Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0179_G10
(1723 letters)
Database: RefSeqBP
33,508 sequences; 16,112,626 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776945.1| collagen, type I, alpha 2 [Bos taurus] 666 0.0
Alignment gi|NP_001029211.1| collagen, type I, alpha 1 [Bos taurus] 407 e-113
Alignment gi|XP_588040.2| PREDICTED: similar to Collagen alpha 1(III) cha... 370 e-102
Alignment gi|XP_883439.1| PREDICTED: similar to Collagen alpha 1(III) cha... 370 e-102
Alignment gi|XP_871448.1| PREDICTED: similar to Collagen alpha 1(III) cha... 370 e-102
Alignment gi|XP_883522.1| PREDICTED: similar to Collagen alpha 1(III) cha... 333 2e-91
Alignment gi|XP_581318.2| PREDICTED: similar to procollagen, type V, alph... 308 7e-84
Alignment gi|XP_883483.1| PREDICTED: similar to Collagen alpha 1(III) cha... 277 2e-74
Alignment gi|XP_587946.2| PREDICTED: similar to alpha 1 type XI collagen ... 202 9e-52
Alignment gi|XP_612025.2| PREDICTED: similar to procollagen, type V, alph... 182 9e-46
>ref|NP_776945.1| collagen, type I, alpha 2 [Bos taurus]
Length = 1364
Score = 666 bits (1719), Expect = 0.0
Identities = 329/444 (74%), Positives = 342/444 (77%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
EAGRDGNPG+DGPPGRDGQ GHKGER KHGNRGE
Sbjct: 921 EAGRDGNPGNDGPPGRDGQPGHKGERGYPGNAGPVGAAGAPGPQGPVGPVGKHGNRGEPG 980
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQX 410
QGIRG+KGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQ
Sbjct: 981 PAGAVGPAGAVGPRGPSGPQGIRGDKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQG 1040
Query: 411 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXX 590
KDGR GQPGAVGPAGIR
Sbjct: 1041 APGAVGPAGPRGPAGPSGPAGKDGRIGQPGAVGPAGIRGSQGSQGPAGPPGPPGPPGPPG 1100
Query: 591 XXXXXYDFGYEGDFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPART 770
Y+FG++GDFYRADQPRSP SLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPART
Sbjct: 1101 PSGGGYEFGFDGDFYRADQPRSPTSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPART 1160
Query: 771 CRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQPENIPAKNWYRNSKV 950
CRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQPE+IP KNWYRNSK
Sbjct: 1161 CRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQPEDIPVKNWYRNSKA 1220
Query: 951 KKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLANHASQNITYHCKNSIAYMDEE 1130
KKHVW+GETINGGTQFEYN+EGVTTKEMATQLAFMRLLANHASQNITYHCKNSIAYMDEE
Sbjct: 1221 KKHVWVGETINGGTQFEYNVEGVTTKEMATQLAFMRLLANHASQNITYHCKNSIAYMDEE 1280
Query: 1131 TGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWRKTIIEYKTNKPSRLPIL 1310
TGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEW+KTIIEYKTNKPSRLPIL
Sbjct: 1281 TGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWQKTIIEYKTNKPSRLPIL 1340
Query: 1311 DIAPLDIGDADQEVSVDVGPVCFK 1382
DIAPLDIG ADQE+ +++GPVCFK
Sbjct: 1341 DIAPLDIGGADQEIRLNIGPVCFK 1364
Score = 53.9 bits (128), Expect = 4e-07
Identities = 43/160 (26%), Positives = 53/160 (33%), Gaps = 6/160 (3%)
Frame = +3
Query: 57 GRDGNPGSDGPPGRDGQAGHKGERXX------XXXXXXXXXXXXXXXXXXXXXXXKHGNR 218
G GNPG++G PG G AG G G++
Sbjct: 293 GPPGNPGANGLPGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSK 352
Query: 219 GEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHH 398
GE +G RG GE G GP G PGL+G+ G +GLPG G
Sbjct: 353 GESGNKGEPGAVGQPGPPGPSGEEGKRGSTGEIGPAGPPGPPGLRGNPGSRGLPGADGRA 412
Query: 399 GDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 518
G GR G+PG +GP G
Sbjct: 413 G---VMGPAGSRGATGPAGVRGPNGDSGRPGEPGLMGPRG 449
>ref|NP_001029211.1| collagen, type I, alpha 1 [Bos taurus]
Length = 1463
Score = 407 bits (1045), Expect = e-113
Identities = 209/456 (45%), Positives = 263/456 (57%), Gaps = 13/456 (2%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
E+GR+G PG++G PGRDG G KG+R K G+RGE
Sbjct: 1010 ESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETG 1069
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQX 410
QG RG+KGE G++G RG+ G +G +GLQG PG G G+Q
Sbjct: 1070 PAGPAGPIGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQG 1129
Query: 411 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXX 590
KDG G PG +GP G R
Sbjct: 1130 PSGASGPAGPRGPPGSAGSPGKDGLNGLPGPIGPPGPRGRTGDAGPAGPPGPPGPPGPPG 1189
Query: 591 XXXXXYDFGY-----------EGDFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLT 737
YD + G +YRAD +R +D EVD TLKSL+ QIE + +
Sbjct: 1190 PPSGGYDLSFLPQPPQEKAHDGGRYYRADDANV---VRDRDLEVDTTLKSLSQQIENIRS 1246
Query: 738 PEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQPENI 917
PEGSRKNPARTCRDL++ H +W SG YWIDPNQGC +DAIKV+C+ TGETC+ ++
Sbjct: 1247 PEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKVFCNMETGETCVYPTQPSV 1306
Query: 918 PAKNWY--RNSKVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLANHASQNIT 1091
KNWY +N K K+HVW GE++ GG QFEY +G ++A QL F+RL++ ASQNIT
Sbjct: 1307 AQKNWYISKNPKEKRHVWYGESMTGGFQFEYGGQGSDPADVAIQLTFLRLMSTEASQNIT 1366
Query: 1092 YHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWRKTII 1271
YHCKNS+AYMD++TGNLKKA++LQGSN++E+ AEGNSRFTY+V DGC+ T W KT+I
Sbjct: 1367 YHCKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTYSVTYDGCTSHTGAWGKTVI 1426
Query: 1272 EYKTNKPSRLPILDIAPLDIGDADQEVSVDVGPVCF 1379
EYKT K SRLPI+D+APLD+G DQE DVGP CF
Sbjct: 1427 EYKTTKTSRLPIIDVAPLDVGAPDQEFGFDVGPACF 1462
Score = 58.2 bits (139), Expect = 2e-08
Identities = 45/155 (29%), Positives = 51/155 (32%)
Frame = +3
Query: 54 AGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXX 233
AG+DG PG GPPG GQAG G K G RG
Sbjct: 558 AGQDGRPGPPGPPGARGQAGVMG---------------FPGPKGAAGEPGKAGERGVPGP 602
Query: 234 XXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXX 413
G G GE G++GP G PG +G G G PG AG G+Q
Sbjct: 603 PGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGV 662
Query: 414 XXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 518
+ G G PG GP G
Sbjct: 663 PGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRG 697
Score = 52.4 bits (124), Expect = 1e-06
Identities = 45/162 (27%), Positives = 52/162 (32%), Gaps = 6/162 (3%)
Frame = +3
Query: 57 GRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXX 236
G G PG+ GP G G G G K+G+ GE
Sbjct: 205 GEPGEPGASGPMGPRGPPGPPG---------------------------KNGDDGEAGK- 236
Query: 237 XXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPG------LKGHNGLQGLPGLAGHH 398
G GE+G PG +G RGLPG +KGH G GL G G
Sbjct: 237 -----------------PGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDA 279
Query: 399 GDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 524
G G G+PGA GPAG R
Sbjct: 280 GPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGAR 321
Score = 50.8 bits (120), Expect = 3e-06
Identities = 37/154 (24%), Positives = 47/154 (30%)
Frame = +3
Query: 57 GRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXX 236
G++G+ G G PGR G+ G G + G+ G
Sbjct: 226 GKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPK 285
Query: 237 XXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXX 416
+G+ GE+G PG GP G G G G G PG G G
Sbjct: 286 GEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFP 345
Query: 417 XXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 518
G G+PG GPAG
Sbjct: 346 GAVGAKGEGGPQGPRGSEGPQGVRGEPGPPGPAG 379
>ref|XP_588040.2| PREDICTED: similar to Collagen alpha 1(III) chain precursor isoform 1
[Bos taurus]
Length = 1448
Score = 370 bits (951), Expect = e-102
Identities = 206/460 (44%), Positives = 248/460 (53%), Gaps = 17/460 (3%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
E GRDGNPGSDG PGRDG G KG+R K G+RGE
Sbjct: 991 EPGRDGNPGSDGLPGRDGAPGAKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGETG 1050
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQX 410
QG RG+KGE G++G G+ G +G G G PG G G Q
Sbjct: 1051 PAGPSGAPGPAGSRGPPGPQGPRGDKGETGERGAMGIKGHRGFPGNPGAPGSPGPAGHQG 1110
Query: 411 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXX--- 581
KDG +G PG +GP G R
Sbjct: 1111 AVGSPGPAGPRGPVGPSGPPGKDGASGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPG 1170
Query: 582 ---------XXXXXXXXYDFGYE--GDF--YRADQPRSPPSLRPKDYEVDATLKSLNNQI 722
G E G F Y D+P + E+ +LKS+N QI
Sbjct: 1171 PPGAPGPCCGAGGVAAIAGVGAEKAGGFAPYYGDEPID---FKINTDEIMTSLKSVNGQI 1227
Query: 723 ETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRA 902
E+L++P+GSRKNPAR CRDL+ HPE SG YW+DPNQGC +DAIKVYC+ TGETCI A
Sbjct: 1228 ESLISPDGSRKNPARNCRDLKFCHPELQSGEYWVDPNQGCKLDAIKVYCNMETGETCISA 1287
Query: 903 QPENIPAKNWYRNSKV-KKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLANHAS 1079
P IP KNW+ +S KKHVW GE++ GG QF Y + + QLAF+RLL++ AS
Sbjct: 1288 SPLTIPQKNWWTDSGAEKKHVWFGESMEGGFQFSYGNPELPEDVLDVQLAFLRLLSSRAS 1347
Query: 1080 QNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWR 1259
QNITYHCKNSIAYMD +GN+KKA+ L GSN+ E AEGNS+FTYTVL DGC+K T EW
Sbjct: 1348 QNITYHCKNSIAYMDHASGNVKKALKLMGSNEGEFKAEGNSKFTYTVLEDGCTKHTGEWG 1407
Query: 1260 KTIIEYKTNKPSRLPILDIAPLDIGDADQEVSVDVGPVCF 1379
KT+ +Y+T K RLPI+DIAP DIG DQE D+GPVCF
Sbjct: 1408 KTVFQYQTRKAVRLPIVDIAPYDIGGPDQEFGADIGPVCF 1447
Score = 51.2 bits (121), Expect = 2e-06
Identities = 42/158 (26%), Positives = 48/158 (30%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
E GR G PGS GP G+ G G G + K+G G
Sbjct: 541 ETGRPGPPGSPGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPAGKNGETGPQG 600
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQX 410
QG++G G G G G PG G G G PG+ G GD
Sbjct: 601 PPGPTGPSGDKGDTGPPGPQGLQGLPGTSGPPGENGKPGEPGPKGEAGAPGIPGGKGDSG 660
Query: 411 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 524
G G PGA GP G R
Sbjct: 661 A---------------------PGERGPPGAGGPPGPR 677
Score = 49.3 bits (116), Expect = 9e-06
Identities = 42/155 (27%), Positives = 50/155 (32%)
Frame = +3
Query: 57 GRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXX 236
G G PG++G PG+ G AG G+ G RGE
Sbjct: 396 GPPGPPGTNGVPGQRGAAGEPGKNGAKGDP---------------------GPRGERGEA 434
Query: 237 XXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXX 416
G G G PG G RG+PG +G G GLPG G GD+
Sbjct: 435 GSPGIAGPKGEDGKDGSPGEPGANGLPGAAGERGVPGFRGPAGANGLPGEKGPPGDR--- 491
Query: 417 XXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 521
+ GR G PG G GI
Sbjct: 492 ------GGPGPAGPRGVAGEPGRDGLPGGPGLRGI 520
>ref|XP_883439.1| PREDICTED: similar to Collagen alpha 1(III) chain precursor isoform 6
[Bos taurus]
Length = 1217
Score = 370 bits (951), Expect = e-102
Identities = 206/460 (44%), Positives = 248/460 (53%), Gaps = 17/460 (3%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
E GRDGNPGSDG PGRDG G KG+R K G+RGE
Sbjct: 760 EPGRDGNPGSDGLPGRDGAPGAKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGETG 819
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQX 410
QG RG+KGE G++G G+ G +G G G PG G G Q
Sbjct: 820 PAGPSGAPGPAGSRGPPGPQGPRGDKGETGERGAMGIKGHRGFPGNPGAPGSPGPAGHQG 879
Query: 411 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXX--- 581
KDG +G PG +GP G R
Sbjct: 880 AVGSPGPAGPRGPVGPSGPPGKDGASGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPG 939
Query: 582 ---------XXXXXXXXYDFGYE--GDF--YRADQPRSPPSLRPKDYEVDATLKSLNNQI 722
G E G F Y D+P + E+ +LKS+N QI
Sbjct: 940 PPGAPGPCCGAGGVAAIAGVGAEKAGGFAPYYGDEPID---FKINTDEIMTSLKSVNGQI 996
Query: 723 ETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRA 902
E+L++P+GSRKNPAR CRDL+ HPE SG YW+DPNQGC +DAIKVYC+ TGETCI A
Sbjct: 997 ESLISPDGSRKNPARNCRDLKFCHPELQSGEYWVDPNQGCKLDAIKVYCNMETGETCISA 1056
Query: 903 QPENIPAKNWYRNSKV-KKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLANHAS 1079
P IP KNW+ +S KKHVW GE++ GG QF Y + + QLAF+RLL++ AS
Sbjct: 1057 SPLTIPQKNWWTDSGAEKKHVWFGESMEGGFQFSYGNPELPEDVLDVQLAFLRLLSSRAS 1116
Query: 1080 QNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWR 1259
QNITYHCKNSIAYMD +GN+KKA+ L GSN+ E AEGNS+FTYTVL DGC+K T EW
Sbjct: 1117 QNITYHCKNSIAYMDHASGNVKKALKLMGSNEGEFKAEGNSKFTYTVLEDGCTKHTGEWG 1176
Query: 1260 KTIIEYKTNKPSRLPILDIAPLDIGDADQEVSVDVGPVCF 1379
KT+ +Y+T K RLPI+DIAP DIG DQE D+GPVCF
Sbjct: 1177 KTVFQYQTRKAVRLPIVDIAPYDIGGPDQEFGADIGPVCF 1216
Score = 51.2 bits (121), Expect = 2e-06
Identities = 42/158 (26%), Positives = 48/158 (30%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
E GR G PGS GP G+ G G G + K+G G
Sbjct: 310 ETGRPGPPGSPGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPAGKNGETGPQG 369
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQX 410
QG++G G G G G PG G G G PG+ G GD
Sbjct: 370 PPGPTGPSGDKGDTGPPGPQGLQGLPGTSGPPGENGKPGEPGPKGEAGAPGIPGGKGDSG 429
Query: 411 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 524
G G PGA GP G R
Sbjct: 430 A---------------------PGERGPPGAGGPPGPR 446
Score = 49.3 bits (116), Expect = 9e-06
Identities = 42/155 (27%), Positives = 50/155 (32%)
Frame = +3
Query: 57 GRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXX 236
G G PG++G PG+ G AG G+ G RGE
Sbjct: 165 GPPGPPGTNGVPGQRGAAGEPGKNGAKGDP---------------------GPRGERGEA 203
Query: 237 XXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXX 416
G G G PG G RG+PG +G G GLPG G GD+
Sbjct: 204 GSPGIAGPKGEDGKDGSPGEPGANGLPGAAGERGVPGFRGPAGANGLPGEKGPPGDR--- 260
Query: 417 XXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 521
+ GR G PG G GI
Sbjct: 261 ------GGPGPAGPRGVAGEPGRDGLPGGPGLRGI 289
>ref|XP_871448.1| PREDICTED: similar to Collagen alpha 1(III) chain precursor isoform 2
[Bos taurus]
Length = 1466
Score = 370 bits (951), Expect = e-102
Identities = 206/460 (44%), Positives = 248/460 (53%), Gaps = 17/460 (3%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
E GRDGNPGSDG PGRDG G KG+R K G+RGE
Sbjct: 1009 EPGRDGNPGSDGLPGRDGAPGAKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGETG 1068
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQX 410
QG RG+KGE G++G G+ G +G G G PG G G Q
Sbjct: 1069 PAGPSGAPGPAGSRGPPGPQGPRGDKGETGERGAMGIKGHRGFPGNPGAPGSPGPAGHQG 1128
Query: 411 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXX--- 581
KDG +G PG +GP G R
Sbjct: 1129 AVGSPGPAGPRGPVGPSGPPGKDGASGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPG 1188
Query: 582 ---------XXXXXXXXYDFGYE--GDF--YRADQPRSPPSLRPKDYEVDATLKSLNNQI 722
G E G F Y D+P + E+ +LKS+N QI
Sbjct: 1189 PPGAPGPCCGAGGVAAIAGVGAEKAGGFAPYYGDEPID---FKINTDEIMTSLKSVNGQI 1245
Query: 723 ETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRA 902
E+L++P+GSRKNPAR CRDL+ HPE SG YW+DPNQGC +DAIKVYC+ TGETCI A
Sbjct: 1246 ESLISPDGSRKNPARNCRDLKFCHPELQSGEYWVDPNQGCKLDAIKVYCNMETGETCISA 1305
Query: 903 QPENIPAKNWYRNSKV-KKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLANHAS 1079
P IP KNW+ +S KKHVW GE++ GG QF Y + + QLAF+RLL++ AS
Sbjct: 1306 SPLTIPQKNWWTDSGAEKKHVWFGESMEGGFQFSYGNPELPEDVLDVQLAFLRLLSSRAS 1365
Query: 1080 QNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWR 1259
QNITYHCKNSIAYMD +GN+KKA+ L GSN+ E AEGNS+FTYTVL DGC+K T EW
Sbjct: 1366 QNITYHCKNSIAYMDHASGNVKKALKLMGSNEGEFKAEGNSKFTYTVLEDGCTKHTGEWG 1425
Query: 1260 KTIIEYKTNKPSRLPILDIAPLDIGDADQEVSVDVGPVCF 1379
KT+ +Y+T K RLPI+DIAP DIG DQE D+GPVCF
Sbjct: 1426 KTVFQYQTRKAVRLPIVDIAPYDIGGPDQEFGADIGPVCF 1465
Score = 51.2 bits (121), Expect = 2e-06
Identities = 42/158 (26%), Positives = 48/158 (30%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
E GR G PGS GP G+ G G G + K+G G
Sbjct: 559 ETGRPGPPGSPGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPAGKNGETGPQG 618
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQX 410
QG++G G G G G PG G G G PG+ G GD
Sbjct: 619 PPGPTGPSGDKGDTGPPGPQGLQGLPGTSGPPGENGKPGEPGPKGEAGAPGIPGGKGDSG 678
Query: 411 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 524
G G PGA GP G R
Sbjct: 679 A---------------------PGERGPPGAGGPPGPR 695
Score = 49.3 bits (116), Expect = 9e-06
Identities = 42/155 (27%), Positives = 50/155 (32%)
Frame = +3
Query: 57 GRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXX 236
G G PG++G PG+ G AG G+ G RGE
Sbjct: 414 GPPGPPGTNGVPGQRGAAGEPGKNGAKGDP---------------------GPRGERGEA 452
Query: 237 XXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXX 416
G G G PG G RG+PG +G G GLPG G GD+
Sbjct: 453 GSPGIAGPKGEDGKDGSPGEPGANGLPGAAGERGVPGFRGPAGANGLPGEKGPPGDR--- 509
Query: 417 XXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 521
+ GR G PG G GI
Sbjct: 510 ------GGPGPAGPRGVAGEPGRDGLPGGPGLRGI 538
>ref|XP_883522.1| PREDICTED: similar to Collagen alpha 1(III) chain precursor isoform 8
[Bos taurus]
Length = 1361
Score = 333 bits (855), Expect = 2e-91
Identities = 198/476 (41%), Positives = 233/476 (48%), Gaps = 35/476 (7%)
Frame = +3
Query: 57 GRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXX 236
G G PGS G PG+DG G G G G
Sbjct: 888 GNPGPPGSSGAPGKDGPPGPPGSNGAPGSPGISGPKGDSGPPGERGAPGPQGPPGAPGPL 947
Query: 237 XXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGL------QGLPGLAGHH 398
G RG G G KG G PG G NG QGLPGLAG
Sbjct: 948 GIAGLTGARGLAGPPGMPGARGSPGPQGIKGENGKPGPSGQNGERGPPGPQGLPGLAGTA 1007
Query: 399 GDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGA------------VGPAGIRXXXXXX 542
G+ G G PGA VGPAG
Sbjct: 1008 GEPGRDGNPGSDGLPGRDGAPGAKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGNRGER 1067
Query: 543 XXXXXXXXXXXXX------------XXXXXXXXYDFGYE--GDF--YRADQPRSPPSLRP 674
G E G F Y D+P +
Sbjct: 1068 GSEGSPGHPGQPGPPGPPGAPGPCCGAGGVAAIAGVGAEKAGGFAPYYGDEPID---FKI 1124
Query: 675 KDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDA 854
E+ +LKS+N QIE+L++P+GSRKNPAR CRDL+ HPE SG YW+DPNQGC +DA
Sbjct: 1125 NTDEIMTSLKSVNGQIESLISPDGSRKNPARNCRDLKFCHPELQSGEYWVDPNQGCKLDA 1184
Query: 855 IKVYCDFSTGETCIRAQPENIPAKNWYRNSKV-KKHVWLGETINGGTQFEYNMEGVTTKE 1031
IKVYC+ TGETCI A P IP KNW+ +S KKHVW GE++ GG QF Y +
Sbjct: 1185 IKVYCNMETGETCISASPLTIPQKNWWTDSGAEKKHVWFGESMEGGFQFSYGNPELPEDV 1244
Query: 1032 MATQLAFMRLLANHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFT 1211
+ QLAF+RLL++ ASQNITYHCKNSIAYMD +GN+KKA+ L GSN+ E AEGNS+FT
Sbjct: 1245 LDVQLAFLRLLSSRASQNITYHCKNSIAYMDHASGNVKKALKLMGSNEGEFKAEGNSKFT 1304
Query: 1212 YTVLVDGCSKKTNEWRKTIIEYKTNKPSRLPILDIAPLDIGDADQEVSVDVGPVCF 1379
YTVL DGC+K T EW KT+ +Y+T K RLPI+DIAP DIG DQE D+GPVCF
Sbjct: 1305 YTVLEDGCTKHTGEWGKTVFQYQTRKAVRLPIVDIAPYDIGGPDQEFGADIGPVCF 1360
Score = 59.7 bits (143), Expect = 7e-09
Identities = 41/115 (35%), Positives = 45/115 (39%), Gaps = 1/115 (0%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
E GRDGNPGSDG PGRDG G KG+R K GNRGE
Sbjct: 1009 EPGRDGNPGSDGLPGRDGAPGAKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGNRGE-- 1066
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGH-NGLQGLPGLAG 392
+G G G PG GP G PG G G G+ +AG
Sbjct: 1067 -------------------RGSEGSPGHPGQPGPPGPPGAPGPCCGAGGVAAIAG 1102
Score = 51.2 bits (121), Expect = 2e-06
Identities = 42/158 (26%), Positives = 48/158 (30%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
E GR G PGS GP G+ G G G + K+G G
Sbjct: 559 ETGRPGPPGSPGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPAGKNGETGPQG 618
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQX 410
QG++G G G G G PG G G G PG+ G GD
Sbjct: 619 PPGPTGPSGDKGDTGPPGPQGLQGLPGTSGPPGENGKPGEPGPKGEAGAPGIPGGKGDSG 678
Query: 411 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 524
G G PGA GP G R
Sbjct: 679 A---------------------PGERGPPGAGGPPGPR 695
Score = 49.3 bits (116), Expect = 9e-06
Identities = 42/155 (27%), Positives = 50/155 (32%)
Frame = +3
Query: 57 GRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXX 236
G G PG++G PG+ G AG G+ G RGE
Sbjct: 414 GPPGPPGTNGVPGQRGAAGEPGKNGAKGDP---------------------GPRGERGEA 452
Query: 237 XXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXX 416
G G G PG G RG+PG +G G GLPG G GD+
Sbjct: 453 GSPGIAGPKGEDGKDGSPGEPGANGLPGAAGERGVPGFRGPAGANGLPGEKGPPGDR--- 509
Query: 417 XXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 521
+ GR G PG G GI
Sbjct: 510 ------GGPGPAGPRGVAGEPGRDGLPGGPGLRGI 538
>ref|XP_581318.2| PREDICTED: similar to procollagen, type V, alpha 2 [Bos taurus]
Length = 1465
Score = 308 bits (790), Expect = 7e-84
Identities = 179/445 (40%), Positives = 228/445 (51%), Gaps = 2/445 (0%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
E G +G G+DG PGRDG G +G+R G RG+
Sbjct: 1047 EPGPEGPAGNDGTPGRDGAVGERGDRGDPGPAGLPGSQGAPGTPGPVGAPGDAGQRGDPG 1106
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQX 410
G +G G PG GPRG PG G +G +G PG G G
Sbjct: 1107 SRGPIGPPGRAGKRGLLGPTGEQGSAGIPGPFGPRGPPGPVGPSGKEGSPGPLGPIGPPG 1166
Query: 411 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXX 590
+G G+PG GP G
Sbjct: 1167 VRGSVGEAG------------PEGPPGEPGPPGPPG--------------PPGHLTAALG 1200
Query: 591 XXXXXYDFGYEGDFYRADQPRSPPSLRPK-DYEVDATLKSLNNQIETLLTPEGSRKNPAR 767
YD + ++ P + K D V ATLKSL++QIET+ +P+GSRK+PAR
Sbjct: 1201 DIMGHYDDSMPDPLPEFTEDQAAPDDKNKTDPGVHATLKSLSSQIETMRSPDGSRKHPAR 1260
Query: 768 TCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQPENIPAKNWYRN-S 944
TC DL+L H SG YWIDPNQG DAIKVYC+ TGETCI A P ++P K W+ + S
Sbjct: 1261 TCDDLKLCHSAKKSGEYWIDPNQGSAEDAIKVYCNMETGETCISANPSSVPRKTWWASKS 1320
Query: 945 KVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLANHASQNITYHCKNSIAYMD 1124
K VW G +N G+QF Y + + TQ+ F+RLL+ ASQNITY CKNS+ YMD
Sbjct: 1321 PDNKPVWYGLDMNRGSQFVYG-DHQSPNAAITQMTFLRLLSKEASQNITYICKNSVGYMD 1379
Query: 1125 EETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWRKTIIEYKTNKPSRLP 1304
++ NLKKAV+L+GSND+E+ AEGN RF Y VL D CSK+ KTI EY+T +RLP
Sbjct: 1380 DQAKNLKKAVVLKGSNDLEIKAEGNVRFRYIVLHDSCSKRNGNVGKTIFEYRTQNVARLP 1439
Query: 1305 ILDIAPLDIGDADQEVSVDVGPVCF 1379
I+D+AP+D+G DQE V++GPVCF
Sbjct: 1440 IIDLAPVDVGSTDQEFGVEIGPVCF 1464
Score = 56.2 bits (134), Expect = 8e-08
Identities = 43/156 (27%), Positives = 50/156 (32%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
EAG+ G+ G G PG G G +GER G RGE
Sbjct: 690 EAGKPGDQGVPGDPGAVGPLGPRGERG------------------------NPGERGEPG 725
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQX 410
+G G G PGD GP GL G+ G G+ G PG G G
Sbjct: 726 ITGLPGEKGMAGGHGPDGPKGSPGPPGTPGDTGPPGLQGMPGERGIAGTPGPKGDRG--- 782
Query: 411 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 518
DG G PG +GP G
Sbjct: 783 ---------GIGEKGAEGTAGNDGARGLPGPLGPPG 809
Score = 49.7 bits (117), Expect = 7e-06
Identities = 42/161 (26%), Positives = 51/161 (31%), Gaps = 6/161 (3%)
Frame = +3
Query: 57 GRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXX 236
G G+PG+ GPPG G+ G G R G +G+
Sbjct: 506 GPRGDPGTVGPPGPVGERGAPGNRGFPGSDGLPGPKGAQGERGPVGSSGPKGGQGDPGRP 565
Query: 237 XXXXXXXXXXXXXXXXXQGIRGE------KGEPGDKGPRGLPGLKGHNGLQGLPGLAGHH 398
QG G+ GE G GP G G++G G GLPG G
Sbjct: 566 GEPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPGPPGSIGIRGQPGSMGLPGPKGSS 625
Query: 399 GDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 521
GD KDG G G VGP G+
Sbjct: 626 GDP---GKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGPPGL 663
>ref|XP_883483.1| PREDICTED: similar to Collagen alpha 1(III) chain precursor isoform 7
[Bos taurus]
Length = 1426
Score = 277 bits (709), Expect = 2e-74
Identities = 162/392 (41%), Positives = 197/392 (50%), Gaps = 17/392 (4%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
E GRDGNPGSDG PGRDG G KG+R K G+RGE
Sbjct: 1009 EPGRDGNPGSDGLPGRDGAPGAKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGETG 1068
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQX 410
QG RG+KGE G++G G+ G +G G G PG G G Q
Sbjct: 1069 PAGPSGAPGPAGSRGPPGPQGPRGDKGETGERGAMGIKGHRGFPGNPGAPGSPGPAGHQG 1128
Query: 411 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXX--- 581
KDG +G PG +GP G R
Sbjct: 1129 AVGSPGPAGPRGPVGPSGPPGKDGASGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPG 1188
Query: 582 ---------XXXXXXXXYDFGYE--GDF--YRADQPRSPPSLRPKDYEVDATLKSLNNQI 722
G E G F Y D+P + E+ +LKS+N QI
Sbjct: 1189 PPGAPGPCCGAGGVAAIAGVGAEKAGGFAPYYGDEPID---FKINTDEIMTSLKSVNGQI 1245
Query: 723 ETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRA 902
E+L++P+GSRKNPAR CRDL+ HPE SG YW+DPNQGC +DAIKVYC+ TGETCI A
Sbjct: 1246 ESLISPDGSRKNPARNCRDLKFCHPELQSGEYWVDPNQGCKLDAIKVYCNMETGETCISA 1305
Query: 903 QPENIPAKNWYRNSKV-KKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLANHAS 1079
P IP KNW+ +S KKHVW GE++ GG QF Y + + QLAF+RLL++ AS
Sbjct: 1306 SPLTIPQKNWWTDSGAEKKHVWFGESMEGGFQFSYGNPELPEDVLDVQLAFLRLLSSRAS 1365
Query: 1080 QNITYHCKNSIAYMDEETGNLKKAVILQGSND 1175
QNITYHCKNSIAYMD +GN+KKA+ L GSN+
Sbjct: 1366 QNITYHCKNSIAYMDHASGNVKKALKLMGSNE 1397
Score = 51.2 bits (121), Expect = 2e-06
Identities = 42/158 (26%), Positives = 48/158 (30%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
E GR G PGS GP G+ G G G + K+G G
Sbjct: 559 ETGRPGPPGSPGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPAGKNGETGPQG 618
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQX 410
QG++G G G G G PG G G G PG+ G GD
Sbjct: 619 PPGPTGPSGDKGDTGPPGPQGLQGLPGTSGPPGENGKPGEPGPKGEAGAPGIPGGKGDSG 678
Query: 411 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 524
G G PGA GP G R
Sbjct: 679 A---------------------PGERGPPGAGGPPGPR 695
Score = 49.3 bits (116), Expect = 9e-06
Identities = 42/155 (27%), Positives = 50/155 (32%)
Frame = +3
Query: 57 GRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXX 236
G G PG++G PG+ G AG G+ G RGE
Sbjct: 414 GPPGPPGTNGVPGQRGAAGEPGKNGAKGDP---------------------GPRGERGEA 452
Query: 237 XXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXX 416
G G G PG G RG+PG +G G GLPG G GD+
Sbjct: 453 GSPGIAGPKGEDGKDGSPGEPGANGLPGAAGERGVPGFRGPAGANGLPGEKGPPGDR--- 509
Query: 417 XXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 521
+ GR G PG G GI
Sbjct: 510 ------GGPGPAGPRGVAGEPGRDGLPGGPGLRGI 538
>ref|XP_587946.2| PREDICTED: similar to alpha 1 type XI collagen isoform A
preproprotein, partial [Bos taurus]
Length = 618
Score = 202 bits (513), Expect = 9e-52
Identities = 155/491 (31%), Positives = 201/491 (40%), Gaps = 48/491 (9%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
EAG G PG GPPG G G +GE+ K G G
Sbjct: 164 EAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEG--- 220
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKG---------HNGLQGL-- 377
G G+ G PG GP GLPGLKG H GL GL
Sbjct: 221 ------LRGIPGPVGEQGLPGAAGQDGPPGPLGPPGLPGLKGDPGSKGEKGHPGLIGLIG 274
Query: 378 -PGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXX 554
PG G GD+ G G PG GP G +
Sbjct: 275 PPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPIGPPGPPGLPGPQGPKGTKGSTGPA- 333
Query: 555 XXXXXXXXXXXXXXXXXYDFGYEGDFYRADQPRSP----------PSLRPK--------- 677
G +GD P P P L PK
Sbjct: 334 --------------------GQKGDSGLPGPPGPPGPPGEVIQPLPILSPKKTRRHAEST 373
Query: 678 ---------DY-----EVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGY 815
DY E+ +L SL IE + P G++ NPARTC+DL+LSHP++ G
Sbjct: 374 QADAGDNILDYNDGMEEIFGSLNSLKQDIEHMKFPMGTQTNPARTCKDLQLSHPDFPDGE 433
Query: 816 YWIDPNQGCTMDAIKVYCDF-STGETCI--RAQPENIPAKNWYRNSKVKKHVWLGETING 986
YWIDPNQGC+ D+ KVYC+F S GETCI + E + +W K K W E G
Sbjct: 434 YWIDPNQGCSGDSFKVYCNFTSGGETCIYPDKKSEGVRISSW---PKEKPGSWFSEFKRG 490
Query: 987 GTQFEYNMEGVTTKEMATQLAFMRLLANHASQNITYHCKNSIAYMDEETGNLKKAVILQG 1166
++EG + Q+ F++LL A QN TY+C S+A+ D +G+ KA+ G
Sbjct: 491 KLLSYLDIEGNSIN--MVQMTFLKLLTASARQNFTYYCHQSVAWYDMSSGSYDKALRFLG 548
Query: 1167 SNDVELVAEGNSRFTYTVLVDGCSKKTNEWRKTIIEYKTNKPSRLPILDIAPLDIGDADQ 1346
SND E+ + N L DGC+ + + KT+IE T K ++PI+D+ D GD +Q
Sbjct: 549 SNDEEMSYDNNPYI--KALFDGCASRKG-YEKTVIEINTPKIDQVPIVDVMINDFGDQNQ 605
Query: 1347 EVSVDVGPVCF 1379
+ +VGPVCF
Sbjct: 606 KFGFEVGPVCF 616
>ref|XP_612025.2| PREDICTED: similar to procollagen, type V, alpha 1 [Bos taurus]
Length = 928
Score = 182 bits (461), Expect = 9e-46
Identities = 136/448 (30%), Positives = 188/448 (41%), Gaps = 5/448 (1%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
E G G PG DGPPG G G G + G +GE
Sbjct: 561 EQGLPGAPGPDGPPGPMGPPGLPGLKGDS------------------------GPKGEKG 596
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQX 410
+G+ G +G G KG +G+ G G G G PGL G G +
Sbjct: 597 HPGLIGLIGPPGEQGEKGDRGVPGPQGSSGPKGEQGITGPSGPIGPPGPPGLPGPPGPKG 656
Query: 411 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXX 590
G GQPG GP G
Sbjct: 657 AKGSSGPTG------------PKGEAGQPGPPGPPGPPGEVIQPLPIQASRTRRNIDASQ 704
Query: 591 XXXXXYDFGYEGDFYRADQPRSPPSLRPKDY-----EVDATLKSLNNQIETLLTPEGSRK 755
EG+ Y DY E+ +L SL +IE + P G+ +
Sbjct: 705 LMDDA-----EGEQYM-------------DYADGMEEIFGSLNSLKLEIEQMKRPLGTPQ 746
Query: 756 NPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQPENIPAKNWY 935
NPARTC+DL+L HP++ G YW+DPNQGC+ D+ KVYC+F+ G + + P+ I + ++
Sbjct: 747 NPARTCKDLQLCHPDFPDGEYWVDPNQGCSRDSFKVYCNFTAGGSTCVSPPDQIRSLSY- 805
Query: 936 RNSKVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLANHASQNITYHCKNSIA 1115
E N GV Q+ F+RLL+ A QNITY+C S+A
Sbjct: 806 ------------------VDAEGNPVGV------VQMTFLRLLSASAHQNITYNCYQSVA 841
Query: 1116 YMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWRKTIIEYKTNKPS 1295
+ D TG+ KA+ GSND E+ + NS + LVDGC+ K ++KT++E T K
Sbjct: 842 WQDAATGSYDKAMRFLGSNDEEM-SYDNSPY-IRALVDGCATKKG-YQKTVLEIDTPKVE 898
Query: 1296 RLPILDIAPLDIGDADQEVSVDVGPVCF 1379
++PI+DI D G+A Q+ +VGP CF
Sbjct: 899 QVPIVDIMFNDFGEASQKFGFEVGPACF 926
Score = 53.5 bits (127), Expect = 5e-07
Identities = 42/154 (27%), Positives = 51/154 (33%)
Frame = +3
Query: 57 GRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXX 236
G DG+ G G PG+ G G KGE+ G G
Sbjct: 266 GEDGDKGEIGEPGQKGSKGDKGEQ---------------------------GPPGPTGPQ 298
Query: 237 XXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXX 416
+G +G G+ GD+GPRG PG G GLQGLPG G G+
Sbjct: 299 GPIGQPGPSGADGEPGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDV 358
Query: 417 XXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 518
DG G PG +G G
Sbjct: 359 GQMGPPGPPGPRGPSGAPGADGPQGPPGGIGNPG 392
Database: RefSeqBP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 16,112,626
Number of sequences in database: 33,508
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,061,794
Number of Sequences: 33508
Number of extensions: 924368
Number of successful extensions: 13771
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 2629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8363
length of database: 16,112,626
effective HSP length: 107
effective length of database: 12,527,270
effective search space used: 5837707820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0179_G10
(1723 letters)
Database: RefSeqCP
33,732 sequences; 19,266,565 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003187.1| alpha 2 type I collagen [Canis familiaris] 683 0.0
Alignment gi|NP_001006952.1| alpha 1 type II collagen [Canis familiaris] 424 e-118
Alignment gi|NP_001003090.1| alpha 1 type I collagen [Canis familiaris] 408 e-113
Alignment gi|XP_863148.1| PREDICTED: similar to Collagen alpha 1(III) cha... 368 e-101
Alignment gi|XP_863124.1| PREDICTED: similar to Collagen alpha 1(III) cha... 368 e-101
Alignment gi|XP_863103.1| PREDICTED: similar to Collagen alpha 1(III) cha... 368 e-101
Alignment gi|XP_863049.1| PREDICTED: similar to Collagen alpha 1(III) cha... 368 e-101
Alignment gi|XP_851009.1| PREDICTED: similar to Collagen alpha 1(III) cha... 368 e-101
Alignment gi|XP_535997.2| PREDICTED: similar to Collagen alpha 1(III) cha... 343 4e-94
Alignment gi|XP_863024.1| PREDICTED: similar to Collagen alpha 1(III) cha... 334 1e-91
>ref|NP_001003187.1| alpha 2 type I collagen [Canis familiaris]
Length = 1366
Score = 683 bits (1762), Expect = 0.0
Identities = 340/444 (76%), Positives = 345/444 (77%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
EAGRDGNPG+DGPPGRDGQAGHKGER KHGNRGE
Sbjct: 923 EAGRDGNPGNDGPPGRDGQAGHKGERGYPGNIGPVGAVGAPGPHGPVGPTGKHGNRGEPG 982
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQX 410
QGIRG+KGEPG+KGPRGLPGLKGHNGLQGLPGLAG HGDQ
Sbjct: 983 PAGSVGPVGAVGPRGPSGPQGIRGDKGEPGEKGPRGLPGLKGHNGLQGLPGLAGQHGDQG 1042
Query: 411 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXX 590
KDGRTGQPG VGPAGIR
Sbjct: 1043 APGSVGPAGPRGPAGPSGPAGKDGRTGQPGTVGPAGIRGSQGSQGPAGPPGPPGPPGPPG 1102
Query: 591 XXXXXYDFGYEGDFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPART 770
YDFGYEGDFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPART
Sbjct: 1103 PSGGGYDFGYEGDFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPART 1162
Query: 771 CRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQPENIPAKNWYRNSKV 950
CRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQPENIPAKNWYRNSKV
Sbjct: 1163 CRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQPENIPAKNWYRNSKV 1222
Query: 951 KKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLANHASQNITYHCKNSIAYMDEE 1130
KKH+WLGETINGGTQFEYN+EGVTTKEMATQLAFMRLLANHASQNITYHCKNSIAYMDEE
Sbjct: 1223 KKHIWLGETINGGTQFEYNVEGVTTKEMATQLAFMRLLANHASQNITYHCKNSIAYMDEE 1282
Query: 1131 TGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWRKTIIEYKTNKPSRLPIL 1310
TGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWRKTIIEYKTNKPSRLPIL
Sbjct: 1283 TGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWRKTIIEYKTNKPSRLPIL 1342
Query: 1311 DIAPLDIGDADQEVSVDVGPVCFK 1382
DIAPLDIGDADQE VDVGPVCFK
Sbjct: 1343 DIAPLDIGDADQEFRVDVGPVCFK 1366
Score = 53.1 bits (126), Expect = 8e-07
Identities = 44/155 (28%), Positives = 51/155 (32%)
Frame = +3
Query: 54 AGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXX 233
AG G PG G PG G AG G R G++GE
Sbjct: 318 AGAPGLPGPRGIPGPVGAAGATGARGIVGEPGPA------------------GSKGESGN 359
Query: 234 XXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXX 413
+G RG GE G GP G PGL+G G +GLPG G G
Sbjct: 360 KGEPGSAGAQGPPGPSGEEGKRGPNGEAGSAGPSGPPGLRGSPGSRGLPGADGPAG---V 416
Query: 414 XXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 518
GR G+PG +GP G
Sbjct: 417 MGPPGPRGATGPAGVRGPNGDSGRPGEPGLMGPRG 451
Score = 50.8 bits (120), Expect = 4e-06
Identities = 40/156 (25%), Positives = 45/156 (28%)
Frame = +3
Query: 57 GRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXX 236
G GNPG DG G G G G + G G
Sbjct: 664 GEIGNPGRDGARGAPGAMGAPGPAGATGDRGEAGPAGPAGPAGPRGTPGERGEVGPAGPN 723
Query: 237 XXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXX 416
+G +G KGE G GP G G G +G G PG AG GD
Sbjct: 724 GFAGPAGAAGQPGAKGERGTKGPKGENGPVGPTGPIGSAGPSGPNGPPGPAGSRGDGGPP 783
Query: 417 XXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 524
G G PGA G G+R
Sbjct: 784 GATGFPGAAGRTGPPGPSGITGPPGPPGAAGKEGLR 819
>ref|NP_001006952.1| alpha 1 type II collagen [Canis familiaris]
Length = 1487
Score = 424 bits (1089), Expect = e-118
Identities = 223/456 (48%), Positives = 267/456 (58%), Gaps = 13/456 (2%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
E GR+G+PG+DGPPGRDG AG KG+R K G+RGE
Sbjct: 1033 EPGREGSPGADGPPGRDGAAGVKGDRGETGPVGAPGAPGSPGSPGPAGPTGKQGDRGEAG 1092
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQX 410
QG RG+KGE G+ G RGL G +G GLQGLPG G GDQ
Sbjct: 1093 AQGPMGPAGPAGARGIPGPQGPRGDKGEAGEAGERGLKGHRGFTGLQGLPGPPGPSGDQG 1152
Query: 411 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXX 590
KDG G PG +GP G R
Sbjct: 1153 ASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPG 1212
Query: 591 XXXXXYDFG-YEG-----------DFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLL 734
D + G + RADQ LR D EVDATLKSLNNQIE++
Sbjct: 1213 PPGPGIDMSAFAGLGQREKGPDPLQYMRADQAAG--DLRQHDAEVDATLKSLNNQIESIR 1270
Query: 735 TPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQPEN 914
+PEGSRKNPARTCRDL+L HPEW SG YWIDPNQGCT+DA+KV+C+ TGETC+ P +
Sbjct: 1271 SPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETGETCVYPNPAS 1330
Query: 915 IPAKNWYRN-SKVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLANHASQNIT 1091
+P KNW+ + SK KKH+W GETINGG F Y + + Q+ F+RLL+ SQNIT
Sbjct: 1331 VPKKNWWSSKSKDKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRLLSTEGSQNIT 1390
Query: 1092 YHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWRKTII 1271
YHCKNSIAY+DE GNLKKA+++QGSNDVE+ AEGNSRFTYTVL DGC+K T +W KT+I
Sbjct: 1391 YHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTVLKDGCTKHTGKWGKTMI 1450
Query: 1272 EYKTNKPSRLPILDIAPLDIGDADQEVSVDVGPVCF 1379
EY++ K SRLPI+DIAP+DIG +QE VD+GPVCF
Sbjct: 1451 EYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCF 1486
Score = 56.2 bits (134), Expect = 1e-07
Identities = 45/156 (28%), Positives = 52/156 (33%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
E G G PG GP G G AG +G+R GNRG
Sbjct: 466 EQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGAGPVGPPGERGAP------GNRG--- 516
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQX 410
G+ G KG PG++GP GL G KG NG G PG G G +
Sbjct: 517 ---------------FPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARG 561
Query: 411 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 518
+DGR G PG G G
Sbjct: 562 LTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARG 597
Score = 54.7 bits (130), Expect = 3e-07
Identities = 44/154 (28%), Positives = 53/154 (34%)
Frame = +3
Query: 57 GRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXX 236
G +GNPG GPPG G+ G KG R G +GE
Sbjct: 909 GSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGDPGLQGPAG------PPGEKGEPGDD 962
Query: 237 XXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXX 416
+GI G G+ G++G GLPG G G QG PG +G G
Sbjct: 963 GPSGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPP--- 1019
Query: 417 XXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 518
+ GR G PGA GP G
Sbjct: 1020 ------GPVGPPGLTGPSGEPGREGSPGADGPPG 1047
>ref|NP_001003090.1| alpha 1 type I collagen [Canis familiaris]
Length = 1460
Score = 408 bits (1048), Expect = e-113
Identities = 208/456 (45%), Positives = 266/456 (58%), Gaps = 13/456 (2%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
E+GR+G+PG++G PGRDG G KG+R K+G+RGE
Sbjct: 1007 ESGREGSPGAEGSPGRDGSPGPKGDRGETGPAGPPGAPGAPGAPGPVGPAGKNGDRGETG 1066
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQX 410
QG RG+KGE G++G RG+ G +G +GLQG PG G G+Q
Sbjct: 1067 PAGPAGPIGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQG 1126
Query: 411 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXX 590
KDG G PG +GP G R
Sbjct: 1127 PSGASGPAGPRGPPGSAGSPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPG 1186
Query: 591 XXXXXYDFGY-----------EGDFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLT 737
+DF + G +YRAD +R +D EVD TLKSL+ QIE + +
Sbjct: 1187 PPSGGFDFSFLPQPPQEKAHDGGRYYRADDANV---VRDRDLEVDTTLKSLSQQIENIRS 1243
Query: 738 PEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQPENI 917
PEGSRKNPARTCRDL++ H +W SG YWIDPNQGC +DAIKV+C+ TGETC+ +
Sbjct: 1244 PEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKVFCNMETGETCVYPTQPQV 1303
Query: 918 PAKNWY--RNSKVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLANHASQNIT 1091
KNWY +N K K+HVW GE++ G QFEY +G ++A QL F+RL++ ASQNIT
Sbjct: 1304 AQKNWYISKNPKEKRHVWYGESMTDGFQFEYGGQGSDPADVAIQLTFLRLMSTEASQNIT 1363
Query: 1092 YHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWRKTII 1271
YHCKNS+AYMD++TGNLKKA++LQGSN++E+ AEGNSRFTY+V DGC+ T W KT+I
Sbjct: 1364 YHCKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTYSVTYDGCTSHTGAWGKTVI 1423
Query: 1272 EYKTNKPSRLPILDIAPLDIGDADQEVSVDVGPVCF 1379
EYKT K SRLPI+D+APLD+G DQE +D+GPVCF
Sbjct: 1424 EYKTTKTSRLPIIDVAPLDVGAPDQEFGMDIGPVCF 1459
Score = 58.2 bits (139), Expect = 3e-08
Identities = 45/155 (29%), Positives = 51/155 (32%)
Frame = +3
Query: 54 AGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXX 233
AG+DG PG GPPG GQAG G K G RG
Sbjct: 555 AGQDGRPGPPGPPGARGQAGVMG---------------FPGPKGAAGEPGKAGERGVPGP 599
Query: 234 XXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXX 413
G G GE G++GP G PG +G G G PG AG G+Q
Sbjct: 600 PGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGV 659
Query: 414 XXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 518
+ G G PG GP G
Sbjct: 660 PGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRG 694
Score = 52.4 bits (124), Expect = 1e-06
Identities = 45/162 (27%), Positives = 52/162 (32%), Gaps = 6/162 (3%)
Frame = +3
Query: 57 GRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXX 236
G G PG+ GP G G G G K+G+ GE
Sbjct: 202 GEPGEPGASGPMGPRGPPGPPG---------------------------KNGDDGEAGK- 233
Query: 237 XXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPG------LKGHNGLQGLPGLAGHH 398
G GE+G PG +G RGLPG +KGH G GL G G
Sbjct: 234 -----------------PGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDA 276
Query: 399 GDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 524
G G G+PGA GPAG R
Sbjct: 277 GPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGAR 318
Score = 50.4 bits (119), Expect = 5e-06
Identities = 39/154 (25%), Positives = 48/154 (31%)
Frame = +3
Query: 57 GRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXX 236
G G+PG +G PG+ G G GER G G
Sbjct: 283 GEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFP 342
Query: 237 XXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXX 416
+G +G +GEPG GP G G G+ G G PG G +G
Sbjct: 343 GAVGAKGEAGPQGARGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIA 402
Query: 417 XXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 518
G G PGA GP+G
Sbjct: 403 ---------------------GAPGFPGARGPSG 415
>ref|XP_863148.1| PREDICTED: similar to Collagen alpha 1(III) chain precursor isoform
12 [Canis familiaris]
Length = 1466
Score = 368 bits (944), Expect = e-101
Identities = 201/459 (43%), Positives = 249/459 (54%), Gaps = 16/459 (3%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
E GRDGNPGSDG PGRDG G KG+R K G+RGE
Sbjct: 1010 EPGRDGNPGSDGLPGRDGAPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGETG 1069
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQX 410
QG RG+KGE G++G G+ G +G G G PG G G Q
Sbjct: 1070 PAGPSGAPGPAGSRGPPGPQGPRGDKGETGERGLNGIKGHRGFPGNPGAPGSPGPAGHQG 1129
Query: 411 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXX--- 581
KDG +G PG +GP G R
Sbjct: 1130 AIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPG 1189
Query: 582 ----------XXXXXXXXYDFGYEGDF--YRADQPRSPPSLRPKDYEVDATLKSLNNQIE 725
G F Y D+P + E+ +LKS++ QIE
Sbjct: 1190 PPGAPGPCCGGGAAALAAAGGEKAGGFAPYYGDEPMD---FKINTEEIMTSLKSVSGQIE 1246
Query: 726 TLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQ 905
+L++P+GSRK+PAR CRDL+ HPE SG YW+DPNQGC +DAIKV+C+ TGETC+ A
Sbjct: 1247 SLVSPDGSRKHPARNCRDLKFCHPELKSGEYWVDPNQGCKLDAIKVFCNMETGETCLNAS 1306
Query: 906 PENIPAKNWYRNSKV-KKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLANHASQ 1082
P ++P KNW+ +S KKHVW GE+++GG QF Y + + QLAF+RLL++ ASQ
Sbjct: 1307 PGSVPRKNWWTDSGAEKKHVWFGESMDGGFQFGYGNPELPEDVLDVQLAFLRLLSSRASQ 1366
Query: 1083 NITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWRK 1262
NITYHCKNSIAYMD +GN+KKA+ L GSN+ E AEGNS+FTYTVL DGC+K T EW K
Sbjct: 1367 NITYHCKNSIAYMDHASGNVKKALRLMGSNEGEFKAEGNSKFTYTVLEDGCTKHTGEWGK 1426
Query: 1263 TIIEYKTNKPSRLPILDIAPLDIGDADQEVSVDVGPVCF 1379
T+ EY+T K RLPI+DIAP D+G DQE VDVGPVCF
Sbjct: 1427 TVFEYRTRKAVRLPIIDIAPYDVGGPDQEFGVDVGPVCF 1465
Score = 50.8 bits (120), Expect = 4e-06
Identities = 41/158 (25%), Positives = 48/158 (30%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
E+GR G PG GP G+ G G G + K+G G
Sbjct: 560 ESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPAGKNGETGPQG 619
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQX 410
QG++G G G G G PG G G G PG+ G GD
Sbjct: 620 PPGPTGPAGDKGDAGPPGPQGLQGLPGTSGPPGENGKPGEPGPKGESGSPGVPGGKGDSG 679
Query: 411 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 524
G G PGA GP G R
Sbjct: 680 A---------------------PGERGPPGAAGPMGPR 696
>ref|XP_863124.1| PREDICTED: similar to Collagen alpha 1(III) chain precursor isoform
11 [Canis familiaris]
Length = 1450
Score = 368 bits (944), Expect = e-101
Identities = 201/459 (43%), Positives = 249/459 (54%), Gaps = 16/459 (3%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
E GRDGNPGSDG PGRDG G KG+R K G+RGE
Sbjct: 994 EPGRDGNPGSDGLPGRDGAPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGETG 1053
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQX 410
QG RG+KGE G++G G+ G +G G G PG G G Q
Sbjct: 1054 PAGPSGAPGPAGSRGPPGPQGPRGDKGETGERGLNGIKGHRGFPGNPGAPGSPGPAGHQG 1113
Query: 411 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXX--- 581
KDG +G PG +GP G R
Sbjct: 1114 AIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPG 1173
Query: 582 ----------XXXXXXXXYDFGYEGDF--YRADQPRSPPSLRPKDYEVDATLKSLNNQIE 725
G F Y D+P + E+ +LKS++ QIE
Sbjct: 1174 PPGAPGPCCGGGAAALAAAGGEKAGGFAPYYGDEPMD---FKINTEEIMTSLKSVSGQIE 1230
Query: 726 TLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQ 905
+L++P+GSRK+PAR CRDL+ HPE SG YW+DPNQGC +DAIKV+C+ TGETC+ A
Sbjct: 1231 SLVSPDGSRKHPARNCRDLKFCHPELKSGEYWVDPNQGCKLDAIKVFCNMETGETCLNAS 1290
Query: 906 PENIPAKNWYRNSKV-KKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLANHASQ 1082
P ++P KNW+ +S KKHVW GE+++GG QF Y + + QLAF+RLL++ ASQ
Sbjct: 1291 PGSVPRKNWWTDSGAEKKHVWFGESMDGGFQFGYGNPELPEDVLDVQLAFLRLLSSRASQ 1350
Query: 1083 NITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWRK 1262
NITYHCKNSIAYMD +GN+KKA+ L GSN+ E AEGNS+FTYTVL DGC+K T EW K
Sbjct: 1351 NITYHCKNSIAYMDHASGNVKKALRLMGSNEGEFKAEGNSKFTYTVLEDGCTKHTGEWGK 1410
Query: 1263 TIIEYKTNKPSRLPILDIAPLDIGDADQEVSVDVGPVCF 1379
T+ EY+T K RLPI+DIAP D+G DQE VDVGPVCF
Sbjct: 1411 TVFEYRTRKAVRLPIIDIAPYDVGGPDQEFGVDVGPVCF 1449
Score = 50.8 bits (120), Expect = 4e-06
Identities = 41/158 (25%), Positives = 48/158 (30%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
E+GR G PG GP G+ G G G + K+G G
Sbjct: 544 ESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPAGKNGETGPQG 603
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQX 410
QG++G G G G G PG G G G PG+ G GD
Sbjct: 604 PPGPTGPAGDKGDAGPPGPQGLQGLPGTSGPPGENGKPGEPGPKGESGSPGVPGGKGDSG 663
Query: 411 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 524
G G PGA GP G R
Sbjct: 664 A---------------------PGERGPPGAAGPMGPR 680
>ref|XP_863103.1| PREDICTED: similar to Collagen alpha 1(III) chain precursor isoform
10 [Canis familiaris]
Length = 1456
Score = 368 bits (944), Expect = e-101
Identities = 201/459 (43%), Positives = 249/459 (54%), Gaps = 16/459 (3%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
E GRDGNPGSDG PGRDG G KG+R K G+RGE
Sbjct: 1000 EPGRDGNPGSDGLPGRDGAPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGETG 1059
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQX 410
QG RG+KGE G++G G+ G +G G G PG G G Q
Sbjct: 1060 PAGPSGAPGPAGSRGPPGPQGPRGDKGETGERGLNGIKGHRGFPGNPGAPGSPGPAGHQG 1119
Query: 411 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXX--- 581
KDG +G PG +GP G R
Sbjct: 1120 AIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPG 1179
Query: 582 ----------XXXXXXXXYDFGYEGDF--YRADQPRSPPSLRPKDYEVDATLKSLNNQIE 725
G F Y D+P + E+ +LKS++ QIE
Sbjct: 1180 PPGAPGPCCGGGAAALAAAGGEKAGGFAPYYGDEPMD---FKINTEEIMTSLKSVSGQIE 1236
Query: 726 TLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQ 905
+L++P+GSRK+PAR CRDL+ HPE SG YW+DPNQGC +DAIKV+C+ TGETC+ A
Sbjct: 1237 SLVSPDGSRKHPARNCRDLKFCHPELKSGEYWVDPNQGCKLDAIKVFCNMETGETCLNAS 1296
Query: 906 PENIPAKNWYRNSKV-KKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLANHASQ 1082
P ++P KNW+ +S KKHVW GE+++GG QF Y + + QLAF+RLL++ ASQ
Sbjct: 1297 PGSVPRKNWWTDSGAEKKHVWFGESMDGGFQFGYGNPELPEDVLDVQLAFLRLLSSRASQ 1356
Query: 1083 NITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWRK 1262
NITYHCKNSIAYMD +GN+KKA+ L GSN+ E AEGNS+FTYTVL DGC+K T EW K
Sbjct: 1357 NITYHCKNSIAYMDHASGNVKKALRLMGSNEGEFKAEGNSKFTYTVLEDGCTKHTGEWGK 1416
Query: 1263 TIIEYKTNKPSRLPILDIAPLDIGDADQEVSVDVGPVCF 1379
T+ EY+T K RLPI+DIAP D+G DQE VDVGPVCF
Sbjct: 1417 TVFEYRTRKAVRLPIIDIAPYDVGGPDQEFGVDVGPVCF 1455
Score = 50.8 bits (120), Expect = 4e-06
Identities = 41/158 (25%), Positives = 48/158 (30%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
E+GR G PG GP G+ G G G + K+G G
Sbjct: 559 ESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPAGKNGETGPQG 618
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQX 410
QG++G G G G G PG G G G PG+ G GD
Sbjct: 619 PPGPTGPAGDKGDAGPPGPQGLQGLPGTSGPPGENGKPGEPGPKGESGSPGVPGGKGDSG 678
Query: 411 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 524
G G PGA GP G R
Sbjct: 679 A---------------------PGERGPPGAAGPMGPR 695
>ref|XP_863049.1| PREDICTED: similar to Collagen alpha 1(III) chain precursor isoform 9
[Canis familiaris]
Length = 1062
Score = 368 bits (944), Expect = e-101
Identities = 201/459 (43%), Positives = 249/459 (54%), Gaps = 16/459 (3%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
E GRDGNPGSDG PGRDG G KG+R K G+RGE
Sbjct: 606 EPGRDGNPGSDGLPGRDGAPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGETG 665
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQX 410
QG RG+KGE G++G G+ G +G G G PG G G Q
Sbjct: 666 PAGPSGAPGPAGSRGPPGPQGPRGDKGETGERGLNGIKGHRGFPGNPGAPGSPGPAGHQG 725
Query: 411 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXX--- 581
KDG +G PG +GP G R
Sbjct: 726 AIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPG 785
Query: 582 ----------XXXXXXXXYDFGYEGDF--YRADQPRSPPSLRPKDYEVDATLKSLNNQIE 725
G F Y D+P + E+ +LKS++ QIE
Sbjct: 786 PPGAPGPCCGGGAAALAAAGGEKAGGFAPYYGDEPMD---FKINTEEIMTSLKSVSGQIE 842
Query: 726 TLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQ 905
+L++P+GSRK+PAR CRDL+ HPE SG YW+DPNQGC +DAIKV+C+ TGETC+ A
Sbjct: 843 SLVSPDGSRKHPARNCRDLKFCHPELKSGEYWVDPNQGCKLDAIKVFCNMETGETCLNAS 902
Query: 906 PENIPAKNWYRNSKV-KKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLANHASQ 1082
P ++P KNW+ +S KKHVW GE+++GG QF Y + + QLAF+RLL++ ASQ
Sbjct: 903 PGSVPRKNWWTDSGAEKKHVWFGESMDGGFQFGYGNPELPEDVLDVQLAFLRLLSSRASQ 962
Query: 1083 NITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWRK 1262
NITYHCKNSIAYMD +GN+KKA+ L GSN+ E AEGNS+FTYTVL DGC+K T EW K
Sbjct: 963 NITYHCKNSIAYMDHASGNVKKALRLMGSNEGEFKAEGNSKFTYTVLEDGCTKHTGEWGK 1022
Query: 1263 TIIEYKTNKPSRLPILDIAPLDIGDADQEVSVDVGPVCF 1379
T+ EY+T K RLPI+DIAP D+G DQE VDVGPVCF
Sbjct: 1023 TVFEYRTRKAVRLPIIDIAPYDVGGPDQEFGVDVGPVCF 1061
>ref|XP_851009.1| PREDICTED: similar to Collagen alpha 1(III) chain precursor isoform 2
[Canis familiaris]
Length = 1465
Score = 368 bits (944), Expect = e-101
Identities = 201/459 (43%), Positives = 249/459 (54%), Gaps = 16/459 (3%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
E GRDGNPGSDG PGRDG G KG+R K G+RGE
Sbjct: 1009 EPGRDGNPGSDGLPGRDGAPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGETG 1068
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQX 410
QG RG+KGE G++G G+ G +G G G PG G G Q
Sbjct: 1069 PAGPSGAPGPAGSRGPPGPQGPRGDKGETGERGLNGIKGHRGFPGNPGAPGSPGPAGHQG 1128
Query: 411 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXX--- 581
KDG +G PG +GP G R
Sbjct: 1129 AIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPG 1188
Query: 582 ----------XXXXXXXXYDFGYEGDF--YRADQPRSPPSLRPKDYEVDATLKSLNNQIE 725
G F Y D+P + E+ +LKS++ QIE
Sbjct: 1189 PPGAPGPCCGGGAAALAAAGGEKAGGFAPYYGDEPMD---FKINTEEIMTSLKSVSGQIE 1245
Query: 726 TLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQ 905
+L++P+GSRK+PAR CRDL+ HPE SG YW+DPNQGC +DAIKV+C+ TGETC+ A
Sbjct: 1246 SLVSPDGSRKHPARNCRDLKFCHPELKSGEYWVDPNQGCKLDAIKVFCNMETGETCLNAS 1305
Query: 906 PENIPAKNWYRNSKV-KKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLANHASQ 1082
P ++P KNW+ +S KKHVW GE+++GG QF Y + + QLAF+RLL++ ASQ
Sbjct: 1306 PGSVPRKNWWTDSGAEKKHVWFGESMDGGFQFGYGNPELPEDVLDVQLAFLRLLSSRASQ 1365
Query: 1083 NITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWRK 1262
NITYHCKNSIAYMD +GN+KKA+ L GSN+ E AEGNS+FTYTVL DGC+K T EW K
Sbjct: 1366 NITYHCKNSIAYMDHASGNVKKALRLMGSNEGEFKAEGNSKFTYTVLEDGCTKHTGEWGK 1425
Query: 1263 TIIEYKTNKPSRLPILDIAPLDIGDADQEVSVDVGPVCF 1379
T+ EY+T K RLPI+DIAP D+G DQE VDVGPVCF
Sbjct: 1426 TVFEYRTRKAVRLPIIDIAPYDVGGPDQEFGVDVGPVCF 1464
Score = 50.8 bits (120), Expect = 4e-06
Identities = 41/158 (25%), Positives = 48/158 (30%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
E+GR G PG GP G+ G G G + K+G G
Sbjct: 559 ESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPAGKNGETGPQG 618
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQX 410
QG++G G G G G PG G G G PG+ G GD
Sbjct: 619 PPGPTGPAGDKGDAGPPGPQGLQGLPGTSGPPGENGKPGEPGPKGESGSPGVPGGKGDSG 678
Query: 411 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 524
G G PGA GP G R
Sbjct: 679 A---------------------PGERGPPGAAGPMGPR 695
>ref|XP_535997.2| PREDICTED: similar to Collagen alpha 1(III) chain precursor isoform 1
[Canis familiaris]
Length = 1244
Score = 343 bits (879), Expect = 4e-94
Identities = 192/457 (42%), Positives = 239/457 (52%), Gaps = 16/457 (3%)
Frame = +3
Query: 57 GRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXX 236
G G PG GPPG G AG G+R G++GE
Sbjct: 820 GAPGAPGHPGPPGPVGPAGKSGDRGETGPAGPSGAPGPAGSRGPPGPQGPRGDKGETGER 879
Query: 237 XXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXX 416
GI+G +G PG+ G G PG GH G G PG AG G
Sbjct: 880 GL---------------NGIKGHRGFPGNPGAPGSPGPAGHQGAIGSPGPAGPRGP---- 920
Query: 417 XXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXX----- 581
KDG +G PG +GP G R
Sbjct: 921 -----------VGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPP 969
Query: 582 --------XXXXXXXXYDFGYEGDF--YRADQPRSPPSLRPKDYEVDATLKSLNNQIETL 731
G F Y D+P + E+ +LKS++ QIE+L
Sbjct: 970 GAPGPCCGGGAAALAAAGGEKAGGFAPYYGDEPMD---FKINTEEIMTSLKSVSGQIESL 1026
Query: 732 LTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQPE 911
++P+GSRK+PAR CRDL+ HPE SG YW+DPNQGC +DAIKV+C+ TGETC+ A P
Sbjct: 1027 VSPDGSRKHPARNCRDLKFCHPELKSGEYWVDPNQGCKLDAIKVFCNMETGETCLNASPG 1086
Query: 912 NIPAKNWYRNSKV-KKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLANHASQNI 1088
++P KNW+ +S KKHVW GE+++GG QF Y + + QLAF+RLL++ ASQNI
Sbjct: 1087 SVPRKNWWTDSGAEKKHVWFGESMDGGFQFGYGNPELPEDVLDVQLAFLRLLSSRASQNI 1146
Query: 1089 TYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWRKTI 1268
TYHCKNSIAYMD +GN+KKA+ L GSN+ E AEGNS+FTYTVL DGC+K T EW KT+
Sbjct: 1147 TYHCKNSIAYMDHASGNVKKALRLMGSNEGEFKAEGNSKFTYTVLEDGCTKHTGEWGKTV 1206
Query: 1269 IEYKTNKPSRLPILDIAPLDIGDADQEVSVDVGPVCF 1379
EY+T K RLPI+DIAP D+G DQE VDVGPVCF
Sbjct: 1207 FEYRTRKAVRLPIIDIAPYDVGGPDQEFGVDVGPVCF 1243
Score = 52.4 bits (124), Expect = 1e-06
Identities = 44/155 (28%), Positives = 49/155 (31%)
Frame = +3
Query: 54 AGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXX 233
AG G PGS G PG G G +G G++GE
Sbjct: 710 AGPPGPPGSAGTPGLQGMPGERG---------------------GPGGPGPKGDKGEPGS 748
Query: 234 XXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXX 413
G G G+PGDKG G PGL G G +G PG G HG
Sbjct: 749 AGADGAPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGGPGERGEHGPPGP 808
Query: 414 XXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 518
G G PG VGPAG
Sbjct: 809 AGFPGAPNGSPGAPGA-----PGHPGPPGPVGPAG 838
Score = 50.8 bits (120), Expect = 4e-06
Identities = 41/158 (25%), Positives = 48/158 (30%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
E+GR G PG GP G+ G G G + K+G G
Sbjct: 559 ESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPAGKNGETGPQG 618
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQX 410
QG++G G G G G PG G G G PG+ G GD
Sbjct: 619 PPGPTGPAGDKGDAGPPGPQGLQGLPGTSGPPGENGKPGEPGPKGESGSPGVPGGKGDSG 678
Query: 411 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 524
G G PGA GP G R
Sbjct: 679 A---------------------PGERGPPGAAGPMGPR 695
>ref|XP_863024.1| PREDICTED: similar to Collagen alpha 1(III) chain precursor isoform 8
[Canis familiaris]
Length = 645
Score = 334 bits (857), Expect = 1e-91
Identities = 191/471 (40%), Positives = 238/471 (50%), Gaps = 28/471 (5%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
E G G+PG GP G DG+ G GE G GE
Sbjct: 177 ERGEAGSPGIPGPKGEDGKDGSPGEPGANGLPGAAGERGPAGERGGPGPAGPRGAPGEPG 236
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRG---LPGLKGHNGLQGLPGLAGHHG 401
+G+ G G GD+G G PG GH G G G AG G
Sbjct: 237 RDGVPGGPGMRGAAGFPGGRGLPGPPGNNGDRGENGSPGAPGAPGHPGPPGPVGPAGKSG 296
Query: 402 DQXXXXXXXXXXXXXXXXXXXXXX---------KDGRTGQPGAVGPAGIRXXXXXXXXXX 554
D+ KDG +G PG +GP G R
Sbjct: 297 DRGETGPAGHQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEG 356
Query: 555 XXXXXXXXX-------------XXXXXXXXYDFGYEGDF--YRADQPRSPPSLRPKDYEV 689
G F Y D+P + E+
Sbjct: 357 SPGHPGQPGPPGPPGAPGPCCGGGAAALAAAGGEKAGGFAPYYGDEPMD---FKINTEEI 413
Query: 690 DATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYC 869
+LKS++ QIE+L++P+GSRK+PAR CRDL+ HPE SG YW+DPNQGC +DAIKV+C
Sbjct: 414 MTSLKSVSGQIESLVSPDGSRKHPARNCRDLKFCHPELKSGEYWVDPNQGCKLDAIKVFC 473
Query: 870 DFSTGETCIRAQPENIPAKNWYRNSKV-KKHVWLGETINGGTQFEYNMEGVTTKEMATQL 1046
+ TGETC+ A P ++P KNW+ +S KKHVW GE+++GG QF Y + + QL
Sbjct: 474 NMETGETCLNASPGSVPRKNWWTDSGAEKKHVWFGESMDGGFQFGYGNPELPEDVLDVQL 533
Query: 1047 AFMRLLANHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLV 1226
AF+RLL++ ASQNITYHCKNSIAYMD +GN+KKA+ L GSN+ E AEGNS+FTYTVL
Sbjct: 534 AFLRLLSSRASQNITYHCKNSIAYMDHASGNVKKALRLMGSNEGEFKAEGNSKFTYTVLE 593
Query: 1227 DGCSKKTNEWRKTIIEYKTNKPSRLPILDIAPLDIGDADQEVSVDVGPVCF 1379
DGC+K T EW KT+ EY+T K RLPI+DIAP D+G DQE VDVGPVCF
Sbjct: 594 DGCTKHTGEWGKTVFEYRTRKAVRLPIIDIAPYDVGGPDQEFGVDVGPVCF 644
Score = 62.0 bits (149), Expect = 2e-09
Identities = 45/157 (28%), Positives = 53/157 (33%), Gaps = 3/157 (1%)
Frame = +3
Query: 57 GRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXX 236
G G PG GPPG +G G KGE G +GE
Sbjct: 137 GHAGAPGPPGPPGSNGSPGGKGEMGEPGKNGAKGEPGPRGERGEAGSPGIPGPKGEDGKD 196
Query: 237 XXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL---AGHHGDQ 407
+G GE+G PG GPRG PG G +G+ G PG+ AG G +
Sbjct: 197 GSPGEPGANGLPGAAGERGPAGERGGPGPAGPRGAPGEPGRDGVPGGPGMRGAAGFPGGR 256
Query: 408 XXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 518
G G PG VGPAG
Sbjct: 257 GLPGPPGNNGDRGENGSPGAPGAPGHPGPPGPVGPAG 293
Database: RefSeqCP
Posted date: Aug 1, 2006 9:25 PM
Number of letters in database: 19,266,565
Number of sequences in database: 33,732
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,587,621
Number of Sequences: 33732
Number of extensions: 1084609
Number of successful extensions: 14900
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 3252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8756
length of database: 19,266,565
effective HSP length: 108
effective length of database: 15,623,509
effective search space used: 7264931685
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0179_G10
(1723 letters)
Database: RefSeqHP
39,411 sequences; 17,774,539 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000080.2| alpha 2 type I collagen [Homo sapiens] 657 0.0
Alignment gi|NP_001835.2| alpha 1 type II collagen isoform 1 [Homo sapiens] 426 e-119
Alignment gi|NP_149162.1| alpha 1 type II collagen isoform 2, preproprote... 426 e-119
Alignment gi|NP_000079.1| alpha 1 type I collagen preproprotein [Homo sap... 404 e-112
Alignment gi|NP_000081.1| collagen, type III, alpha 1 preproprotein [Homo... 377 e-104
Alignment gi|NP_000384.2| alpha 2 type V collagen preproprotein [Homo sap... 323 4e-88
Alignment gi|NP_542196.2| alpha 1 type XI collagen isoform B preproprotei... 201 2e-51
Alignment gi|NP_542197.2| alpha 1 type XI collagen isoform C preproprotei... 201 2e-51
Alignment gi|NP_001845.3| alpha 1 type XI collagen isoform A preproprotei... 201 2e-51
Alignment gi|NP_000084.3| alpha 1 type V collagen preproprotein [Homo sap... 190 4e-48
>ref|NP_000080.2| alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 657 bits (1696), Expect = 0.0
Identities = 327/444 (73%), Positives = 338/444 (76%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
EAGRDGNPG+DGPPGRDGQ GHKGER KHGNRGE
Sbjct: 923 EAGRDGNPGNDGPPGRDGQPGHKGERGYPGNIGPVGAAGAPGPHGPVGPAGKHGNRGETG 982
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQX 410
QGIRG+KGEPG+KGPRGLPGLKGHNGLQGLPG+AGHHGDQ
Sbjct: 983 PSGPVGPAGAVGPRGPSGPQGIRGDKGEPGEKGPRGLPGLKGHNGLQGLPGIAGHHGDQG 1042
Query: 411 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXX 590
KDGRTG PG VGPAGIR
Sbjct: 1043 APGSVGPAGPRGPAGPSGPAGKDGRTGHPGTVGPAGIRGPQGHQGPAGPPGPPGPPGPPG 1102
Query: 591 XXXXXYDFGYEGDFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPART 770
YDFGY+GDFYRADQPRS PSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPART
Sbjct: 1103 VSGGGYDFGYDGDFYRADQPRSAPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPART 1162
Query: 771 CRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQPENIPAKNWYRNSKV 950
CRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQPENIPAKNWYR+SK
Sbjct: 1163 CRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQPENIPAKNWYRSSKD 1222
Query: 951 KKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLANHASQNITYHCKNSIAYMDEE 1130
KKHVWLGETIN G+QFEYN+EGVT+KEMATQLAFMRLLAN+ASQNITYHCKNSIAYMDEE
Sbjct: 1223 KKHVWLGETINAGSQFEYNVEGVTSKEMATQLAFMRLLANYASQNITYHCKNSIAYMDEE 1282
Query: 1131 TGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWRKTIIEYKTNKPSRLPIL 1310
TGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEW KTIIEYKTNKPSRLP L
Sbjct: 1283 TGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWGKTIIEYKTNKPSRLPFL 1342
Query: 1311 DIAPLDIGDADQEVSVDVGPVCFK 1382
DIAPLDIG ADQE VD+GPVCFK
Sbjct: 1343 DIAPLDIGGADQEFFVDIGPVCFK 1366
Score = 53.9 bits (128), Expect = 4e-07
Identities = 44/156 (28%), Positives = 52/156 (33%)
Frame = +3
Query: 54 AGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXX 233
AG G PG G PG G AG G R G++GE
Sbjct: 318 AGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPA------------------GSKGESGN 359
Query: 234 XXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXX 413
+G RG GE G GP G PGL+G G +GLPG G G
Sbjct: 360 KGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGLPGADGRAGVMGP 419
Query: 414 XXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 521
GR G+PG +GP G+
Sbjct: 420 PGSRGASGPAGVRGPNGDA---GRPGEPGLMGPRGL 452
>ref|NP_001835.2| alpha 1 type II collagen isoform 1 [Homo sapiens]
Length = 1487
Score = 426 bits (1094), Expect = e-119
Identities = 223/456 (48%), Positives = 266/456 (58%), Gaps = 13/456 (2%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
E GR+G+PG+DGPPGRDG AG KG+R K G+RGE
Sbjct: 1033 EPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAG 1092
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQX 410
QG RG+KGE G+ G RGL G +G GLQGLPG G GDQ
Sbjct: 1093 AQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQG 1152
Query: 411 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXX 590
KDG G PG +GP G R
Sbjct: 1153 ASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPG 1212
Query: 591 XXXXXYDFG-YEG-----------DFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLL 734
D + G + RADQ LR D EVDATLKSLNNQIE++
Sbjct: 1213 PPGPGIDMSAFAGLGPREKGPDPLQYMRADQAAG--GLRQHDAEVDATLKSLNNQIESIR 1270
Query: 735 TPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQPEN 914
+PEGSRKNPARTCRDL+L HPEW SG YWIDPNQGCT+DA+KV+C+ TGETC+ P N
Sbjct: 1271 SPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETGETCVYPNPAN 1330
Query: 915 IPAKNWYRN-SKVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLANHASQNIT 1091
+P KNW+ + SK KKH+W GETINGG F Y + + Q+ F+RLL+ SQNIT
Sbjct: 1331 VPKKNWWSSKSKEKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRLLSTEGSQNIT 1390
Query: 1092 YHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWRKTII 1271
YHCKNSIAY+DE GNLKKA+++QGSNDVE+ AEGNSRFTYT L DGC+K T +W KT+I
Sbjct: 1391 YHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTALKDGCTKHTGKWGKTVI 1450
Query: 1272 EYKTNKPSRLPILDIAPLDIGDADQEVSVDVGPVCF 1379
EY++ K SRLPI+DIAP+DIG +QE VD+GPVCF
Sbjct: 1451 EYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCF 1486
Score = 55.8 bits (133), Expect = 1e-07
Identities = 45/156 (28%), Positives = 52/156 (33%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
E G G PG GP G G AG +G+R GNRG
Sbjct: 466 EQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAP------GNRG--- 516
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQX 410
G+ G KG PG++GP GL G KG NG G PG G G +
Sbjct: 517 ---------------FPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARG 561
Query: 411 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 518
+DGR G PG G G
Sbjct: 562 LTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARG 597
Score = 55.8 bits (133), Expect = 1e-07
Identities = 44/160 (27%), Positives = 49/160 (30%), Gaps = 6/160 (3%)
Frame = +3
Query: 57 GRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXX 236
G DG PG GPPG G AG G + G G
Sbjct: 345 GNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPA 404
Query: 237 XXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNG------LQGLPGLAGHH 398
G G G PG GPRG PG +G G G PG+AG
Sbjct: 405 GASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFK 464
Query: 399 GDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 518
G+Q K G G+PG VGP G
Sbjct: 465 GEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIG 504
Score = 55.5 bits (132), Expect = 1e-07
Identities = 44/154 (28%), Positives = 53/154 (34%)
Frame = +3
Query: 57 GRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXX 236
G +GNPG GPPG G+ G KG R G +GE
Sbjct: 909 GSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAG------PPGEKGEPGDD 962
Query: 237 XXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXX 416
+GI G G+ G++G GLPG G G QG PG +G G
Sbjct: 963 GPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPP--- 1019
Query: 417 XXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 518
+ GR G PGA GP G
Sbjct: 1020 ------GPVGPPGLTGPAGEPGREGSPGADGPPG 1047
>ref|NP_149162.1| alpha 1 type II collagen isoform 2, preproprotein [Homo sapiens]
Length = 1418
Score = 426 bits (1094), Expect = e-119
Identities = 223/456 (48%), Positives = 266/456 (58%), Gaps = 13/456 (2%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
E GR+G+PG+DGPPGRDG AG KG+R K G+RGE
Sbjct: 964 EPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAG 1023
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQX 410
QG RG+KGE G+ G RGL G +G GLQGLPG G GDQ
Sbjct: 1024 AQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQG 1083
Query: 411 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXX 590
KDG G PG +GP G R
Sbjct: 1084 ASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPG 1143
Query: 591 XXXXXYDFG-YEG-----------DFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLL 734
D + G + RADQ LR D EVDATLKSLNNQIE++
Sbjct: 1144 PPGPGIDMSAFAGLGPREKGPDPLQYMRADQAAG--GLRQHDAEVDATLKSLNNQIESIR 1201
Query: 735 TPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQPEN 914
+PEGSRKNPARTCRDL+L HPEW SG YWIDPNQGCT+DA+KV+C+ TGETC+ P N
Sbjct: 1202 SPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETGETCVYPNPAN 1261
Query: 915 IPAKNWYRN-SKVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLANHASQNIT 1091
+P KNW+ + SK KKH+W GETINGG F Y + + Q+ F+RLL+ SQNIT
Sbjct: 1262 VPKKNWWSSKSKEKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRLLSTEGSQNIT 1321
Query: 1092 YHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWRKTII 1271
YHCKNSIAY+DE GNLKKA+++QGSNDVE+ AEGNSRFTYT L DGC+K T +W KT+I
Sbjct: 1322 YHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTALKDGCTKHTGKWGKTVI 1381
Query: 1272 EYKTNKPSRLPILDIAPLDIGDADQEVSVDVGPVCF 1379
EY++ K SRLPI+DIAP+DIG +QE VD+GPVCF
Sbjct: 1382 EYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCF 1417
Score = 55.8 bits (133), Expect = 1e-07
Identities = 45/156 (28%), Positives = 52/156 (33%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
E G G PG GP G G AG +G+R GNRG
Sbjct: 397 EQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAP------GNRG--- 447
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQX 410
G+ G KG PG++GP GL G KG NG G PG G G +
Sbjct: 448 ---------------FPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARG 492
Query: 411 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 518
+DGR G PG G G
Sbjct: 493 LTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARG 528
Score = 55.8 bits (133), Expect = 1e-07
Identities = 44/160 (27%), Positives = 49/160 (30%), Gaps = 6/160 (3%)
Frame = +3
Query: 57 GRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXX 236
G DG PG GPPG G AG G + G G
Sbjct: 276 GNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPA 335
Query: 237 XXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNG------LQGLPGLAGHH 398
G G G PG GPRG PG +G G G PG+AG
Sbjct: 336 GASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFK 395
Query: 399 GDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 518
G+Q K G G+PG VGP G
Sbjct: 396 GEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIG 435
Score = 55.5 bits (132), Expect = 1e-07
Identities = 44/154 (28%), Positives = 53/154 (34%)
Frame = +3
Query: 57 GRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXX 236
G +GNPG GPPG G+ G KG R G +GE
Sbjct: 840 GSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAG------PPGEKGEPGDD 893
Query: 237 XXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXX 416
+GI G G+ G++G GLPG G G QG PG +G G
Sbjct: 894 GPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPP--- 950
Query: 417 XXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 518
+ GR G PGA GP G
Sbjct: 951 ------GPVGPPGLTGPAGEPGREGSPGADGPPG 978
>ref|NP_000079.1| alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 404 bits (1039), Expect = e-112
Identities = 208/456 (45%), Positives = 264/456 (57%), Gaps = 13/456 (2%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
E+GR+G P ++G PGRDG G KG+R K G+RGE
Sbjct: 1011 ESGREGAPAAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETG 1070
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQX 410
QG RG+KGE G++G RG+ G +G +GLQG PG G G+Q
Sbjct: 1071 PAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQG 1130
Query: 411 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXX 590
KDG G PG +GP G R
Sbjct: 1131 PSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPG 1190
Query: 591 XXXXXYDFGY-----------EGDFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLT 737
+DF + G +YRAD +R +D EVD TLKSL+ QIE + +
Sbjct: 1191 PPSAGFDFSFLPQPPQEKAHDGGRYYRADDANV---VRDRDLEVDTTLKSLSQQIENIRS 1247
Query: 738 PEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQPENI 917
PEGSRKNPARTCRDL++ H +W SG YWIDPNQGC +DAIKV+C+ TGETC+ ++
Sbjct: 1248 PEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKVFCNMETGETCVYPTQPSV 1307
Query: 918 PAKNWY--RNSKVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLANHASQNIT 1091
KNWY +N K K+HVW GE++ G QFEY +G ++A QL F+RL++ ASQNIT
Sbjct: 1308 AQKNWYISKNPKDKRHVWFGESMTDGFQFEYGGQGSDPADVAIQLTFLRLMSTEASQNIT 1367
Query: 1092 YHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWRKTII 1271
YHCKNS+AYMD++TGNLKKA++L+GSN++E+ AEGNSRFTY+V VDGC+ T W KT+I
Sbjct: 1368 YHCKNSVAYMDQQTGNLKKALLLKGSNEIEIRAEGNSRFTYSVTVDGCTSHTGAWGKTVI 1427
Query: 1272 EYKTNKPSRLPILDIAPLDIGDADQEVSVDVGPVCF 1379
EYKT K SRLPI+D+APLD+G DQE DVGPVCF
Sbjct: 1428 EYKTTKSSRLPIIDVAPLDVGAPDQEFGFDVGPVCF 1463
Score = 58.2 bits (139), Expect = 2e-08
Identities = 45/155 (29%), Positives = 51/155 (32%)
Frame = +3
Query: 54 AGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXX 233
AG+DG PG GPPG GQAG G K G RG
Sbjct: 559 AGQDGRPGPPGPPGARGQAGVMG---------------FPGPKGAAGEPGKAGERGVPGP 603
Query: 234 XXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXX 413
G G GE G++GP G PG +G G G PG AG G+Q
Sbjct: 604 PGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGV 663
Query: 414 XXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 518
+ G G PG GP G
Sbjct: 664 PGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRG 698
Score = 52.4 bits (124), Expect = 1e-06
Identities = 45/162 (27%), Positives = 52/162 (32%), Gaps = 6/162 (3%)
Frame = +3
Query: 57 GRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXX 236
G G PG+ GP G G G G K+G+ GE
Sbjct: 206 GEPGEPGASGPMGPRGPPGPPG---------------------------KNGDDGEAGK- 237
Query: 237 XXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPG------LKGHNGLQGLPGLAGHH 398
G GE+G PG +G RGLPG +KGH G GL G G
Sbjct: 238 -----------------PGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDA 280
Query: 399 GDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 524
G G G+PGA GPAG R
Sbjct: 281 GPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGAR 322
Score = 51.2 bits (121), Expect = 3e-06
Identities = 37/154 (24%), Positives = 47/154 (30%)
Frame = +3
Query: 57 GRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXX 236
G++G+ G G PGR G+ G G + G+ G
Sbjct: 227 GKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPK 286
Query: 237 XXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXX 416
+G+ GE+G PG GP G G G G G PG G G
Sbjct: 287 GEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFP 346
Query: 417 XXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 518
G G+PG GPAG
Sbjct: 347 GAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAG 380
>ref|NP_000081.1| collagen, type III, alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 377 bits (968), Expect = e-104
Identities = 207/460 (45%), Positives = 252/460 (54%), Gaps = 17/460 (3%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
E GRDGNPGSDG PGRDG G KG+R K G+RGE
Sbjct: 1009 EPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESG 1068
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQX 410
QG RG+KGE G++G G+ G +G G G PG G G Q
Sbjct: 1069 PAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQG 1128
Query: 411 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXX--- 581
KDG +G PG +GP G R
Sbjct: 1129 AIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPG 1188
Query: 582 ---------XXXXXXXXYDFGYE--GDF--YRADQPRSPPSLRPKDYEVDATLKSLNNQI 722
G E G F Y D+P + E+ +LKS+N QI
Sbjct: 1189 PPGAPGPCCGGVGAAAIAGIGGEKAGGFAPYYGDEPMD---FKINTDEIMTSLKSVNGQI 1245
Query: 723 ETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRA 902
E+L++P+GSRKNPAR CRDL+ HPE SG YW+DPNQGC +DAIKV+C+ TGETCI A
Sbjct: 1246 ESLISPDGSRKNPARNCRDLKFCHPELKSGEYWVDPNQGCKLDAIKVFCNMETGETCISA 1305
Query: 903 QPENIPAKNWYRNSKV-KKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLANHAS 1079
P N+P K+W+ +S KKHVW GE+++GG QF Y + + QLAF+RLL++ AS
Sbjct: 1306 NPLNVPRKHWWTDSSAEKKHVWFGESMDGGFQFSYGNPELPEDVLDVQLAFLRLLSSRAS 1365
Query: 1080 QNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWR 1259
QNITYHCKNSIAYMD+ +GN+KKA+ L GSN+ E AEGNS+FTYTVL DGC+K T EW
Sbjct: 1366 QNITYHCKNSIAYMDQASGNVKKALKLMGSNEGEFKAEGNSKFTYTVLEDGCTKHTGEWS 1425
Query: 1260 KTIIEYKTNKPSRLPILDIAPLDIGDADQEVSVDVGPVCF 1379
KT+ EY+T K RLPI+DIAP DIG DQE VDVGPVCF
Sbjct: 1426 KTVFEYRTRKAVRLPIVDIAPYDIGGPDQEFGVDVGPVCF 1465
Score = 54.7 bits (130), Expect = 2e-07
Identities = 44/161 (27%), Positives = 52/161 (32%), Gaps = 6/161 (3%)
Frame = +3
Query: 54 AGRDGNPGSDGP------PGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGN 215
AG G PG GP PGRDG G G R + G
Sbjct: 506 AGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGP 565
Query: 216 RGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGH 395
G G GE+G PG GP+G PG G G QG PG G
Sbjct: 566 PGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGP 625
Query: 396 HGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 518
GD+ ++G+ G+PG G AG
Sbjct: 626 GGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAG 666
>ref|NP_000384.2| alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 323 bits (827), Expect = 4e-88
Identities = 181/455 (39%), Positives = 238/455 (52%), Gaps = 12/455 (2%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
E G +G G+DG PGRDG G +G+R G RG+
Sbjct: 1045 EPGPEGPAGNDGTPGRDGAVGERGDRGDPGPAGLPGSQGAPGTPGPVGAPGDAGQRGDPG 1104
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQX 410
QG RG+KG+ GD+G RG G +G GLQGLPG G +G+Q
Sbjct: 1105 SRGPIGPPGRAGKRGLPGPQGPRGDKGDHGDRGDRGQKGHRGFTGLQGLPGPPGPNGEQG 1164
Query: 411 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXX-------- 566
K+G G G +GP G+R
Sbjct: 1165 SAGIPGPFGPRGPPGPVGPSGKEGNPGPLGPIGPPGVRGSVGEAGPEGPPGEPGPPGPPG 1224
Query: 567 --XXXXXXXXXXXXXYDFGYEGDFYRADQPRSPPSLRPK-DYEVDATLKSLNNQIETLLT 737
YD + ++ P + K D V ATLKSL++QIET+ +
Sbjct: 1225 PPGHLTAALGDIMGHYDESMPDPLPEFTEDQAAPDDKNKTDPGVHATLKSLSSQIETMRS 1284
Query: 738 PEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQPENI 917
P+GS+K+PARTC DL+L H SG YWIDPNQG DAIKVYC+ TGETCI A P ++
Sbjct: 1285 PDGSKKHPARTCDDLKLCHSAKQSGEYWIDPNQGSVEDAIKVYCNMETGETCISANPSSV 1344
Query: 918 PAKNWYRN-SKVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLANHASQNITY 1094
P K W+ + S K VW G +N G+QF Y + + TQ+ F+RLL+ ASQNITY
Sbjct: 1345 PRKTWWASKSPDNKPVWYGLDMNRGSQFAYG-DHQSPNTAITQMTFLRLLSKEASQNITY 1403
Query: 1095 HCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWRKTIIE 1274
CKNS+ YMD++ NLKKAV+L+G+ND+++ AEGN RF Y VL D CSK+ KT+ E
Sbjct: 1404 ICKNSVGYMDDQAKNLKKAVVLKGANDLDIKAEGNIRFRYIVLQDTCSKRNGNVGKTVFE 1463
Query: 1275 YKTNKPSRLPILDIAPLDIGDADQEVSVDVGPVCF 1379
Y+T +RLPI+D+AP+D+G DQE V++GPVCF
Sbjct: 1464 YRTQNVARLPIIDLAPVDVGGTDQEFGVEIGPVCF 1498
Score = 55.1 bits (131), Expect = 2e-07
Identities = 42/156 (26%), Positives = 49/156 (31%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
E G+ G+ G G PG G G +GER G RGE
Sbjct: 688 EGGKPGDQGVPGDPGAVGPLGPRGERG------------------------NPGERGEPG 723
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQX 410
+G G G PGD GP GL G+ G G+ G PG G G
Sbjct: 724 ITGLPGEKGMAGGHGPDGPKGSPGPSGTPGDTGPPGLQGMPGERGIAGTPGPKGDRG--- 780
Query: 411 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 518
DG G PG +GP G
Sbjct: 781 ---------GIGEKGAEGTAGNDGARGLPGPLGPPG 807
Score = 53.9 bits (128), Expect = 4e-07
Identities = 40/154 (25%), Positives = 47/154 (30%)
Frame = +3
Query: 57 GRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXX 236
G G PG DG PGR+G G G G +GE
Sbjct: 258 GPPGKPGEDGEPGRNGNPGEVGFAGSPGARGFPGAPGLPGLKGHRGHKGLEGPKGEVGAP 317
Query: 237 XXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXX 416
G RG GE G GP+G PG +G +G+ G PG G G
Sbjct: 318 GSKGEAGPTGPMGAMGPLGPRGMPGERGRLGPQGAPGQRGAHGMPGKPGPMGPLGIPGSS 377
Query: 417 XXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 518
+G GQ G GP G
Sbjct: 378 GFPGNPGMKGEAGPTGARGPEGPQGQRGETGPPG 411
Score = 50.1 bits (118), Expect = 6e-06
Identities = 42/161 (26%), Positives = 52/161 (32%), Gaps = 6/161 (3%)
Frame = +3
Query: 57 GRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXX 236
G G+PG+ GPPG G+ G G R G++G+
Sbjct: 504 GPRGDPGTVGPPGPVGERGAPGNRGFPGSDGLPGPKGAQGERGPVGSSGPKGSQGDPGRP 563
Query: 237 XXXXXXXXXXXXXXXXXQGIRGE------KGEPGDKGPRGLPGLKGHNGLQGLPGLAGHH 398
QG G+ GE G GP G G++G G GLPG G
Sbjct: 564 GEPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPGPPGSIGIRGQPGSMGLPGPKGSS 623
Query: 399 GDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 521
GD KDG G G VGP G+
Sbjct: 624 GDP---GKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGPPGL 661
>ref|NP_542196.2| alpha 1 type XI collagen isoform B preproprotein [Homo sapiens]
Length = 1818
Score = 201 bits (511), Expect = 2e-51
Identities = 158/491 (32%), Positives = 203/491 (41%), Gaps = 48/491 (9%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
EAG G PG GPPG G G +GE+ K G G
Sbjct: 1364 EAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEG--- 1420
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKG---------HNGLQGL-- 377
G G+ G PG GP GLPGLKG H GL GL
Sbjct: 1421 ------LRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIG 1474
Query: 378 -PGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXX 554
PG G GD+ G G PG GP G +
Sbjct: 1475 PPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPA- 1533
Query: 555 XXXXXXXXXXXXXXXXXYDFGYEGDFYRADQPRSP----------PSLRPK--------- 677
G +GD P SP P L K
Sbjct: 1534 --------------------GQKGDSGLPGPPGSPGPPGEVIQPLPILSSKKTRRHTEGM 1573
Query: 678 ---------DY-----EVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGY 815
DY E+ +L SL IE + P G++ NPARTC+DL+LSHP++ G
Sbjct: 1574 QADADDNILDYSDGMEEIFGSLNSLKQDIEHMKFPMGTQTNPARTCKDLQLSHPDFPDGE 1633
Query: 816 YWIDPNQGCTMDAIKVYCDF-STGETCI--RAQPENIPAKNWYRNSKVKKHVWLGETING 986
YWIDPNQGC+ D+ KVYC+F S GETCI + E + +W K K W E G
Sbjct: 1634 YWIDPNQGCSGDSFKVYCNFTSGGETCIYPDKKSEGVRISSW---PKEKPGSWFSEFKRG 1690
Query: 987 GTQFEYNMEGVTTKEMATQLAFMRLLANHASQNITYHCKNSIAYMDEETGNLKKAVILQG 1166
++EG + Q+ F++LL A QN TYHC S A+ D +G+ KA+ G
Sbjct: 1691 KLLSYLDVEGNSIN--MVQMTFLKLLTASARQNFTYHCHQSAAWYDVSSGSYDKALRFLG 1748
Query: 1167 SNDVELVAEGNSRFTYTVLVDGCSKKTNEWRKTIIEYKTNKPSRLPILDIAPLDIGDADQ 1346
SND E+ + N+ F T L DGC+ + + KT+IE T K ++PI+D+ D GD +Q
Sbjct: 1749 SNDEEM-SYDNNPFIKT-LYDGCASRKG-YEKTVIEINTPKIDQVPIVDVMINDFGDQNQ 1805
Query: 1347 EVSVDVGPVCF 1379
+ +VGPVCF
Sbjct: 1806 KFGFEVGPVCF 1816
Score = 49.7 bits (117), Expect = 8e-06
Identities = 43/162 (26%), Positives = 51/162 (31%), Gaps = 6/162 (3%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEX- 227
E G G G GP GRDG G G G++GE
Sbjct: 1100 EKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENG 1159
Query: 228 -----XXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAG 392
+G +G G+ GD+G RG PG G GLQGLPG G
Sbjct: 1160 PPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPG 1219
Query: 393 HHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 518
G+ DG G PG+VG G
Sbjct: 1220 EKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVG 1261
>ref|NP_542197.2| alpha 1 type XI collagen isoform C preproprotein [Homo sapiens]
Length = 1767
Score = 201 bits (511), Expect = 2e-51
Identities = 158/491 (32%), Positives = 203/491 (41%), Gaps = 48/491 (9%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
EAG G PG GPPG G G +GE+ K G G
Sbjct: 1313 EAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEG--- 1369
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKG---------HNGLQGL-- 377
G G+ G PG GP GLPGLKG H GL GL
Sbjct: 1370 ------LRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIG 1423
Query: 378 -PGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXX 554
PG G GD+ G G PG GP G +
Sbjct: 1424 PPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPA- 1482
Query: 555 XXXXXXXXXXXXXXXXXYDFGYEGDFYRADQPRSP----------PSLRPK--------- 677
G +GD P SP P L K
Sbjct: 1483 --------------------GQKGDSGLPGPPGSPGPPGEVIQPLPILSSKKTRRHTEGM 1522
Query: 678 ---------DY-----EVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGY 815
DY E+ +L SL IE + P G++ NPARTC+DL+LSHP++ G
Sbjct: 1523 QADADDNILDYSDGMEEIFGSLNSLKQDIEHMKFPMGTQTNPARTCKDLQLSHPDFPDGE 1582
Query: 816 YWIDPNQGCTMDAIKVYCDF-STGETCI--RAQPENIPAKNWYRNSKVKKHVWLGETING 986
YWIDPNQGC+ D+ KVYC+F S GETCI + E + +W K K W E G
Sbjct: 1583 YWIDPNQGCSGDSFKVYCNFTSGGETCIYPDKKSEGVRISSW---PKEKPGSWFSEFKRG 1639
Query: 987 GTQFEYNMEGVTTKEMATQLAFMRLLANHASQNITYHCKNSIAYMDEETGNLKKAVILQG 1166
++EG + Q+ F++LL A QN TYHC S A+ D +G+ KA+ G
Sbjct: 1640 KLLSYLDVEGNSIN--MVQMTFLKLLTASARQNFTYHCHQSAAWYDVSSGSYDKALRFLG 1697
Query: 1167 SNDVELVAEGNSRFTYTVLVDGCSKKTNEWRKTIIEYKTNKPSRLPILDIAPLDIGDADQ 1346
SND E+ + N+ F T L DGC+ + + KT+IE T K ++PI+D+ D GD +Q
Sbjct: 1698 SNDEEM-SYDNNPFIKT-LYDGCASRKG-YEKTVIEINTPKIDQVPIVDVMINDFGDQNQ 1754
Query: 1347 EVSVDVGPVCF 1379
+ +VGPVCF
Sbjct: 1755 KFGFEVGPVCF 1765
Score = 49.7 bits (117), Expect = 8e-06
Identities = 43/162 (26%), Positives = 51/162 (31%), Gaps = 6/162 (3%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEX- 227
E G G G GP GRDG G G G++GE
Sbjct: 1049 EKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENG 1108
Query: 228 -----XXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAG 392
+G +G G+ GD+G RG PG G GLQGLPG G
Sbjct: 1109 PPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPG 1168
Query: 393 HHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 518
G+ DG G PG+VG G
Sbjct: 1169 EKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVG 1210
>ref|NP_001845.3| alpha 1 type XI collagen isoform A preproprotein [Homo sapiens]
Length = 1806
Score = 201 bits (511), Expect = 2e-51
Identities = 158/491 (32%), Positives = 203/491 (41%), Gaps = 48/491 (9%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
EAG G PG GPPG G G +GE+ K G G
Sbjct: 1352 EAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEG--- 1408
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKG---------HNGLQGL-- 377
G G+ G PG GP GLPGLKG H GL GL
Sbjct: 1409 ------LRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIG 1462
Query: 378 -PGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXX 554
PG G GD+ G G PG GP G +
Sbjct: 1463 PPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPA- 1521
Query: 555 XXXXXXXXXXXXXXXXXYDFGYEGDFYRADQPRSP----------PSLRPK--------- 677
G +GD P SP P L K
Sbjct: 1522 --------------------GQKGDSGLPGPPGSPGPPGEVIQPLPILSSKKTRRHTEGM 1561
Query: 678 ---------DY-----EVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGY 815
DY E+ +L SL IE + P G++ NPARTC+DL+LSHP++ G
Sbjct: 1562 QADADDNILDYSDGMEEIFGSLNSLKQDIEHMKFPMGTQTNPARTCKDLQLSHPDFPDGE 1621
Query: 816 YWIDPNQGCTMDAIKVYCDF-STGETCI--RAQPENIPAKNWYRNSKVKKHVWLGETING 986
YWIDPNQGC+ D+ KVYC+F S GETCI + E + +W K K W E G
Sbjct: 1622 YWIDPNQGCSGDSFKVYCNFTSGGETCIYPDKKSEGVRISSW---PKEKPGSWFSEFKRG 1678
Query: 987 GTQFEYNMEGVTTKEMATQLAFMRLLANHASQNITYHCKNSIAYMDEETGNLKKAVILQG 1166
++EG + Q+ F++LL A QN TYHC S A+ D +G+ KA+ G
Sbjct: 1679 KLLSYLDVEGNSIN--MVQMTFLKLLTASARQNFTYHCHQSAAWYDVSSGSYDKALRFLG 1736
Query: 1167 SNDVELVAEGNSRFTYTVLVDGCSKKTNEWRKTIIEYKTNKPSRLPILDIAPLDIGDADQ 1346
SND E+ + N+ F T L DGC+ + + KT+IE T K ++PI+D+ D GD +Q
Sbjct: 1737 SNDEEM-SYDNNPFIKT-LYDGCASRKG-YEKTVIEINTPKIDQVPIVDVMINDFGDQNQ 1793
Query: 1347 EVSVDVGPVCF 1379
+ +VGPVCF
Sbjct: 1794 KFGFEVGPVCF 1804
Score = 49.7 bits (117), Expect = 8e-06
Identities = 43/162 (26%), Positives = 51/162 (31%), Gaps = 6/162 (3%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEX- 227
E G G G GP GRDG G G G++GE
Sbjct: 1088 EKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENG 1147
Query: 228 -----XXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAG 392
+G +G G+ GD+G RG PG G GLQGLPG G
Sbjct: 1148 PPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPG 1207
Query: 393 HHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 518
G+ DG G PG+VG G
Sbjct: 1208 EKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVG 1249
>ref|NP_000084.3| alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 190 bits (482), Expect = 4e-48
Identities = 141/451 (31%), Positives = 191/451 (42%), Gaps = 8/451 (1%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
E G G+PG DGPPG G G G + + G+RG
Sbjct: 1448 EQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQGEKGDRG--- 1504
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQX 410
QGI G G G GP GLPG G G +G G G G+
Sbjct: 1505 ------LPGPQGSSGPKGEQGITGPSGPIGPPGPPGLPGPPGPKGAKGSSGPTGPKGEA- 1557
Query: 411 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXX 590
G G PG GP G
Sbjct: 1558 -----------------------GHPGPPGPPGPPG-------EVIQPLPIQASRTRRNI 1587
Query: 591 XXXXXYDFGYEGDFYRADQPRSPPSLRPKDY-----EVDATLKSLNNQIETLLTPEGSRK 755
D G G+ Y DY E+ +L SL +IE + P G+++
Sbjct: 1588 DASQLLDDG-NGENY-------------VDYADGMEEIFGSLNSLKLEIEQMKRPLGTQQ 1633
Query: 756 NPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFST-GETCIRAQPENIPAK-- 926
NPARTC+DL+L HP++ G YW+DPNQGC+ D+ KVYC+F+ G TC+ ++ A+
Sbjct: 1634 NPARTCKDLQLCHPDFPDGEYWVDPNQGCSRDSFKVYCNFTAGGSTCVFPDKKSEGARIT 1693
Query: 927 NWYRNSKVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLANHASQNITYHCKN 1106
+W K W E G + EG Q+ F+RLL+ A QN+TYHC
Sbjct: 1694 SW---PKENPGSWFSEFKRGKLLSYVDAEG--NPVGVVQMTFLRLLSASAHQNVTYHCYQ 1748
Query: 1107 SIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWRKTIIEYKTN 1286
S+A+ D TG+ KA+ GSND E+ + N LVDGC+ K ++KT++E T
Sbjct: 1749 SVAWQDAATGSYDKALRFLGSNDEEMSYDNNPYI--RALVDGCATKKG-YQKTVLEIDTP 1805
Query: 1287 KPSRLPILDIAPLDIGDADQEVSVDVGPVCF 1379
K ++PI+DI D G+A Q+ +VGP CF
Sbjct: 1806 KVEQVPIVDIMFNDFGEASQKFGFEVGPACF 1836
Database: RefSeqHP
Posted date: Aug 2, 2006 12:57 AM
Number of letters in database: 17,774,539
Number of sequences in database: 39,411
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,497,986
Number of Sequences: 39411
Number of extensions: 1060011
Number of successful extensions: 19964
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 3355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12080
length of database: 17,774,539
effective HSP length: 107
effective length of database: 13,557,562
effective search space used: 6317823892
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqSP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0179_G10
(1723 letters)
Database: RefSeqSP
1040 sequences; 434,620 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001014971.1| procollagen alpha 1(V) [Sus scrofa] 185 2e-48
Alignment gi|NP_001005153.1| type X collagen [Sus scrofa] 54 1e-08
Alignment gi|NP_999275.1| lung surfactant protein D [Sus scrofa] 50 2e-07
>ref|NP_001014971.1| procollagen alpha 1(V) [Sus scrofa]
Length = 1840
Score = 185 bits (470), Expect = 2e-48
Identities = 140/448 (31%), Positives = 190/448 (42%), Gaps = 5/448 (1%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
E G G PG DGPPG G G G + + G+RG
Sbjct: 1450 EQGLPGAPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQGEKGDRG--- 1506
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQX 410
QGI G G G GP GLPG G G +G G G G+
Sbjct: 1507 ------LPGPQGSSGPKGEQGITGPSGPIGPPGPPGLPGPPGPKGAKGSSGPTGPKGEA- 1559
Query: 411 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG--IRXXXXXXXXXXXXXXXXXXXX 584
G G PG GP G I+
Sbjct: 1560 -----------------------GHPGPPGPPGPPGEVIQPLPIQASRTRRNIDASQLMD 1596
Query: 585 XXXXXXXYDFGYEGDFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPA 764
D+ AD E+ +L SL +IE + P G+++NPA
Sbjct: 1597 EGEAENYMDY--------ADGME----------EIFGSLNSLKLEIEQMKRPLGTQQNPA 1638
Query: 765 RTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFST-GETCIRAQPENIPAK--NWY 935
RTC+DL+L HP++ G YW+DPNQGC+ D+ KVYC+F+ G TC+ ++ A+ +W
Sbjct: 1639 RTCKDLQLCHPDFPDGEYWVDPNQGCSRDSFKVYCNFTAGGSTCVFPDKKSEGARITSW- 1697
Query: 936 RNSKVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLANHASQNITYHCKNSIA 1115
K W E G + EG Q+ F+RLL+ A QNITY+C S+A
Sbjct: 1698 --PKENPGSWFSEFKRGKLLSYVDAEG--NPVGVVQMTFLRLLSASAHQNITYNCYQSVA 1753
Query: 1116 YMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWRKTIIEYKTNKPS 1295
+ D TG KA+ GSND E+ + NS + LVDGC+ + ++KT++E T K
Sbjct: 1754 WQDAATGGYDKAMRFLGSNDEEM-SYDNSPY-IRALVDGCATRKG-YQKTVLEIDTPKVE 1810
Query: 1296 RLPILDIAPLDIGDADQEVSVDVGPVCF 1379
++PI+DI D GDA Q+ +VGP CF
Sbjct: 1811 QVPIVDIMFNDFGDASQKFGFEVGPACF 1838
Score = 53.5 bits (127), Expect = 1e-08
Identities = 42/154 (27%), Positives = 51/154 (33%)
Frame = +3
Query: 57 GRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXX 236
G DG+ G G PG+ G G KGE+ G G
Sbjct: 1155 GEDGDKGEIGEPGQKGSKGDKGEQ---------------------------GPPGPTGPQ 1187
Query: 237 XXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXX 416
+G +G G+ GD+GPRG PG G GLQGLPG G G+
Sbjct: 1188 GPIGQPGPSGADGEPGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDV 1247
Query: 417 XXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 518
DG G PG +G G
Sbjct: 1248 GQMGPPGPPGPRGPSGAPGADGPQGPPGGIGNPG 1281
Score = 52.8 bits (125), Expect = 3e-08
Identities = 46/171 (26%), Positives = 52/171 (30%), Gaps = 15/171 (8%)
Frame = +3
Query: 57 GRDGNPGSDGPPGRDGQAGHKGERXXXXX------XXXXXXXXXXXXXXXXXXXXKHGNR 218
G G PG+DGPPG G+ G GE+ G +
Sbjct: 753 GLPGMPGADGPPGHPGKEGPPGEKGGQGPPGPQGPIGYPGPRGVKGADGIRGLKGTKGEK 812
Query: 219 GEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPG---------DKGPRGLPGLKGHNGLQ 371
GE G RGE G G D GP G PG KG G+
Sbjct: 813 GEDGFPGFKGDMGIKGDRGEIGPPGPRGEDGPEGPKGRGGPNGDPGPLGPPGEKGKLGVP 872
Query: 372 GLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 524
GLPG G G + K G GQ G GP G R
Sbjct: 873 GLPGYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRGPTGPRGER 923
Score = 52.4 bits (124), Expect = 3e-08
Identities = 46/160 (28%), Positives = 53/160 (33%), Gaps = 6/160 (3%)
Frame = +3
Query: 57 GRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXX 236
GR G GSDG G GQ G KG+R G+ GE
Sbjct: 609 GRRGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGHRGDPGPSGPPGPPGDDGERGDD 668
Query: 237 XXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGL------PGLKGHNGLQGLPGLAGHH 398
+G+ G KG PG GP G+ PG KG+ G QG PG G
Sbjct: 669 GEVGPRGLPGEPGP---RGLLGPKGPPGPPGPPGVTGTDGQPGPKGNVGPQGEPGPPGQQ 725
Query: 399 GDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 518
G+ K G G PGA GP G
Sbjct: 726 GNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPG 765
Score = 51.2 bits (121), Expect = 7e-08
Identities = 44/156 (28%), Positives = 48/156 (30%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
E G+ G PG G PGR G G G G RGE
Sbjct: 865 EKGKLGVPGLPGYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRGPTGPRGERG 924
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQX 410
G GE+G G +GP G PG KG G G GL GH G +
Sbjct: 925 PRGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTGFPGPKGPPGPPGKDGLPGHPGQR- 983
Query: 411 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 518
K G G PG VGP G
Sbjct: 984 --------------GETGFQGKTGPPGPPGVVGPQG 1005
Score = 49.3 bits (116), Expect = 3e-07
Identities = 45/156 (28%), Positives = 50/156 (32%)
Frame = +3
Query: 57 GRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXX 236
G G G GPPG+DG GH G+R K G G
Sbjct: 960 GFPGPKGPPGPPGKDGLPGHPGQRGETGFQG------------------KTGPPGPPGVV 1001
Query: 237 XXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXX 416
G +G GE G G RG PG G G QGLPGLAG G +
Sbjct: 1002 ------------------GPQGPTGETGPMGERGHPGPPGPPGEQGLPGLAGKEGTK--- 1040
Query: 417 XXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 524
G G PG GP G+R
Sbjct: 1041 ------------------GDPGPAGLPGKDGPPGLR 1058
Score = 47.8 bits (112), Expect = 8e-07
Identities = 40/154 (25%), Positives = 47/154 (30%)
Frame = +3
Query: 57 GRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXX 236
G G PG+DGP G G G+ G + G +GE
Sbjct: 1260 GPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESGPS 1319
Query: 237 XXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXX 416
G G KG PGD GP+G PG G G G PG G G
Sbjct: 1320 GAA---------------GPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPP 1364
Query: 417 XXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 518
+ G +G PG GP G
Sbjct: 1365 GDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPPG 1398
Score = 45.8 bits (107), Expect = 3e-06
Identities = 38/154 (24%), Positives = 46/154 (29%)
Frame = +3
Query: 57 GRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXX 236
G G+PG GPPG G G G+ G G
Sbjct: 1014 GERGHPGPPGPPGEQGLPGLAGKEGTKGDPGPAGLPGKDGPPGLRGFPGDRGLPGPVGAL 1073
Query: 237 XXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXX 416
G++G +G PG GP G PG +G G G G+ G G Q
Sbjct: 1074 ------------------GLKGSEGPPGPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPP 1115
Query: 417 XXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 518
+DG G G GPAG
Sbjct: 1116 GPAGEKGAPGEKGPQGPAGRDGLQGPVGLPGPAG 1149
Score = 44.3 bits (103), Expect = 9e-06
Identities = 28/78 (35%), Positives = 31/78 (39%)
Frame = +3
Query: 291 GIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXX 470
G G KGEPGD GP+G G++G G G PG G G
Sbjct: 579 GSGGLKGEPGDMGPQGPRGVQGPPGPAGKPGRRGRAG----------------------- 615
Query: 471 XKDGRTGQPGAVGPAGIR 524
DG G PG GP G R
Sbjct: 616 -SDGARGMPGQTGPKGDR 632
>ref|NP_001005153.1| type X collagen [Sus scrofa]
Length = 675
Score = 53.5 bits (127), Expect = 1e-08
Identities = 44/156 (28%), Positives = 49/156 (31%)
Frame = +3
Query: 54 AGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXX 233
AG G PG GPPG G G KG G RG
Sbjct: 329 AGHPGEPGLTGPPGSRGPQGPKG---IPGNNGVPGPKGEIGLAGPAGFPGAKGERGPSGL 385
Query: 234 XXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXX 413
G+ G KG+PG GP GLPG G G +G+PG G G +
Sbjct: 386 DGKPGYPGEPGLNGPKGNPGLPGPKGDPGIGGPPGLPGPVGPAGAKGVPGHNGEAGPRGA 445
Query: 414 XXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 521
G G PG GPAGI
Sbjct: 446 PGIPGTRGPIGPPGIPGFPGSKGDPGNPGPPGPAGI 481
>ref|NP_999275.1| lung surfactant protein D [Sus scrofa]
Length = 378
Score = 49.7 bits (117), Expect = 2e-07
Identities = 33/111 (29%), Positives = 39/111 (35%)
Frame = +3
Query: 54 AGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXX 233
+G+ GN G G PG G+ G KGE G RG
Sbjct: 123 SGQQGNIGPPGTPGPKGETGPKGE---------VGALGMQGSTGARGPAGLKGERGAPGE 173
Query: 234 XXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 386
QG G +G PG KG RG PG +G G GLPG+
Sbjct: 174 RGAPGSAGAAGPAGATGPQGPSGARGPPGLKGDRGPPGERGAKGESGLPGI 224
Database: RefSeqSP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 434,620
Number of sequences in database: 1040
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,183,053
Number of Sequences: 1040
Number of extensions: 25605
Number of successful extensions: 620
Number of sequences better than 1.0e-05: 3
Number of HSP's better than 0.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 434,620
effective HSP length: 82
effective length of database: 349,340
effective search space used: 171525940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0179_G10
(1723 letters)
Database: RefSeqMP
45,328 sequences; 21,768,885 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031769.1| procollagen, type I, alpha 2 [Mus musculus] 613 e-175
Alignment gi|NP_112440.1| procollagen, type II, alpha 1 [Mus musculus] 422 e-118
Alignment gi|NP_031768.2| procollagen, type I, alpha 1 [Mus musculus] 414 e-115
Alignment gi|NP_034060.1| procollagen, type III, alpha 1 [Mus musculus] 376 e-104
Alignment gi|NP_031763.2| procollagen, type V, alpha 2 [Mus musculus] 326 5e-89
Alignment gi|NP_031755.1| procollagen, type XI, alpha 1 [Mus musculus] 202 1e-51
Alignment gi|NP_056549.1| procollagen, type V, alpha 1 [Mus musculus] 188 1e-47
Alignment gi|NP_058615.1| procollagen, type V, alpha 3 [Mus musculus] 167 2e-41
Alignment gi|NP_034056.1| procollagen, type XI, alpha 2 [Mus musculus] 144 2e-34
Alignment gi|NP_079961.2| procollagen, type XXVII, alpha 1 [Mus musculus] 139 9e-33
>ref|NP_031769.1| procollagen, type I, alpha 2 [Mus musculus]
Length = 1373
Score = 613 bits (1580), Expect = e-175
Identities = 309/445 (69%), Positives = 328/445 (73%), Gaps = 1/445 (0%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
EAGRDGNPGSDGPPGRDGQ GHKGER KHGNRGE
Sbjct: 929 EAGRDGNPGSDGPPGRDGQPGHKGERGYPGSIGPTGAAGAPGPHGSVGPAGKHGNRGEPG 988
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQX 410
QGIRG+KGEPGDKG RGLPGLKG++GLQGLPGLAG HGDQ
Sbjct: 989 PAGSVGPVGAVGPRGPSGPQGIRGDKGEPGDKGHRGLPGLKGYSGLQGLPGLAGLHGDQG 1048
Query: 411 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXX 590
KDGR+GQPG VGPAG+R
Sbjct: 1049 APGPVGPAGPRGPAGPSGPVGKDGRSGQPGPVGPAGVRGSQGSQGPAGPPGPPGPPGPPG 1108
Query: 591 XXXXXYDFGYEGDFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPART 770
YDFG+EGDFYRADQPRS PSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPA T
Sbjct: 1109 VSGGGYDFGFEGDFYRADQPRSQPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPATT 1168
Query: 771 -CRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQPENIPAKNWYRNSK 947
CRDLRLSHPEW+S YYWIDPNQGCTMDAIKVYCDFSTGETCI+AQP N PAKN Y ++
Sbjct: 1169 TCRDLRLSHPEWNSDYYWIDPNQGCTMDAIKVYCDFSTGETCIQAQPVNTPAKNSYSRAQ 1228
Query: 948 VKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLANHASQNITYHCKNSIAYMDE 1127
KHVWLGETINGG+QFEYN+EGV++KEMATQLAFMRLLAN ASQNITYHCKNSIAY+DE
Sbjct: 1229 ANKHVWLGETINGGSQFEYNVEGVSSKEMATQLAFMRLLANRASQNITYHCKNSIAYLDE 1288
Query: 1128 ETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWRKTIIEYKTNKPSRLPI 1307
ETG+L KAV+LQGSNDVELVAEGNSRFTY+VLVDGCSKKTNEW KTIIEYKTNKPSRLP
Sbjct: 1289 ETGSLNKAVLLQGSNDVELVAEGNSRFTYSVLVDGCSKKTNEWGKTIIEYKTNKPSRLPF 1348
Query: 1308 LDIAPLDIGDADQEVSVDVGPVCFK 1382
LDIAPLDIG ADQE V+VGPVCFK
Sbjct: 1349 LDIAPLDIGGADQEFRVEVGPVCFK 1373
Score = 54.7 bits (130), Expect = 3e-07
Identities = 44/156 (28%), Positives = 52/156 (33%)
Frame = +3
Query: 54 AGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXX 233
AG G PG G PG G AG G R G++GE
Sbjct: 324 AGAPGLPGPRGIPGPAGAAGATGARGLVGEPGPA------------------GSKGESGN 365
Query: 234 XXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXX 413
+G RG GE G GP G PGL+G G +GLPG G G
Sbjct: 366 KGEPGSVGAQGPPGPSGEEGKRGSPGEAGSAGPAGPPGLRGSPGSRGLPGADGRAGVMGP 425
Query: 414 XXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 521
GR G+PG +GP G+
Sbjct: 426 PGNRGSTGPAGIRGPNGDA---GRPGEPGLMGPRGL 458
Score = 52.0 bits (123), Expect = 2e-06
Identities = 40/159 (25%), Positives = 49/159 (30%), Gaps = 3/159 (1%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
E G+ G G G G G AG +GER GN+GE
Sbjct: 572 EVGKPGERGLPGEFGLPGPAGPRGERGTPGESGAAGPSGPIGSRGPSGAPGPDGNKGEAG 631
Query: 231 XXXXXXXXXXXXXXXXXXXQG---IRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHG 401
+G I G KGE G+ G RG G G +G +G+PG G G
Sbjct: 632 AVGAPGSAGASGPGGLPGERGAAGIPGGKGEKGETGLRGDTGNTGRDGARGIPGAVGAPG 691
Query: 402 DQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 518
G G+ G GP G
Sbjct: 692 PAGASGDRGEAGAAGPSGPAGPRGSPGERGEVGPAGPNG 730
>ref|NP_112440.1| procollagen, type II, alpha 1 [Mus musculus]
Length = 1442
Score = 422 bits (1084), Expect = e-118
Identities = 220/456 (48%), Positives = 268/456 (58%), Gaps = 13/456 (2%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
E GR+G+PG+DGPPGRDG AG KG+R K G+RGE
Sbjct: 988 EPGREGSPGADGPPGRDGAAGVKGDRGETGALGAPGAPGPPGSPGPAGPTGKQGDRGEAG 1047
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQX 410
QG RG+KGE G++G RGL G +G GLQGLPG G GDQ
Sbjct: 1048 AQGPMGPSGPAGARGIAGPQGPRGDKGESGEQGERGLKGHRGFTGLQGLPGPPGPSGDQG 1107
Query: 411 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXX 590
KDG G PG +GP G R
Sbjct: 1108 ASGPAGPSGPRGPPGPVGPSGKDGSNGIPGPIGPPGPRGRSGETGPVGPPGSPGPPGPPG 1167
Query: 591 XXXXXYDFG-YEG-----------DFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLL 734
D + G + RAD+ S +LR D EVDATLKSLNNQIE++
Sbjct: 1168 PPGPGIDMSAFAGLGQREKGPDPMQYMRADEADS--TLRQHDVEVDATLKSLNNQIESIR 1225
Query: 735 TPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQPEN 914
+P+GSRKNPARTC+DL+L HPEW SG YWIDPNQGCT+DA+KV+C+ TGETC+ P
Sbjct: 1226 SPDGSRKNPARTCQDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETGETCVYPNPAT 1285
Query: 915 IPAKNWYRN-SKVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLANHASQNIT 1091
+P KNW+ + SK KKH+W GET+NGG F Y + Q+ F+RLL+ SQNIT
Sbjct: 1286 VPRKNWWSSKSKEKKHIWFGETMNGGFHFSYGDGNLAPNTANVQMTFLRLLSTEGSQNIT 1345
Query: 1092 YHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWRKTII 1271
YHCKNSIAY+DE GNLKKA+++QGSNDVE+ AEGNSRFTYT L DGC+K T +W KT+I
Sbjct: 1346 YHCKNSIAYLDEAAGNLKKALLIQGSNDVEMRAEGNSRFTYTALKDGCTKHTGKWGKTVI 1405
Query: 1272 EYKTNKPSRLPILDIAPLDIGDADQEVSVDVGPVCF 1379
EY++ K SRLPI+DIAP+DIG A+QE VD+GPVCF
Sbjct: 1406 EYRSQKTSRLPIIDIAPMDIGGAEQEFGVDIGPVCF 1441
Score = 56.6 bits (135), Expect = 8e-08
Identities = 47/160 (29%), Positives = 51/160 (31%), Gaps = 6/160 (3%)
Frame = +3
Query: 57 GRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXX 236
G +GNPG GPPG G+ G KG R G G+
Sbjct: 864 GANGNPGPAGPPGPAGKDGPKGVRGDSG---------------------PPGRAGDPGLE 902
Query: 237 XXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGL------PGLKGHNGLQGLPGLAGHH 398
G GEKGEPGD GP GL GL G G+ GLPG G
Sbjct: 903 GPA---------------GAPGEKGEPGDDGPSGLDGPPGPQGLAGQRGIVGLPGQRGER 947
Query: 399 GDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 518
G G G PG GPAG
Sbjct: 948 GFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAG 987
Score = 53.5 bits (127), Expect = 7e-07
Identities = 44/155 (28%), Positives = 51/155 (32%)
Frame = +3
Query: 54 AGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXX 233
AG +G G+ G PG G G GER GNRG
Sbjct: 440 AGEEGKRGARGEPGGAGPIGPPGERGAP------------------------GNRG---- 471
Query: 234 XXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXX 413
G+ G KG PG++GP GL G KG NG G PG G G +
Sbjct: 472 --------------FPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGL 517
Query: 414 XXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 518
+DGR G PG G G
Sbjct: 518 TGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARG 552
Score = 52.0 bits (123), Expect = 2e-06
Identities = 43/167 (25%), Positives = 49/167 (29%), Gaps = 12/167 (7%)
Frame = +3
Query: 54 AGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXX 233
AG G G+DG PG G G G G+RGE
Sbjct: 293 AGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGSRGEPGN 352
Query: 234 XXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGL------------ 377
G +G G PG G G PG +G G QG
Sbjct: 353 PGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQAGE 412
Query: 378 PGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 518
PG+AG GDQ K G G+PG GP G
Sbjct: 413 PGIAGFKGDQGPKGETGPAGPQGAPGPAGEEGKRGARGEPGGAGPIG 459
Score = 51.2 bits (121), Expect = 3e-06
Identities = 27/77 (35%), Positives = 31/77 (40%)
Frame = +3
Query: 291 GIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXX 470
G GE G+PG G RGLPG G G G PGL G G +
Sbjct: 207 GDDGEAGKPGKSGERGLPGPMGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGES 266
Query: 471 XKDGRTGQPGAVGPAGI 521
G G PG +GP G+
Sbjct: 267 GSPGENGSPGPMGPRGL 283
>ref|NP_031768.2| procollagen, type I, alpha 1 [Mus musculus]
Length = 1453
Score = 414 bits (1063), Expect = e-115
Identities = 212/456 (46%), Positives = 265/456 (58%), Gaps = 13/456 (2%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
E+GR+G+PG++G PGRDG G KG+R K+G+RGE
Sbjct: 1000 ESGREGSPGAEGSPGRDGAPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKNGDRGETG 1059
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQX 410
QG RG+KGE G++G RG+ G +G +GLQG PG G G+Q
Sbjct: 1060 PAGPAGPIGPAGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGSPGSPGEQG 1119
Query: 411 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXX 590
KDG G PG +GP G R
Sbjct: 1120 PSGASGPAGPRGPPGSAGSPGKDGLNGLPGPIGPPGPRGRTGDSGPAGPPGPPGPPGPPG 1179
Query: 591 XXXXXYDFGY-----------EGDFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLT 737
YDF + G +YRAD +R +D EVD TLKSL+ QIE + +
Sbjct: 1180 PPSGGYDFSFLPQPPQEKSQDGGRYYRADDANV---VRDRDLEVDTTLKSLSQQIENIRS 1236
Query: 738 PEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQPENI 917
PEGSRKNPARTCRDL++ H +W SG YWIDPNQGC +DAIKVYC+ TG+TC+ ++
Sbjct: 1237 PEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKVYCNMETGQTCVFPTQPSV 1296
Query: 918 PAKNWY--RNSKVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLANHASQNIT 1091
P KNWY N K KKHVW GE++ G FEY EG ++A QL F+RL++ ASQNIT
Sbjct: 1297 PQKNWYISPNPKEKKHVWFGESMTDGFPFEYGSEGSDPADVAIQLTFLRLMSTEASQNIT 1356
Query: 1092 YHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWRKTII 1271
YHCKNS+AYMD++TGNLKKA++LQGSN++EL EGNSRFTY+ LVDGC+ T W KT+I
Sbjct: 1357 YHCKNSVAYMDQQTGNLKKALLLQGSNEIELRGEGNSRFTYSTLVDGCTSHTGTWGKTVI 1416
Query: 1272 EYKTNKPSRLPILDIAPLDIGDADQEVSVDVGPVCF 1379
EYKT K SRLPI+D+APLDIG DQE +D+GP CF
Sbjct: 1417 EYKTTKTSRLPIIDVAPLDIGAPDQEFGLDIGPACF 1452
Score = 58.2 bits (139), Expect = 3e-08
Identities = 45/155 (29%), Positives = 51/155 (32%)
Frame = +3
Query: 54 AGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXX 233
AG+DG PG GPPG GQAG G K G RG
Sbjct: 548 AGQDGRPGPAGPPGARGQAGVMG---------------FPGPKGTAGEPGKAGERGLPGP 592
Query: 234 XXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXX 413
G G GE G++GP G PG +G G G PG AG G+Q
Sbjct: 593 PGAVGPAGKDGEAGAQGAPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGV 652
Query: 414 XXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 518
+ G G PG GP G
Sbjct: 653 PGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRG 687
Score = 50.1 bits (118), Expect = 7e-06
Identities = 39/155 (25%), Positives = 50/155 (32%)
Frame = +3
Query: 54 AGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXX 233
AG G PG+ GP G G +G G + GN+G+
Sbjct: 395 AGAPGFPGARGPSGPQGPSGPPGPKGNSGEPGA------------------PGNKGDTGA 436
Query: 234 XXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXX 413
+G RG +GEPG G G PG +G G +G PG G G +
Sbjct: 437 KGEPGATGVQGPPGPAGEEGKRGARGEPGPSGLPGPPGERGGPGSRGFPGADGVAGPKGP 496
Query: 414 XXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 518
+ G G PGA G G
Sbjct: 497 SGERGAPGPAGPKGSPGEAGRPGEAGLPGAKGLTG 531
Score = 50.1 bits (118), Expect = 7e-06
Identities = 39/154 (25%), Positives = 48/154 (31%)
Frame = +3
Query: 57 GRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXX 236
G G+PG +G PG+ G G GER G G
Sbjct: 276 GEPGSPGENGAPGQMGPRGLPGERGRPGPPGTAGARGNDGAVGAAGPPGPTGPTGPPGFP 335
Query: 237 XXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXX 416
+G +G +GEPG GP G G G+ G G PG G +G
Sbjct: 336 GAVGAKGEAGPQGARGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIA 395
Query: 417 XXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 518
G G PGA GP+G
Sbjct: 396 ---------------------GAPGFPGARGPSG 408
>ref|NP_034060.1| procollagen, type III, alpha 1 [Mus musculus]
Length = 1464
Score = 376 bits (966), Expect = e-104
Identities = 206/459 (44%), Positives = 251/459 (54%), Gaps = 16/459 (3%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
E GRDGNPGSDG PGRDG G KG+R K G+RGE
Sbjct: 1008 EPGRDGNPGSDGQPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPSGKSGDRGETG 1067
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQX 410
QG RG+KGE G++G G+ G +G G G PG G G Q
Sbjct: 1068 PAGPSGAPGPAGARGAPGPQGPRGDKGETGERGSNGIKGHRGFPGNPGPPGSPGAAGHQG 1127
Query: 411 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXX-- 584
KDG +G PG +GP G R
Sbjct: 1128 AIGSPGPAGPRGPVGPHGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPG 1187
Query: 585 ---------XXXXXXXYDFGYE--GDF--YRADQPRSPPSLRPKDYEVDATLKSLNNQIE 725
G E G F Y D P + E+ ++LKS+N QIE
Sbjct: 1188 PPGAPGPCCGGGAAAIVGVGGEKSGGFSPYYGDDPMD---FKINTEEIMSSLKSVNGQIE 1244
Query: 726 TLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQ 905
+L++P+GSRKNPAR CRDL+ HPE SG YW+DPNQGC MDAIKV+C+ TGETCI A
Sbjct: 1245 SLISPDGSRKNPARNCRDLKFCHPELKSGEYWVDPNQGCKMDAIKVFCNMETGETCINAS 1304
Query: 906 PENIPAKNWYRNSKV-KKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLANHASQ 1082
P +P K+W+ +S KKHVW GE++NGG QF Y + + QLAF+RLL++ ASQ
Sbjct: 1305 PMTVPRKHWWTDSGAEKKHVWFGESMNGGFQFSYGPPDLPEDVVDVQLAFLRLLSSRASQ 1364
Query: 1083 NITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWRK 1262
NITYHCKNSIAYMD+ +GN+KK++ L GSN+ E AEGNS+FTYTVL DGC+K T EW K
Sbjct: 1365 NITYHCKNSIAYMDQASGNVKKSLKLMGSNEGEFKAEGNSKFTYTVLEDGCTKHTGEWSK 1424
Query: 1263 TIIEYKTNKPSRLPILDIAPLDIGDADQEVSVDVGPVCF 1379
T+ EY+T K RLPI+DIAP DIG DQE VD+GPVCF
Sbjct: 1425 TVFEYQTRKAMRLPIIDIAPYDIGGPDQEFGVDIGPVCF 1463
>ref|NP_031763.2| procollagen, type V, alpha 2 [Mus musculus]
Length = 1497
Score = 326 bits (835), Expect = 5e-89
Identities = 183/456 (40%), Positives = 238/456 (52%), Gaps = 13/456 (2%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
E G +G G+DG PGRDG G +G+R G RGE
Sbjct: 1043 EPGPEGPAGNDGTPGRDGAVGERGDRGDPGPAGLPGSQGAPGTPGPVGAPGDAGQRGEPG 1102
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQX 410
QG RG+KG+ GD+G RG G +G GLQGLPG G +G+Q
Sbjct: 1103 SRGPVGPPGRAGKRGLPGPQGPRGDKGDNGDRGDRGQKGHRGFTGLQGLPGPPGPNGEQG 1162
Query: 411 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXX-------- 566
K+G G G +GP G+R
Sbjct: 1163 SAGIPGPFGPRGPPGPVGPSGKEGNPGPLGPIGPPGVRGSVGEAGPEGPPGEPGPPGPPG 1222
Query: 567 --XXXXXXXXXXXXXYDFGYEGDF--YRADQPRSPPSLRPKDYEVDATLKSLNNQIETLL 734
YD + DQ +P D + TLKSL++QIET+
Sbjct: 1223 PPGHLTAALGDIMGHYDENMPDPLPEFTEDQA-APDDTNKTDPGIHVTLKSLSSQIETMR 1281
Query: 735 TPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQPEN 914
+P+GS+K+PARTC DL+L HP SG YWIDPNQG DAIKVYC+ TGETCI A P +
Sbjct: 1282 SPDGSKKHPARTCDDLKLCHPTKQSGEYWIDPNQGSAEDAIKVYCNMETGETCISANPAS 1341
Query: 915 IPAKNWYRN-SKVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLANHASQNIT 1091
+P K W+ + S K VW G +N G+QF Y + + TQ+ F+RLL+ ASQN+T
Sbjct: 1342 VPRKTWWASKSPDNKPVWYGLDMNRGSQFTYG-DYQSPNTAITQMTFLRLLSKEASQNLT 1400
Query: 1092 YHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWRKTII 1271
Y C+N++ YMD++ NLKKAV+L+GSND+E+ EGN RF YTVL D CSK+ KTI
Sbjct: 1401 YICRNTVGYMDDQAKNLKKAVVLKGSNDLEIKGEGNIRFRYTVLQDTCSKRNGNVGKTIF 1460
Query: 1272 EYKTNKPSRLPILDIAPLDIGDADQEVSVDVGPVCF 1379
EY+T +RLPI+D+ P+DIG+ADQE +D+GPVCF
Sbjct: 1461 EYRTQNVARLPIIDVGPVDIGNADQEFGLDIGPVCF 1496
Score = 54.3 bits (129), Expect = 4e-07
Identities = 40/154 (25%), Positives = 47/154 (30%)
Frame = +3
Query: 57 GRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXX 236
G G PG DG PGR+G G G G +GE
Sbjct: 256 GPPGKPGEDGEPGRNGNTGEVGFSGSPGARGFPGAPGLPGLKGHRGHKGLEGPKGEIGAP 315
Query: 237 XXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXX 416
G RG GE G GP+G PG +G +G+ G PG G G
Sbjct: 316 GAKGEAGPTGPMGAMGPLGPRGMPGERGRLGPQGAPGKRGAHGMPGKPGPMGPLGIPGSS 375
Query: 417 XXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 518
+G GQ G GP G
Sbjct: 376 GFPGNPGMKGEAGPTGARGPEGPQGQRGETGPPG 409
Score = 50.1 bits (118), Expect = 7e-06
Identities = 44/156 (28%), Positives = 49/156 (31%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
E G G G GP G DGQ G KGE HG G
Sbjct: 836 ENGPTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGPHGPHGVPGLKG 895
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQX 410
G G G PG GP G PG +G GL+G PG G GD+
Sbjct: 896 GRGTQGPPGATGFPGSAGRVGPPGPAGAPGPAGPAGEPGKEGPPGLRGDPGSHGRVGDR- 954
Query: 411 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 518
+DG+ G G GPAG
Sbjct: 955 -----GPAGPPGSPGDKGDPGEDGQPGPDGPPGPAG 985
>ref|NP_031755.1| procollagen, type XI, alpha 1 [Mus musculus]
Length = 1804
Score = 202 bits (513), Expect = 1e-51
Identities = 155/491 (31%), Positives = 200/491 (40%), Gaps = 48/491 (9%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
EAG G PG GPPG G G +GE+ K G G
Sbjct: 1350 EAGPPGPPGKRGPPGASGSEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPSGKPGPEG--- 1406
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKG---------HNGLQGL-- 377
G G+ G PG GP GLPGLKG H GL GL
Sbjct: 1407 ------LRGIPGPVGEQGLPGAAGQDGPPGPLGPPGLPGLKGDPGSKGEKGHPGLIGLIG 1460
Query: 378 -PGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXX 554
PG G GD+ G G PG GPAG +
Sbjct: 1461 PPGEQGEKGDRGLPGSQGSPGAKGDGGIPGPAGPIGPPGPPGLPGPAGPKGNKGSSGPT- 1519
Query: 555 XXXXXXXXXXXXXXXXXYDFGYEGDFYRADQPRSP----------PSLRPK--------- 677
G +GD P P P L PK
Sbjct: 1520 --------------------GQKGDSGMPGPPGPPGPPGEVIQPLPILSPKKTRRHTESI 1559
Query: 678 ---------DY-----EVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGY 815
DY E+ +L SL IE + P G++ NPARTC+DL+LSHP++ G
Sbjct: 1560 QGDAGDNILDYSDGMEEIFGSLNSLKQDIEHMKFPMGTQTNPARTCKDLQLSHPDFPDGE 1619
Query: 816 YWIDPNQGCTMDAIKVYCDFST-GETCI--RAQPENIPAKNWYRNSKVKKHVWLGETING 986
YWIDPNQGC+ D+ KVYC+F+ GETCI + E + +W K K W E G
Sbjct: 1620 YWIDPNQGCSGDSFKVYCNFTAGGETCIYPDKKSEGVRISSW---PKEKPGSWYSEFKRG 1676
Query: 987 GTQFEYNMEGVTTKEMATQLAFMRLLANHASQNITYHCKNSIAYMDEETGNLKKAVILQG 1166
++EG + Q+ F++LL A QN TY+C S A+ D +G+ KA+ G
Sbjct: 1677 KLLSYLDVEGNSIN--MVQMTFLKLLTASARQNFTYNCHQSAAWYDVLSGSYDKALRFLG 1734
Query: 1167 SNDVELVAEGNSRFTYTVLVDGCSKKTNEWRKTIIEYKTNKPSRLPILDIAPLDIGDADQ 1346
SND E+ E N L DGC+ + + KT+IE T K ++PI+D+ D GD +Q
Sbjct: 1735 SNDEEMSYENNPHI--KALYDGCASRKG-YEKTVIEINTPKIDQVPIIDVMINDFGDQNQ 1791
Query: 1347 EVSVDVGPVCF 1379
+ +VGP CF
Sbjct: 1792 KFGFEVGPACF 1802
Score = 53.1 bits (126), Expect = 9e-07
Identities = 43/163 (26%), Positives = 53/163 (32%), Gaps = 6/163 (3%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEX- 227
E G G G GP GRDG G G G++GE
Sbjct: 1086 EKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENG 1145
Query: 228 -----XXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAG 392
+G +G G+ GD+G RG PGL G GLQGLPG G
Sbjct: 1146 PPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGLPGPIGLQGLPGPPG 1205
Query: 393 HHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 521
G+ DG G PG++G G+
Sbjct: 1206 EKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSIGSVGV 1248
>ref|NP_056549.1| procollagen, type V, alpha 1 [Mus musculus]
Length = 1838
Score = 188 bits (478), Expect = 1e-47
Identities = 138/448 (30%), Positives = 190/448 (42%), Gaps = 5/448 (1%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
E G G+PG DGPPG G G G + + G+RG
Sbjct: 1448 EQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQGEKGDRG--- 1504
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQX 410
QGI G G G GP GLPG G G +G G G G+
Sbjct: 1505 ------LPGPQGSSGPKGDQGITGPSGPLGPPGPPGLPGPPGPKGAKGSSGPTGPKGEA- 1557
Query: 411 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG--IRXXXXXXXXXXXXXXXXXXXX 584
G G PG GP G I+
Sbjct: 1558 -----------------------GHPGLPGPPGPPGEVIQPLPIQASRTRRNIDASQLLD 1594
Query: 585 XXXXXXXYDFGYEGDFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPA 764
D+ AD E+ +L SL +IE + P G+++NPA
Sbjct: 1595 DGAGESYVDY--------ADGME----------EIFGSLNSLKLEIEQMKRPLGTQQNPA 1636
Query: 765 RTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFST-GETCIRAQPENIPAK--NWY 935
RTC+DL+L HP++ G YW+DPNQGC+ D+ KVYC+F+ G TC+ ++ A+ +W
Sbjct: 1637 RTCKDLQLCHPDFPDGEYWVDPNQGCSRDSFKVYCNFTAGGSTCVFPDKKSEGARITSW- 1695
Query: 936 RNSKVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLANHASQNITYHCKNSIA 1115
K W E G + EG Q+ F+RLL+ A QN+TY+C S+A
Sbjct: 1696 --PKENPGSWFSEFKRGKLLSYVDAEG--NPVGVVQMTFLRLLSASAHQNVTYNCYQSVA 1751
Query: 1116 YMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWRKTIIEYKTNKPS 1295
+ D TG+ KA+ GSND E+ + N LVDGC+ K ++KT++E T K
Sbjct: 1752 WQDAATGSYDKAIRFLGSNDEEMSYDNNPYI--RALVDGCATKKG-YQKTVLEIDTPKVE 1808
Query: 1296 RLPILDIAPLDIGDADQEVSVDVGPVCF 1379
++PI+DI D G+A Q+ +VGP CF
Sbjct: 1809 QVPIVDIMFNDFGEASQKFGFEVGPACF 1836
>ref|NP_058615.1| procollagen, type V, alpha 3 [Mus musculus]
Length = 1739
Score = 167 bits (424), Expect = 2e-41
Identities = 120/382 (31%), Positives = 172/382 (45%), Gaps = 19/382 (4%)
Frame = +3
Query: 291 GIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXX 470
G+ G GE G+KG +GLPG++G GLQG PGL G G
Sbjct: 1408 GLIGPPGEAGEKGDQGLPGVQGPPGLQGDPGLPGPVGSL--------------------- 1446
Query: 471 XKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXXXXXXXYDFGYEGDFYRADQP 650
G G PG VGP G + G GD A P
Sbjct: 1447 ---GHPGPPGVVGPLGQKGSKGSPGS---------------------LGPRGDPGPAGPP 1482
Query: 651 RSPPS----------------LRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDL 782
P S L EV A+L SL+ +++ L P G+ ++P CR+L
Sbjct: 1483 GPPGSPAEVHGLRRRRSVTDTLEGGLEEVMASLNSLSLELQQLQRPLGTAESPGLMCREL 1542
Query: 783 RLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFST-GETCIRAQP--ENIPAKNWYRNSKVK 953
HP G YWIDPNQGC DA KV+C+F+ GETC+ E + +W S+ K
Sbjct: 1543 HRDHPHLPDGEYWIDPNQGCARDAFKVFCNFTAGGETCLYPDKKFETVKLASW---SREK 1599
Query: 954 KHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLANHASQNITYHCKNSIAYMDEET 1133
W T G +F Y ++ + QL F++LL+ A Q TY C+NS+A++DE
Sbjct: 1600 PGGWY-STFRRGKKFSY-VDADGSPVNVVQLTFLKLLSAAAHQRFTYICQNSVAWLDEAA 1657
Query: 1134 GNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWRKTIIEYKTNKPSRLPILD 1313
G+ + ++ QG+N EL + T V DGC + + KT+ E+ ++ LP+ D
Sbjct: 1658 GDHRHSIRFQGTNWEELSFNQTTAATIKVSHDGCRVRKGQ-AKTLFEF-SSSVGFLPLWD 1715
Query: 1314 IAPLDIGDADQEVSVDVGPVCF 1379
+A D G +Q+ ++G +CF
Sbjct: 1716 VAASDFGQTNQKFGFELGSICF 1737
Score = 51.6 bits (122), Expect = 3e-06
Identities = 44/154 (28%), Positives = 50/154 (32%)
Frame = +3
Query: 57 GRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXX 236
GR G GS G PG G G KG+R G RG+
Sbjct: 796 GRPGPKGSIGFPGPLGPLGEKGKRGKAGQPGEEGERGTP------------GTRGDRGQP 843
Query: 237 XXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXX 416
G GEKG PG +GP G PG KG G QG G++GH G +
Sbjct: 844 GATGQPGPKGDVGQNGSPGPPGEKGLPGLQGPPGFPGPKGPPGPQGKDGISGHPGQRGEL 903
Query: 417 XXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 518
K G G G GP G
Sbjct: 904 GFQGLTGPPGPAGVLGPQGKVGDVGPLGERGPPG 937
Score = 50.4 bits (119), Expect = 6e-06
Identities = 40/162 (24%), Positives = 51/162 (31%), Gaps = 6/162 (3%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
E G G G+ GP G+DG G G + G++G+
Sbjct: 1037 EKGSPGERGTPGPTGKDGIPGPPGLQGPSGAAGPSGEEGDKGEVGMPGHKGSKGDKGDAG 1096
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEP------GDKGPRGLPGLKGHNGLQGLPGLAG 392
G +G +G P GD G RG G+ G GLQGLPG G
Sbjct: 1097 PPGPTGIRGPAGHSGLPGADGAQGRRGPPGLFGQKGDDGVRGFVGVIGPPGLQGLPGPPG 1156
Query: 393 HHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 518
G+ +G G PG VG G
Sbjct: 1157 EKGEVGDVGSMGPHGAPGPRGPPGPSGSEGPPGLPGGVGQPG 1198
>ref|NP_034056.1| procollagen, type XI, alpha 2 [Mus musculus]
Length = 1650
Score = 144 bits (364), Expect = 2e-34
Identities = 123/444 (27%), Positives = 172/444 (38%), Gaps = 1/444 (0%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
+ GR G G GPPG G G G R G +GE
Sbjct: 1290 QQGRPGATGQAGPPGPVGPPGLPGLRGDA------------------------GAKGEKG 1325
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQX 410
+G+ G +G PG KG G+PG G G G PGL G G +
Sbjct: 1326 HPGLIGLIGPTGEQGEKGDRGLPGPQGSPGQKGETGIPGASGPIGPGGPPGLPGPSGPKG 1385
Query: 411 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXX 590
+ G G PG GP G
Sbjct: 1386 AKGATGPAGPKG---------EKGVQGPPGHPGPPGEVIQPLPIQMPKKTRRSVDGSKLI 1436
Query: 591 XXXXXYDFGYEGDFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPART 770
G P SP L E+ +L SL +IE + P G++ +PART
Sbjct: 1437 QDEEAVPTG--------GAPGSPAGLE----EIFGSLDSLREEIEQMRRPAGTQDSPART 1484
Query: 771 CRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFST-GETCIRAQPENIPAKNWYRNSK 947
C+DL+L HPE G YW+DPNQGC DA +V+C+F+ GETC+ + +
Sbjct: 1485 CQDLKLCHPELPDGEYWVDPNQGCARDAFRVFCNFTAGGETCVTPRDD------------ 1532
Query: 948 VKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLANHASQNITYHCKNSIAYMDE 1127
TQF Y ++ + QL F+RLL+ A Q+++Y C
Sbjct: 1533 -------------VTQFSY-VDSEGSPVGVVQLTFLRLLSVSAHQDVSYPCSGV-----S 1573
Query: 1128 ETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWRKTIIEYKTNKPSRLPI 1307
+ G LK L+G+N+ EL E + DGC + +T++E +T +LP+
Sbjct: 1574 QDGPLK----LRGANEDELSPETSP--YVKEFRDGCQTQQG---RTVLEVRTPVLEQLPV 1624
Query: 1308 LDIAPLDIGDADQEVSVDVGPVCF 1379
LD + D+G + V +GPVCF
Sbjct: 1625 LDASFADLGAPTRRGGVLLGPVCF 1648
Score = 57.8 bits (138), Expect = 4e-08
Identities = 44/156 (28%), Positives = 49/156 (31%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
E G+ G PG G PGR G G G G RG+
Sbjct: 705 EKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRG 764
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQX 410
G GE+G PG +GP G PG KG G G GL GH G +
Sbjct: 765 PRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPAGKDGLPGHPGQR- 823
Query: 411 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 518
K G G PG VGP G
Sbjct: 824 --------------GEVGFQGKTGPPGPPGVVGPQG 845
Score = 55.1 bits (131), Expect = 2e-07
Identities = 42/157 (26%), Positives = 52/157 (33%), Gaps = 3/157 (1%)
Frame = +3
Query: 57 GRDGNPGSDGPPG---RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEX 227
G +G PG GPPG +DG GH G+R + G GE
Sbjct: 797 GPNGFPGPKGPPGPAGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGTAGESGPMGER 856
Query: 228 XXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQ 407
+G +G+ G PG G G GL+G G +GLPG AG G +
Sbjct: 857 GHSGPPGPPGEQGLPGTSGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLK 916
Query: 408 XXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 518
G G PG GP G
Sbjct: 917 GNEGPAGPPGPAGSPGERGAAGSGGPIGPPGRPGPQG 953
>ref|NP_079961.2| procollagen, type XXVII, alpha 1 [Mus musculus]
Length = 1845
Score = 139 bits (350), Expect = 9e-33
Identities = 117/450 (26%), Positives = 172/450 (38%), Gaps = 8/450 (1%)
Frame = +3
Query: 54 AGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXX 233
AGR GNPG G PG G G KGE + G++G+
Sbjct: 1456 AGRRGNPGVAGLPGAQGPPGFKGESGLPGQLGPPGKRGTEGGTGLPGNQGEPGSKGQPGD 1515
Query: 234 XXXXXXXXXXXXXXXXXXQGIRGEKGEPGD------KGPRGLPGLKGHNGLQGLPGLAGH 395
G+ G KG PGD +GPRG PGL G G+ G PG+ G
Sbjct: 1516 SGEMGFPGVA---------GLFGPKGPPGDIGFKGIQGPRGPPGLMGKEGIIGPPGMLGP 1566
Query: 396 HGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXX 575
G G G G GP G
Sbjct: 1567 SG------LPGPKGDRGSRGDLGLQGPRGPPGPRGRPGPPGPPWHPIQFQQDDLGAAFQT 1620
Query: 576 XXXXXXXXXXYDFGYEGDFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRK 755
+ Y D DQ E+ TL L+N I+++ TP G+++
Sbjct: 1621 WMDAQGAVRSEGYSYP-DQLALDQGG----------EIFKTLHYLSNLIQSIKTPLGTKE 1669
Query: 756 NPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFST-GETCIRAQPENIPAKNW 932
NPAR CRDL + G YW+DPN GC+ D I+V C+F+ G+TC++ +K
Sbjct: 1670 NPARVCRDLMDCEQRMADGTYWVDPNLGCSSDTIEVSCNFTQGGQTCLK---PITASKAE 1726
Query: 933 YRNSKVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLANHASQNITYHCKNSI 1112
+ S+V Q+ F+ LL++ +Q+IT HC N
Sbjct: 1727 FAVSRV------------------------------QMNFLHLLSSEGTQHITIHCLNMT 1756
Query: 1113 AYMD-EETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWRKTIIEYKTNK 1289
+ + + ++AV + N V E +F V +DGC W +T+ ++T
Sbjct: 1757 VWQEGPGRSSARQAVRFRAWNG--QVFEAGGQFRPEVSMDGCKVHDGRWHQTLFTFRTQD 1814
Query: 1290 PSRLPILDIAPLDIGDADQEVSVDVGPVCF 1379
P +LPI+ + L + ++ ++VGP CF
Sbjct: 1815 PQQLPIVSVDNLPPVSSGKQYRLEVGPACF 1844
Score = 54.7 bits (130), Expect = 3e-07
Identities = 47/169 (27%), Positives = 56/169 (33%), Gaps = 13/169 (7%)
Frame = +3
Query: 57 GRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXX 236
G DG G G PG DG+ G KG+ K G +G+
Sbjct: 1183 GPDGLKGDRGDPGPDGEHGEKGQEGLKGEDGSPGPPGITGVPGREGKPGKQGEKGQRGAK 1242
Query: 237 XXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHN------------GLQGLP 380
QG GE G PG+ GP G PG KG G QG P
Sbjct: 1243 GAKGH------------QGYLGEMGIPGEPGPPGTPGPKGSRGTLGPTGAPGRMGAQGEP 1290
Query: 381 GLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXK-DGRTGQPGAVGPAGIR 524
GLAG++G + K +G G PG GP G R
Sbjct: 1291 GLAGYNGHKGITGPLGPPGPKGEKGDQGEDGKTEGPPGPPGDRGPVGDR 1339
Score = 52.8 bits (125), Expect = 1e-06
Identities = 50/181 (27%), Positives = 58/181 (32%), Gaps = 24/181 (13%)
Frame = +3
Query: 54 AGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXX 233
AG +G+ G GP G G G KG++ G+RG
Sbjct: 1293 AGYNGHKGITGPLGPPGPKGEKGDQGEDGKTEGPPG--------------PPGDRGPVGD 1338
Query: 234 XXXXXXXXXXXXXXXXXXQGIRGE---KGEPGDKGPRGLPGLKGHNG------------- 365
QG+RGE +G+PG GPRG PG KG G
Sbjct: 1339 RGDRGEPGDPGYPGQEGVQGLRGEPGQQGQPGHPGPRGRPGPKGSKGEEGPKGKPGKAGP 1398
Query: 366 --------LQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 521
LQGLPG G G Q G G PG VGPAG
Sbjct: 1399 SGRRGTQGLQGLPGPRGVVGRQGPEGTAGSDGIPGRDGRPGYQGDQGNDGDPGPVGPAGR 1458
Query: 522 R 524
R
Sbjct: 1459 R 1459
Score = 49.7 bits (117), Expect = 1e-05
Identities = 41/161 (25%), Positives = 51/161 (31%), Gaps = 3/161 (1%)
Frame = +3
Query: 51 EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 230
E G G PGS G PG G GH+G R + G +G
Sbjct: 1028 EPGPWGPPGSRGLPGMRGAKGHRGPRGPDGPAGEQGSKGLKGRVGPRGRPGQPGQQGAAG 1087
Query: 231 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGH---HG 401
G +G GEPG +GP+G G G G +G PG G G
Sbjct: 1088 ERGHSGAKGFLGIPGPSGPPGAKGLPGEPGSQGPQGPVGPPGEMGPKGPPGAVGEPGLPG 1147
Query: 402 DQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 524
D + G G G VGP G++
Sbjct: 1148 DSGMKGDLGPLGPPGEQGLIGQRGEPGLEGDHGPVGPDGLK 1188
Database: RefSeqMP
Posted date: Aug 2, 2006 12:58 AM
Number of letters in database: 21,768,885
Number of sequences in database: 45,328
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,198,573
Number of Sequences: 45328
Number of extensions: 1250503
Number of successful extensions: 15470
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 3951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9621
length of database: 21,768,885
effective HSP length: 109
effective length of database: 16,828,133
effective search space used: 7808253712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)