Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0114_A04
(2009 letters)
Database: RefSeqBP
33,508 sequences; 16,112,626 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_878222.1| PREDICTED: similar to Neuronal membrane glycopr... 547 e-155
Alignment gi|XP_869276.1| PREDICTED: similar to Neuronal membrane glycopr... 547 e-155
Alignment gi|XP_877931.1| PREDICTED: similar to Neuronal membrane glycopr... 540 e-153
Alignment gi|XP_877839.1| PREDICTED: similar to Neuronal membrane glycopr... 535 e-152
Alignment gi|XP_878028.1| PREDICTED: similar to Neuronal membrane glycopr... 505 e-143
Alignment gi|XP_594847.2| PREDICTED: similar to Neuronal membrane glycopr... 481 e-135
Alignment gi|XP_878121.1| PREDICTED: similar to glycoprotein M6B isoform ... 463 e-130
Alignment gi|XP_877728.1| PREDICTED: similar to Neuronal membrane glycopr... 327 2e-89
Alignment gi|XP_583987.2| PREDICTED: similar to glycoprotein M6A isoform ... 310 3e-84
Alignment gi|NP_776574.2| proteolipid protein 1 [Bos taurus] 270 4e-72
>ref|XP_878222.1| PREDICTED: similar to Neuronal membrane glycoprotein M6-b (M6b)
isoform 8 [Bos taurus]
Length = 284
Score = 547 bits (1410), Expect = e-155
Identities = 265/268 (98%), Positives = 268/268 (100%)
Frame = +2
Query: 101 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 280
GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL
Sbjct: 17 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 76
Query: 281 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 460
SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
Sbjct: 77 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 136
Query: 461 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF 640
YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQ+NGTAGVEQICVDIRQYGIIPWNAF
Sbjct: 137 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTAGVEQICVDIRQYGIIPWNAF 196
Query: 641 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASKMQ 820
PG+ICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASKMQ
Sbjct: 197 PGRICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASKMQ 256
Query: 821 AYQDIKAKEEQELQDIQSRSKEQLNSYT 904
AYQDIKAKEEQELQDIQSRSKEQLNSYT
Sbjct: 257 AYQDIKAKEEQELQDIQSRSKEQLNSYT 284
>ref|XP_869276.1| PREDICTED: similar to Neuronal membrane glycoprotein M6-b (M6b)
isoform 2 [Bos taurus]
Length = 324
Score = 547 bits (1410), Expect = e-155
Identities = 265/268 (98%), Positives = 268/268 (100%)
Frame = +2
Query: 101 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 280
GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL
Sbjct: 57 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 116
Query: 281 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 460
SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
Sbjct: 117 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 176
Query: 461 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF 640
YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQ+NGTAGVEQICVDIRQYGIIPWNAF
Sbjct: 177 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTAGVEQICVDIRQYGIIPWNAF 236
Query: 641 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASKMQ 820
PG+ICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASKMQ
Sbjct: 237 PGRICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASKMQ 296
Query: 821 AYQDIKAKEEQELQDIQSRSKEQLNSYT 904
AYQDIKAKEEQELQDIQSRSKEQLNSYT
Sbjct: 297 AYQDIKAKEEQELQDIQSRSKEQLNSYT 324
>ref|XP_877931.1| PREDICTED: similar to Neuronal membrane glycoprotein M6-b (M6b)
isoform 5 [Bos taurus]
Length = 326
Score = 540 bits (1390), Expect = e-153
Identities = 263/270 (97%), Positives = 267/270 (98%), Gaps = 2/270 (0%)
Frame = +2
Query: 101 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 280
GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL
Sbjct: 57 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 116
Query: 281 SEV--IQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVF 454
SEV + LMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVF
Sbjct: 117 SEVTKLDLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVF 176
Query: 455 LTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWN 634
LTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQ+NGTAGVEQICVDIRQYGIIPWN
Sbjct: 177 LTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTAGVEQICVDIRQYGIIPWN 236
Query: 635 AFPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASK 814
AFPG+ICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASK
Sbjct: 237 AFPGRICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASK 296
Query: 815 MQAYQDIKAKEEQELQDIQSRSKEQLNSYT 904
MQAYQDIKAKEEQELQDIQSRSKEQLNSYT
Sbjct: 297 MQAYQDIKAKEEQELQDIQSRSKEQLNSYT 326
>ref|XP_877839.1| PREDICTED: similar to Neuronal membrane glycoprotein M6-b (M6b)
isoform 4 [Bos taurus]
Length = 334
Score = 535 bits (1378), Expect = e-152
Identities = 263/278 (94%), Positives = 266/278 (95%), Gaps = 10/278 (3%)
Frame = +2
Query: 101 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 280
GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL
Sbjct: 57 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 116
Query: 281 SEV----------IQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGR 430
S IQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGR
Sbjct: 117 SRKCNHLGSSFHRIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGR 176
Query: 431 CISGMFVFLTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIR 610
CISGMFVFLTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQ+NGTAGVEQICVDIR
Sbjct: 177 CISGMFVFLTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTAGVEQICVDIR 236
Query: 611 QYGIIPWNAFPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNW 790
QYGIIPWNAFPG+ICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNW
Sbjct: 237 QYGIIPWNAFPGRICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNW 296
Query: 791 AYLKDASKMQAYQDIKAKEEQELQDIQSRSKEQLNSYT 904
AYLKDASKMQAYQDIKAKEEQELQDIQSRSKEQLNSYT
Sbjct: 297 AYLKDASKMQAYQDIKAKEEQELQDIQSRSKEQLNSYT 334
>ref|XP_878028.1| PREDICTED: similar to Neuronal membrane glycoprotein M6-b (M6b)
isoform 6 [Bos taurus]
Length = 314
Score = 505 bits (1300), Expect = e-143
Identities = 250/268 (93%), Positives = 253/268 (94%)
Frame = +2
Query: 101 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 280
GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL
Sbjct: 57 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 116
Query: 281 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 460
SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
Sbjct: 117 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 176
Query: 461 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF 640
YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQ+NGTAGVEQICVDIRQYGIIPWNAF
Sbjct: 177 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTAGVEQICVDIRQYGIIPWNAF 236
Query: 641 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASKMQ 820
PG+ICGSALENICNTNE GATVIALIHFLMILSSNWAYLKDASKMQ
Sbjct: 237 PGRICGSALENICNTNERKRE----------PGATVIALIHFLMILSSNWAYLKDASKMQ 286
Query: 821 AYQDIKAKEEQELQDIQSRSKEQLNSYT 904
AYQDIKAKEEQELQDIQSRSKEQLNSYT
Sbjct: 287 AYQDIKAKEEQELQDIQSRSKEQLNSYT 314
>ref|XP_594847.2| PREDICTED: similar to Neuronal membrane glycoprotein M6-b (M6b)
isoform 1 [Bos taurus]
Length = 297
Score = 481 bits (1237), Expect = e-135
Identities = 237/268 (88%), Positives = 241/268 (89%)
Frame = +2
Query: 101 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 280
GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL
Sbjct: 57 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 116
Query: 281 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 460
+GFYTTSAVKELHGEFKTTACGRCISGMFVFLT
Sbjct: 117 ---------------------------KGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 149
Query: 461 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF 640
YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQ+NGTAGVEQICVDIRQYGIIPWNAF
Sbjct: 150 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTAGVEQICVDIRQYGIIPWNAF 209
Query: 641 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASKMQ 820
PG+ICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASKMQ
Sbjct: 210 PGRICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASKMQ 269
Query: 821 AYQDIKAKEEQELQDIQSRSKEQLNSYT 904
AYQDIKAKEEQELQDIQSRSKEQLNSYT
Sbjct: 270 AYQDIKAKEEQELQDIQSRSKEQLNSYT 297
>ref|XP_878121.1| PREDICTED: similar to glycoprotein M6B isoform 2 isoform 7 [Bos
taurus]
Length = 301
Score = 463 bits (1191), Expect = e-130
Identities = 222/238 (93%), Positives = 231/238 (97%)
Frame = +2
Query: 101 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 280
GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL
Sbjct: 57 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 116
Query: 281 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 460
SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
Sbjct: 117 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 176
Query: 461 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF 640
YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQ+NGTAGVEQICVDIRQYGIIPWNAF
Sbjct: 177 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTAGVEQICVDIRQYGIIPWNAF 236
Query: 641 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASK 814
PG+ICGSALENICNTNEFYMSYHLFIVACAGAGATVIAL+ ++M + N+A LK S+
Sbjct: 237 PGRICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSR 294
>ref|XP_877728.1| PREDICTED: similar to Neuronal membrane glycoprotein M6-b (M6b)
isoform 3 [Bos taurus]
Length = 179
Score = 327 bits (838), Expect = 2e-89
Identities = 156/172 (90%), Positives = 165/172 (95%)
Frame = +2
Query: 299 MQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLTYVLGVA 478
MQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLTYVLGVA
Sbjct: 1 MQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLTYVLGVA 60
Query: 479 WLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAFPGKICG 658
WLGVFGFSAVPVFMFYNIWSTCEVIK+PQ+NGTAGVEQICVDIRQYGIIPWNAFPG+ICG
Sbjct: 61 WLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTAGVEQICVDIRQYGIIPWNAFPGRICG 120
Query: 659 SALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASK 814
SALENICNTNEFYMSYHLFIVACAGAGATVIAL+ ++M + N+A LK S+
Sbjct: 121 SALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSR 172
>ref|XP_583987.2| PREDICTED: similar to glycoprotein M6A isoform 1, partial [Bos
taurus]
Length = 268
Score = 310 bits (794), Expect = 3e-84
Identities = 153/278 (55%), Positives = 207/278 (74%), Gaps = 11/278 (3%)
Frame = +2
Query: 104 CFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFST-----NTSD 268
CFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F +T D
Sbjct: 1 CFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTLD 60
Query: 269 HALLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMF 448
+ +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S F
Sbjct: 61 VFTMVYMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWF 120
Query: 449 VFLTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVE--QICVDIRQYGI 622
+ LTY+ +AWLGV F+++PV+M++N+W+ C T VE +C+D+RQ+GI
Sbjct: 121 IMLTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGI 172
Query: 623 IPWNAFPGKICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWA 793
+ KIC + EN +C + E M++HLFIVA AGAGA VIA++H+LM+LS+NWA
Sbjct: 173 VTIGE-EKKIC-TVSENFLRMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANWA 230
Query: 794 YLKDASKMQAYQDIKAKEEQELQDIQS-RSKEQLNSYT 904
Y+KDA +MQ Y+DIK+KEEQEL DI S RSKE+LN+YT
Sbjct: 231 YVKDACRMQKYEDIKSKEEQELHDIHSTRSKERLNAYT 268
>ref|NP_776574.2| proteolipid protein 1 [Bos taurus]
Length = 277
Score = 270 bits (689), Expect = 4e-72
Identities = 134/270 (49%), Positives = 172/270 (63%), Gaps = 35/270 (12%)
Frame = +2
Query: 98 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL 277
MG ECC +CL G P+ASLVAT LCF GVALFCGCGH AL GT ++E +FS N D+
Sbjct: 1 MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60
Query: 278 LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGM---- 445
L VI QYVIYG ASFFFLYG +LLAEGFYTT AV+++ G++KTT CG+ +S
Sbjct: 61 LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGG 120
Query: 446 -------------------------------FVFLTYVLGVAWLGVFGFSAVPVFMFYNI 532
FV +TY L V WL VF SAVPV++++N
Sbjct: 121 QKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNT 180
Query: 533 WSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAFPGKICGSALENICNTNEFYMSYHL 712
W+TC+ I AP S +A + +C D R YG++PWNAFPGK+CGS L +IC T EF M++HL
Sbjct: 181 WTTCQSIAAP-SKTSASIGTLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHL 239
Query: 713 FIVACAGAGATVIALIHFLMILSSNWAYLK 802
FI A GA AT+++L+ F++ + N+A LK
Sbjct: 240 FIAAFVGAAATLVSLLTFMIAATYNFAVLK 269
Database: RefSeqBP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 16,112,626
Number of sequences in database: 33,508
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,817,851
Number of Sequences: 33508
Number of extensions: 1666015
Number of successful extensions: 5470
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 4658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5457
length of database: 16,112,626
effective HSP length: 108
effective length of database: 12,493,762
effective search space used: 7009000482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0114_A04
(2009 letters)
Database: RefSeqCP
33,732 sequences; 19,266,565 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537959.2| PREDICTED: similar to glycoprotein M6B isoform ... 462 e-130
Alignment gi|XP_858022.1| PREDICTED: similar to glycoprotein M6A isoform ... 334 2e-91
Alignment gi|XP_858064.1| PREDICTED: similar to glycoprotein M6A isoform ... 329 7e-90
Alignment gi|XP_858188.1| PREDICTED: similar to glycoprotein M6A isoform ... 316 5e-86
Alignment gi|XP_858107.1| PREDICTED: similar to glycoprotein M6A isoform ... 315 8e-86
Alignment gi|XP_858148.1| PREDICTED: similar to glycoprotein M6A isoform ... 314 2e-85
Alignment gi|XP_532853.2| PREDICTED: similar to glycoprotein M6A isoform ... 312 9e-85
Alignment gi|NP_001013856.1| proteolipid protein 1 [Canis familiaris] 267 3e-71
>ref|XP_537959.2| PREDICTED: similar to glycoprotein M6B isoform 2 [Canis familiaris]
Length = 325
Score = 462 bits (1189), Expect = e-130
Identities = 222/238 (93%), Positives = 230/238 (96%)
Frame = +2
Query: 101 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 280
GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTN SDHALL
Sbjct: 81 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALL 140
Query: 281 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 460
SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
Sbjct: 141 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 200
Query: 461 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF 640
YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQ+NGTAGVEQICVDIRQYGIIPWNAF
Sbjct: 201 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTAGVEQICVDIRQYGIIPWNAF 260
Query: 641 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASK 814
PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIAL+ ++M + N+A LK S+
Sbjct: 261 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSR 318
>ref|XP_858022.1| PREDICTED: similar to glycoprotein M6A isoform 1 isoform 2 [Canis
familiaris]
Length = 277
Score = 334 bits (857), Expect = 2e-91
Identities = 155/273 (56%), Positives = 209/273 (76%), Gaps = 5/273 (1%)
Frame = +2
Query: 101 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNTSDHA 274
GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F + D
Sbjct: 13 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72
Query: 275 LLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVF 454
+ +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S F+
Sbjct: 73 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 132
Query: 455 LTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVE--QICVDIRQYGIIP 628
LTY+ +AWLGV F+++PV+M++N+W+ C T VE +C+D+RQ+G
Sbjct: 133 LTYLFMLAWLGVTAFTSLPVYMYFNLWTICR--------NTTLVEGANLCLDLRQFGRAD 184
Query: 629 WNAFPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDA 808
WN +PG+ICGS +C + E M++HLFIVA AGAGA VIA++H+LM+LS+NWAY+KDA
Sbjct: 185 WNGWPGRICGSNFMRMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANWAYVKDA 244
Query: 809 SKMQAYQDIKAKEEQELQDIQS-RSKEQLNSYT 904
+MQ Y+DIK+KEEQEL DI S RSKE+LN+YT
Sbjct: 245 CRMQKYEDIKSKEEQELHDIHSTRSKERLNAYT 277
>ref|XP_858064.1| PREDICTED: similar to glycoprotein M6A isoform 1 isoform 3 [Canis
familiaris]
Length = 279
Score = 329 bits (843), Expect = 7e-90
Identities = 155/275 (56%), Positives = 211/275 (76%), Gaps = 7/275 (2%)
Frame = +2
Query: 101 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNTSDHA 274
GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F + D
Sbjct: 13 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72
Query: 275 LLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVF 454
+ +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S F+
Sbjct: 73 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 132
Query: 455 LTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVE--QICVDIRQYGI-- 622
LTY+ +AWLGV F+++PV+M++N+W+ C T VE +C+D+RQ+GI
Sbjct: 133 LTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGIQG 184
Query: 623 IPWNAFPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLK 802
+PW++ P K C S L+ +C + E M++HLFIVA AGAGA VIA++H+LM+LS+NWAY+K
Sbjct: 185 MPWDSTPAKWCASKLKVMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANWAYVK 244
Query: 803 DASKMQAYQDIKAKEEQELQDIQS-RSKEQLNSYT 904
DA +MQ Y+DIK+KEEQEL DI S RSKE+LN+YT
Sbjct: 245 DACRMQKYEDIKSKEEQELHDIHSTRSKERLNAYT 279
>ref|XP_858188.1| PREDICTED: similar to glycoprotein M6A isoform 1 isoform 6 [Canis
familiaris]
Length = 281
Score = 316 bits (810), Expect = 5e-86
Identities = 156/279 (55%), Positives = 209/279 (74%), Gaps = 11/279 (3%)
Frame = +2
Query: 101 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFST-----NTS 265
GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F +T
Sbjct: 13 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72
Query: 266 DHALLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGM 445
D +L VI + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S
Sbjct: 73 DVSLEKNVIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAW 132
Query: 446 FVFLTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVE--QICVDIRQYG 619
F+ LTY+ +AWLGV F+++PV+M++N+W+ C T VE +C+D+RQ+G
Sbjct: 133 FIMLTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFG 184
Query: 620 IIPWNAFPGKICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNW 790
I+ KIC + EN +C + E M++HLFIVA AGAGA VIA++H+LM+LS+NW
Sbjct: 185 IVTIGE-EKKIC-TVSENFMRMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANW 242
Query: 791 AYLKDASKMQAYQDIKAKEEQELQDIQS-RSKEQLNSYT 904
AY+KDA +MQ Y+DIK+KEEQEL DI S RSKE+LN+YT
Sbjct: 243 AYVKDACRMQKYEDIKSKEEQELHDIHSTRSKERLNAYT 281
>ref|XP_858107.1| PREDICTED: similar to glycoprotein M6A isoform 1 isoform 4 [Canis
familiaris]
Length = 287
Score = 315 bits (808), Expect = 8e-86
Identities = 151/283 (53%), Positives = 205/283 (72%), Gaps = 15/283 (5%)
Frame = +2
Query: 101 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNTSDHA 274
GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F + D
Sbjct: 13 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72
Query: 275 LLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVF 454
+ +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S F+
Sbjct: 73 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 132
Query: 455 LTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVE--QICVDIRQYGIIP 628
LTY+ +AWLGV F+++PV+M++N+W+ C T VE +C+D+RQ+G +
Sbjct: 133 LTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGKLE 184
Query: 629 WNAFPGKICGSALENICNTN----------EFYMSYHLFIVACAGAGATVIALIHFLMIL 778
W G C L + CN + + M++HLFIVA AGAGA VIA++H+LM+L
Sbjct: 185 WRGIQGMPCRPDLSSACNPDTGFDSLLVSLQLNMTFHLFIVALAGAGAAVIAMVHYLMVL 244
Query: 779 SSNWAYLKDASKMQAYQDIKAKEEQELQDIQS-RSKEQLNSYT 904
S+NWAY+KDA +MQ Y+DIK+KEEQEL DI S RSKE+LN+YT
Sbjct: 245 SANWAYVKDACRMQKYEDIKSKEEQELHDIHSTRSKERLNAYT 287
>ref|XP_858148.1| PREDICTED: similar to glycoprotein M6A isoform 1 isoform 5 [Canis
familiaris]
Length = 281
Score = 314 bits (804), Expect = 2e-85
Identities = 155/279 (55%), Positives = 208/279 (74%), Gaps = 11/279 (3%)
Frame = +2
Query: 101 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFST-----NTS 265
GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F +T
Sbjct: 13 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72
Query: 266 DHALLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGM 445
D + VI + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S
Sbjct: 73 DVFTIMYVIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAW 132
Query: 446 FVFLTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVE--QICVDIRQYG 619
F+ LTY+ +AWLGV F+++PV+M++N+W+ C T VE +C+D+RQ+G
Sbjct: 133 FIMLTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFG 184
Query: 620 IIPWNAFPGKICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNW 790
I+ KIC + EN +C + E M++HLFIVA AGAGA VIA++H+LM+LS+NW
Sbjct: 185 IVTIGE-EKKIC-TVSENFMRMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANW 242
Query: 791 AYLKDASKMQAYQDIKAKEEQELQDIQS-RSKEQLNSYT 904
AY+KDA +MQ Y+DIK+KEEQEL DI S RSKE+LN+YT
Sbjct: 243 AYVKDACRMQKYEDIKSKEEQELHDIHSTRSKERLNAYT 281
>ref|XP_532853.2| PREDICTED: similar to glycoprotein M6A isoform 1 isoform 1 [Canis
familiaris]
Length = 278
Score = 312 bits (799), Expect = 9e-85
Identities = 153/276 (55%), Positives = 207/276 (75%), Gaps = 8/276 (2%)
Frame = +2
Query: 101 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNTSDHA 274
GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F + D
Sbjct: 13 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72
Query: 275 LLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVF 454
+ +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S F+
Sbjct: 73 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 132
Query: 455 LTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVE--QICVDIRQYGIIP 628
LTY+ +AWLGV F+++PV+M++N+W+ C T VE +C+D+RQ+GI+
Sbjct: 133 LTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGIVT 184
Query: 629 WNAFPGKICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYL 799
KIC + EN +C + E M++HLFIVA AGAGA VIA++H+LM+LS+NWAY+
Sbjct: 185 IGE-EKKIC-TVSENFMRMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANWAYV 242
Query: 800 KDASKMQAYQDIKAKEEQELQDIQS-RSKEQLNSYT 904
KDA +MQ Y+DIK+KEEQEL DI S RSKE+LN+YT
Sbjct: 243 KDACRMQKYEDIKSKEEQELHDIHSTRSKERLNAYT 278
>ref|NP_001013856.1| proteolipid protein 1 [Canis familiaris]
Length = 277
Score = 267 bits (683), Expect = 3e-71
Identities = 132/270 (48%), Positives = 171/270 (63%), Gaps = 35/270 (12%)
Frame = +2
Query: 98 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL 277
MG ECC +CL G P+ASLVAT LCF GVALFCGCGH AL GT ++E +FS N D+
Sbjct: 1 MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60
Query: 278 LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGM---- 445
L VI QYVIYG ASFFFLYG +LLAEGFYTT AV+++ G++KTT CG+ +S
Sbjct: 61 LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGG 120
Query: 446 -------------------------------FVFLTYVLGVAWLGVFGFSAVPVFMFYNI 532
FV +TY L + WL VF SAVPV++++N
Sbjct: 121 QKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTIVWLLVFACSAVPVYIYFNT 180
Query: 533 WSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAFPGKICGSALENICNTNEFYMSYHL 712
W+TC+ I P S +A + +C D R YG++PWNAFPGK+CGS L +IC T EF M++HL
Sbjct: 181 WTTCQSIAFP-SKTSASIGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHL 239
Query: 713 FIVACAGAGATVIALIHFLMILSSNWAYLK 802
FI A GA AT+++L+ F++ + N+A LK
Sbjct: 240 FIAAFVGAAATLVSLLTFMIAATYNFAVLK 269
Database: RefSeqCP
Posted date: Aug 1, 2006 9:25 PM
Number of letters in database: 19,266,565
Number of sequences in database: 33,732
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,397,863
Number of Sequences: 33732
Number of extensions: 1958340
Number of successful extensions: 6208
Number of sequences better than 1.0e-05: 8
Number of HSP's better than 0.0 without gapping: 5168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6182
length of database: 19,266,565
effective HSP length: 110
effective length of database: 15,556,045
effective search space used: 8695829155
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0114_A04
(2009 letters)
Database: RefSeqHP
39,411 sequences; 17,774,539 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001001995.1| glycoprotein M6B isoform 1 [Homo sapiens] 545 e-155
Alignment gi|NP_001001994.1| glycoprotein M6B isoform 4 [Homo sapiens] 462 e-130
Alignment gi|NP_005269.1| glycoprotein M6B isoform 3 [Homo sapiens] 461 e-129
Alignment gi|NP_001001996.1| glycoprotein M6B isoform 2 [Homo sapiens] 461 e-129
Alignment gi|NP_963886.1| glycoprotein M6A isoform 3 [Homo sapiens] 314 2e-85
Alignment gi|NP_963885.1| glycoprotein M6A isoform 2 [Homo sapiens] 312 8e-85
Alignment gi|NP_005268.1| glycoprotein M6A isoform 1 [Homo sapiens] 312 8e-85
Alignment gi|NP_955772.1| proteolipid protein 1 isoform 2 [Homo sapiens] 285 8e-77
Alignment gi|NP_000524.3| proteolipid protein 1 isoform 1 [Homo sapiens] 268 2e-71
>ref|NP_001001995.1| glycoprotein M6B isoform 1 [Homo sapiens]
Length = 328
Score = 545 bits (1404), Expect = e-155
Identities = 264/268 (98%), Positives = 266/268 (99%)
Frame = +2
Query: 101 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 280
GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTN SDHALL
Sbjct: 61 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALL 120
Query: 281 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 460
SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
Sbjct: 121 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 180
Query: 461 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF 640
YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQ+NGT GVEQICVDIRQYGIIPWNAF
Sbjct: 181 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTTGVEQICVDIRQYGIIPWNAF 240
Query: 641 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASKMQ 820
PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASKMQ
Sbjct: 241 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASKMQ 300
Query: 821 AYQDIKAKEEQELQDIQSRSKEQLNSYT 904
AYQDIKAKEEQELQDIQSRSKEQLNSYT
Sbjct: 301 AYQDIKAKEEQELQDIQSRSKEQLNSYT 328
>ref|NP_001001994.1| glycoprotein M6B isoform 4 [Homo sapiens]
Length = 246
Score = 462 bits (1190), Expect = e-130
Identities = 222/239 (92%), Positives = 230/239 (96%)
Frame = +2
Query: 98 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL 277
MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTN SDHAL
Sbjct: 1 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHAL 60
Query: 278 LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFL 457
LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFL
Sbjct: 61 LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFL 120
Query: 458 TYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNA 637
TYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQ+NGT GVEQICVDIRQYGIIPWNA
Sbjct: 121 TYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTTGVEQICVDIRQYGIIPWNA 180
Query: 638 FPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASK 814
FPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIAL+ ++M + N+A LK S+
Sbjct: 181 FPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSR 239
>ref|NP_005269.1| glycoprotein M6B isoform 3 [Homo sapiens]
Length = 265
Score = 461 bits (1185), Expect = e-129
Identities = 221/238 (92%), Positives = 229/238 (96%)
Frame = +2
Query: 101 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 280
GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTN SDHALL
Sbjct: 21 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALL 80
Query: 281 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 460
SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
Sbjct: 81 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 140
Query: 461 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF 640
YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQ+NGT GVEQICVDIRQYGIIPWNAF
Sbjct: 141 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTTGVEQICVDIRQYGIIPWNAF 200
Query: 641 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASK 814
PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIAL+ ++M + N+A LK S+
Sbjct: 201 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSR 258
>ref|NP_001001996.1| glycoprotein M6B isoform 2 [Homo sapiens]
Length = 305
Score = 461 bits (1185), Expect = e-129
Identities = 221/238 (92%), Positives = 229/238 (96%)
Frame = +2
Query: 101 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 280
GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTN SDHALL
Sbjct: 61 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALL 120
Query: 281 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 460
SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
Sbjct: 121 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 180
Query: 461 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF 640
YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQ+NGT GVEQICVDIRQYGIIPWNAF
Sbjct: 181 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTTGVEQICVDIRQYGIIPWNAF 240
Query: 641 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASK 814
PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIAL+ ++M + N+A LK S+
Sbjct: 241 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSR 298
>ref|NP_963886.1| glycoprotein M6A isoform 3 [Homo sapiens]
Length = 267
Score = 314 bits (804), Expect = 2e-85
Identities = 154/277 (55%), Positives = 208/277 (75%), Gaps = 8/277 (2%)
Frame = +2
Query: 98 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNTSDH 271
MGCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F + D
Sbjct: 1 MGCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDT 60
Query: 272 ALLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFV 451
+ +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S F+
Sbjct: 61 LDVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFI 120
Query: 452 FLTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVE--QICVDIRQYGII 625
LTY+ +AWLGV F+++PV+M++N+W+ C T VE +C+D+RQ+GI+
Sbjct: 121 MLTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGIV 172
Query: 626 PWNAFPGKICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAY 796
KIC + EN +C + E M++HLFIVA AGAGA VIA++H+LM+LS+NWAY
Sbjct: 173 TIGE-EKKIC-TVSENFLRMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANWAY 230
Query: 797 LKDASKMQAYQDIKAKEEQELQDIQS-RSKEQLNSYT 904
+KDA +MQ Y+DIK+KEEQEL DI S RSKE+LN+YT
Sbjct: 231 VKDACRMQKYEDIKSKEEQELHDIHSTRSKERLNAYT 267
>ref|NP_963885.1| glycoprotein M6A isoform 2 [Homo sapiens]
Length = 278
Score = 312 bits (799), Expect = 8e-85
Identities = 153/276 (55%), Positives = 207/276 (75%), Gaps = 8/276 (2%)
Frame = +2
Query: 101 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNTSDHA 274
GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F + D
Sbjct: 13 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72
Query: 275 LLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVF 454
+ +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S F+
Sbjct: 73 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 132
Query: 455 LTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVE--QICVDIRQYGIIP 628
LTY+ +AWLGV F+++PV+M++N+W+ C T VE +C+D+RQ+GI+
Sbjct: 133 LTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGIVT 184
Query: 629 WNAFPGKICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYL 799
KIC + EN +C + E M++HLFIVA AGAGA VIA++H+LM+LS+NWAY+
Sbjct: 185 IGE-EKKIC-TVSENFLRMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANWAYV 242
Query: 800 KDASKMQAYQDIKAKEEQELQDIQS-RSKEQLNSYT 904
KDA +MQ Y+DIK+KEEQEL DI S RSKE+LN+YT
Sbjct: 243 KDACRMQKYEDIKSKEEQELHDIHSTRSKERLNAYT 278
>ref|NP_005268.1| glycoprotein M6A isoform 1 [Homo sapiens]
Length = 278
Score = 312 bits (799), Expect = 8e-85
Identities = 153/276 (55%), Positives = 207/276 (75%), Gaps = 8/276 (2%)
Frame = +2
Query: 101 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNTSDHA 274
GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F + D
Sbjct: 13 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72
Query: 275 LLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVF 454
+ +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S F+
Sbjct: 73 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 132
Query: 455 LTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVE--QICVDIRQYGIIP 628
LTY+ +AWLGV F+++PV+M++N+W+ C T VE +C+D+RQ+GI+
Sbjct: 133 LTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGIVT 184
Query: 629 WNAFPGKICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYL 799
KIC + EN +C + E M++HLFIVA AGAGA VIA++H+LM+LS+NWAY+
Sbjct: 185 IGE-EKKIC-TVSENFLRMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANWAYV 242
Query: 800 KDASKMQAYQDIKAKEEQELQDIQS-RSKEQLNSYT 904
KDA +MQ Y+DIK+KEEQEL DI S RSKE+LN+YT
Sbjct: 243 KDACRMQKYEDIKSKEEQELHDIHSTRSKERLNAYT 278
>ref|NP_955772.1| proteolipid protein 1 isoform 2 [Homo sapiens]
Length = 242
Score = 285 bits (730), Expect = 8e-77
Identities = 133/235 (56%), Positives = 171/235 (72%)
Frame = +2
Query: 98 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL 277
MG ECC +CL G P+ASLVAT LCF GVALFCGCGH AL GT ++E +FS N D+
Sbjct: 1 MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60
Query: 278 LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFL 457
L VI QYVIYG ASFFFLYG +LLAEGFYTT AV+++ G++KTT CG+ +S FV +
Sbjct: 61 LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATFVGI 120
Query: 458 TYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNA 637
TY L V WL VF SAVPV++++N W+TC+ I P S +A + +C D R YG++PWNA
Sbjct: 121 TYALTVVWLLVFACSAVPVYIYFNTWTTCQSIAFP-SKTSASIGSLCADARMYGVLPWNA 179
Query: 638 FPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLK 802
FPGK+CGS L +IC T EF M++HLFI A GA AT+++L+ F++ + N+A LK
Sbjct: 180 FPGKVCGSNLLSICKTAEFQMTFHLFIAAFVGAAATLVSLLTFMIAATYNFAVLK 234
>ref|NP_000524.3| proteolipid protein 1 isoform 1 [Homo sapiens]
Length = 277
Score = 268 bits (684), Expect = 2e-71
Identities = 133/270 (49%), Positives = 171/270 (63%), Gaps = 35/270 (12%)
Frame = +2
Query: 98 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL 277
MG ECC +CL G P+ASLVAT LCF GVALFCGCGH AL GT ++E +FS N D+
Sbjct: 1 MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60
Query: 278 LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGM---- 445
L VI QYVIYG ASFFFLYG +LLAEGFYTT AV+++ G++KTT CG+ +S
Sbjct: 61 LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGG 120
Query: 446 -------------------------------FVFLTYVLGVAWLGVFGFSAVPVFMFYNI 532
FV +TY L V WL VF SAVPV++++N
Sbjct: 121 QKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNT 180
Query: 533 WSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAFPGKICGSALENICNTNEFYMSYHL 712
W+TC+ I P S +A + +C D R YG++PWNAFPGK+CGS L +IC T EF M++HL
Sbjct: 181 WTTCQSIAFP-SKTSASIGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHL 239
Query: 713 FIVACAGAGATVIALIHFLMILSSNWAYLK 802
FI A GA AT+++L+ F++ + N+A LK
Sbjct: 240 FIAAFVGAAATLVSLLTFMIAATYNFAVLK 269
Database: RefSeqHP
Posted date: Aug 2, 2006 12:57 AM
Number of letters in database: 17,774,539
Number of sequences in database: 39,411
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,353,664
Number of Sequences: 39411
Number of extensions: 1921252
Number of successful extensions: 6396
Number of sequences better than 1.0e-05: 9
Number of HSP's better than 0.0 without gapping: 5194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6375
length of database: 17,774,539
effective HSP length: 109
effective length of database: 13,478,740
effective search space used: 7548094400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqSP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0114_A04
(2009 letters)
Database: RefSeqSP
1040 sequences; 434,620 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999139.1| proteolipid protein, lipophilin [Sus scrofa] 268 5e-73
>ref|NP_999139.1| proteolipid protein, lipophilin [Sus scrofa]
Length = 277
Score = 268 bits (684), Expect = 5e-73
Identities = 133/270 (49%), Positives = 171/270 (63%), Gaps = 35/270 (12%)
Frame = +2
Query: 98 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL 277
MG ECC +CL G P+ASLVAT LCF GVALFCGCGH AL GT ++E +FS N D+
Sbjct: 1 MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60
Query: 278 LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGM---- 445
L VI QYVIYG ASFFFLYG +LLAEGFYTT AV+++ G++KTT CG+ +S
Sbjct: 61 LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGG 120
Query: 446 -------------------------------FVFLTYVLGVAWLGVFGFSAVPVFMFYNI 532
FV +TY L V WL VF SAVPV++++N
Sbjct: 121 QKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNT 180
Query: 533 WSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAFPGKICGSALENICNTNEFYMSYHL 712
W+TC+ I P S +A + +C D R YG++PWNAFPGK+CGS L +IC T EF M++HL
Sbjct: 181 WTTCQSIAFP-SKTSASIGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHL 239
Query: 713 FIVACAGAGATVIALIHFLMILSSNWAYLK 802
FI A GA AT+++L+ F++ + N+A LK
Sbjct: 240 FIAAFVGAAATLVSLLTFMIAATYNFAVLK 269
Database: RefSeqSP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 434,620
Number of sequences in database: 1040
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,789,205
Number of Sequences: 1040
Number of extensions: 44745
Number of successful extensions: 130
Number of sequences better than 1.0e-05: 1
Number of HSP's better than 0.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 434,620
effective HSP length: 83
effective length of database: 348,300
effective search space used: 204103800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0114_A04
(2009 letters)
Database: RefSeqMP
45,328 sequences; 21,768,885 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_075611.1| glycoprotein m6b [Mus musculus] 550 e-156
Alignment gi|NP_705809.1| glycoprotein m6a [Mus musculus] 314 3e-85
Alignment gi|NP_035253.1| proteolipid protein 1 [Mus musculus] 268 2e-71
>ref|NP_075611.1| glycoprotein m6b [Mus musculus]
Length = 269
Score = 550 bits (1417), Expect = e-156
Identities = 266/269 (98%), Positives = 269/269 (100%)
Frame = +2
Query: 98 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL 277
MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL
Sbjct: 1 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL 60
Query: 278 LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFL 457
LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFL
Sbjct: 61 LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFL 120
Query: 458 TYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNA 637
TYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQSNGT+GVEQICVD+RQYGIIPWNA
Sbjct: 121 TYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQSNGTSGVEQICVDVRQYGIIPWNA 180
Query: 638 FPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASKM 817
FPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASKM
Sbjct: 181 FPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASKM 240
Query: 818 QAYQDIKAKEEQELQDIQSRSKEQLNSYT 904
QAYQDIKAKEEQELQDIQSRSKEQLNSYT
Sbjct: 241 QAYQDIKAKEEQELQDIQSRSKEQLNSYT 269
>ref|NP_705809.1| glycoprotein m6a [Mus musculus]
Length = 278
Score = 314 bits (804), Expect = 3e-85
Identities = 154/276 (55%), Positives = 208/276 (75%), Gaps = 8/276 (2%)
Frame = +2
Query: 101 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNTSDHA 274
GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F + D
Sbjct: 13 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFELARTAGDTL 72
Query: 275 LLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVF 454
+ +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S F+
Sbjct: 73 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 132
Query: 455 LTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVE--QICVDIRQYGIIP 628
LTY+ +AWLGV F+++PV+M++N+W+ C T VE +C+D+RQ+GI+
Sbjct: 133 LTYLFMLAWLGVTAFTSLPVYMYFNVWTIC--------RNTTLVEGANLCLDLRQFGIVT 184
Query: 629 WNAFPGKICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYL 799
KIC +A EN +C + E M++HLFIVA AGAGA VIA++H+LM+LS+NWAY+
Sbjct: 185 IGE-EKKIC-TASENFLRMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANWAYV 242
Query: 800 KDASKMQAYQDIKAKEEQELQDIQS-RSKEQLNSYT 904
KDA +MQ Y+DIK+KEEQEL DI S RSKE+LN+YT
Sbjct: 243 KDACRMQKYEDIKSKEEQELHDIHSTRSKERLNAYT 278
>ref|NP_035253.1| proteolipid protein 1 [Mus musculus]
Length = 277
Score = 268 bits (684), Expect = 2e-71
Identities = 133/270 (49%), Positives = 171/270 (63%), Gaps = 35/270 (12%)
Frame = +2
Query: 98 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL 277
MG ECC +CL G P+ASLVAT LCF GVALFCGCGH AL GT ++E +FS N D+
Sbjct: 1 MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60
Query: 278 LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGM---- 445
L VI QYVIYG ASFFFLYG +LLAEGFYTT AV+++ G++KTT CG+ +S
Sbjct: 61 LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGG 120
Query: 446 -------------------------------FVFLTYVLGVAWLGVFGFSAVPVFMFYNI 532
FV +TY L V WL VF SAVPV++++N
Sbjct: 121 QKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNT 180
Query: 533 WSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAFPGKICGSALENICNTNEFYMSYHL 712
W+TC+ I P S +A + +C D R YG++PWNAFPGK+CGS L +IC T EF M++HL
Sbjct: 181 WTTCQSIAFP-SKTSASIGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHL 239
Query: 713 FIVACAGAGATVIALIHFLMILSSNWAYLK 802
FI A GA AT+++L+ F++ + N+A LK
Sbjct: 240 FIAAFVGAAATLVSLLTFMIAATYNFAVLK 269
Database: RefSeqMP
Posted date: Aug 2, 2006 12:58 AM
Number of letters in database: 21,768,885
Number of sequences in database: 45,328
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,776,198
Number of Sequences: 45328
Number of extensions: 2239531
Number of successful extensions: 7292
Number of sequences better than 1.0e-05: 3
Number of HSP's better than 0.0 without gapping: 5980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7267
length of database: 21,768,885
effective HSP length: 110
effective length of database: 16,782,805
effective search space used: 9381587995
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)