Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0223_E01
(1388 letters)
Database: RefSeqBP
33,508 sequences; 16,112,626 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_991368.1| lysosomal-associated protein transmembrane 4 al... 354 1e-97
Alignment gi|NP_991371.1| similar to lysosomal associated protein transme... 155 7e-38
Alignment gi|XP_602449.2| PREDICTED: similar to lysosomal-associated prot... 121 1e-27
>ref|NP_991368.1| lysosomal-associated protein transmembrane 4 alpha [Bos taurus]
Length = 233
Score = 354 bits (908), Expect = 1e-97
Identities = 173/201 (86%), Positives = 175/201 (87%)
Frame = +3
Query: 189 GCCHVRTGTIILGTWYMVINLLMAILLTVEVTHPNSVPAVNIQYGVIGNYYSSERMADNA 368
GCCHVRTGTIILGTWYMV+NLLMAILLTVEVTHPNS+PAVNIQY VIGNYYSSERMADNA
Sbjct: 21 GCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSMPAVNIQYEVIGNYYSSERMADNA 80
Query: 369 CVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIKEY 548
CVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIKEY
Sbjct: 81 CVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIKEY 140
Query: 549 LDQLPDFPYKXXXXXXXXXXXXXXXXXXXXXXXXXKAYLINCVWNCYKYINNRNMPEIAV 728
LDQLPDFPYK KAYLINCVWNCYKYINNRNMPEIAV
Sbjct: 141 LDQLPDFPYKDDLLALDSSCLLFIVLVFFALFIIFKAYLINCVWNCYKYINNRNMPEIAV 200
Query: 729 YPAFEAPPQYVLPTYEMAVKM 791
YPAFEAPPQYVLPTYEMAVKM
Sbjct: 201 YPAFEAPPQYVLPTYEMAVKM 221
>ref|NP_991371.1| similar to lysosomal associated protein transmembrane 4 beta [Bos
taurus]
Length = 226
Score = 155 bits (392), Expect = 7e-38
Identities = 81/199 (40%), Positives = 114/199 (57%), Gaps = 2/199 (1%)
Frame = +3
Query: 192 CCHVRTGTIILGTWYMVINLLMAILLTVEVTHPNSVPAVNIQYGVIGNYYSSERMAD-NA 368
CCHVRTGTI+LG WY+++N ++ ++L + P+ + + G G++ E M D N
Sbjct: 18 CCHVRTGTILLGVWYLILNAVVLLILLSALADPDHYHFSSSELG--GDF---EFMDDANM 72
Query: 369 CVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIKEY 548
C+ A+SVLM +I +M YGA + W+IPFFCY++FDF L+ LVA++ L Y I+EY
Sbjct: 73 CIAIAISVLMILICAMATYGAYKQRAAWIIPFFCYQIFDFALNTLVAVTVLVYPNSIQEY 132
Query: 549 LDQL-PDFPYKXXXXXXXXXXXXXXXXXXXXXXXXXKAYLINCVWNCYKYINNRNMPEIA 725
+ QL PDFPYK K YLI+CVWNCY+YIN RN ++
Sbjct: 133 IRQLPPDFPYKDDIMSVNPTCLVLIILLFISIILAFKGYLISCVWNCYRYINGRNSSDVL 192
Query: 726 VYPAFEAPPQYVLPTYEMA 782
VY +LP Y+ A
Sbjct: 193 VY-VTSNDSTVLLPPYDDA 210
>ref|XP_602449.2| PREDICTED: similar to lysosomal-associated protein transmembrane 4B
(predicted) [Bos taurus]
Length = 185
Score = 121 bits (304), Expect = 1e-27
Identities = 64/175 (36%), Positives = 91/175 (52%), Gaps = 2/175 (1%)
Frame = +3
Query: 213 TIILGTWYMVINLLMAILLTVEVTHPNSVPAVNIQYGVIGNYYSSERMAD-NACVLFAVS 389
TI+LG WY+++N ++ ++L + P + + G++ E M D N C+ +S
Sbjct: 8 TILLGVWYLIVNAVVLLILLNTLADPYHYHFSRSE--LRGDF---EFMDDANMCIAIVIS 62
Query: 390 VLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIKEYLDQL-PD 566
LM +I +M YGA W+IPFFCYR+FDF L+ LV ++ L Y I+EY QL PD
Sbjct: 63 FLMILICAMATYGAYKQHAAWIIPFFCYRIFDFALNTLVVVTILVYPNSIQEYTRQLPPD 122
Query: 567 FPYKXXXXXXXXXXXXXXXXXXXXXXXXXKAYLINCVWNCYKYINNRNMPEIAVY 731
PYK K YLI+CVWNCY+Y RN ++ VY
Sbjct: 123 IPYKDDIMSVNPTCLVLVILLFISIILAFKGYLISCVWNCYRYTTGRNSSDVLVY 177
Database: RefSeqBP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 16,112,626
Number of sequences in database: 33,508
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,027,596
Number of Sequences: 33508
Number of extensions: 1135897
Number of successful extensions: 3269
Number of sequences better than 1.0e-05: 3
Number of HSP's better than 0.0 without gapping: 2934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3263
length of database: 16,112,626
effective HSP length: 105
effective length of database: 12,594,286
effective search space used: 4496160102
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0223_E01
(1388 letters)
Database: RefSeqCP
33,732 sequences; 19,266,565 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532885.1| PREDICTED: similar to lysosomal-associated prot... 354 1e-97
Alignment gi|XP_532277.2| PREDICTED: similar to lysosomal-associated tran... 150 3e-36
>ref|XP_532885.1| PREDICTED: similar to lysosomal-associated protein transmembrane 4
alpha [Canis familiaris]
Length = 233
Score = 354 bits (908), Expect = 1e-97
Identities = 173/201 (86%), Positives = 175/201 (87%)
Frame = +3
Query: 189 GCCHVRTGTIILGTWYMVINLLMAILLTVEVTHPNSVPAVNIQYGVIGNYYSSERMADNA 368
GCCHVRTGTIILGTWYMV+NLLMAILLTVEVTHPNS+PAVNIQY VIGNYYSSERMADNA
Sbjct: 21 GCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSMPAVNIQYEVIGNYYSSERMADNA 80
Query: 369 CVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIKEY 548
CVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIKEY
Sbjct: 81 CVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIKEY 140
Query: 549 LDQLPDFPYKXXXXXXXXXXXXXXXXXXXXXXXXXKAYLINCVWNCYKYINNRNMPEIAV 728
LDQLPDFPYK KAYLINCVWNCYKYINNRNMPEIAV
Sbjct: 141 LDQLPDFPYKDDLLALDSSCLLFIVLVFFALFIIFKAYLINCVWNCYKYINNRNMPEIAV 200
Query: 729 YPAFEAPPQYVLPTYEMAVKM 791
YPAFEAPPQYVLPTYEMAVKM
Sbjct: 201 YPAFEAPPQYVLPTYEMAVKM 221
>ref|XP_532277.2| PREDICTED: similar to lysosomal-associated transmembrane protein 4
beta [Canis familiaris]
Length = 393
Score = 150 bits (379), Expect = 3e-36
Identities = 78/199 (39%), Positives = 113/199 (56%), Gaps = 2/199 (1%)
Frame = +3
Query: 192 CCHVRTGTIILGTWYMVINLLMAILLTVEVTHPNSVPAVNIQYGVIGNYYSSERMAD-NA 368
CCHVRTG I+LG WY++IN ++ ++L + P+ + + G G++ E M D N
Sbjct: 185 CCHVRTGAILLGVWYLIINAVVLLILLSALADPDQYHFSSSELG--GDF---EFMDDANM 239
Query: 369 CVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIKEY 548
C+ A+S+LM +I +M YGA + W+IPFFCY++FDF L+ LVA++ L Y I+EY
Sbjct: 240 CIAIAISLLMILICAMATYGAYKQRAAWIIPFFCYQIFDFALNTLVAVTVLVYPNSIQEY 299
Query: 549 LDQL-PDFPYKXXXXXXXXXXXXXXXXXXXXXXXXXKAYLINCVWNCYKYINNRNMPEIA 725
+ QL P+FPY+ K YLI+CVWNCY+YIN RN ++
Sbjct: 300 IRQLPPNFPYRDDIMSVNPTCLVLIILLFISIILTFKGYLISCVWNCYRYINGRNSSDVL 359
Query: 726 VYPAFEAPPQYVLPTYEMA 782
VY +LP Y+ A
Sbjct: 360 VY-VTSNDTTVLLPPYDDA 377
Database: RefSeqCP
Posted date: Aug 1, 2006 9:25 PM
Number of letters in database: 19,266,565
Number of sequences in database: 33,732
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,997,636
Number of Sequences: 33732
Number of extensions: 1338852
Number of successful extensions: 3940
Number of sequences better than 1.0e-05: 2
Number of HSP's better than 0.0 without gapping: 3472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3932
length of database: 19,266,565
effective HSP length: 106
effective length of database: 15,690,973
effective search space used: 5585986388
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0223_E01
(1388 letters)
Database: RefSeqHP
39,411 sequences; 17,774,539 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055528.1| lysosomal-associated protein transmembrane 4 al... 352 3e-97
Alignment gi|NP_060877.3| lysosomal associated transmembrane protein 4 be... 152 5e-37
>ref|NP_055528.1| lysosomal-associated protein transmembrane 4 alpha [Homo sapiens]
Length = 233
Score = 352 bits (904), Expect = 3e-97
Identities = 172/201 (85%), Positives = 175/201 (87%)
Frame = +3
Query: 189 GCCHVRTGTIILGTWYMVINLLMAILLTVEVTHPNSVPAVNIQYGVIGNYYSSERMADNA 368
GCCHVRTGTIILGTWYMV+NLLMAILLTVEVTHPNS+PAVNIQY VIGNYYSSERMADNA
Sbjct: 21 GCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSMPAVNIQYEVIGNYYSSERMADNA 80
Query: 369 CVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIKEY 548
CVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIKEY
Sbjct: 81 CVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIKEY 140
Query: 549 LDQLPDFPYKXXXXXXXXXXXXXXXXXXXXXXXXXKAYLINCVWNCYKYINNRNMPEIAV 728
LDQLPDFPYK KAYLINCVWNCYKYINNRN+PEIAV
Sbjct: 141 LDQLPDFPYKDDLLALDSSCLLFIVLVFFALFIIFKAYLINCVWNCYKYINNRNVPEIAV 200
Query: 729 YPAFEAPPQYVLPTYEMAVKM 791
YPAFEAPPQYVLPTYEMAVKM
Sbjct: 201 YPAFEAPPQYVLPTYEMAVKM 221
>ref|NP_060877.3| lysosomal associated transmembrane protein 4 beta [Homo sapiens]
Length = 317
Score = 152 bits (385), Expect = 5e-37
Identities = 82/205 (40%), Positives = 113/205 (55%), Gaps = 8/205 (3%)
Frame = +3
Query: 192 CCHVRTGTIILGTWYMVINLLMAILLTVEVTHPNSVPAVNIQYGVIGNYYSSERMAD--- 362
CCHVRTGTI+LG WY++IN ++ ++L + P+ QY N+ SSE D
Sbjct: 109 CCHVRTGTILLGVWYLIINAVVLLILLSALADPD-------QY----NFSSSELGGDFEF 157
Query: 363 ----NACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYL 530
N C+ A+S+LM +I +M YGA + W+IPFFCY++FDF L+ LVAI+ L Y
Sbjct: 158 MDDANMCIAIAISLLMILICAMATYGAYKQRAAWIIPFFCYQIFDFALNMLVAITVLIYP 217
Query: 531 PRIKEYLDQL-PDFPYKXXXXXXXXXXXXXXXXXXXXXXXXXKAYLINCVWNCYKYINNR 707
I+EY+ QL P+FPY+ K YLI+CVWNCY+YIN R
Sbjct: 218 NSIQEYIRQLPPNFPYRDDVMSVNPTCLVLIILLFISIILTFKGYLISCVWNCYRYINGR 277
Query: 708 NMPEIAVYPAFEAPPQYVLPTYEMA 782
N ++ VY +LP Y+ A
Sbjct: 278 NSSDVLVY-VTSNDTTVLLPPYDDA 301
Database: RefSeqHP
Posted date: Aug 2, 2006 12:57 AM
Number of letters in database: 17,774,539
Number of sequences in database: 39,411
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,755,951
Number of Sequences: 39411
Number of extensions: 1313095
Number of successful extensions: 3964
Number of sequences better than 1.0e-05: 2
Number of HSP's better than 0.0 without gapping: 3497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3956
length of database: 17,774,539
effective HSP length: 105
effective length of database: 13,636,384
effective search space used: 4868189088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqSP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0223_E01
(1388 letters)
Database: RefSeqSP
1040 sequences; 434,620 total letters
Searching...done
***** No hits found ******
Database: RefSeqSP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 434,620
Number of sequences in database: 1040
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,236,176
Number of Sequences: 1040
Number of extensions: 30739
Number of successful extensions: 87
Number of sequences better than 1.0e-05: 0
Number of HSP's better than 0.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 434,620
effective HSP length: 80
effective length of database: 351,420
effective search space used: 134242440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0223_E01
(1388 letters)
Database: RefSeqMP
45,328 sequences; 21,768,885 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032666.2| lysosomal-associated protein transmembrane 4A [... 349 e-107
Alignment gi|NP_277056.1| lysosomal-associated protein transmembrane 4B [... 150 2e-36
Alignment gi|XP_989191.1| PREDICTED: similar to Lysosomal-associated mult... 50 4e-06
Alignment gi|NP_034816.1| lysosomal-associated protein transmembrane 5 [M... 50 4e-06
Alignment gi|XP_978299.1| PREDICTED: similar to Lysosomal-associated mult... 50 4e-06
Alignment gi|XP_978422.1| PREDICTED: similar to Lysosomal-associated mult... 50 4e-06
Alignment gi|XP_978385.1| PREDICTED: similar to Lysosomal-associated mult... 50 4e-06
>ref|NP_032666.2| lysosomal-associated protein transmembrane 4A [Mus musculus]
Length = 308
Score = 349 bits (895), Expect(2) = e-107
Identities = 170/201 (84%), Positives = 174/201 (86%)
Frame = +3
Query: 189 GCCHVRTGTIILGTWYMVINLLMAILLTVEVTHPNSVPAVNIQYGVIGNYYSSERMADNA 368
GCCHVRTGTIILGTWYMV+NLLMAILLTVEVTHPNS+PAVNIQY VIGNYYSSERMADNA
Sbjct: 96 GCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSMPAVNIQYEVIGNYYSSERMADNA 155
Query: 369 CVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIKEY 548
CVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIKEY
Sbjct: 156 CVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIKEY 215
Query: 549 LDQLPDFPYKXXXXXXXXXXXXXXXXXXXXXXXXXKAYLINCVWNCYKYINNRNMPEIAV 728
LDQLPDFPYK KAYLINCVWNCYKYINNRN+PEIAV
Sbjct: 216 LDQLPDFPYKDDLLALDSSCLLFIVLVFFVVFIIFKAYLINCVWNCYKYINNRNVPEIAV 275
Query: 729 YPAFEAPPQYVLPTYEMAVKM 791
YPAFE PPQYVLPTYEMAVK+
Sbjct: 276 YPAFETPPQYVLPTYEMAVKI 296
Score = 60.8 bits (146), Expect(2) = e-107
Identities = 30/45 (66%), Positives = 32/45 (71%)
Frame = +2
Query: 56 EDASFGFGRFERAVWYQPLGGRRLSGARPRTRPTSFPMVSMTFKR 190
EDASFG G R VW +PLG + LSGA RTRP F MVSMTFKR
Sbjct: 39 EDASFGCGHRRRVVWVEPLGRKLLSGAWARTRPARFRMVSMTFKR 83
>ref|NP_277056.1| lysosomal-associated protein transmembrane 4B [Mus musculus]
Length = 227
Score = 150 bits (380), Expect = 2e-36
Identities = 80/199 (40%), Positives = 110/199 (55%), Gaps = 2/199 (1%)
Frame = +3
Query: 192 CCHVRTGTIILGTWYMVINLLMAILLTVEVTHPNSVPAVNIQYGVIGNYYSSERMAD-NA 368
CCHVRTGTI+LG WY++IN ++ ++L + PN + G G + E M D N
Sbjct: 18 CCHVRTGTILLGVWYLIINAVVLLILLSALADPNQYHFSGSELG--GEF---EFMDDANM 72
Query: 369 CVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIKEY 548
C+ A+S+LM +I +M YGA W+IPFFCY++FDF L+ LVAI+ L Y I+EY
Sbjct: 73 CIAIAISLLMILICAMATYGAYKQHAAWIIPFFCYQIFDFALNTLVAITVLVYPNSIQEY 132
Query: 549 LDQL-PDFPYKXXXXXXXXXXXXXXXXXXXXXXXXXKAYLINCVWNCYKYINNRNMPEIA 725
+ QL P FPY+ K YLI+CVW+CY+YIN RN ++
Sbjct: 133 IRQLPPSFPYRDDIMSVNPTCLVLIILLFIGILLTLKGYLISCVWSCYRYINGRNSSDVL 192
Query: 726 VYPAFEAPPQYVLPTYEMA 782
VY +LP Y+ A
Sbjct: 193 VY-VTSNDTTVLLPPYDDA 210
>ref|XP_989191.1| PREDICTED: similar to Lysosomal-associated multitransmembrane
protein (Retinoic acid-inducible E3 protein) [Mus
musculus]
Length = 252
Score = 50.4 bits (119), Expect = 4e-06
Identities = 40/126 (31%), Positives = 61/126 (48%), Gaps = 2/126 (1%)
Frame = +3
Query: 162 SRWCP*LSSGCC-HVRTGTIILGTWYMVINLLMAILLTVEVTHPN-SVPAVNIQYGVIGN 335
SR P + CC ++R TI L +++V+++L+ I VEV S + Y
Sbjct: 3 SRAAPVRQTCCCFNIRVATIALAIYHIVMSVLLFIEHVVEVARGKVSCRFFKMPY----- 57
Query: 336 YYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAIS 515
RMAD + VL FIIS L++G + + +LIPF ++ DF+L L +
Sbjct: 58 ----LRMADLLSSFLLIGVL-FIISISLLFGVVKNREKYLIPFLSLQIMDFLLCLLTLLG 112
Query: 516 SLTYLP 533
S LP
Sbjct: 113 SYIELP 118
>ref|NP_034816.1| lysosomal-associated protein transmembrane 5 [Mus musculus]
Length = 261
Score = 50.4 bits (119), Expect = 4e-06
Identities = 40/126 (31%), Positives = 61/126 (48%), Gaps = 2/126 (1%)
Frame = +3
Query: 162 SRWCP*LSSGCC-HVRTGTIILGTWYMVINLLMAILLTVEVTHPN-SVPAVNIQYGVIGN 335
SR P + CC ++R TI L +++V+++L+ I VEV S + Y
Sbjct: 3 SRAAPVRQTCCCFNIRVATIALAIYHIVMSVLLFIEHVVEVARGKVSCRFFKMPY----- 57
Query: 336 YYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAIS 515
RMAD + VL FIIS L++G + + +LIPF ++ DF+L L +
Sbjct: 58 ----LRMADLLSSFLLIGVL-FIISISLLFGVVKNREKYLIPFLSLQIMDFLLCLLTLLG 112
Query: 516 SLTYLP 533
S LP
Sbjct: 113 SYIELP 118
>ref|XP_978299.1| PREDICTED: similar to Lysosomal-associated multitransmembrane
protein (Retinoic acid-inducible E3 protein) isoform 2
[Mus musculus]
Length = 271
Score = 50.4 bits (119), Expect = 4e-06
Identities = 37/126 (29%), Positives = 63/126 (50%), Gaps = 2/126 (1%)
Frame = +3
Query: 162 SRWCP*LSSGCC-HVRTGTIILGTWYMVINLLMAILLTVEVTHPN-SVPAVNIQYGVIGN 335
SR P + CC ++R TI L +++V+++L+ I VEV S + Y +
Sbjct: 3 SRAAPVRQTCCCFNIRVATIALAIYHIVMSVLLFIEHVVEVARGKVSCRFFKMPYLRMAL 62
Query: 336 YYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAIS 515
S +A + F + ++FIIS L++G + + +LIPF ++ DF+L L +
Sbjct: 63 PQSLPCLAADLLSSFLLIGVLFIISISLLFGVVKNREKYLIPFLSLQIMDFLLCLLTLLG 122
Query: 516 SLTYLP 533
S LP
Sbjct: 123 SYIELP 128
>ref|XP_978422.1| PREDICTED: similar to Lysosomal-associated multitransmembrane
protein (Retinoic acid-inducible E3 protein) isoform 5
[Mus musculus]
Length = 261
Score = 50.4 bits (119), Expect = 4e-06
Identities = 40/126 (31%), Positives = 61/126 (48%), Gaps = 2/126 (1%)
Frame = +3
Query: 162 SRWCP*LSSGCC-HVRTGTIILGTWYMVINLLMAILLTVEVTHPN-SVPAVNIQYGVIGN 335
SR P + CC ++R TI L +++V+++L+ I VEV S + Y
Sbjct: 3 SRAAPVRQTCCCFNIRVATIALAIYHIVMSVLLFIEHVVEVARGKVSCRFFKMPY----- 57
Query: 336 YYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAIS 515
RMAD + VL FIIS L++G + + +LIPF ++ DF+L L +
Sbjct: 58 ----LRMADLLSSFLLIGVL-FIISISLLFGVVKNREKYLIPFLSLQIMDFLLCLLTLLG 112
Query: 516 SLTYLP 533
S LP
Sbjct: 113 SYIELP 118
>ref|XP_978385.1| PREDICTED: similar to Lysosomal-associated multitransmembrane
protein (Retinoic acid-inducible E3 protein) isoform 4
[Mus musculus]
Length = 261
Score = 50.4 bits (119), Expect = 4e-06
Identities = 40/126 (31%), Positives = 61/126 (48%), Gaps = 2/126 (1%)
Frame = +3
Query: 162 SRWCP*LSSGCC-HVRTGTIILGTWYMVINLLMAILLTVEVTHPN-SVPAVNIQYGVIGN 335
SR P + CC ++R TI L +++V+++L+ I VEV S + Y
Sbjct: 3 SRAAPVRQTCCCFNIRVATIALAIYHIVMSVLLFIEHVVEVARGKVSCRFFKMPY----- 57
Query: 336 YYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAIS 515
RMAD + VL FIIS L++G + + +LIPF ++ DF+L L +
Sbjct: 58 ----LRMADLLSSFLLIGVL-FIISISLLFGVVKNREKYLIPFLSLQIMDFLLCLLTLLG 112
Query: 516 SLTYLP 533
S LP
Sbjct: 113 SYIELP 118
Database: RefSeqMP
Posted date: Aug 2, 2006 12:58 AM
Number of letters in database: 21,768,885
Number of sequences in database: 45,328
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,915,551
Number of Sequences: 45328
Number of extensions: 1536349
Number of successful extensions: 4261
Number of sequences better than 1.0e-05: 7
Number of HSP's better than 0.0 without gapping: 3785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4254
length of database: 21,768,885
effective HSP length: 107
effective length of database: 16,918,789
effective search space used: 6006170095
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)