266,565 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_537959.2| PREDICTED: similar to glycoprotein M6B isoform ...   462   e-130
Alignment   gi|XP_858022.1| PREDICTED: similar to glycoprotein M6A isoform ...   334   2e-91
Alignment   gi|XP_858064.1| PREDICTED: similar to glycoprotein M6A isoform ...   329   7e-90
Alignment   gi|XP_858188.1| PREDICTED: similar to glycoprotein M6A isoform ...   316   5e-86
Alignment   gi|XP_858107.1| PREDICTED: similar to glycoprotein M6A isoform ...   315   8e-86
Alignment   gi|XP_858148.1| PREDICTED: similar to glycoprotein M6A isoform ...   314   2e-85
Alignment   gi|XP_532853.2| PREDICTED: similar to glycoprotein M6A isoform ...   312   9e-85
Alignment   gi|NP_001013856.1| proteolipid protein 1 [Canis familiaris]          267   3e-71

>ref|XP_537959.2| PREDICTED: similar to glycoprotein M6B isoform 2 [Canis familiaris]
          Length = 325

 Score =  462 bits (1189), Expect = e-130
 Identities = 222/238 (93%), Positives = 230/238 (96%)
 Frame = +2

Query: 101 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 280
           GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTN SDHALL
Sbjct: 81  GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALL 140

Query: 281 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 460
           SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
Sbjct: 141 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 200

Query: 461 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF 640
           YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQ+NGTAGVEQICVDIRQYGIIPWNAF
Sbjct: 201 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTAGVEQICVDIRQYGIIPWNAF 260

Query: 641 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASK 814
           PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIAL+ ++M  + N+A LK  S+
Sbjct: 261 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSR 318


>ref|XP_858022.1| PREDICTED: similar to glycoprotein M6A isoform 1 isoform 2 [Canis
           familiaris]
          Length = 277

 Score =  334 bits (857), Expect = 2e-91
 Identities = 155/273 (56%), Positives = 209/273 (76%), Gaps = 5/273 (1%)
 Frame = +2

Query: 101 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNTSDHA 274
           GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F  +    D  
Sbjct: 13  GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72

Query: 275 LLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVF 454
            +  +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S  F+ 
Sbjct: 73  DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 132

Query: 455 LTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVE--QICVDIRQYGIIP 628
           LTY+  +AWLGV  F+++PV+M++N+W+ C          T  VE   +C+D+RQ+G   
Sbjct: 133 LTYLFMLAWLGVTAFTSLPVYMYFNLWTICR--------NTTLVEGANLCLDLRQFGRAD 184

Query: 629 WNAFPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDA 808
           WN +PG+ICGS    +C + E  M++HLFIVA AGAGA VIA++H+LM+LS+NWAY+KDA
Sbjct: 185 WNGWPGRICGSNFMRMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANWAYVKDA 244

Query: 809 SKMQAYQDIKAKEEQELQDIQS-RSKEQLNSYT 904
            +MQ Y+DIK+KEEQEL DI S RSKE+LN+YT
Sbjct: 245 CRMQKYEDIKSKEEQELHDIHSTRSKERLNAYT 277


>ref|XP_858064.1| PREDICTED: similar to glycoprotein M6A isoform 1 isoform 3 [Canis
           familiaris]
          Length = 279

 Score =  329 bits (843), Expect = 7e-90
 Identities = 155/275 (56%), Positives = 211/275 (76%), Gaps = 7/275 (2%)
 Frame = +2

Query: 101 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNTSDHA 274
           GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F  +    D  
Sbjct: 13  GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72

Query: 275 LLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVF 454
            +  +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S  F+ 
Sbjct: 73  DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 132

Query: 455 LTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVE--QICVDIRQYGI-- 622
           LTY+  +AWLGV  F+++PV+M++N+W+ C          T  VE   +C+D+RQ+GI  
Sbjct: 133 LTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGIQG 184

Query: 623 IPWNAFPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLK 802
           +PW++ P K C S L+ +C + E  M++HLFIVA AGAGA VIA++H+LM+LS+NWAY+K
Sbjct: 185 MPWDSTPAKWCASKLKVMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANWAYVK 244

Query: 803 DASKMQAYQDIKAKEEQELQDIQS-RSKEQLNSYT 904
           DA +MQ Y+DIK+KEEQEL DI S RSKE+LN+YT
Sbjct: 245 DACRMQKYEDIKSKEEQELHDIHSTRSKERLNAYT 279


>ref|XP_858188.1| PREDICTED: similar to glycoprotein M6A isoform 1 isoform 6 [Canis
           familiaris]
          Length = 281

 Score =  316 bits (810), Expect = 5e-86
 Identities = 156/279 (55%), Positives = 209/279 (74%), Gaps = 11/279 (3%)
 Frame = +2

Query: 101 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFST-----NTS 265
           GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F       +T 
Sbjct: 13  GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72

Query: 266 DHALLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGM 445
           D +L   VI + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S  
Sbjct: 73  DVSLEKNVIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAW 132

Query: 446 FVFLTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVE--QICVDIRQYG 619
           F+ LTY+  +AWLGV  F+++PV+M++N+W+ C          T  VE   +C+D+RQ+G
Sbjct: 133 FIMLTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFG 184

Query: 620 IIPWNAFPGKICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNW 790
           I+       KIC +  EN   +C + E  M++HLFIVA AGAGA VIA++H+LM+LS+NW
Sbjct: 185 IVTIGE-EKKIC-TVSENFMRMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANW 242

Query: 791 AYLKDASKMQAYQDIKAKEEQELQDIQS-RSKEQLNSYT 904
           AY+KDA +MQ Y+DIK+KEEQEL DI S RSKE+LN+YT
Sbjct: 243 AYVKDACRMQKYEDIKSKEEQELHDIHSTRSKERLNAYT 281


>ref|XP_858107.1| PREDICTED: similar to glycoprotein M6A isoform 1 isoform 4 [Canis
           familiaris]
          Length = 287

 Score =  315 bits (808), Expect = 8e-86
 Identities = 151/283 (53%), Positives = 205/283 (72%), Gaps = 15/283 (5%)
 Frame = +2

Query: 101 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNTSDHA 274
           GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F  +    D  
Sbjct: 13  GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72

Query: 275 LLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVF 454
            +  +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S  F+ 
Sbjct: 73  DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 132

Query: 455 LTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVE--QICVDIRQYGIIP 628
           LTY+  +AWLGV  F+++PV+M++N+W+ C          T  VE   +C+D+RQ+G + 
Sbjct: 133 LTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGKLE 184

Query: 629 WNAFPGKICGSALENICNTN----------EFYMSYHLFIVACAGAGATVIALIHFLMIL 778
           W    G  C   L + CN +          +  M++HLFIVA AGAGA VIA++H+LM+L
Sbjct: 185 WRGIQGMPCRPDLSSACNPDTGFDSLLVSLQLNMTFHLFIVALAGAGAAVIAMVHYLMVL 244

Query: 779 SSNWAYLKDASKMQAYQDIKAKEEQELQDIQS-RSKEQLNSYT 904
           S+NWAY+KDA +MQ Y+DIK+KEEQEL DI S RSKE+LN+YT
Sbjct: 245 SANWAYVKDACRMQKYEDIKSKEEQELHDIHSTRSKERLNAYT 287


>ref|XP_858148.1| PREDICTED: similar to glycoprotein M6A isoform 1 isoform 5 [Canis
           familiaris]
          Length = 281

 Score =  314 bits (804), Expect = 2e-85
 Identities = 155/279 (55%), Positives = 208/279 (74%), Gaps = 11/279 (3%)
 Frame = +2

Query: 101 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFST-----NTS 265
           GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F       +T 
Sbjct: 13  GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72

Query: 266 DHALLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGM 445
           D   +  VI + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S  
Sbjct: 73  DVFTIMYVIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAW 132

Query: 446 FVFLTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVE--QICVDIRQYG 619
           F+ LTY+  +AWLGV  F+++PV+M++N+W+ C          T  VE   +C+D+RQ+G
Sbjct: 133 FIMLTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFG 184

Query: 620 IIPWNAFPGKICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNW 790
           I+       KIC +  EN   +C + E  M++HLFIVA AGAGA VIA++H+LM+LS+NW
Sbjct: 185 IVTIGE-EKKIC-TVSENFMRMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANW 242

Query: 791 AYLKDASKMQAYQDIKAKEEQELQDIQS-RSKEQLNSYT 904
           AY+KDA +MQ Y+DIK+KEEQEL DI S RSKE+LN+YT
Sbjct: 243 AYVKDACRMQKYEDIKSKEEQELHDIHSTRSKERLNAYT 281


>ref|XP_532853.2| PREDICTED: similar to glycoprotein M6A isoform 1 isoform 1 [Canis
           familiaris]
          Length = 278

 Score =  312 bits (799), Expect = 9e-85
 Identities = 153/276 (55%), Positives = 207/276 (75%), Gaps = 8/276 (2%)
 Frame = +2

Query: 101 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNTSDHA 274
           GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F  +    D  
Sbjct: 13  GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72

Query: 275 LLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVF 454
            +  +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S  F+ 
Sbjct: 73  DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 132

Query: 455 LTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVE--QICVDIRQYGIIP 628
           LTY+  +AWLGV  F+++PV+M++N+W+ C          T  VE   +C+D+RQ+GI+ 
Sbjct: 133 LTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGIVT 184

Query: 629 WNAFPGKICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYL 799
                 KIC +  EN   +C + E  M++HLFIVA AGAGA VIA++H+LM+LS+NWAY+
Sbjct: 185 IGE-EKKIC-TVSENFMRMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANWAYV 242

Query: 800 KDASKMQAYQDIKAKEEQELQDIQS-RSKEQLNSYT 904
           KDA +MQ Y+DIK+KEEQEL DI S RSKE+LN+YT
Sbjct: 243 KDACRMQKYEDIKSKEEQELHDIHSTRSKERLNAYT 278


>ref|NP_001013856.1| proteolipid protein 1 [Canis familiaris]
          Length = 277

 Score =  267 bits (683), Expect = 3e-71
 Identities = 132/270 (48%), Positives = 171/270 (63%), Gaps = 35/270 (12%)
 Frame = +2

Query: 98  MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL 277
           MG  ECC +CL G P+ASLVAT LCF GVALFCGCGH AL GT  ++E +FS N  D+  
Sbjct: 1   MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60

Query: 278 LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGM---- 445
           L  VI   QYVIYG ASFFFLYG +LLAEGFYTT AV+++ G++KTT CG+ +S      
Sbjct: 61  LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGG 120

Query: 446 -------------------------------FVFLTYVLGVAWLGVFGFSAVPVFMFYNI 532
                                          FV +TY L + WL VF  SAVPV++++N 
Sbjct: 121 QKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTIVWLLVFACSAVPVYIYFNT 180

Query: 533 WSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAFPGKICGSALENICNTNEFYMSYHL 712
           W+TC+ I  P S  +A +  +C D R YG++PWNAFPGK+CGS L +IC T EF M++HL
Sbjct: 181 WTTCQSIAFP-SKTSASIGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHL 239

Query: 713 FIVACAGAGATVIALIHFLMILSSNWAYLK 802
           FI A  GA AT+++L+ F++  + N+A LK
Sbjct: 240 FIAAFVGAAATLVSLLTFMIAATYNFAVLK 269


  Database: RefSeqCP
    Posted date:  Aug 1, 2006  9:25 PM
  Number of letters in database: 19,266,565
  Number of sequences in database:  33,732
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,397,863
Number of Sequences: 33732
Number of extensions: 1958340
Number of successful extensions: 6208
Number of sequences better than 1.0e-05: 8
Number of HSP's better than  0.0 without gapping: 5168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6182
length of database: 19,266,565
effective HSP length: 110
effective length of database: 15,556,045
effective search space used: 8695829155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqHP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= OVRM1_0114_A04
         (2009 letters)

Database: RefSeqHP 
           39,411 sequences; 17,774,539 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001001995.1| glycoprotein M6B isoform 1 [Homo sapiens]         545   e-155
Alignment   gi|NP_001001994.1| glycoprotein M6B isoform 4 [Homo sapiens]         462   e-130
Alignment   gi|NP_005269.1| glycoprotein M6B isoform 3 [Homo sapiens]            461   e-129
Alignment   gi|NP_001001996.1| glycoprotein M6B isoform 2 [Homo sapiens]         461   e-129
Alignment   gi|NP_963886.1| glycoprotein M6A isoform 3 [Homo sapiens]            314   2e-85
Alignment   gi|NP_963885.1| glycoprotein M6A isoform 2 [Homo sapiens]            312   8e-85
Alignment   gi|NP_005268.1| glycoprotein M6A isoform 1 [Homo sapiens]            312   8e-85
Alignment   gi|NP_955772.1| proteolipid protein 1 isoform 2 [Homo sapiens]       285   8e-77
Alignment   gi|NP_000524.3| proteolipid protein 1 isoform 1 [Homo sapiens]       268   2e-71

>ref|NP_001001995.1| glycoprotein M6B isoform 1 [Homo sapiens]
          Length = 328

 Score =  545 bits (1404), Expect = e-155
 Identities = 264/268 (98%), Positives = 266/268 (99%)
 Frame = +2

Query: 101 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 280
           GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTN SDHALL
Sbjct: 61  GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALL 120

Query: 281 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 460
           SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
Sbjct: 121 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 180

Query: 461 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF 640
           YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQ+NGT GVEQICVDIRQYGIIPWNAF
Sbjct: 181 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTTGVEQICVDIRQYGIIPWNAF 240

Query: 641 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASKMQ 820
           PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASKMQ
Sbjct: 241 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASKMQ 300

Query: 821 AYQDIKAKEEQELQDIQSRSKEQLNSYT 904
           AYQDIKAKEEQELQDIQSRSKEQLNSYT
Sbjct: 301 AYQDIKAKEEQELQDIQSRSKEQLNSYT 328


>ref|NP_001001994.1| glycoprotein M6B isoform 4 [Homo sapiens]
          Length = 246

 Score =  462 bits (1190), Expect = e-130
 Identities = 222/239 (92%), Positives = 230/239 (96%)
 Frame = +2

Query: 98  MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL 277
           MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTN SDHAL
Sbjct: 1   MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHAL 60

Query: 278 LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFL 457
           LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFL
Sbjct: 61  LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFL 120

Query: 458 TYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNA 637
           TYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQ+NGT GVEQICVDIRQYGIIPWNA
Sbjct: 121 TYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTTGVEQICVDIRQYGIIPWNA 180

Query: 638 FPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASK 814
           FPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIAL+ ++M  + N+A LK  S+
Sbjct: 181 FPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSR 239


>ref|NP_005269.1| glycoprotein M6B isoform 3 [Homo sapiens]
          Length = 265

 Score =  461 bits (1185), Expect = e-129
 Identities = 221/238 (92%), Positives = 229/238 (96%)
 Frame = +2

Query: 101 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 280
           GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTN SDHALL
Sbjct: 21  GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALL 80

Query: 281 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 460
           SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
Sbjct: 81  SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 140

Query: 461 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF 640
           YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQ+NGT GVEQICVDIRQYGIIPWNAF
Sbjct: 141 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTTGVEQICVDIRQYGIIPWNAF 200

Query: 641 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASK 814
           PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIAL+ ++M  + N+A LK  S+
Sbjct: 201 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSR 258


>ref|NP_001001996.1| glycoprotein M6B isoform 2 [Homo sapiens]
          Length = 305

 Score =  461 bits (1185), Expect = e-129
 Identities = 221/238 (92%), Positives = 229/238 (96%)
 Frame = +2

Query: 101 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 280
           GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTN SDHALL
Sbjct: 61  GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALL 120

Query: 281 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 460
           SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
Sbjct: 121 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 180

Query: 461 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF 640
           YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQ+NGT GVEQICVDIRQYGIIPWNAF
Sbjct: 181 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTTGVEQICVDIRQYGIIPWNAF 240

Query: 641 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASK 814
           PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIAL+ ++M  + N+A LK  S+
Sbjct: 241 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSR 298


>ref|NP_963886.1| glycoprotein M6A isoform 3 [Homo sapiens]
          Length = 267

 Score =  314 bits (804), Expect = 2e-85
 Identities = 154/277 (55%), Positives = 208/277 (75%), Gaps = 8/277 (2%)
 Frame = +2

Query: 98  MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNTSDH 271
           MGCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F  +    D 
Sbjct: 1   MGCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDT 60

Query: 272 ALLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFV 451
             +  +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S  F+
Sbjct: 61  LDVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFI 120

Query: 452 FLTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVE--QICVDIRQYGII 625
            LTY+  +AWLGV  F+++PV+M++N+W+ C          T  VE   +C+D+RQ+GI+
Sbjct: 121 MLTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGIV 172

Query: 626 PWNAFPGKICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAY 796
                  KIC +  EN   +C + E  M++HLFIVA AGAGA VIA++H+LM+LS+NWAY
Sbjct: 173 TIGE-EKKIC-TVSENFLRMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANWAY 230

Query: 797 LKDASKMQAYQDIKAKEEQELQDIQS-RSKEQLNSYT 904
           +KDA +MQ Y+DIK+KEEQEL DI S RSKE+LN+YT
Sbjct: 231 VKDACRMQKYEDIKSKEEQELHDIHSTRSKERLNAYT 267


>ref|NP_963885.1| glycoprotein M6A isoform 2 [Homo sapiens]
          Length = 278

 Score =  312 bits (799), Expect = 8e-85
 Identities = 153/276 (55%), Positives = 207/276 (75%), Gaps = 8/276 (2%)
 Frame = +2

Query: 101 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNTSDHA 274
           GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F  +    D  
Sbjct: 13  GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72

Query: 275 LLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVF 454
            +  +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S  F+ 
Sbjct: 73  DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 132

Query: 455 LTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVE--QICVDIRQYGIIP 628
           LTY+  +AWLGV  F+++PV+M++N+W+ C          T  VE   +C+D+RQ+GI+ 
Sbjct: 133 LTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGIVT 184

Query: 629 WNAFPGKICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYL 799
                 KIC +  EN   +C + E  M++HLFIVA AGAGA VIA++H+LM+LS+NWAY+
Sbjct: 185 IGE-EKKIC-TVSENFLRMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANWAYV 242

Query: 800 KDASKMQAYQDIKAKEEQELQDIQS-RSKEQLNSYT 904
           KDA +MQ Y+DIK+KEEQEL DI S RSKE+LN+YT
Sbjct: 243 KDACRMQKYEDIKSKEEQELHDIHSTRSKERLNAYT 278


>ref|NP_005268.1| glycoprotein M6A isoform 1 [Homo sapiens]
          Length = 278

 Score =  312 bits (799), Expect = 8e-85
 Identities = 153/276 (55%), Positives = 207/276 (75%), Gaps = 8/276 (2%)
 Frame = +2

Query: 101 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNTSDHA 274
           GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F  +    D  
Sbjct: 13  GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72

Query: 275 LLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVF 454
            +  +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S  F+ 
Sbjct: 73  DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 132

Query: 455 LTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVE--QICVDIRQYGIIP 628
           LTY+  +AWLGV  F+++PV+M++N+W+ C          T  VE   +C+D+RQ+GI+ 
Sbjct: 133 LTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGIVT 184

Query: 629 WNAFPGKICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYL 799
                 KIC +  EN   +C + E  M++HLFIVA AGAGA VIA++H+LM+LS+NWAY+
Sbjct: 185 IGE-EKKIC-TVSENFLRMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANWAYV 242

Query: 800 KDASKMQAYQDIKAKEEQELQDIQS-RSKEQLNSYT 904
           KDA +MQ Y+DIK+KEEQEL DI S RSKE+LN+YT
Sbjct: 243 KDACRMQKYEDIKSKEEQELHDIHSTRSKERLNAYT 278


>ref|NP_955772.1| proteolipid protein 1 isoform 2 [Homo sapiens]
          Length = 242

 Score =  285 bits (730), Expect = 8e-77
 Identities = 133/235 (56%), Positives = 171/235 (72%)
 Frame = +2

Query: 98  MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL 277
           MG  ECC +CL G P+ASLVAT LCF GVALFCGCGH AL GT  ++E +FS N  D+  
Sbjct: 1   MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60

Query: 278 LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFL 457
           L  VI   QYVIYG ASFFFLYG +LLAEGFYTT AV+++ G++KTT CG+ +S  FV +
Sbjct: 61  LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATFVGI 120

Query: 458 TYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNA 637
           TY L V WL VF  SAVPV++++N W+TC+ I  P S  +A +  +C D R YG++PWNA
Sbjct: 121 TYALTVVWLLVFACSAVPVYIYFNTWTTCQSIAFP-SKTSASIGSLCADARMYGVLPWNA 179

Query: 638 FPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLK 802
           FPGK+CGS L +IC T EF M++HLFI A  GA AT+++L+ F++  + N+A LK
Sbjct: 180 FPGKVCGSNLLSICKTAEFQMTFHLFIAAFVGAAATLVSLLTFMIAATYNFAVLK 234


>ref|NP_000524.3| proteolipid protein 1 isoform 1 [Homo sapiens]
          Length = 277

 Score =  268 bits (684), Expect = 2e-71
 Identities = 133/270 (49%), Positives = 171/270 (63%), Gaps = 35/270 (12%)
 Frame = +2

Query: 98  MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL 277
           MG  ECC +CL G P+ASLVAT LCF GVALFCGCGH AL GT  ++E +FS N  D+  
Sbjct: 1   MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60

Query: 278 LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGM---- 445
           L  VI   QYVIYG ASFFFLYG +LLAEGFYTT AV+++ G++KTT CG+ +S      
Sbjct: 61  LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGG 120

Query: 446 -------------------------------FVFLTYVLGVAWLGVFGFSAVPVFMFYNI 532
                                          FV +TY L V WL VF  SAVPV++++N 
Sbjct: 121 QKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNT 180

Query: 533 WSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAFPGKICGSALENICNTNEFYMSYHL 712
           W+TC+ I  P S  +A +  +C D R YG++PWNAFPGK+CGS L +IC T EF M++HL
Sbjct: 181 WTTCQSIAFP-SKTSASIGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHL 239

Query: 713 FIVACAGAGATVIALIHFLMILSSNWAYLK 802
           FI A  GA AT+++L+ F++  + N+A LK
Sbjct: 240 FIAAFVGAAATLVSLLTFMIAATYNFAVLK 269


  Database: RefSeqHP
    Posted date:  Aug 2, 2006 12:57 AM
  Number of letters in database: 17,774,539
  Number of sequences in database:  39,411
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,353,664
Number of Sequences: 39411
Number of extensions: 1921252
Number of successful extensions: 6396
Number of sequences better than 1.0e-05: 9
Number of HSP's better than  0.0 without gapping: 5194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6375
length of database: 17,774,539
effective HSP length: 109
effective length of database: 13,478,740
effective search space used: 7548094400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqSP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= OVRM1_0114_A04
         (2009 letters)

Database: RefSeqSP 
           1040 sequences; 434,620 total letters

Searching...done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_999139.1| proteolipid protein, lipophilin [Sus scrofa]         268   5e-73

>ref|NP_999139.1| proteolipid protein, lipophilin [Sus scrofa]
          Length = 277

 Score =  268 bits (684), Expect = 5e-73
 Identities = 133/270 (49%), Positives = 171/270 (63%), Gaps = 35/270 (12%)
 Frame = +2

Query: 98  MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL 277
           MG  ECC +CL G P+ASLVAT LCF GVALFCGCGH AL GT  ++E +FS N  D+  
Sbjct: 1   MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60

Query: 278 LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGM---- 445
           L  VI   QYVIYG ASFFFLYG +LLAEGFYTT AV+++ G++KTT CG+ +S      
Sbjct: 61  LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGG 120

Query: 446 -------------------------------FVFLTYVLGVAWLGVFGFSAVPVFMFYNI 532
                                          FV +TY L V WL VF  SAVPV++++N 
Sbjct: 121 QKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNT 180

Query: 533 WSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAFPGKICGSALENICNTNEFYMSYHL 712
           W+TC+ I  P S  +A +  +C D R YG++PWNAFPGK+CGS L +IC T EF M++HL
Sbjct: 181 WTTCQSIAFP-SKTSASIGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHL 239

Query: 713 FIVACAGAGATVIALIHFLMILSSNWAYLK 802
           FI A  GA AT+++L+ F++  + N+A LK
Sbjct: 240 FIAAFVGAAATLVSLLTFMIAATYNFAVLK 269


  Database: RefSeqSP
    Posted date:  Aug 1, 2006  7:14 PM
  Number of letters in database: 434,620
  Number of sequences in database:  1040
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,789,205
Number of Sequences: 1040
Number of extensions: 44745
Number of successful extensions: 130
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 434,620
effective HSP length: 83
effective length of database: 348,300
effective search space used: 204103800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqMP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= OVRM1_0114_A04
         (2009 letters)

Database: RefSeqMP 
           45,328 sequences; 21,768,885 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_075611.1| glycoprotein m6b [Mus musculus]                      550   e-156
Alignment   gi|NP_705809.1| glycoprotein m6a [Mus musculus]                      314   3e-85
Alignment   gi|NP_035253.1| proteolipid protein 1 [Mus musculus]                 268   2e-71

>ref|NP_075611.1| glycoprotein m6b [Mus musculus]
          Length = 269

 Score =  550 bits (1417), Expect = e-156
 Identities = 266/269 (98%), Positives = 269/269 (100%)
 Frame = +2

Query: 98  MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL 277
           MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL
Sbjct: 1   MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL 60

Query: 278 LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFL 457
           LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFL
Sbjct: 61  LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFL 120

Query: 458 TYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNA 637
           TYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQSNGT+GVEQICVD+RQYGIIPWNA
Sbjct: 121 TYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQSNGTSGVEQICVDVRQYGIIPWNA 180

Query: 638 FPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASKM 817
           FPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASKM
Sbjct: 181 FPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASKM 240

Query: 818 QAYQDIKAKEEQELQDIQSRSKEQLNSYT 904
           QAYQDIKAKEEQELQDIQSRSKEQLNSYT
Sbjct: 241 QAYQDIKAKEEQELQDIQSRSKEQLNSYT 269


>ref|NP_705809.1| glycoprotein m6a [Mus musculus]
          Length = 278

 Score =  314 bits (804), Expect = 3e-85
 Identities = 154/276 (55%), Positives = 208/276 (75%), Gaps = 8/276 (2%)
 Frame = +2

Query: 101 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNTSDHA 274
           GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F  +    D  
Sbjct: 13  GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFELARTAGDTL 72

Query: 275 LLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVF 454
            +  +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S  F+ 
Sbjct: 73  DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 132

Query: 455 LTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVE--QICVDIRQYGIIP 628
           LTY+  +AWLGV  F+++PV+M++N+W+ C          T  VE   +C+D+RQ+GI+ 
Sbjct: 133 LTYLFMLAWLGVTAFTSLPVYMYFNVWTIC--------RNTTLVEGANLCLDLRQFGIVT 184

Query: 629 WNAFPGKICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYL 799
                 KIC +A EN   +C + E  M++HLFIVA AGAGA VIA++H+LM+LS+NWAY+
Sbjct: 185 IGE-EKKIC-TASENFLRMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANWAYV 242

Query: 800 KDASKMQAYQDIKAKEEQELQDIQS-RSKEQLNSYT 904
           KDA +MQ Y+DIK+KEEQEL DI S RSKE+LN+YT
Sbjct: 243 KDACRMQKYEDIKSKEEQELHDIHSTRSKERLNAYT 278


>ref|NP_035253.1| proteolipid protein 1 [Mus musculus]
          Length = 277

 Score =  268 bits (684), Expect = 2e-71
 Identities = 133/270 (49%), Positives = 171/270 (63%), Gaps = 35/270 (12%)
 Frame = +2

Query: 98  MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL 277
           MG  ECC +CL G P+ASLVAT LCF GVALFCGCGH AL GT  ++E +FS N  D+  
Sbjct: 1   MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60

Query: 278 LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGM---- 445
           L  VI   QYVIYG ASFFFLYG +LLAEGFYTT AV+++ G++KTT CG+ +S      
Sbjct: 61  LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGG 120

Query: 446 -------------------------------FVFLTYVLGVAWLGVFGFSAVPVFMFYNI 532
                                          FV +TY L V WL VF  SAVPV++++N 
Sbjct: 121 QKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNT 180

Query: 533 WSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAFPGKICGSALENICNTNEFYMSYHL 712
           W+TC+ I  P S  +A +  +C D R YG++PWNAFPGK+CGS L +IC T EF M++HL
Sbjct: 181 WTTCQSIAFP-SKTSASIGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHL 239

Query: 713 FIVACAGAGATVIALIHFLMILSSNWAYLK 802
           FI A  GA AT+++L+ F++  + N+A LK
Sbjct: 240 FIAAFVGAAATLVSLLTFMIAATYNFAVLK 269


  Database: RefSeqMP
    Posted date:  Aug 2, 2006 12:58 AM
  Number of letters in database: 21,768,885
  Number of sequences in database:  45,328
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,776,198
Number of Sequences: 45328
Number of extensions: 2239531
Number of successful extensions: 7292
Number of sequences better than 1.0e-05: 3
Number of HSP's better than  0.0 without gapping: 5980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7267
length of database: 21,768,885
effective HSP length: 110
effective length of database: 16,782,805
effective search space used: 9381587995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)