Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PBL01_0074_B12
(2620 letters)
Database: RefSeqBP
33,508 sequences; 16,112,626 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_883815.1| PREDICTED: similar to F-box protein FBW7 isofor... 1211 0.0
Alignment gi|XP_613742.2| PREDICTED: similar to F-box protein FBW7 isofor... 1211 0.0
Alignment gi|XP_883690.1| PREDICTED: similar to F-box protein FBW7 isofor... 1093 0.0
Alignment gi|XP_883785.1| PREDICTED: similar to F-box protein FBW7 isofor... 1092 0.0
Alignment gi|XP_883749.1| PREDICTED: similar to F-box protein FBW7 isofor... 1069 0.0
Alignment gi|XP_883656.1| PREDICTED: similar to F-box protein FBW7 isofor... 244 2e-64
Alignment gi|XP_612428.2| PREDICTED: similar to F-box and WD-40 domain pr... 242 1e-63
Alignment gi|XP_877080.1| PREDICTED: similar to F-box and WD-40 domain pr... 242 1e-63
Alignment gi|XP_613703.2| PREDICTED: similar to F-box/WD-repeat protein 1... 236 5e-62
Alignment gi|XP_608583.2| PREDICTED: similar to CG7568-PA [Bos taurus] 181 3e-45
>ref|XP_883815.1| PREDICTED: similar to F-box protein FBW7 isoform 1 isoform 6 [Bos
taurus]
Length = 706
Score = 1211 bits (3132), Expect = 0.0
Identities = 606/706 (85%), Positives = 607/706 (85%), Gaps = 1/706 (0%)
Frame = +2
Query: 407 MNQELLSVGSKRRRTGGSLRGNPSSSQADXXXXXXXXXXXXXX-XXXXXXHTARNGEVVG 583
MNQELLSVGSKRRRTGGSLRGNPSSSQAD H ARNGEVVG
Sbjct: 1 MNQELLSVGSKRRRTGGSLRGNPSSSQADEEQMNRVLEEEQQQPRHQEEEHAARNGEVVG 60
Query: 584 AEPRPGAQNASQQGQLEENNNRFISVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 763
AEPRPG QN QQGQLEENNNRFISV
Sbjct: 61 AEPRPGDQNDPQQGQLEENNNRFISVDEDSSGNQEEQEEDEEHAGEQDEEDEEEEEMDQE 120
Query: 764 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLPIHQLSSPFYTKTTKMKRKLDHGSEVRSF 943
DLPIHQ SSPFYTKTTKMKRKLDHGSEVRSF
Sbjct: 121 SDDFDQSDDSSREDEHTHRNSVTNSNSIVDLPIHQRSSPFYTKTTKMKRKLDHGSEVRSF 180
Query: 944 SLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAANXXXXXXXXITSVQPPTGLQEWLKMF 1123
SLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAAN ITSVQPPTGLQEWLKMF
Sbjct: 181 SLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAANGQGQQRRRITSVQPPTGLQEWLKMF 240
Query: 1124 QSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPKELALYVLSFLEPKDL 1303
QSWSGPEKLLALDELIDSCEPTQVKHMMQVI PQFQRDFISLLPKELALYVLSFLEPKDL
Sbjct: 241 QSWSGPEKLLALDELIDSCEPTQVKHMMQVIEPQFQRDFISLLPKELALYVLSFLEPKDL 300
Query: 1304 LQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQHRI 1483
LQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQHRI
Sbjct: 301 LQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQHRI 360
Query: 1484 DTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT 1663
DTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT
Sbjct: 361 DTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT 420
Query: 1664 GGVWSSQMRDNIIISGSTDRTLRVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDA 1843
GGVWSSQMRDNIIISGSTDRTL+VWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDA
Sbjct: 421 GGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDA 480
Query: 1844 TLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT 2023
TLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT
Sbjct: 481 TLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT 540
Query: 2024 NRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADS 2203
NRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADS
Sbjct: 541 NRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADS 600
Query: 2204 TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLV 2383
TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLV
Sbjct: 601 TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLV 660
Query: 2384 TLESGGSGGVVWRIRASNTKLVCAVGSRNGTEEAKLLVLDFDVDMK 2521
TLESGGSGGVVWRIRASNTKLVCAVGSRNGTEE KLLVLDFDVDMK
Sbjct: 661 TLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVDMK 706
>ref|XP_613742.2| PREDICTED: similar to F-box protein FBW7 isoform 1 isoform 1 [Bos
taurus]
Length = 706
Score = 1211 bits (3132), Expect = 0.0
Identities = 606/706 (85%), Positives = 607/706 (85%), Gaps = 1/706 (0%)
Frame = +2
Query: 407 MNQELLSVGSKRRRTGGSLRGNPSSSQADXXXXXXXXXXXXXX-XXXXXXHTARNGEVVG 583
MNQELLSVGSKRRRTGGSLRGNPSSSQAD H ARNGEVVG
Sbjct: 1 MNQELLSVGSKRRRTGGSLRGNPSSSQADEEQMNRVLEEEQQQPRHQEEEHAARNGEVVG 60
Query: 584 AEPRPGAQNASQQGQLEENNNRFISVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 763
AEPRPG QN QQGQLEENNNRFISV
Sbjct: 61 AEPRPGDQNDPQQGQLEENNNRFISVDEDSSGNQEEQEEDEEHAGEQDEEDEEEEEMDQE 120
Query: 764 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLPIHQLSSPFYTKTTKMKRKLDHGSEVRSF 943
DLPIHQ SSPFYTKTTKMKRKLDHGSEVRSF
Sbjct: 121 SDDFDQSDDSSREDEHTHRNSVTNSNSIVDLPIHQRSSPFYTKTTKMKRKLDHGSEVRSF 180
Query: 944 SLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAANXXXXXXXXITSVQPPTGLQEWLKMF 1123
SLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAAN ITSVQPPTGLQEWLKMF
Sbjct: 181 SLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAANGQGQQRRRITSVQPPTGLQEWLKMF 240
Query: 1124 QSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPKELALYVLSFLEPKDL 1303
QSWSGPEKLLALDELIDSCEPTQVKHMMQVI PQFQRDFISLLPKELALYVLSFLEPKDL
Sbjct: 241 QSWSGPEKLLALDELIDSCEPTQVKHMMQVIEPQFQRDFISLLPKELALYVLSFLEPKDL 300
Query: 1304 LQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQHRI 1483
LQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQHRI
Sbjct: 301 LQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQHRI 360
Query: 1484 DTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT 1663
DTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT
Sbjct: 361 DTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT 420
Query: 1664 GGVWSSQMRDNIIISGSTDRTLRVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDA 1843
GGVWSSQMRDNIIISGSTDRTL+VWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDA
Sbjct: 421 GGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDA 480
Query: 1844 TLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT 2023
TLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT
Sbjct: 481 TLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT 540
Query: 2024 NRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADS 2203
NRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADS
Sbjct: 541 NRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADS 600
Query: 2204 TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLV 2383
TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLV
Sbjct: 601 TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLV 660
Query: 2384 TLESGGSGGVVWRIRASNTKLVCAVGSRNGTEEAKLLVLDFDVDMK 2521
TLESGGSGGVVWRIRASNTKLVCAVGSRNGTEE KLLVLDFDVDMK
Sbjct: 661 TLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVDMK 706
>ref|XP_883690.1| PREDICTED: similar to F-box protein FBW7 isoform 2 isoform 3 [Bos
taurus]
Length = 627
Score = 1093 bits (2828), Expect = 0.0
Identities = 530/541 (97%), Positives = 531/541 (98%)
Frame = +2
Query: 899 KMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAANXXXXXXXXIT 1078
KMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAAN IT
Sbjct: 87 KMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAANGQGQQRRRIT 146
Query: 1079 SVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPK 1258
SVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVI PQFQRDFISLLPK
Sbjct: 147 SVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIEPQFQRDFISLLPK 206
Query: 1259 ELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGF 1438
ELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGF
Sbjct: 207 ELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGF 266
Query: 1439 IHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVW 1618
IHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVW
Sbjct: 267 IHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVW 326
Query: 1619 SAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLRVWNAETGECIHTLYGHTSTVRC 1798
SAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTL+VWNAETGECIHTLYGHTSTVRC
Sbjct: 327 SAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRC 386
Query: 1799 MHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVW 1978
MHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVW
Sbjct: 387 MHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVW 446
Query: 1979 DPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG 2158
DPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG
Sbjct: 447 DPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG 506
Query: 2159 MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV 2338
MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV
Sbjct: 507 MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV 566
Query: 2339 KLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEEAKLLVLDFDVDM 2518
KLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEE KLLVLDFDVDM
Sbjct: 567 KLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVDM 626
Query: 2519 K 2521
K
Sbjct: 627 K 627
>ref|XP_883785.1| PREDICTED: similar to F-box protein FBW7 isoform 3 isoform 5 [Bos
taurus]
Length = 589
Score = 1092 bits (2825), Expect = 0.0
Identities = 529/541 (97%), Positives = 531/541 (98%)
Frame = +2
Query: 899 KMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAANXXXXXXXXIT 1078
+MKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAAN IT
Sbjct: 49 RMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAANGQGQQRRRIT 108
Query: 1079 SVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPK 1258
SVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVI PQFQRDFISLLPK
Sbjct: 109 SVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIEPQFQRDFISLLPK 168
Query: 1259 ELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGF 1438
ELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGF
Sbjct: 169 ELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGF 228
Query: 1439 IHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVW 1618
IHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVW
Sbjct: 229 IHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVW 288
Query: 1619 SAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLRVWNAETGECIHTLYGHTSTVRC 1798
SAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTL+VWNAETGECIHTLYGHTSTVRC
Sbjct: 289 SAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRC 348
Query: 1799 MHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVW 1978
MHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVW
Sbjct: 349 MHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVW 408
Query: 1979 DPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG 2158
DPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG
Sbjct: 409 DPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG 468
Query: 2159 MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV 2338
MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV
Sbjct: 469 MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV 528
Query: 2339 KLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEEAKLLVLDFDVDM 2518
KLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEE KLLVLDFDVDM
Sbjct: 529 KLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVDM 588
Query: 2519 K 2521
K
Sbjct: 589 K 589
>ref|XP_883749.1| PREDICTED: similar to F-box protein FBW7 isoform 2 isoform 4 [Bos
taurus]
Length = 629
Score = 1069 bits (2765), Expect = 0.0
Identities = 523/543 (96%), Positives = 525/543 (96%), Gaps = 2/543 (0%)
Frame = +2
Query: 899 KMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAANXXXXXXXXIT 1078
KMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAAN IT
Sbjct: 87 KMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAANGQGQQRRRIT 146
Query: 1079 SVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPK 1258
SVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVI PQFQRDFISLLPK
Sbjct: 147 SVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIEPQFQRDFISLLPK 206
Query: 1259 ELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIK--RRKVIKP 1432
ELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEG + K RRKVIKP
Sbjct: 207 ELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGKVQNHREKMFRRKVIKP 266
Query: 1433 GFIHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLK 1612
GFIHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLK
Sbjct: 267 GFIHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLK 326
Query: 1613 VWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLRVWNAETGECIHTLYGHTSTV 1792
VWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTL+VWNAETGECIHTLYGHTSTV
Sbjct: 327 VWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTV 386
Query: 1793 RCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVK 1972
RCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVK
Sbjct: 387 RCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVK 446
Query: 1973 VWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT 2152
VWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT
Sbjct: 447 VWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT 506
Query: 2153 SGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDG 2332
SGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDG
Sbjct: 507 SGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDG 566
Query: 2333 TVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEEAKLLVLDFDV 2512
TVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEE KLLVLDFDV
Sbjct: 567 TVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 626
Query: 2513 DMK 2521
DMK
Sbjct: 627 DMK 629
>ref|XP_883656.1| PREDICTED: similar to F-box protein FBW7 isoform 2 isoform 2 [Bos
taurus]
Length = 121
Score = 244 bits (623), Expect = 2e-64
Identities = 120/121 (99%), Positives = 120/121 (99%)
Frame = +2
Query: 2159 MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV 2338
MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV
Sbjct: 1 MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV 60
Query: 2339 KLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEEAKLLVLDFDVDM 2518
KLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEE KLLVLDFDVDM
Sbjct: 61 KLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVDM 120
Query: 2519 K 2521
K
Sbjct: 121 K 121
Score = 71.6 bits (174), Expect = 3e-12
Identities = 27/74 (36%), Positives = 53/74 (71%), Gaps = 3/74 (4%)
Frame = +2
Query: 1682 QMRDNIIISGSTDRTLRVWNAETGECIHTLYG---HTSTVRCMHLHEKRVVSGSRDATLR 1852
+++DNI++SG+ D T+++W+ +TG+C+ TL G H S V C+ ++ V++ S D T++
Sbjct: 2 ELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVK 61
Query: 1853 VWDIETGQCLHVLM 1894
+WD++TG+ + L+
Sbjct: 62 LWDLKTGEFIRNLV 75
Score = 63.9 bits (154), Expect = 6e-10
Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Frame = +2
Query: 1799 MHLHEKRVVSGSRDATLRVWDIETGQCLHVLMG---HVAAVRCVQYDGRRVVSGAYDFMV 1969
M L + +VSG+ D+T+++WDI+TGQCL L G H +AV C+Q++ V++ + D V
Sbjct: 1 MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV 60
Query: 1970 KVWDPETETCLHTL 2011
K+WD +T + L
Sbjct: 61 KLWDLKTGEFIRNL 74
Score = 60.8 bits (146), Expect = 5e-09
Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Frame = +2
Query: 1574 NRIVSGSDDNTLKVWSAVTGKCLRTLVG---HTGGVWSSQMRDNIIISGSTDRTLRVWNA 1744
N +VSG+ D+T+K+W TG+CL+TL G H V Q N +I+ S D T+++W+
Sbjct: 6 NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDL 65
Query: 1745 ETGECIHTL 1771
+TGE I L
Sbjct: 66 KTGEFIRNL 74
Score = 58.5 bits (140), Expect = 3e-08
Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Frame = +2
Query: 1940 VVSGAYDFMVKVWDPETETCLHTLQG---HTNRVYSLQFDGIHVVSGSLDTSIRVWDVET 2110
+VSG D VK+WD +T CL TLQG H + V LQF+ V++ S D ++++WD++T
Sbjct: 8 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKT 67
Query: 2111 GNCIHTLTGHQSLTSG 2158
G I L +S SG
Sbjct: 68 GEFIRNLVTLESGGSG 83
>ref|XP_612428.2| PREDICTED: similar to F-box and WD-40 domain protein 11 isoform 1
[Bos taurus]
Length = 563
Score = 242 bits (617), Expect = 1e-63
Identities = 140/445 (31%), Positives = 229/445 (51%), Gaps = 32/445 (7%)
Frame = +2
Query: 1112 LKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPKE----LALYVL 1279
+K F WS +++ ++ LI Q H+ + P QRDFI+ LP++ +A +L
Sbjct: 98 IKYFDQWSESDQVEFVEHLISRMCHYQHGHINSYLKPMLQRDFITALPEQGLDHIAENIL 157
Query: 1280 SFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLH-------------IKRRK 1420
S+L+ + L A C+ W+ + + +LW++ + +PL K R
Sbjct: 158 SYLDARSLCAAELVCKEWQRVISEGMLWKKLIERMVRTDPLWKGLSERRGWDQYLFKNRP 217
Query: 1421 VIKP--GFIHSPWKSAYIRQHRIDTNWRRGELKSPKV-LKGHDDHVITCLQFCGNRIVSG 1591
P F S + I++NWR G ++ + + + CLQ+ +I+SG
Sbjct: 218 TDGPPNSFYRSLYPKIIQDIETIESNWRCGRHNLQRIQCRSENSKGVYCLQYDDEKIISG 277
Query: 1592 SDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLRVWNAETGECIHTL 1771
DN++K+W + +CL+ L GHTG V Q + +I++GS+D T+RVW+ TGE ++TL
Sbjct: 278 LRDNSIKIWDKTSLECLKVLTGHTGSVLCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTL 337
Query: 1772 YGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCL---HVLMGHVAAVRCVQYDGRRV 1942
H V + +V+ S+D ++ VWD+ + + VL+GH AAV V +D + +
Sbjct: 338 IHHNEAVLHLRFSNGLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYI 397
Query: 1943 VSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCI 2122
VS + D +KVW T + TL GH + LQ+ VVSGS D +IR+WD+E G C+
Sbjct: 398 VSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACL 457
Query: 2123 HTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTG---------QCLQTLQGPNKHQS 2275
L GH+ L + + +VSG D +K+WD++ CL+TL +H
Sbjct: 458 RVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLV---EHSG 514
Query: 2276 AVTCLQFNKNFVITSSDDGTVKLWD 2350
V LQF++ +I+SS D T+ +WD
Sbjct: 515 RVFRLQFDEFQIISSSHDDTILIWD 539
Score = 68.2 bits (165), Expect = 3e-11
Identities = 28/75 (37%), Positives = 49/75 (65%)
Frame = +2
Query: 2159 MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV 2338
++ D ++SG D+++KIWD + +CL+ L G H +V CLQ+++ ++T S D TV
Sbjct: 267 LQYDDEKIISGLRDNSIKIWDKTSLECLKVLTG---HTGSVLCLQYDERVIVTGSSDSTV 323
Query: 2339 KLWDLKTGEFIRNLV 2383
++WD+ TGE + L+
Sbjct: 324 RVWDVNTGEVLNTLI 338
>ref|XP_877080.1| PREDICTED: similar to F-box and WD-40 domain protein 11 isoform 2
[Bos taurus]
Length = 522
Score = 242 bits (617), Expect = 1e-63
Identities = 140/445 (31%), Positives = 229/445 (51%), Gaps = 32/445 (7%)
Frame = +2
Query: 1112 LKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPKE----LALYVL 1279
+K F WS +++ ++ LI Q H+ + P QRDFI+ LP++ +A +L
Sbjct: 57 IKYFDQWSESDQVEFVEHLISRMCHYQHGHINSYLKPMLQRDFITALPEQGLDHIAENIL 116
Query: 1280 SFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLH-------------IKRRK 1420
S+L+ + L A C+ W+ + + +LW++ + +PL K R
Sbjct: 117 SYLDARSLCAAELVCKEWQRVISEGMLWKKLIERMVRTDPLWKGLSERRGWDQYLFKNRP 176
Query: 1421 VIKP--GFIHSPWKSAYIRQHRIDTNWRRGELKSPKV-LKGHDDHVITCLQFCGNRIVSG 1591
P F S + I++NWR G ++ + + + CLQ+ +I+SG
Sbjct: 177 TDGPPNSFYRSLYPKIIQDIETIESNWRCGRHNLQRIQCRSENSKGVYCLQYDDEKIISG 236
Query: 1592 SDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLRVWNAETGECIHTL 1771
DN++K+W + +CL+ L GHTG V Q + +I++GS+D T+RVW+ TGE ++TL
Sbjct: 237 LRDNSIKIWDKTSLECLKVLTGHTGSVLCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTL 296
Query: 1772 YGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCL---HVLMGHVAAVRCVQYDGRRV 1942
H V + +V+ S+D ++ VWD+ + + VL+GH AAV V +D + +
Sbjct: 297 IHHNEAVLHLRFSNGLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYI 356
Query: 1943 VSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCI 2122
VS + D +KVW T + TL GH + LQ+ VVSGS D +IR+WD+E G C+
Sbjct: 357 VSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACL 416
Query: 2123 HTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTG---------QCLQTLQGPNKHQS 2275
L GH+ L + + +VSG D +K+WD++ CL+TL +H
Sbjct: 417 RVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLV---EHSG 473
Query: 2276 AVTCLQFNKNFVITSSDDGTVKLWD 2350
V LQF++ +I+SS D T+ +WD
Sbjct: 474 RVFRLQFDEFQIISSSHDDTILIWD 498
Score = 68.2 bits (165), Expect = 3e-11
Identities = 28/75 (37%), Positives = 49/75 (65%)
Frame = +2
Query: 2159 MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV 2338
++ D ++SG D+++KIWD + +CL+ L G H +V CLQ+++ ++T S D TV
Sbjct: 226 LQYDDEKIISGLRDNSIKIWDKTSLECLKVLTG---HTGSVLCLQYDERVIVTGSSDSTV 282
Query: 2339 KLWDLKTGEFIRNLV 2383
++WD+ TGE + L+
Sbjct: 283 RVWDVNTGEVLNTLI 297
>ref|XP_613703.2| PREDICTED: similar to F-box/WD-repeat protein 1A (F-box and
WD-repeats protein beta-TrCP) (E3RSIkappaB)
(pIkappaBalpha-E3 receptor subunit) isoform 2 [Bos
taurus]
Length = 579
Score = 236 bits (603), Expect = 5e-62
Identities = 145/447 (32%), Positives = 230/447 (51%), Gaps = 34/447 (7%)
Frame = +2
Query: 1112 LKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPKE----LALYVL 1279
+K F+ WS +++ ++ LI Q H+ + P QRDFI+ LP +A +L
Sbjct: 112 VKYFEQWSESDQVEFVEHLISQMCHYQHGHINSYLKPMLQRDFITALPARGLDHIAENIL 171
Query: 1280 SFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLH---IKRRK------VIKP 1432
S+L+ + L A C+ W + D +LW++ + + L +RR KP
Sbjct: 172 SYLDARSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKP 231
Query: 1433 GFIHSPWKSAYIRQH--------RIDTNWRRGELKSPKV-LKGHDDHVITCLQFCGNRIV 1585
++P S Y + I++NWR G ++ + + CLQ+ +IV
Sbjct: 232 PDGNAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIV 291
Query: 1586 SGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLRVWNAETGECIH 1765
SG DNT+K+W T +C R L GHTG V Q + +II+GS+D T+RVW+ TGE ++
Sbjct: 292 SGLRDNTIKIWDKSTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLN 351
Query: 1766 TLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCL---HVLMGHVAAVRCVQYDGR 1936
TL H V + + +V+ S+D ++ VWD+ + + VL+GH AAV V +D +
Sbjct: 352 TLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK 411
Query: 1937 RVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGN 2116
+VS + D +KVW+ T + TL GH + LQ+ VVSGS D +IR+WD+E G
Sbjct: 412 YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGA 471
Query: 2117 CIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTG---------QCLQTLQGPNKH 2269
C+ L GH+ L + + +VSG D +K+WD+ CL+TL +H
Sbjct: 472 CLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV---EH 528
Query: 2270 QSAVTCLQFNKNFVITSSDDGTVKLWD 2350
V LQF++ +++SS D T+ +WD
Sbjct: 529 SGRVFRLQFDEFQIVSSSHDDTILIWD 555
Score = 154 bits (388), Expect = 4e-37
Identities = 86/260 (33%), Positives = 141/260 (54%), Gaps = 3/260 (1%)
Frame = +2
Query: 1760 IHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRR 1939
IH + V C+ ++++VSG RD T+++WD T +C +L GH +V C+QYD R
Sbjct: 270 IHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKSTLECKRILTGHTGSVLCLQYDERV 329
Query: 1940 VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNC 2119
+++G+ D V+VWD T L+TL H V L+F+ +V+ S D SI VWD+ +
Sbjct: 330 IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD 389
Query: 2120 I---HTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCL 2290
I L GH++ + ++ D +VS + D T+K+W+ T + ++TL G H+ + CL
Sbjct: 390 ITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNG---HKRGIACL 446
Query: 2291 QFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRN 2470
Q+ V++ S D T++LWD++ G +R L G +V IR N ++V +
Sbjct: 447 QYRDRLVVSGSSDNTIRLWDIECGACLRVL-----EGHEELVRCIRFDNKRIV------S 495
Query: 2471 GTEEAKLLVLDFDVDMK*RA 2530
G + K+ V D + RA
Sbjct: 496 GAYDGKIKVWDLVAALDPRA 515
>ref|XP_608583.2| PREDICTED: similar to CG7568-PA [Bos taurus]
Length = 441
Score = 181 bits (459), Expect = 3e-45
Identities = 98/301 (32%), Positives = 173/301 (57%), Gaps = 14/301 (4%)
Frame = +2
Query: 1520 KVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD- 1693
KVL+ H + L G+ ++GS D T K+W +G+ L TL GH V++ +
Sbjct: 112 KVLRAHILPLTNVALNKSGSCFITGSYDRTCKLWDTASGEELHTLEGHRNVVYAIAFNNP 171
Query: 1694 --NIIISGSTDRTLRVWNAETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWD 1861
+ I +GS D+T ++W+ ETG+C HT GHT+ + C+ + + V +GS D T ++WD
Sbjct: 172 YGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWD 231
Query: 1862 IETGQCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY 2035
I++G+ + L GH A + + ++ G R+++G++D V VW+ +T ++TL GH +
Sbjct: 232 IQSGEEVFTLTGHSAEIISLSFNTSGNRIITGSFDHTVTVWEADTGRKVYTLIGHCAEIS 291
Query: 2036 SLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGH--QSLTSGMELKDNILVSGNADS 2203
S F D +++GS+D + ++WD G C+ TLTGH + L S + ++ + +AD
Sbjct: 292 SAVFNWDCSLILTGSMDKTCKLWDAVNGKCVATLTGHDDEILDSCFDYTGKLIATASADG 351
Query: 2204 TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKLWDLKTGEFIRN 2377
T +I+ T +C+ L+G H+ ++ + FN N ++T S D T ++WD +TG+ ++
Sbjct: 352 TARIFSAATRECVTKLEG---HEGEISKISFNPQGNRLLTGSSDKTARIWDAQTGQCLQV 408
Query: 2378 L 2380
L
Sbjct: 409 L 409
Score = 169 bits (428), Expect = 1e-41
Identities = 96/300 (32%), Positives = 162/300 (54%), Gaps = 15/300 (5%)
Frame = +2
Query: 1493 WRRGELKSPKVLKGHDDHVITCLQF---CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT 1663
W + L+GH + V+ + F G++I +GS D T K+WS TGKC T GHT
Sbjct: 145 WDTASGEELHTLEGHRN-VVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHT 203
Query: 1664 GGV--WSSQMRDNIIISGSTDRTLRVWNAETGECIHTLYGHTSTVRCMHLHEK--RVVSG 1831
+ S + ++ +GS D T ++W+ ++GE + TL GH++ + + + R+++G
Sbjct: 204 AEIVCLSFNPQSTLVATGSMDTTAKLWDIQSGEEVFTLTGHSAEIISLSFNTSGNRIITG 263
Query: 1832 SRDATLRVWDIETGQCLHVLMGHVAAVRCV--QYDGRRVVSGAYDFMVKVWDPETETCLH 2005
S D T+ VW+ +TG+ ++ L+GH A + +D +++G+ D K+WD C+
Sbjct: 264 SFDHTVTVWEADTGRKVYTLIGHCAEISSAVFNWDCSLILTGSMDKTCKLWDAVNGKCVA 323
Query: 2006 TLQGHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KD 2173
TL GH + + FD G + + S D + R++ T C+ L GH+ S + +
Sbjct: 324 TLTGHDDEILDSCFDYTGKLIATASADGTARIFSAATRECVTKLEGHEGEISKISFNPQG 383
Query: 2174 NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLW 2347
N L++G++D T +IWD +TGQCLQ L+G H + FN + +IT S D T ++W
Sbjct: 384 NRLLTGSSDKTARIWDAQTGQCLQVLEG---HTDEIFSCAFNYKGDIIITGSKDNTCRIW 440
Score = 134 bits (336), Expect = 5e-31
Identities = 71/227 (31%), Positives = 128/227 (56%), Gaps = 12/227 (5%)
Frame = +2
Query: 1454 KSAYIRQHRIDTNWRRGELKSPK---VLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWS 1621
+S + +DT + +++S + L GH +I+ GNRI++GS D+T+ VW
Sbjct: 214 QSTLVATGSMDTTAKLWDIQSGEEVFTLTGHSAEIISLSFNTSGNRIITGSFDHTVTVWE 273
Query: 1622 AVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLRVWNAETGECIHTLYGHTSTV- 1792
A TG+ + TL+GH + S+ ++I++GS D+T ++W+A G+C+ TL GH +
Sbjct: 274 ADTGRKVYTLIGHCAEISSAVFNWDCSLILTGSMDKTCKLWDAVNGKCVATLTGHDDEIL 333
Query: 1793 -RCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD--GRRVVSGAYDF 1963
C K + + S D T R++ T +C+ L GH + + ++ G R+++G+ D
Sbjct: 334 DSCFDYTGKLIATASADGTARIFSAATRECVTKLEGHEGEISKISFNPQGNRLLTGSSDK 393
Query: 1964 MVKVWDPETETCLHTLQGHTNRVYSLQFD--GIHVVSGSLDTSIRVW 2098
++WD +T CL L+GHT+ ++S F+ G +++GS D + R+W
Sbjct: 394 TARIWDAQTGQCLQVLEGHTDEIFSCAFNYKGDIIITGSKDNTCRIW 440
Score = 110 bits (276), Expect = 4e-24
Identities = 61/175 (34%), Positives = 98/175 (56%), Gaps = 9/175 (5%)
Frame = +2
Query: 1886 VLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--- 2050
VL H+ + V + G ++G+YD K+WD + LHTL+GH N VY++ F+
Sbjct: 113 VLRAHILPLTNVALNKSGSCFITGSYDRTCKLWDTASGEELHTLEGHRNVVYAIAFNNPY 172
Query: 2051 GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--LTSGMELKDNILVSGNADSTVKIWDI 2224
G + +GS D + ++W VETG C HT GH + + + ++ +G+ D+T K+WDI
Sbjct: 173 GDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDI 232
Query: 2225 KTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKLWDLKTGEFIRNLV 2383
++G+ + TL G H + + L FN N +IT S D TV +W+ TG + L+
Sbjct: 233 QSGEEVFTLTG---HSAEIISLSFNTSGNRIITGSFDHTVTVWEADTGRKVYTLI 284
Database: RefSeqBP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 16,112,626
Number of sequences in database: 33,508
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,751,683
Number of Sequences: 33508
Number of extensions: 2246956
Number of successful extensions: 11813
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 6450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9248
length of database: 16,112,626
effective HSP length: 110
effective length of database: 12,426,746
effective search space used: 9469180452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PBL01_0074_B12
(2620 letters)
Database: RefSeqCP
33,732 sequences; 19,266,565 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_853624.1| PREDICTED: similar to F-box protein FBW7 isofor... 1093 0.0
Alignment gi|XP_532689.2| PREDICTED: similar to F-box protein FBW7 isofor... 1092 0.0
Alignment gi|XP_867720.1| PREDICTED: similar to F-box protein FBW7 isofor... 1063 0.0
Alignment gi|XP_867701.1| PREDICTED: similar to F-box protein FBW7 isofor... 573 e-163
Alignment gi|XP_867711.1| PREDICTED: similar to F-box protein FBW7 isofor... 326 6e-89
Alignment gi|XP_866627.1| PREDICTED: similar to F-box/WD-repeat protein 1... 242 2e-63
Alignment gi|XP_852961.1| PREDICTED: similar to F-box and WD-40 domain pr... 242 2e-63
Alignment gi|XP_866601.1| PREDICTED: similar to F-box and WD-40 domain pr... 242 2e-63
Alignment gi|XP_536431.2| PREDICTED: similar to F-box and WD-40 domain pr... 242 2e-63
Alignment gi|XP_866580.1| PREDICTED: similar to F-box and WD-40 domain pr... 242 2e-63
>ref|XP_853624.1| PREDICTED: similar to F-box protein FBW7 isoform 2 isoform 2 [Canis
familiaris]
Length = 627
Score = 1093 bits (2828), Expect = 0.0
Identities = 530/541 (97%), Positives = 531/541 (98%)
Frame = +2
Query: 899 KMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAANXXXXXXXXIT 1078
KMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAAN IT
Sbjct: 87 KMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAANGQGQQRRRIT 146
Query: 1079 SVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPK 1258
SVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVI PQFQRDFISLLPK
Sbjct: 147 SVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIEPQFQRDFISLLPK 206
Query: 1259 ELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGF 1438
ELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGF
Sbjct: 207 ELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGF 266
Query: 1439 IHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVW 1618
IHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVW
Sbjct: 267 IHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVW 326
Query: 1619 SAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLRVWNAETGECIHTLYGHTSTVRC 1798
SAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTL+VWNAETGECIHTLYGHTSTVRC
Sbjct: 327 SAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRC 386
Query: 1799 MHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVW 1978
MHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVW
Sbjct: 387 MHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVW 446
Query: 1979 DPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG 2158
DPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG
Sbjct: 447 DPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG 506
Query: 2159 MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV 2338
MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV
Sbjct: 507 MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV 566
Query: 2339 KLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEEAKLLVLDFDVDM 2518
KLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEE KLLVLDFDVDM
Sbjct: 567 KLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVDM 626
Query: 2519 K 2521
K
Sbjct: 627 K 627
>ref|XP_532689.2| PREDICTED: similar to F-box protein FBW7 isoform 3 isoform 1 [Canis
familiaris]
Length = 589
Score = 1092 bits (2825), Expect = 0.0
Identities = 529/541 (97%), Positives = 531/541 (98%)
Frame = +2
Query: 899 KMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAANXXXXXXXXIT 1078
+MKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAAN IT
Sbjct: 49 RMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAANGQGQQRRRIT 108
Query: 1079 SVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPK 1258
SVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVI PQFQRDFISLLPK
Sbjct: 109 SVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIEPQFQRDFISLLPK 168
Query: 1259 ELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGF 1438
ELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGF
Sbjct: 169 ELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGF 228
Query: 1439 IHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVW 1618
IHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVW
Sbjct: 229 IHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVW 288
Query: 1619 SAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLRVWNAETGECIHTLYGHTSTVRC 1798
SAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTL+VWNAETGECIHTLYGHTSTVRC
Sbjct: 289 SAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRC 348
Query: 1799 MHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVW 1978
MHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVW
Sbjct: 349 MHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVW 408
Query: 1979 DPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG 2158
DPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG
Sbjct: 409 DPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG 468
Query: 2159 MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV 2338
MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV
Sbjct: 469 MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV 528
Query: 2339 KLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEEAKLLVLDFDVDM 2518
KLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEE KLLVLDFDVDM
Sbjct: 529 KLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVDM 588
Query: 2519 K 2521
K
Sbjct: 589 K 589
>ref|XP_867720.1| PREDICTED: similar to F-box protein FBW7 isoform 2 isoform 5 [Canis
familiaris]
Length = 637
Score = 1063 bits (2750), Expect = 0.0
Identities = 523/551 (94%), Positives = 525/551 (95%), Gaps = 10/551 (1%)
Frame = +2
Query: 899 KMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAANXXXXXXXXIT 1078
KMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAAN IT
Sbjct: 87 KMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAANGQGQQRRRIT 146
Query: 1079 SVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPK 1258
SVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVI PQFQRDFISLLPK
Sbjct: 147 SVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIEPQFQRDFISLLPK 206
Query: 1259 ELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEG--IDEPLHIK------- 1411
ELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEE I+ I
Sbjct: 207 ELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEETIIEHETDILYVILPFK 266
Query: 1412 -RRKVIKPGFIHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVS 1588
RRKVIKPGFIHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVS
Sbjct: 267 GRRKVIKPGFIHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVS 326
Query: 1589 GSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLRVWNAETGECIHT 1768
GSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTL+VWNAETGECIHT
Sbjct: 327 GSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHT 386
Query: 1769 LYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVS 1948
LYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVS
Sbjct: 387 LYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVS 446
Query: 1949 GAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHT 2128
GAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHT
Sbjct: 447 GAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHT 506
Query: 2129 LTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNF 2308
LTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNF
Sbjct: 507 LTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNF 566
Query: 2309 VITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEEAK 2488
VITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEE K
Sbjct: 567 VITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETK 626
Query: 2489 LLVLDFDVDMK 2521
LLVLDFDVDMK
Sbjct: 627 LLVLDFDVDMK 637
>ref|XP_867701.1| PREDICTED: similar to F-box protein FBW7 isoform 2 isoform 3 [Canis
familiaris]
Length = 279
Score = 573 bits (1476), Expect = e-163
Identities = 277/279 (99%), Positives = 278/279 (99%)
Frame = +2
Query: 1685 MRDNIIISGSTDRTLRVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDI 1864
MRDNIIISGSTDRTL+VWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDI
Sbjct: 1 MRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDI 60
Query: 1865 ETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ 2044
ETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ
Sbjct: 61 ETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ 120
Query: 2045 FDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDI 2224
FDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDI
Sbjct: 121 FDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDI 180
Query: 2225 KTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGS 2404
KTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGS
Sbjct: 181 KTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGS 240
Query: 2405 GGVVWRIRASNTKLVCAVGSRNGTEEAKLLVLDFDVDMK 2521
GGVVWRIRASNTKLVCAVGSRNGTEE KLLVLDFDVDMK
Sbjct: 241 GGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVDMK 279
Score = 169 bits (429), Expect = 1e-41
Identities = 92/238 (38%), Positives = 127/238 (53%), Gaps = 43/238 (18%)
Frame = +2
Query: 1574 NRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLRVWNAETG 1753
N I+SGS D TLKVW+A TG+C+ TL GHT V + + ++SGS D TLRVW+ ETG
Sbjct: 4 NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETG 63
Query: 1754 ECIHTLYGHTSTVRCMHLHEKRVVSG---------------------------------- 1831
+C+H L GH + VRC+ +RVVSG
Sbjct: 64 QCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDG 123
Query: 1832 ------SRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE 1993
S D ++RVWD+ETG C+H L GH + ++ +VSG D VK+WD +T
Sbjct: 124 IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTG 183
Query: 1994 TCLHTLQG---HTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG 2158
CL TLQG H + V LQF+ V++ S D ++++WD++TG I L +S SG
Sbjct: 184 QCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSG 241
>ref|XP_867711.1| PREDICTED: similar to F-box protein FBW7 isoform 2 isoform 4 [Canis
familiaris]
Length = 165
Score = 326 bits (836), Expect = 6e-89
Identities = 160/161 (99%), Positives = 160/161 (99%)
Frame = +2
Query: 2039 LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIW 2218
LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIW
Sbjct: 5 LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIW 64
Query: 2219 DIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESG 2398
DIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESG
Sbjct: 65 DIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESG 124
Query: 2399 GSGGVVWRIRASNTKLVCAVGSRNGTEEAKLLVLDFDVDMK 2521
GSGGVVWRIRASNTKLVCAVGSRNGTEE KLLVLDFDVDMK
Sbjct: 125 GSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVDMK 165
Score = 107 bits (267), Expect = 6e-23
Identities = 45/119 (37%), Positives = 78/119 (65%), Gaps = 3/119 (2%)
Frame = +2
Query: 1547 VITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRT 1726
++ LQF G +VSGS D +++VW TG C+ TL GH +++DNI++SG+ D T
Sbjct: 1 MLCLLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADST 60
Query: 1727 LRVWNAETGECIHTLYG---HTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLM 1894
+++W+ +TG+C+ TL G H S V C+ ++ V++ S D T+++WD++TG+ + L+
Sbjct: 61 VKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLV 119
Score = 103 bits (258), Expect = 6e-22
Identities = 48/107 (44%), Positives = 71/107 (66%), Gaps = 3/107 (2%)
Frame = +2
Query: 1700 IISGSTDRTLRVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQC 1879
++SGS D ++RVW+ ETG CIHTL GH S M L + +VSG+ D+T+++WDI+TGQC
Sbjct: 12 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQC 71
Query: 1880 LHVLMG---HVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTL 2011
L L G H +AV C+Q++ V++ + D VK+WD +T + L
Sbjct: 72 LQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNL 118
Score = 97.4 bits (241), Expect = 6e-20
Identities = 50/116 (43%), Positives = 71/116 (61%), Gaps = 3/116 (2%)
Frame = +2
Query: 1820 VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETC 1999
VVSGS D ++RVWD+ETG C+H L GH + ++ +VSG D VK+WD +T C
Sbjct: 12 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQC 71
Query: 2000 LHTLQG---HTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG 2158
L TLQG H + V LQF+ V++ S D ++++WD++TG I L +S SG
Sbjct: 72 LQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSG 127
>ref|XP_866627.1| PREDICTED: similar to F-box/WD-repeat protein 11 (F-box/WD-repeat
protein 1B) (F-box and WD-repeats protein beta-TrCP2)
isoform 8 [Canis familiaris]
Length = 542
Score = 242 bits (617), Expect = 2e-63
Identities = 140/445 (31%), Positives = 229/445 (51%), Gaps = 32/445 (7%)
Frame = +2
Query: 1112 LKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPKE----LALYVL 1279
+K F WS +++ ++ LI Q H+ + P QRDFI+ LP++ +A +L
Sbjct: 77 IKYFDQWSESDQVEFVEHLISRMCHYQHGHINSYLKPMLQRDFITALPEQGLDHIAENIL 136
Query: 1280 SFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLH-------------IKRRK 1420
S+L+ + L A C+ W+ + + +LW++ + +PL K R
Sbjct: 137 SYLDARSLCAAELVCKEWQRVISEGMLWKKLIERMVRTDPLWKGLSERRGWDQYLFKNRP 196
Query: 1421 VIKP--GFIHSPWKSAYIRQHRIDTNWRRGELKSPKV-LKGHDDHVITCLQFCGNRIVSG 1591
P F S + I++NWR G ++ + + + CLQ+ +I+SG
Sbjct: 197 TDGPPNSFYRSLYPKIIQDIETIESNWRCGRHNLQRIQCRSENSKGVYCLQYDDEKIISG 256
Query: 1592 SDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLRVWNAETGECIHTL 1771
DN++K+W + +CL+ L GHTG V Q + +I++GS+D T+RVW+ TGE ++TL
Sbjct: 257 LRDNSIKIWDKTSLECLKVLTGHTGSVLCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTL 316
Query: 1772 YGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCL---HVLMGHVAAVRCVQYDGRRV 1942
H V + +V+ S+D ++ VWD+ + + VL+GH AAV V +D + +
Sbjct: 317 IHHNEAVLHLRFSNGLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYI 376
Query: 1943 VSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCI 2122
VS + D +KVW T + TL GH + LQ+ VVSGS D +IR+WD+E G C+
Sbjct: 377 VSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACL 436
Query: 2123 HTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTG---------QCLQTLQGPNKHQS 2275
L GH+ L + + +VSG D +K+WD++ CL+TL +H
Sbjct: 437 RVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLV---EHSG 493
Query: 2276 AVTCLQFNKNFVITSSDDGTVKLWD 2350
V LQF++ +I+SS D T+ +WD
Sbjct: 494 RVFRLQFDEFQIISSSHDDTILIWD 518
Score = 68.2 bits (165), Expect = 4e-11
Identities = 28/75 (37%), Positives = 49/75 (65%)
Frame = +2
Query: 2159 MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV 2338
++ D ++SG D+++KIWD + +CL+ L G H +V CLQ+++ ++T S D TV
Sbjct: 246 LQYDDEKIISGLRDNSIKIWDKTSLECLKVLTG---HTGSVLCLQYDERVIVTGSSDSTV 302
Query: 2339 KLWDLKTGEFIRNLV 2383
++WD+ TGE + L+
Sbjct: 303 RVWDVNTGEVLNTLI 317
>ref|XP_852961.1| PREDICTED: similar to F-box and WD-40 domain protein 11 isoform 2
[Canis familiaris]
Length = 563
Score = 242 bits (617), Expect = 2e-63
Identities = 140/445 (31%), Positives = 229/445 (51%), Gaps = 32/445 (7%)
Frame = +2
Query: 1112 LKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPKE----LALYVL 1279
+K F WS +++ ++ LI Q H+ + P QRDFI+ LP++ +A +L
Sbjct: 98 IKYFDQWSESDQVEFVEHLISRMCHYQHGHINSYLKPMLQRDFITALPEQGLDHIAENIL 157
Query: 1280 SFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLH-------------IKRRK 1420
S+L+ + L A C+ W+ + + +LW++ + +PL K R
Sbjct: 158 SYLDARSLCAAELVCKEWQRVISEGMLWKKLIERMVRTDPLWKGLSERRGWDQYLFKNRP 217
Query: 1421 VIKP--GFIHSPWKSAYIRQHRIDTNWRRGELKSPKV-LKGHDDHVITCLQFCGNRIVSG 1591
P F S + I++NWR G ++ + + + CLQ+ +I+SG
Sbjct: 218 TDGPPNSFYRSLYPKIIQDIETIESNWRCGRHNLQRIQCRSENSKGVYCLQYDDEKIISG 277
Query: 1592 SDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLRVWNAETGECIHTL 1771
DN++K+W + +CL+ L GHTG V Q + +I++GS+D T+RVW+ TGE ++TL
Sbjct: 278 LRDNSIKIWDKTSLECLKVLTGHTGSVLCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTL 337
Query: 1772 YGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCL---HVLMGHVAAVRCVQYDGRRV 1942
H V + +V+ S+D ++ VWD+ + + VL+GH AAV V +D + +
Sbjct: 338 IHHNEAVLHLRFSNGLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYI 397
Query: 1943 VSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCI 2122
VS + D +KVW T + TL GH + LQ+ VVSGS D +IR+WD+E G C+
Sbjct: 398 VSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACL 457
Query: 2123 HTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTG---------QCLQTLQGPNKHQS 2275
L GH+ L + + +VSG D +K+WD++ CL+TL +H
Sbjct: 458 RVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLV---EHSG 514
Query: 2276 AVTCLQFNKNFVITSSDDGTVKLWD 2350
V LQF++ +I+SS D T+ +WD
Sbjct: 515 RVFRLQFDEFQIISSSHDDTILIWD 539
Score = 68.2 bits (165), Expect = 4e-11
Identities = 28/75 (37%), Positives = 49/75 (65%)
Frame = +2
Query: 2159 MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV 2338
++ D ++SG D+++KIWD + +CL+ L G H +V CLQ+++ ++T S D TV
Sbjct: 267 LQYDDEKIISGLRDNSIKIWDKTSLECLKVLTG---HTGSVLCLQYDERVIVTGSSDSTV 323
Query: 2339 KLWDLKTGEFIRNLV 2383
++WD+ TGE + L+
Sbjct: 324 RVWDVNTGEVLNTLI 338
>ref|XP_866601.1| PREDICTED: similar to F-box and WD-40 domain protein 11 isoform 7
[Canis familiaris]
Length = 531
Score = 242 bits (617), Expect = 2e-63
Identities = 140/445 (31%), Positives = 229/445 (51%), Gaps = 32/445 (7%)
Frame = +2
Query: 1112 LKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPKE----LALYVL 1279
+K F WS +++ ++ LI Q H+ + P QRDFI+ LP++ +A +L
Sbjct: 66 IKYFDQWSESDQVEFVEHLISRMCHYQHGHINSYLKPMLQRDFITALPEQGLDHIAENIL 125
Query: 1280 SFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLH-------------IKRRK 1420
S+L+ + L A C+ W+ + + +LW++ + +PL K R
Sbjct: 126 SYLDARSLCAAELVCKEWQRVISEGMLWKKLIERMVRTDPLWKGLSERRGWDQYLFKNRP 185
Query: 1421 VIKP--GFIHSPWKSAYIRQHRIDTNWRRGELKSPKV-LKGHDDHVITCLQFCGNRIVSG 1591
P F S + I++NWR G ++ + + + CLQ+ +I+SG
Sbjct: 186 TDGPPNSFYRSLYPKIIQDIETIESNWRCGRHNLQRIQCRSENSKGVYCLQYDDEKIISG 245
Query: 1592 SDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLRVWNAETGECIHTL 1771
DN++K+W + +CL+ L GHTG V Q + +I++GS+D T+RVW+ TGE ++TL
Sbjct: 246 LRDNSIKIWDKTSLECLKVLTGHTGSVLCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTL 305
Query: 1772 YGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCL---HVLMGHVAAVRCVQYDGRRV 1942
H V + +V+ S+D ++ VWD+ + + VL+GH AAV V +D + +
Sbjct: 306 IHHNEAVLHLRFSNGLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYI 365
Query: 1943 VSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCI 2122
VS + D +KVW T + TL GH + LQ+ VVSGS D +IR+WD+E G C+
Sbjct: 366 VSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACL 425
Query: 2123 HTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTG---------QCLQTLQGPNKHQS 2275
L GH+ L + + +VSG D +K+WD++ CL+TL +H
Sbjct: 426 RVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLV---EHSG 482
Query: 2276 AVTCLQFNKNFVITSSDDGTVKLWD 2350
V LQF++ +I+SS D T+ +WD
Sbjct: 483 RVFRLQFDEFQIISSSHDDTILIWD 507
Score = 68.2 bits (165), Expect = 4e-11
Identities = 28/75 (37%), Positives = 49/75 (65%)
Frame = +2
Query: 2159 MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV 2338
++ D ++SG D+++KIWD + +CL+ L G H +V CLQ+++ ++T S D TV
Sbjct: 235 LQYDDEKIISGLRDNSIKIWDKTSLECLKVLTG---HTGSVLCLQYDERVIVTGSSDSTV 291
Query: 2339 KLWDLKTGEFIRNLV 2383
++WD+ TGE + L+
Sbjct: 292 RVWDVNTGEVLNTLI 306
>ref|XP_536431.2| PREDICTED: similar to F-box and WD-40 domain protein 1B isoform B
isoform 1 [Canis familiaris]
Length = 529
Score = 242 bits (617), Expect = 2e-63
Identities = 140/445 (31%), Positives = 229/445 (51%), Gaps = 32/445 (7%)
Frame = +2
Query: 1112 LKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPKE----LALYVL 1279
+K F WS +++ ++ LI Q H+ + P QRDFI+ LP++ +A +L
Sbjct: 64 IKYFDQWSESDQVEFVEHLISRMCHYQHGHINSYLKPMLQRDFITALPEQGLDHIAENIL 123
Query: 1280 SFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLH-------------IKRRK 1420
S+L+ + L A C+ W+ + + +LW++ + +PL K R
Sbjct: 124 SYLDARSLCAAELVCKEWQRVISEGMLWKKLIERMVRTDPLWKGLSERRGWDQYLFKNRP 183
Query: 1421 VIKP--GFIHSPWKSAYIRQHRIDTNWRRGELKSPKV-LKGHDDHVITCLQFCGNRIVSG 1591
P F S + I++NWR G ++ + + + CLQ+ +I+SG
Sbjct: 184 TDGPPNSFYRSLYPKIIQDIETIESNWRCGRHNLQRIQCRSENSKGVYCLQYDDEKIISG 243
Query: 1592 SDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLRVWNAETGECIHTL 1771
DN++K+W + +CL+ L GHTG V Q + +I++GS+D T+RVW+ TGE ++TL
Sbjct: 244 LRDNSIKIWDKTSLECLKVLTGHTGSVLCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTL 303
Query: 1772 YGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCL---HVLMGHVAAVRCVQYDGRRV 1942
H V + +V+ S+D ++ VWD+ + + VL+GH AAV V +D + +
Sbjct: 304 IHHNEAVLHLRFSNGLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYI 363
Query: 1943 VSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCI 2122
VS + D +KVW T + TL GH + LQ+ VVSGS D +IR+WD+E G C+
Sbjct: 364 VSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACL 423
Query: 2123 HTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTG---------QCLQTLQGPNKHQS 2275
L GH+ L + + +VSG D +K+WD++ CL+TL +H
Sbjct: 424 RVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLV---EHSG 480
Query: 2276 AVTCLQFNKNFVITSSDDGTVKLWD 2350
V LQF++ +I+SS D T+ +WD
Sbjct: 481 RVFRLQFDEFQIISSSHDDTILIWD 505
Score = 68.2 bits (165), Expect = 4e-11
Identities = 28/75 (37%), Positives = 49/75 (65%)
Frame = +2
Query: 2159 MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV 2338
++ D ++SG D+++KIWD + +CL+ L G H +V CLQ+++ ++T S D TV
Sbjct: 233 LQYDDEKIISGLRDNSIKIWDKTSLECLKVLTG---HTGSVLCLQYDERVIVTGSSDSTV 289
Query: 2339 KLWDLKTGEFIRNLV 2383
++WD+ TGE + L+
Sbjct: 290 RVWDVNTGEVLNTLI 304
>ref|XP_866580.1| PREDICTED: similar to F-box and WD-40 domain protein 1B isoform B
isoform 6 [Canis familiaris]
Length = 510
Score = 242 bits (617), Expect = 2e-63
Identities = 140/445 (31%), Positives = 229/445 (51%), Gaps = 32/445 (7%)
Frame = +2
Query: 1112 LKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPKE----LALYVL 1279
+K F WS +++ ++ LI Q H+ + P QRDFI+ LP++ +A +L
Sbjct: 45 IKYFDQWSESDQVEFVEHLISRMCHYQHGHINSYLKPMLQRDFITALPEQGLDHIAENIL 104
Query: 1280 SFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLH-------------IKRRK 1420
S+L+ + L A C+ W+ + + +LW++ + +PL K R
Sbjct: 105 SYLDARSLCAAELVCKEWQRVISEGMLWKKLIERMVRTDPLWKGLSERRGWDQYLFKNRP 164
Query: 1421 VIKP--GFIHSPWKSAYIRQHRIDTNWRRGELKSPKV-LKGHDDHVITCLQFCGNRIVSG 1591
P F S + I++NWR G ++ + + + CLQ+ +I+SG
Sbjct: 165 TDGPPNSFYRSLYPKIIQDIETIESNWRCGRHNLQRIQCRSENSKGVYCLQYDDEKIISG 224
Query: 1592 SDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLRVWNAETGECIHTL 1771
DN++K+W + +CL+ L GHTG V Q + +I++GS+D T+RVW+ TGE ++TL
Sbjct: 225 LRDNSIKIWDKTSLECLKVLTGHTGSVLCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTL 284
Query: 1772 YGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCL---HVLMGHVAAVRCVQYDGRRV 1942
H V + +V+ S+D ++ VWD+ + + VL+GH AAV V +D + +
Sbjct: 285 IHHNEAVLHLRFSNGLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYI 344
Query: 1943 VSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCI 2122
VS + D +KVW T + TL GH + LQ+ VVSGS D +IR+WD+E G C+
Sbjct: 345 VSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACL 404
Query: 2123 HTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTG---------QCLQTLQGPNKHQS 2275
L GH+ L + + +VSG D +K+WD++ CL+TL +H
Sbjct: 405 RVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLV---EHSG 461
Query: 2276 AVTCLQFNKNFVITSSDDGTVKLWD 2350
V LQF++ +I+SS D T+ +WD
Sbjct: 462 RVFRLQFDEFQIISSSHDDTILIWD 486
Score = 68.2 bits (165), Expect = 4e-11
Identities = 28/75 (37%), Positives = 49/75 (65%)
Frame = +2
Query: 2159 MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV 2338
++ D ++SG D+++KIWD + +CL+ L G H +V CLQ+++ ++T S D TV
Sbjct: 214 LQYDDEKIISGLRDNSIKIWDKTSLECLKVLTG---HTGSVLCLQYDERVIVTGSSDSTV 270
Query: 2339 KLWDLKTGEFIRNLV 2383
++WD+ TGE + L+
Sbjct: 271 RVWDVNTGEVLNTLI 285
Database: RefSeqCP
Posted date: Aug 1, 2006 9:25 PM
Number of letters in database: 19,266,565
Number of sequences in database: 33,732
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,729,778
Number of Sequences: 33732
Number of extensions: 2624527
Number of successful extensions: 13537
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 7229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10500
length of database: 19,266,565
effective HSP length: 112
effective length of database: 15,488,581
effective search space used: 11771321560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PBL01_0074_B12
(2620 letters)
Database: RefSeqHP
39,411 sequences; 17,774,539 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_361014.1| F-box protein FBW7 isoform 1 [Homo sapiens] 1214 0.0
Alignment gi|NP_060785.2| F-box protein FBW7 isoform 2 [Homo sapiens] 1093 0.0
Alignment gi|NP_001013433.1| F-box protein FBW7 isoform 3 [Homo sapiens] 1092 0.0
Alignment gi|NP_036432.2| F-box and WD-40 domain protein 1B isoform C [Ho... 242 1e-63
Alignment gi|NP_387449.2| F-box and WD-40 domain protein 1B isoform A [Ho... 242 1e-63
Alignment gi|NP_387448.2| F-box and WD-40 domain protein 1B isoform B [Ho... 242 1e-63
Alignment gi|NP_378663.1| beta-transducin repeat containing protein isofo... 237 3e-62
Alignment gi|NP_003930.1| beta-transducin repeat containing protein isofo... 237 3e-62
Alignment gi|NP_849143.1| hypothetical protein LOC164781 [Homo sapiens] 182 1e-45
Alignment gi|NP_438172.1| WD repeat domain 5 [Homo sapiens] 168 2e-41
>ref|NP_361014.1| F-box protein FBW7 isoform 1 [Homo sapiens]
Length = 707
Score = 1214 bits (3142), Expect = 0.0
Identities = 606/707 (85%), Positives = 608/707 (85%), Gaps = 2/707 (0%)
Frame = +2
Query: 407 MNQELLSVGSKRRRTGGSLRGNPSSSQADXXXXXXXXXXXXXXXXXXXX--HTARNGEVV 580
MNQELLSVGSKRRRTGGSLRGNPSSSQ D HTARNGEVV
Sbjct: 1 MNQELLSVGSKRRRTGGSLRGNPSSSQVDEEQMNRVVEEEQQQQLRQQEEEHTARNGEVV 60
Query: 581 GAEPRPGAQNASQQGQLEENNNRFISVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 760
G EPRPG QN SQQGQLEENNNRFISV
Sbjct: 61 GVEPRPGGQNDSQQGQLEENNNRFISVDEDSSGNQEEQEEDEEHAGEQDEEDEEEEEMDQ 120
Query: 761 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLPIHQLSSPFYTKTTKMKRKLDHGSEVRS 940
DLP+HQLSSPFYTKTTKMKRKLDHGSEVRS
Sbjct: 121 ESDDFDQSDDSSREDEHTHTNSVTNSSSIVDLPVHQLSSPFYTKTTKMKRKLDHGSEVRS 180
Query: 941 FSLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAANXXXXXXXXITSVQPPTGLQEWLKM 1120
FSLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAAN ITSVQPPTGLQEWLKM
Sbjct: 181 FSLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAANGQGQQRRRITSVQPPTGLQEWLKM 240
Query: 1121 FQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPKELALYVLSFLEPKD 1300
FQSWSGPEKLLALDELIDSCEPTQVKHMMQVI PQFQRDFISLLPKELALYVLSFLEPKD
Sbjct: 241 FQSWSGPEKLLALDELIDSCEPTQVKHMMQVIEPQFQRDFISLLPKELALYVLSFLEPKD 300
Query: 1301 LLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQHR 1480
LLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQHR
Sbjct: 301 LLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQHR 360
Query: 1481 IDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGH 1660
IDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGH
Sbjct: 361 IDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGH 420
Query: 1661 TGGVWSSQMRDNIIISGSTDRTLRVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRD 1840
TGGVWSSQMRDNIIISGSTDRTL+VWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRD
Sbjct: 421 TGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRD 480
Query: 1841 ATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGH 2020
ATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGH
Sbjct: 481 ATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGH 540
Query: 2021 TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNAD 2200
TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNAD
Sbjct: 541 TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNAD 600
Query: 2201 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNL 2380
STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNL
Sbjct: 601 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNL 660
Query: 2381 VTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEEAKLLVLDFDVDMK 2521
VTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEE KLLVLDFDVDMK
Sbjct: 661 VTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVDMK 707
>ref|NP_060785.2| F-box protein FBW7 isoform 2 [Homo sapiens]
Length = 627
Score = 1093 bits (2828), Expect = 0.0
Identities = 530/541 (97%), Positives = 531/541 (98%)
Frame = +2
Query: 899 KMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAANXXXXXXXXIT 1078
KMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAAN IT
Sbjct: 87 KMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAANGQGQQRRRIT 146
Query: 1079 SVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPK 1258
SVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVI PQFQRDFISLLPK
Sbjct: 147 SVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIEPQFQRDFISLLPK 206
Query: 1259 ELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGF 1438
ELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGF
Sbjct: 207 ELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGF 266
Query: 1439 IHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVW 1618
IHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVW
Sbjct: 267 IHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVW 326
Query: 1619 SAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLRVWNAETGECIHTLYGHTSTVRC 1798
SAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTL+VWNAETGECIHTLYGHTSTVRC
Sbjct: 327 SAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRC 386
Query: 1799 MHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVW 1978
MHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVW
Sbjct: 387 MHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVW 446
Query: 1979 DPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG 2158
DPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG
Sbjct: 447 DPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG 506
Query: 2159 MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV 2338
MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV
Sbjct: 507 MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV 566
Query: 2339 KLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEEAKLLVLDFDVDM 2518
KLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEE KLLVLDFDVDM
Sbjct: 567 KLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVDM 626
Query: 2519 K 2521
K
Sbjct: 627 K 627
>ref|NP_001013433.1| F-box protein FBW7 isoform 3 [Homo sapiens]
Length = 589
Score = 1092 bits (2825), Expect = 0.0
Identities = 529/541 (97%), Positives = 531/541 (98%)
Frame = +2
Query: 899 KMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAANXXXXXXXXIT 1078
+MKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAAN IT
Sbjct: 49 RMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAANGQGQQRRRIT 108
Query: 1079 SVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPK 1258
SVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVI PQFQRDFISLLPK
Sbjct: 109 SVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIEPQFQRDFISLLPK 168
Query: 1259 ELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGF 1438
ELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGF
Sbjct: 169 ELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGF 228
Query: 1439 IHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVW 1618
IHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVW
Sbjct: 229 IHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVW 288
Query: 1619 SAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLRVWNAETGECIHTLYGHTSTVRC 1798
SAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTL+VWNAETGECIHTLYGHTSTVRC
Sbjct: 289 SAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRC 348
Query: 1799 MHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVW 1978
MHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVW
Sbjct: 349 MHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVW 408
Query: 1979 DPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG 2158
DPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG
Sbjct: 409 DPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG 468
Query: 2159 MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV 2338
MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV
Sbjct: 469 MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV 528
Query: 2339 KLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEEAKLLVLDFDVDM 2518
KLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEE KLLVLDFDVDM
Sbjct: 529 KLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVDM 588
Query: 2519 K 2521
K
Sbjct: 589 K 589
>ref|NP_036432.2| F-box and WD-40 domain protein 1B isoform C [Homo sapiens]
Length = 542
Score = 242 bits (617), Expect = 1e-63
Identities = 140/445 (31%), Positives = 229/445 (51%), Gaps = 32/445 (7%)
Frame = +2
Query: 1112 LKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPKE----LALYVL 1279
+K F WS +++ ++ LI Q H+ + P QRDFI+ LP++ +A +L
Sbjct: 77 IKYFDQWSESDQVEFVEHLISRMCHYQHGHINSYLKPMLQRDFITALPEQGLDHIAENIL 136
Query: 1280 SFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLH-------------IKRRK 1420
S+L+ + L A C+ W+ + + +LW++ + +PL K R
Sbjct: 137 SYLDARSLCAAELVCKEWQRVISEGMLWKKLIERMVRTDPLWKGLSERRGWDQYLFKNRP 196
Query: 1421 VIKP--GFIHSPWKSAYIRQHRIDTNWRRGELKSPKV-LKGHDDHVITCLQFCGNRIVSG 1591
P F S + I++NWR G ++ + + + CLQ+ +I+SG
Sbjct: 197 TDGPPNSFYRSLYPKIIQDIETIESNWRCGRHNLQRIQCRSENSKGVYCLQYDDEKIISG 256
Query: 1592 SDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLRVWNAETGECIHTL 1771
DN++K+W + +CL+ L GHTG V Q + +I++GS+D T+RVW+ TGE ++TL
Sbjct: 257 LRDNSIKIWDKTSLECLKVLTGHTGSVLCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTL 316
Query: 1772 YGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCL---HVLMGHVAAVRCVQYDGRRV 1942
H V + +V+ S+D ++ VWD+ + + VL+GH AAV V +D + +
Sbjct: 317 IHHNEAVLHLRFSNGLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYI 376
Query: 1943 VSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCI 2122
VS + D +KVW T + TL GH + LQ+ VVSGS D +IR+WD+E G C+
Sbjct: 377 VSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACL 436
Query: 2123 HTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTG---------QCLQTLQGPNKHQS 2275
L GH+ L + + +VSG D +K+WD++ CL+TL +H
Sbjct: 437 RVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLV---EHSG 493
Query: 2276 AVTCLQFNKNFVITSSDDGTVKLWD 2350
V LQF++ +I+SS D T+ +WD
Sbjct: 494 RVFRLQFDEFQIISSSHDDTILIWD 518
Score = 68.2 bits (165), Expect = 3e-11
Identities = 28/75 (37%), Positives = 49/75 (65%)
Frame = +2
Query: 2159 MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV 2338
++ D ++SG D+++KIWD + +CL+ L G H +V CLQ+++ ++T S D TV
Sbjct: 246 LQYDDEKIISGLRDNSIKIWDKTSLECLKVLTG---HTGSVLCLQYDERVIVTGSSDSTV 302
Query: 2339 KLWDLKTGEFIRNLV 2383
++WD+ TGE + L+
Sbjct: 303 RVWDVNTGEVLNTLI 317
>ref|NP_387449.2| F-box and WD-40 domain protein 1B isoform A [Homo sapiens]
Length = 508
Score = 242 bits (617), Expect = 1e-63
Identities = 140/445 (31%), Positives = 229/445 (51%), Gaps = 32/445 (7%)
Frame = +2
Query: 1112 LKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPKE----LALYVL 1279
+K F WS +++ ++ LI Q H+ + P QRDFI+ LP++ +A +L
Sbjct: 43 IKYFDQWSESDQVEFVEHLISRMCHYQHGHINSYLKPMLQRDFITALPEQGLDHIAENIL 102
Query: 1280 SFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLH-------------IKRRK 1420
S+L+ + L A C+ W+ + + +LW++ + +PL K R
Sbjct: 103 SYLDARSLCAAELVCKEWQRVISEGMLWKKLIERMVRTDPLWKGLSERRGWDQYLFKNRP 162
Query: 1421 VIKP--GFIHSPWKSAYIRQHRIDTNWRRGELKSPKV-LKGHDDHVITCLQFCGNRIVSG 1591
P F S + I++NWR G ++ + + + CLQ+ +I+SG
Sbjct: 163 TDGPPNSFYRSLYPKIIQDIETIESNWRCGRHNLQRIQCRSENSKGVYCLQYDDEKIISG 222
Query: 1592 SDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLRVWNAETGECIHTL 1771
DN++K+W + +CL+ L GHTG V Q + +I++GS+D T+RVW+ TGE ++TL
Sbjct: 223 LRDNSIKIWDKTSLECLKVLTGHTGSVLCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTL 282
Query: 1772 YGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCL---HVLMGHVAAVRCVQYDGRRV 1942
H V + +V+ S+D ++ VWD+ + + VL+GH AAV V +D + +
Sbjct: 283 IHHNEAVLHLRFSNGLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYI 342
Query: 1943 VSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCI 2122
VS + D +KVW T + TL GH + LQ+ VVSGS D +IR+WD+E G C+
Sbjct: 343 VSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACL 402
Query: 2123 HTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTG---------QCLQTLQGPNKHQS 2275
L GH+ L + + +VSG D +K+WD++ CL+TL +H
Sbjct: 403 RVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLV---EHSG 459
Query: 2276 AVTCLQFNKNFVITSSDDGTVKLWD 2350
V LQF++ +I+SS D T+ +WD
Sbjct: 460 RVFRLQFDEFQIISSSHDDTILIWD 484
Score = 68.2 bits (165), Expect = 3e-11
Identities = 28/75 (37%), Positives = 49/75 (65%)
Frame = +2
Query: 2159 MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV 2338
++ D ++SG D+++KIWD + +CL+ L G H +V CLQ+++ ++T S D TV
Sbjct: 212 LQYDDEKIISGLRDNSIKIWDKTSLECLKVLTG---HTGSVLCLQYDERVIVTGSSDSTV 268
Query: 2339 KLWDLKTGEFIRNLV 2383
++WD+ TGE + L+
Sbjct: 269 RVWDVNTGEVLNTLI 283
>ref|NP_387448.2| F-box and WD-40 domain protein 1B isoform B [Homo sapiens]
Length = 529
Score = 242 bits (617), Expect = 1e-63
Identities = 140/445 (31%), Positives = 229/445 (51%), Gaps = 32/445 (7%)
Frame = +2
Query: 1112 LKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPKE----LALYVL 1279
+K F WS +++ ++ LI Q H+ + P QRDFI+ LP++ +A +L
Sbjct: 64 IKYFDQWSESDQVEFVEHLISRMCHYQHGHINSYLKPMLQRDFITALPEQGLDHIAENIL 123
Query: 1280 SFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLH-------------IKRRK 1420
S+L+ + L A C+ W+ + + +LW++ + +PL K R
Sbjct: 124 SYLDARSLCAAELVCKEWQRVISEGMLWKKLIERMVRTDPLWKGLSERRGWDQYLFKNRP 183
Query: 1421 VIKP--GFIHSPWKSAYIRQHRIDTNWRRGELKSPKV-LKGHDDHVITCLQFCGNRIVSG 1591
P F S + I++NWR G ++ + + + CLQ+ +I+SG
Sbjct: 184 TDGPPNSFYRSLYPKIIQDIETIESNWRCGRHNLQRIQCRSENSKGVYCLQYDDEKIISG 243
Query: 1592 SDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLRVWNAETGECIHTL 1771
DN++K+W + +CL+ L GHTG V Q + +I++GS+D T+RVW+ TGE ++TL
Sbjct: 244 LRDNSIKIWDKTSLECLKVLTGHTGSVLCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTL 303
Query: 1772 YGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCL---HVLMGHVAAVRCVQYDGRRV 1942
H V + +V+ S+D ++ VWD+ + + VL+GH AAV V +D + +
Sbjct: 304 IHHNEAVLHLRFSNGLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYI 363
Query: 1943 VSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCI 2122
VS + D +KVW T + TL GH + LQ+ VVSGS D +IR+WD+E G C+
Sbjct: 364 VSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACL 423
Query: 2123 HTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTG---------QCLQTLQGPNKHQS 2275
L GH+ L + + +VSG D +K+WD++ CL+TL +H
Sbjct: 424 RVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLV---EHSG 480
Query: 2276 AVTCLQFNKNFVITSSDDGTVKLWD 2350
V LQF++ +I+SS D T+ +WD
Sbjct: 481 RVFRLQFDEFQIISSSHDDTILIWD 505
Score = 68.2 bits (165), Expect = 3e-11
Identities = 28/75 (37%), Positives = 49/75 (65%)
Frame = +2
Query: 2159 MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV 2338
++ D ++SG D+++KIWD + +CL+ L G H +V CLQ+++ ++T S D TV
Sbjct: 233 LQYDDEKIISGLRDNSIKIWDKTSLECLKVLTG---HTGSVLCLQYDERVIVTGSSDSTV 289
Query: 2339 KLWDLKTGEFIRNLV 2383
++WD+ TGE + L+
Sbjct: 290 RVWDVNTGEVLNTLI 304
>ref|NP_378663.1| beta-transducin repeat containing protein isoform 1 [Homo sapiens]
Length = 605
Score = 237 bits (605), Expect = 3e-62
Identities = 146/447 (32%), Positives = 230/447 (51%), Gaps = 34/447 (7%)
Frame = +2
Query: 1112 LKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPKE----LALYVL 1279
+K F+ WS +++ ++ LI Q H+ + P QRDFI+ LP +A +L
Sbjct: 138 VKYFEQWSESDQVEFVEHLISQMCHYQHGHINSYLKPMLQRDFITALPARGLDHIAENIL 197
Query: 1280 SFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLH---IKRRK------VIKP 1432
S+L+ K L A C+ W + D +LW++ + + L +RR KP
Sbjct: 198 SYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKP 257
Query: 1433 GFIHSPWKSAYIRQH--------RIDTNWRRGELKSPKV-LKGHDDHVITCLQFCGNRIV 1585
++P S Y + I++NWR G ++ + + CLQ+ +IV
Sbjct: 258 PDGNAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIV 317
Query: 1586 SGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLRVWNAETGECIH 1765
SG DNT+K+W T +C R L GHTG V Q + +II+GS+D T+RVW+ TGE ++
Sbjct: 318 SGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLN 377
Query: 1766 TLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCL---HVLMGHVAAVRCVQYDGR 1936
TL H V + + +V+ S+D ++ VWD+ + + VL+GH AAV V +D +
Sbjct: 378 TLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK 437
Query: 1937 RVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGN 2116
+VS + D +KVW+ T + TL GH + LQ+ VVSGS D +IR+WD+E G
Sbjct: 438 YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGA 497
Query: 2117 CIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTG---------QCLQTLQGPNKH 2269
C+ L GH+ L + + +VSG D +K+WD+ CL+TL +H
Sbjct: 498 CLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV---EH 554
Query: 2270 QSAVTCLQFNKNFVITSSDDGTVKLWD 2350
V LQF++ +++SS D T+ +WD
Sbjct: 555 SGRVFRLQFDEFQIVSSSHDDTILIWD 581
Score = 154 bits (388), Expect = 5e-37
Identities = 86/260 (33%), Positives = 141/260 (54%), Gaps = 3/260 (1%)
Frame = +2
Query: 1760 IHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRR 1939
IH + V C+ ++++VSG RD T+++WD T +C +L GH +V C+QYD R
Sbjct: 296 IHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV 355
Query: 1940 VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNC 2119
+++G+ D V+VWD T L+TL H V L+F+ +V+ S D SI VWD+ +
Sbjct: 356 IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD 415
Query: 2120 I---HTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCL 2290
I L GH++ + ++ D +VS + D T+K+W+ T + ++TL G H+ + CL
Sbjct: 416 ITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNG---HKRGIACL 472
Query: 2291 QFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRN 2470
Q+ V++ S D T++LWD++ G +R L G +V IR N ++V +
Sbjct: 473 QYRDRLVVSGSSDNTIRLWDIECGACLRVL-----EGHEELVRCIRFDNKRIV------S 521
Query: 2471 GTEEAKLLVLDFDVDMK*RA 2530
G + K+ V D + RA
Sbjct: 522 GAYDGKIKVWDLVAALDPRA 541
>ref|NP_003930.1| beta-transducin repeat containing protein isoform 2 [Homo sapiens]
Length = 569
Score = 237 bits (605), Expect = 3e-62
Identities = 146/447 (32%), Positives = 230/447 (51%), Gaps = 34/447 (7%)
Frame = +2
Query: 1112 LKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPKE----LALYVL 1279
+K F+ WS +++ ++ LI Q H+ + P QRDFI+ LP +A +L
Sbjct: 102 VKYFEQWSESDQVEFVEHLISQMCHYQHGHINSYLKPMLQRDFITALPARGLDHIAENIL 161
Query: 1280 SFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLH---IKRRK------VIKP 1432
S+L+ K L A C+ W + D +LW++ + + L +RR KP
Sbjct: 162 SYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKP 221
Query: 1433 GFIHSPWKSAYIRQH--------RIDTNWRRGELKSPKV-LKGHDDHVITCLQFCGNRIV 1585
++P S Y + I++NWR G ++ + + CLQ+ +IV
Sbjct: 222 PDGNAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIV 281
Query: 1586 SGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLRVWNAETGECIH 1765
SG DNT+K+W T +C R L GHTG V Q + +II+GS+D T+RVW+ TGE ++
Sbjct: 282 SGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLN 341
Query: 1766 TLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCL---HVLMGHVAAVRCVQYDGR 1936
TL H V + + +V+ S+D ++ VWD+ + + VL+GH AAV V +D +
Sbjct: 342 TLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK 401
Query: 1937 RVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGN 2116
+VS + D +KVW+ T + TL GH + LQ+ VVSGS D +IR+WD+E G
Sbjct: 402 YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGA 461
Query: 2117 CIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTG---------QCLQTLQGPNKH 2269
C+ L GH+ L + + +VSG D +K+WD+ CL+TL +H
Sbjct: 462 CLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV---EH 518
Query: 2270 QSAVTCLQFNKNFVITSSDDGTVKLWD 2350
V LQF++ +++SS D T+ +WD
Sbjct: 519 SGRVFRLQFDEFQIVSSSHDDTILIWD 545
Score = 154 bits (388), Expect = 5e-37
Identities = 86/260 (33%), Positives = 141/260 (54%), Gaps = 3/260 (1%)
Frame = +2
Query: 1760 IHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRR 1939
IH + V C+ ++++VSG RD T+++WD T +C +L GH +V C+QYD R
Sbjct: 260 IHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV 319
Query: 1940 VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNC 2119
+++G+ D V+VWD T L+TL H V L+F+ +V+ S D SI VWD+ +
Sbjct: 320 IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD 379
Query: 2120 I---HTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCL 2290
I L GH++ + ++ D +VS + D T+K+W+ T + ++TL G H+ + CL
Sbjct: 380 ITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNG---HKRGIACL 436
Query: 2291 QFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRN 2470
Q+ V++ S D T++LWD++ G +R L G +V IR N ++V +
Sbjct: 437 QYRDRLVVSGSSDNTIRLWDIECGACLRVL-----EGHEELVRCIRFDNKRIV------S 485
Query: 2471 GTEEAKLLVLDFDVDMK*RA 2530
G + K+ V D + RA
Sbjct: 486 GAYDGKIKVWDLVAALDPRA 505
>ref|NP_849143.1| hypothetical protein LOC164781 [Homo sapiens]
Length = 415
Score = 182 bits (463), Expect = 1e-45
Identities = 99/301 (32%), Positives = 172/301 (57%), Gaps = 14/301 (4%)
Frame = +2
Query: 1520 KVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD- 1693
KVLK H + L G+ ++GS D T K+W +G+ L TL GH V++ +
Sbjct: 86 KVLKAHILPLTNVALNKSGSCFITGSYDRTCKLWDTASGEELNTLEGHRNVVYAIAFNNP 145
Query: 1694 --NIIISGSTDRTLRVWNAETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWD 1861
+ I +GS D+T ++W+ ETG+C HT GHT+ + C+ + + V +GS D T ++WD
Sbjct: 146 YGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWD 205
Query: 1862 IETGQCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY 2035
I+ G+ ++ L GH A + + ++ G R+++G++D V VWD +T ++ L GH +
Sbjct: 206 IQNGEEVYTLRGHSAEIISLSFNTSGDRIITGSFDHTVVVWDADTGRKVNILIGHCAEIS 265
Query: 2036 SLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGH--QSLTSGMELKDNILVSGNADS 2203
S F D +++GS+D + ++WD G C+ TLTGH + L S + ++ + +AD
Sbjct: 266 SASFNWDCSLILTGSMDKTCKLWDATNGKCVATLTGHDDEILDSCFDYTGKLIATASADG 325
Query: 2204 TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKLWDLKTGEFIRN 2377
T +I+ T +C+ L+G H+ ++ + FN N ++T S D T ++WD +TG+ ++
Sbjct: 326 TARIFSAATRKCIAKLEG---HEGEISKISFNPQGNHLLTGSSDKTARIWDAQTGQCLQV 382
Query: 2378 L 2380
L
Sbjct: 383 L 383
Score = 175 bits (444), Expect = 2e-43
Identities = 100/300 (33%), Positives = 163/300 (54%), Gaps = 15/300 (5%)
Frame = +2
Query: 1493 WRRGELKSPKVLKGHDDHVITCLQF---CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT 1663
W + L+GH + V+ + F G++I +GS D T K+WS TGKC T GHT
Sbjct: 119 WDTASGEELNTLEGHRN-VVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHT 177
Query: 1664 GGV--WSSQMRDNIIISGSTDRTLRVWNAETGECIHTLYGHTSTVRCMHLHEK--RVVSG 1831
+ S + ++ +GS D T ++W+ + GE ++TL GH++ + + + R+++G
Sbjct: 178 AEIVCLSFNPQSTLVATGSMDTTAKLWDIQNGEEVYTLRGHSAEIISLSFNTSGDRIITG 237
Query: 1832 SRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLH 2005
S D T+ VWD +TG+ +++L+GH A + + D +++G+ D K+WD C+
Sbjct: 238 SFDHTVVVWDADTGRKVNILIGHCAEISSASFNWDCSLILTGSMDKTCKLWDATNGKCVA 297
Query: 2006 TLQGHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KD 2173
TL GH + + FD G + + S D + R++ T CI L GH+ S + +
Sbjct: 298 TLTGHDDEILDSCFDYTGKLIATASADGTARIFSAATRKCIAKLEGHEGEISKISFNPQG 357
Query: 2174 NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLW 2347
N L++G++D T +IWD +TGQCLQ L+G H + FN N VIT S D T ++W
Sbjct: 358 NHLLTGSSDKTARIWDAQTGQCLQVLEG---HTDEIFSCAFNYKGNIVITGSKDNTCRIW 414
Score = 108 bits (269), Expect = 3e-23
Identities = 60/175 (34%), Positives = 98/175 (56%), Gaps = 9/175 (5%)
Frame = +2
Query: 1886 VLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--- 2050
VL H+ + V + G ++G+YD K+WD + L+TL+GH N VY++ F+
Sbjct: 87 VLKAHILPLTNVALNKSGSCFITGSYDRTCKLWDTASGEELNTLEGHRNVVYAIAFNNPY 146
Query: 2051 GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--LTSGMELKDNILVSGNADSTVKIWDI 2224
G + +GS D + ++W VETG C HT GH + + + ++ +G+ D+T K+WDI
Sbjct: 147 GDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDI 206
Query: 2225 KTGQCLQTLQGPNKHQSAVTCLQFNKNF--VITSSDDGTVKLWDLKTGEFIRNLV 2383
+ G+ + TL+G H + + L FN + +IT S D TV +WD TG + L+
Sbjct: 207 QNGEEVYTLRG---HSAEIISLSFNTSGDRIITGSFDHTVVVWDADTGRKVNILI 258
>ref|NP_438172.1| WD repeat domain 5 [Homo sapiens]
Length = 334
Score = 168 bits (426), Expect = 2e-41
Identities = 97/284 (34%), Positives = 162/284 (57%), Gaps = 25/284 (8%)
Frame = +2
Query: 1571 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV----WSSQMRDNIIISGSTDRTLRVW 1738
G + S S D +K+W A GK +T+ GH G+ WSS N+++S S D+TL++W
Sbjct: 57 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD--SNLLVSASDDKTLKIW 114
Query: 1739 NAETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDIETGQCLHVLMGHVAAV 1912
+ +G+C+ TL GH++ V C + + + +VSGS D ++R+WD++TG+CL L H V
Sbjct: 115 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 174
Query: 1913 RCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS-LQF--DGIHVVSGSL 2077
V + DG +VS +YD + ++WD + CL TL N S ++F +G ++++ +L
Sbjct: 175 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 234
Query: 2078 DTSIRVWDVETGNCIHTLTGHQ----------SLTSGMELKDNILVSGNADSTVKIWDIK 2227
D ++++WD G C+ T TGH+ S+T G +VSG+ D+ V IW+++
Sbjct: 235 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG-----KWIVSGSEDNLVYIWNLQ 289
Query: 2228 TGQCLQTLQGPNKHQSAV--TCLQFNKNFVITSS--DDGTVKLW 2347
T + +Q LQG H V T +N + +++ +D T+KLW
Sbjct: 290 TKEIVQKLQG---HTDVVISTACHPTENIIASAALENDKTIKLW 330
Score = 144 bits (363), Expect = 4e-34
Identities = 84/259 (32%), Positives = 135/259 (52%), Gaps = 17/259 (6%)
Frame = +2
Query: 1493 WRRGELKSPKVLKGHDDHVI-TCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 1669
W + K K + GH + N +VS SDD TLK+W +GKCL+TL GH+
Sbjct: 72 WGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY 131
Query: 1670 VWSSQM--RDNIIISGSTDRTLRVWNAETGECIHTLYGHTSTVRCMHLHE--KRVVSGSR 1837
V+ + N+I+SGS D ++R+W+ +TG+C+ TL H+ V +H + +VS S
Sbjct: 132 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 191
Query: 1838 DATLRVWDIETGQCLHVLM-GHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHT 2008
D R+WD +GQCL L+ V V++ +G+ +++ D +K+WD CL T
Sbjct: 192 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 251
Query: 2009 LQGHTNRVYSLQFD-----GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--LTSGMEL 2167
GH N Y + + G +VSGS D + +W+++T + L GH +++
Sbjct: 252 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 311
Query: 2168 KDNILVSG--NADSTVKIW 2218
+NI+ S D T+K+W
Sbjct: 312 TENIIASAALENDKTIKLW 330
Score = 144 bits (362), Expect = 5e-34
Identities = 84/261 (32%), Positives = 141/261 (54%), Gaps = 16/261 (6%)
Frame = +2
Query: 1646 TLVGHTGGVWSSQMRDN--IIISGSTDRTLRVWNAETGECIHTLYGHTSTVR--CMHLHE 1813
TL GHT V S + N + S S D+ +++W A G+ T+ GH +
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99
Query: 1814 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRR--VVSGAYDFMVKVWDPE 1987
+VS S D TL++WD+ +G+CL L GH V C ++ + +VSG++D V++WD +
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 159
Query: 1988 TETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSL-TSG 2158
T CL TL H++ V ++ F DG +VS S D R+WD +G C+ TL + S
Sbjct: 160 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 219
Query: 2159 MELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN-----FVIT 2317
++ N +++ D+T+K+WD G+CL+T G H++ C+ N + ++++
Sbjct: 220 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG---HKNEKYCIFANFSVTGGKWIVS 276
Query: 2318 SSDDGTVKLWDLKTGEFIRNL 2380
S+D V +W+L+T E ++ L
Sbjct: 277 GSEDNLVYIWNLQTKEIVQKL 297
Score = 107 bits (267), Expect = 5e-23
Identities = 56/173 (32%), Positives = 99/173 (57%), Gaps = 8/173 (4%)
Frame = +2
Query: 1889 LMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGI 2056
L GH AV V++ +G + S + D ++K+W T+ GH + + + D
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 100
Query: 2057 HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT--SGMELKDNILVSGNADSTVKIWDIKT 2230
+VS S D ++++WDV +G C+ TL GH + + N++VSG+ D +V+IWD+KT
Sbjct: 101 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 160
Query: 2231 GQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKLWDLKTGEFIRNLV 2383
G+CL+TL H V+ + FN+ + +++SS DG ++WD +G+ ++ L+
Sbjct: 161 GKCLKTLPA---HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 210
Database: RefSeqHP
Posted date: Aug 2, 2006 12:57 AM
Number of letters in database: 17,774,539
Number of sequences in database: 39,411
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,269,051
Number of Sequences: 39411
Number of extensions: 2597800
Number of successful extensions: 12800
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 7106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10327
length of database: 17,774,539
effective HSP length: 111
effective length of database: 13,399,918
effective search space used: 10197337598
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqSP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PBL01_0074_B12
(2620 letters)
Database: RefSeqSP
1040 sequences; 434,620 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999415.1| platelet-activating factor acetylhydrolase Ib-a... 160 1e-40
Alignment gi|NP_999497.1| G-beta like protein [Sus scrofa] 82 5e-17
Alignment gi|NP_001012296.1| fizzy/cell division cycle 20 related 1 [Sus ... 67 2e-12
>ref|NP_999415.1| platelet-activating factor acetylhydrolase Ib-alpha subunit [Sus
scrofa]
Length = 410
Score = 160 bits (406), Expect = 1e-40
Identities = 97/291 (33%), Positives = 153/291 (52%), Gaps = 32/291 (10%)
Frame = +2
Query: 1580 IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW--SSQMRDNIIISGSTDRTLRVWNAETG 1753
+VS S+D T+KVW TG RTL GHT V S ++ S S D T+++W+ +
Sbjct: 123 MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF 182
Query: 1754 ECIHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQ- 1924
ECI T++GH V + + + +VS +RD T+++W+++TG C+ GH VR V+
Sbjct: 183 ECIRTMHGHDHNVSSVAIMPNGDHIVSAARDKTIKMWEVQTGYCVKTFTGHREWVRMVRP 242
Query: 1925 -YDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF------------------ 2047
DG + S + D V+VW T+ C L+ H + V + +
Sbjct: 243 NQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETK 302
Query: 2048 ----DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTV 2209
G ++SGS D +I++WDV TG C+ TL GH + G+ ++S D T+
Sbjct: 303 KSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTL 362
Query: 2210 KIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDLK 2356
++WD K +C++TL N H+ VT L F+K +V+T S D TVK+W+ +
Sbjct: 363 RVWDYKNKRCMKTL---NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 134 bits (338), Expect = 8e-33
Identities = 82/267 (30%), Positives = 130/267 (48%), Gaps = 31/267 (11%)
Frame = +2
Query: 1520 KVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN 1696
+ LKGH D V G + S S D T+K+W +C+RT+ GH V S + N
Sbjct: 144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPN 203
Query: 1697 --IIISGSTDRTLRVWNAETGECIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDI 1864
I+S + D+T+++W +TG C+ T GH VR + ++ + S S D T+RVW +
Sbjct: 204 GDHIVSAARDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 263
Query: 1865 ETGQCLHVLMGHVAAVRCVQY----------------------DGRRVVSGAYDFMVKVW 1978
T +C L H V C+ + G ++SG+ D +K+W
Sbjct: 264 ATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW 323
Query: 1979 DPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT 2152
D T CL TL GH N V + F G ++S + D ++RVWD + C+ TL H+
Sbjct: 324 DVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFV 383
Query: 2153 SGMELKDN--ILVSGNADSTVKIWDIK 2227
+ ++ +V+G+ D TVK+W+ +
Sbjct: 384 TSLDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 134 bits (336), Expect = 1e-32
Identities = 83/260 (31%), Positives = 136/260 (52%), Gaps = 31/260 (11%)
Frame = +2
Query: 1694 NIIISGSTDRTLRVWNAETGECIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIE 1867
++++S S D T++VW+ ETG+ TL GHT +V+ + K + S S D T+++WD +
Sbjct: 121 SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180
Query: 1868 TGQCLHVLMGH---VAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTN--RV 2032
+C+ + GH V++V + +G +VS A D +K+W+ +T C+ T GH R+
Sbjct: 181 GFECIRTMHGHDHNVSSV-AIMPNGDHIVSAARDKTIKMWEVQTGYCVKTFTGHREWVRM 239
Query: 2033 YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ-----------------SLTSGM 2161
DG + S S D ++RVW V T C L H+ S +G
Sbjct: 240 VRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGS 299
Query: 2162 ELKDN-----ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITS 2320
E K + L+SG+ D T+K+WD+ TG CL TL G H + V + F+ F+++
Sbjct: 300 ETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG---HDNWVRGVLFHSGGKFILSC 356
Query: 2321 SDDGTVKLWDLKTGEFIRNL 2380
+DD T+++WD K ++ L
Sbjct: 357 ADDKTLRVWDYKNKRCMKTL 376
Score = 124 bits (312), Expect = 8e-30
Identities = 72/237 (30%), Positives = 122/237 (51%), Gaps = 30/237 (12%)
Frame = +2
Query: 1763 HTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD-- 1930
+ L GH S V + H +VS S DAT++VWD ETG L GH +V+ + +D
Sbjct: 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 161
Query: 1931 GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDV 2104
G+ + S + D +K+WD + C+ T+ GH + V S+ +G H+VS + D +I++W+V
Sbjct: 162 GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSAARDKTIKMWEV 221
Query: 2105 ETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSA 2278
+TG C+ T TGH+ + + ++ S + D TV++W + T +C L+ +H+
Sbjct: 222 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR---EHEHV 278
Query: 2279 VTCLQFNKN----------------------FVITSSDDGTVKLWDLKTGEFIRNLV 2383
V C+ + F+++ S D T+K+WD+ TG + LV
Sbjct: 279 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV 335
>ref|NP_999497.1| G-beta like protein [Sus scrofa]
Length = 317
Score = 82.4 bits (202), Expect = 5e-17
Identities = 72/263 (27%), Positives = 113/263 (42%), Gaps = 25/263 (9%)
Frame = +2
Query: 1520 KVLKGHDDHVI-TCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV----WSSQ 1684
+ L+GH V + G +SGS D TL++W TG R VGHT V +SS
Sbjct: 57 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 116
Query: 1685 MRDNIIISGSTDRTLRVWNAETGECIHTLY--GHTSTVRCMHLHEKR----VVSGSRDAT 1846
R I+SGS D+T+++WN G C +T+ H+ V C+ +VS D
Sbjct: 117 NRQ--IVSGSRDKTIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKL 173
Query: 1847 LRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGH 2020
++VW++ + +GH + V DG SG D +WD L+TL G
Sbjct: 174 VKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG- 232
Query: 2021 TNRVYSLQFD-GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS-----------GME 2164
+ + +L F + + + SI++WD+E + L TS
Sbjct: 233 GDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWS 292
Query: 2165 LKDNILVSGNADSTVKIWDIKTG 2233
L +G D+ V++W + G
Sbjct: 293 ADGQTLFAGYTDNLVRVWQVTIG 315
Score = 49.7 bits (117), Expect = 3e-07
Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 11/133 (8%)
Frame = +2
Query: 1985 ETETCLHTLQGHTNRVYSL----QFDGIHVVSGSLDTSIRVWDV---ETGNCI--HTLTG 2137
E T TL+GH V + QF + ++S S D +I +W + ET I L G
Sbjct: 3 EQMTLRGTLKGHNGWVTQIATTPQFPDM-ILSASRDKTIIMWKLTRDETNYGIPQRALRG 61
Query: 2138 HQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFV 2311
H S + + + +SG+ D T+++WD+ TG + G K +V N+ +
Sbjct: 62 HSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQ-I 120
Query: 2312 ITSSDDGTVKLWD 2350
++ S D T+KLW+
Sbjct: 121 VSGSRDKTIKLWN 133
>ref|NP_001012296.1| fizzy/cell division cycle 20 related 1 [Sus scrofa]
Length = 493
Score = 67.4 bits (163), Expect = 2e-12
Identities = 74/315 (23%), Positives = 136/315 (43%), Gaps = 18/315 (5%)
Frame = +2
Query: 1538 DDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLR----TLVGH--TGGVWSSQMRDNI 1699
DD + + + ++S + +WSA T + R ++ G T WS R N+
Sbjct: 186 DDFYLNLVDWSSLNVLSVGLGTCVYLWSACTSQVTRLCDLSVEGDSVTSVGWSE--RGNL 243
Query: 1700 IISGSTDRTLRVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETG-- 1873
+ G+ +++W+A G+ + L GHT+ V + + ++ SGSRD + DI T
Sbjct: 244 VAVGTHKGFVQIWDAAAGKKLSMLEGHTARVGALAWNADQLSSGSRDRMILQRDIRTPPL 303
Query: 1874 QCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL-- 2041
Q L GH V +++ D + + SG D + VW+ + + + H V ++
Sbjct: 304 QSERRLQGHRQEVCGLKWSTDHQLLASGGNDNKLLVWNHSSLSPVQQYTEHLAAVKAIAW 363
Query: 2042 ---QFDGIHVVSGSLDTSIRVWDVETGNCIHTL-TGHQSLTSGMELKDNILVS--GNADS 2203
Q + G+ D IR W+ TG + + TG Q N LVS G + +
Sbjct: 364 SPHQHGLLASGGGTADRCIRFWNTLTGQPLQCIDTGSQVCNLAWSKHANELVSTHGYSQN 423
Query: 2204 TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLV 2383
+ +W + + L G + ++ + + ++T + D T++ W++ F +
Sbjct: 424 QILVWKYPSLTQVAKLTG-HSYRVLYLAMSPDGEAIVTGAGDETLRFWNV----FSKTRS 478
Query: 2384 TLESGGSGGVVWRIR 2428
T ES + RIR
Sbjct: 479 TKESVSVLNLFTRIR 493
Database: RefSeqSP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 434,620
Number of sequences in database: 1040
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,334,823
Number of Sequences: 1040
Number of extensions: 59282
Number of successful extensions: 256
Number of sequences better than 1.0e-05: 3
Number of HSP's better than 0.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 434,620
effective HSP length: 85
effective length of database: 346,220
effective search space used: 272475140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PBL01_0074_B12
(2620 letters)
Database: RefSeqMP
45,328 sequences; 21,768,885 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_536353.2| F-box and WD-40 domain protein 7, archipelago h... 1090 0.0
Alignment gi|NP_598776.1| F-box and WD-40 domain protein 11 [Mus musculus] 241 2e-63
Alignment gi|NP_033901.1| beta-transducin repeat containing protein isofo... 236 7e-62
Alignment gi|NP_001032847.1| beta-transducin repeat containing protein is... 236 7e-62
Alignment gi|NP_543124.1| WD repeat domain 5 [Mus musculus] 168 2e-41
Alignment gi|NP_038653.1| platelet-activating factor acetylhydrolase, iso... 162 2e-39
Alignment gi|NP_081389.1| WD repeat domain 5B [Mus musculus] 158 2e-38
Alignment gi|XP_987745.1| PREDICTED: similar to platelet-activating facto... 150 9e-36
Alignment gi|NP_722487.1| Tnf receptor-associated factor 7 [Mus musculus] 135 2e-31
Alignment gi|NP_081630.1| WD repeat domain 51A [Mus musculus] 132 2e-30
>ref|NP_536353.2| F-box and WD-40 domain protein 7, archipelago homolog [Mus musculus]
Length = 629
Score = 1090 bits (2819), Expect = 0.0
Identities = 527/541 (97%), Positives = 531/541 (98%)
Frame = +2
Query: 899 KMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAANXXXXXXXXIT 1078
KMKRKLDHGSEVRSFSLGKKPCKVS+YTSTTGLVPCSATPTTFGDLRAAN IT
Sbjct: 89 KMKRKLDHGSEVRSFSLGKKPCKVSDYTSTTGLVPCSATPTTFGDLRAANGQGQQRRRIT 148
Query: 1079 SVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPK 1258
SVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVI PQFQRDFISLLPK
Sbjct: 149 SVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIEPQFQRDFISLLPK 208
Query: 1259 ELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGF 1438
ELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRK+IKPGF
Sbjct: 209 ELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKIIKPGF 268
Query: 1439 IHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVW 1618
IHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVW
Sbjct: 269 IHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVW 328
Query: 1619 SAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLRVWNAETGECIHTLYGHTSTVRC 1798
SAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTL+VWNAETGECIHTLYGHTSTVRC
Sbjct: 329 SAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRC 388
Query: 1799 MHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVW 1978
MHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVW
Sbjct: 389 MHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVW 448
Query: 1979 DPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG 2158
DPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG
Sbjct: 449 DPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG 508
Query: 2159 MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV 2338
MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGP+KHQSAVTCLQFNKNFVITSSDDGTV
Sbjct: 509 MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPSKHQSAVTCLQFNKNFVITSSDDGTV 568
Query: 2339 KLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEEAKLLVLDFDVDM 2518
KLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEE KLLVLDFDVDM
Sbjct: 569 KLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVDM 628
Query: 2519 K 2521
K
Sbjct: 629 K 629
>ref|NP_598776.1| F-box and WD-40 domain protein 11 [Mus musculus]
Length = 563
Score = 241 bits (616), Expect = 2e-63
Identities = 140/445 (31%), Positives = 230/445 (51%), Gaps = 32/445 (7%)
Frame = +2
Query: 1112 LKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPKE----LALYVL 1279
+K F WS +++ ++ LI Q H+ + P QRDFI+ LP++ +A +L
Sbjct: 98 IKYFDQWSESDQVEFVEHLISRMCHYQHGHINSYLKPMLQRDFITALPEQGLDHIAENIL 157
Query: 1280 SFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLH-------------IKRRK 1420
S+L+ + L A C+ W+ + + +LW++ + +PL K R
Sbjct: 158 SYLDARSLCAAELVCKEWQRVISEGMLWKKLIERMVRTDPLWKGLSERRGWDQYLFKNRP 217
Query: 1421 VIKP--GFIHSPWKSAYIRQHRIDTNWRRGELKSPKV-LKGHDDHVITCLQFCGNRIVSG 1591
P F S + I++NWR G ++ + + + CLQ+ ++I+SG
Sbjct: 218 TDGPPNSFYRSLYPKIIQDIETIESNWRCGRHNLQRIQCRSENSKGVYCLQYDDDKIISG 277
Query: 1592 SDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLRVWNAETGECIHTL 1771
DN++K+W + +CL+ L GHTG V Q + +I++GS+D T+RVW+ TGE ++TL
Sbjct: 278 LRDNSIKIWDKSSLECLKVLTGHTGSVLCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTL 337
Query: 1772 YGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCL---HVLMGHVAAVRCVQYDGRRV 1942
H V + +V+ S+D ++ VWD+ + + VL+GH AAV V +D + +
Sbjct: 338 IHHNEAVLHLRFSNGLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYI 397
Query: 1943 VSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCI 2122
VS + D +KVW T + TL GH + LQ+ VVSGS D +IR+WD+E G C+
Sbjct: 398 VSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACL 457
Query: 2123 HTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTG---------QCLQTLQGPNKHQS 2275
L GH+ L + + +VSG D +K+WD++ CL+TL +H
Sbjct: 458 RVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLV---EHSG 514
Query: 2276 AVTCLQFNKNFVITSSDDGTVKLWD 2350
V LQF++ +I+SS D T+ +WD
Sbjct: 515 RVFRLQFDEFQIISSSHDDTILIWD 539
Score = 68.9 bits (167), Expect = 2e-11
Identities = 28/75 (37%), Positives = 50/75 (66%)
Frame = +2
Query: 2159 MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV 2338
++ D+ ++SG D+++KIWD + +CL+ L G H +V CLQ+++ ++T S D TV
Sbjct: 267 LQYDDDKIISGLRDNSIKIWDKSSLECLKVLTG---HTGSVLCLQYDERVIVTGSSDSTV 323
Query: 2339 KLWDLKTGEFIRNLV 2383
++WD+ TGE + L+
Sbjct: 324 RVWDVNTGEVLNTLI 338
>ref|NP_033901.1| beta-transducin repeat containing protein isoform b [Mus musculus]
Length = 569
Score = 236 bits (603), Expect = 7e-62
Identities = 145/447 (32%), Positives = 229/447 (51%), Gaps = 34/447 (7%)
Frame = +2
Query: 1112 LKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPKE----LALYVL 1279
+K F+ WS +++ ++ LI Q H+ + P QRDFI+ LP +A +L
Sbjct: 102 VKYFEQWSESDQVEFVEHLISQMCHYQHGHINSYLKPMLQRDFITALPARGLDHIAENIL 161
Query: 1280 SFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLH---IKRRK------VIKP 1432
S+L+ K L A C+ W + D +LW++ + + L +RR KP
Sbjct: 162 SYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKP 221
Query: 1433 GFIHSPWKSAYIRQH--------RIDTNWRRGELKSPKV-LKGHDDHVITCLQFCGNRIV 1585
++P S Y + I++NWR G ++ + + CLQ+ +IV
Sbjct: 222 PDENAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIV 281
Query: 1586 SGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLRVWNAETGECIH 1765
SG DNT+K+W T +C R L GHTG V Q + +II+GS+D T+RVW+ GE ++
Sbjct: 282 SGLRDNTIKIWDKSTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNAGEMLN 341
Query: 1766 TLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCL---HVLMGHVAAVRCVQYDGR 1936
TL H V + + +V+ S+D ++ VWD+ + + VL+GH AAV V +D +
Sbjct: 342 TLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK 401
Query: 1937 RVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGN 2116
+VS + D +KVW+ T + TL GH + LQ+ VVSGS D +IR+WD+E G
Sbjct: 402 YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGA 461
Query: 2117 CIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTG---------QCLQTLQGPNKH 2269
C+ L GH+ L + + +VSG D +K+WD+ CL+TL +H
Sbjct: 462 CLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLMAALDPRAPAGTLCLRTLV---EH 518
Query: 2270 QSAVTCLQFNKNFVITSSDDGTVKLWD 2350
V LQF++ +++SS D T+ +WD
Sbjct: 519 SGRVFRLQFDEFQIVSSSHDDTILIWD 545
Score = 152 bits (383), Expect = 2e-36
Identities = 85/260 (32%), Positives = 140/260 (53%), Gaps = 3/260 (1%)
Frame = +2
Query: 1760 IHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRR 1939
IH + V C+ ++++VSG RD T+++WD T +C +L GH +V C+QYD R
Sbjct: 260 IHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKSTLECKRILTGHTGSVLCLQYDERV 319
Query: 1940 VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNC 2119
+++G+ D V+VWD L+TL H V L+F+ +V+ S D SI VWD+ +
Sbjct: 320 IITGSSDSTVRVWDVNAGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD 379
Query: 2120 I---HTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCL 2290
I L GH++ + ++ D +VS + D T+K+W+ T + ++TL G H+ + CL
Sbjct: 380 ITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNG---HKRGIACL 436
Query: 2291 QFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRN 2470
Q+ V++ S D T++LWD++ G +R L G +V IR N ++V +
Sbjct: 437 QYRDRLVVSGSSDNTIRLWDIECGACLRVL-----EGHEELVRCIRFDNKRIV------S 485
Query: 2471 GTEEAKLLVLDFDVDMK*RA 2530
G + K+ V D + RA
Sbjct: 486 GAYDGKIKVWDLMAALDPRA 505
Score = 122 bits (305), Expect = 2e-27
Identities = 62/171 (36%), Positives = 94/171 (54%), Gaps = 9/171 (5%)
Frame = +2
Query: 1520 KVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNI 1699
+VL GH + + F IVS S D T+KVW+ T + +RTL GH G+ Q RD +
Sbjct: 384 RVLVGHRA-AVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRL 442
Query: 1700 IISGSTDRTLRVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQ- 1876
++SGS+D T+R+W+ E G C+ L GH VRC+ KR+VSG+ D ++VWD+
Sbjct: 443 VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLMAALD 502
Query: 1877 --------CLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLH 2005
CL L+ H V +Q+D ++VS ++D + +WD + H
Sbjct: 503 PRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDPAAH 553
>ref|NP_001032847.1| beta-transducin repeat containing protein isoform a [Mus musculus]
Length = 605
Score = 236 bits (603), Expect = 7e-62
Identities = 145/447 (32%), Positives = 229/447 (51%), Gaps = 34/447 (7%)
Frame = +2
Query: 1112 LKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIAPQFQRDFISLLPKE----LALYVL 1279
+K F+ WS +++ ++ LI Q H+ + P QRDFI+ LP +A +L
Sbjct: 138 VKYFEQWSESDQVEFVEHLISQMCHYQHGHINSYLKPMLQRDFITALPARGLDHIAENIL 197
Query: 1280 SFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLH---IKRRK------VIKP 1432
S+L+ K L A C+ W + D +LW++ + + L +RR KP
Sbjct: 198 SYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKP 257
Query: 1433 GFIHSPWKSAYIRQH--------RIDTNWRRGELKSPKV-LKGHDDHVITCLQFCGNRIV 1585
++P S Y + I++NWR G ++ + + CLQ+ +IV
Sbjct: 258 PDENAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIRCRSETSKGVYCLQYDDQKIV 317
Query: 1586 SGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLRVWNAETGECIH 1765
SG DNT+K+W T +C R L GHTG V Q + +II+GS+D T+RVW+ GE ++
Sbjct: 318 SGLRDNTIKIWDKSTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNAGEMLN 377
Query: 1766 TLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCL---HVLMGHVAAVRCVQYDGR 1936
TL H V + + +V+ S+D ++ VWD+ + + VL+GH AAV V +D +
Sbjct: 378 TLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK 437
Query: 1937 RVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGN 2116
+VS + D +KVW+ T + TL GH + LQ+ VVSGS D +IR+WD+E G
Sbjct: 438 YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGA 497
Query: 2117 CIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTG---------QCLQTLQGPNKH 2269
C+ L GH+ L + + +VSG D +K+WD+ CL+TL +H
Sbjct: 498 CLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLMAALDPRAPAGTLCLRTLV---EH 554
Query: 2270 QSAVTCLQFNKNFVITSSDDGTVKLWD 2350
V LQF++ +++SS D T+ +WD
Sbjct: 555 SGRVFRLQFDEFQIVSSSHDDTILIWD 581
Score = 151 bits (381), Expect = 4e-36
Identities = 83/250 (33%), Positives = 137/250 (54%), Gaps = 3/250 (1%)
Frame = +2
Query: 1790 VRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMV 1969
V C+ ++++VSG RD T+++WD T +C +L GH +V C+QYD R +++G+ D V
Sbjct: 306 VYCLQYDDQKIVSGLRDNTIKIWDKSTLECKRILTGHTGSVLCLQYDERVIITGSSDSTV 365
Query: 1970 KVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCI---HTLTGH 2140
+VWD L+TL H V L+F+ +V+ S D SI VWD+ + I L GH
Sbjct: 366 RVWDVNAGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGH 425
Query: 2141 QSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITS 2320
++ + ++ D +VS + D T+K+W+ T + ++TL G H+ + CLQ+ V++
Sbjct: 426 RAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNG---HKRGIACLQYRDRLVVSG 482
Query: 2321 SDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEEAKLLVL 2500
S D T++LWD++ G +R L G +V IR N ++V +G + K+ V
Sbjct: 483 SSDNTIRLWDIECGACLRVL-----EGHEELVRCIRFDNKRIV------SGAYDGKIKVW 531
Query: 2501 DFDVDMK*RA 2530
D + RA
Sbjct: 532 DLMAALDPRA 541
Score = 122 bits (305), Expect = 2e-27
Identities = 62/171 (36%), Positives = 94/171 (54%), Gaps = 9/171 (5%)
Frame = +2
Query: 1520 KVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNI 1699
+VL GH + + F IVS S D T+KVW+ T + +RTL GH G+ Q RD +
Sbjct: 420 RVLVGHRA-AVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRL 478
Query: 1700 IISGSTDRTLRVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQ- 1876
++SGS+D T+R+W+ E G C+ L GH VRC+ KR+VSG+ D ++VWD+
Sbjct: 479 VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLMAALD 538
Query: 1877 --------CLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLH 2005
CL L+ H V +Q+D ++VS ++D + +WD + H
Sbjct: 539 PRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDPAAH 589
>ref|NP_543124.1| WD repeat domain 5 [Mus musculus]
Length = 334
Score = 168 bits (426), Expect = 2e-41
Identities = 97/284 (34%), Positives = 162/284 (57%), Gaps = 25/284 (8%)
Frame = +2
Query: 1571 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV----WSSQMRDNIIISGSTDRTLRVW 1738
G + S S D +K+W A GK +T+ GH G+ WSS N+++S S D+TL++W
Sbjct: 57 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD--SNLLVSASDDKTLKIW 114
Query: 1739 NAETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDIETGQCLHVLMGHVAAV 1912
+ +G+C+ TL GH++ V C + + + +VSGS D ++R+WD++TG+CL L H V
Sbjct: 115 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 174
Query: 1913 RCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS-LQF--DGIHVVSGSL 2077
V + DG +VS +YD + ++WD + CL TL N S ++F +G ++++ +L
Sbjct: 175 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 234
Query: 2078 DTSIRVWDVETGNCIHTLTGHQ----------SLTSGMELKDNILVSGNADSTVKIWDIK 2227
D ++++WD G C+ T TGH+ S+T G +VSG+ D+ V IW+++
Sbjct: 235 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG-----KWIVSGSEDNLVYIWNLQ 289
Query: 2228 TGQCLQTLQGPNKHQSAV--TCLQFNKNFVITSS--DDGTVKLW 2347
T + +Q LQG H V T +N + +++ +D T+KLW
Sbjct: 290 TKEIVQKLQG---HTDVVISTACHPTENIIASAALENDKTIKLW 330
Score = 144 bits (363), Expect = 5e-34
Identities = 84/259 (32%), Positives = 135/259 (52%), Gaps = 17/259 (6%)
Frame = +2
Query: 1493 WRRGELKSPKVLKGHDDHVI-TCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 1669
W + K K + GH + N +VS SDD TLK+W +GKCL+TL GH+
Sbjct: 72 WGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY 131
Query: 1670 VWSSQM--RDNIIISGSTDRTLRVWNAETGECIHTLYGHTSTVRCMHLHE--KRVVSGSR 1837
V+ + N+I+SGS D ++R+W+ +TG+C+ TL H+ V +H + +VS S
Sbjct: 132 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 191
Query: 1838 DATLRVWDIETGQCLHVLM-GHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHT 2008
D R+WD +GQCL L+ V V++ +G+ +++ D +K+WD CL T
Sbjct: 192 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 251
Query: 2009 LQGHTNRVYSLQFD-----GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--LTSGMEL 2167
GH N Y + + G +VSGS D + +W+++T + L GH +++
Sbjct: 252 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 311
Query: 2168 KDNILVSG--NADSTVKIW 2218
+NI+ S D T+K+W
Sbjct: 312 TENIIASAALENDKTIKLW 330
Score = 144 bits (362), Expect = 6e-34
Identities = 84/261 (32%), Positives = 141/261 (54%), Gaps = 16/261 (6%)
Frame = +2
Query: 1646 TLVGHTGGVWSSQMRDN--IIISGSTDRTLRVWNAETGECIHTLYGHTSTVR--CMHLHE 1813
TL GHT V S + N + S S D+ +++W A G+ T+ GH +
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99
Query: 1814 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRR--VVSGAYDFMVKVWDPE 1987
+VS S D TL++WD+ +G+CL L GH V C ++ + +VSG++D V++WD +
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 159
Query: 1988 TETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSL-TSG 2158
T CL TL H++ V ++ F DG +VS S D R+WD +G C+ TL + S
Sbjct: 160 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 219
Query: 2159 MELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN-----FVIT 2317
++ N +++ D+T+K+WD G+CL+T G H++ C+ N + ++++
Sbjct: 220 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG---HKNEKYCIFANFSVTGGKWIVS 276
Query: 2318 SSDDGTVKLWDLKTGEFIRNL 2380
S+D V +W+L+T E ++ L
Sbjct: 277 GSEDNLVYIWNLQTKEIVQKL 297
Score = 107 bits (267), Expect = 6e-23
Identities = 56/173 (32%), Positives = 99/173 (57%), Gaps = 8/173 (4%)
Frame = +2
Query: 1889 LMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGI 2056
L GH AV V++ +G + S + D ++K+W T+ GH + + + D
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 100
Query: 2057 HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT--SGMELKDNILVSGNADSTVKIWDIKT 2230
+VS S D ++++WDV +G C+ TL GH + + N++VSG+ D +V+IWD+KT
Sbjct: 101 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 160
Query: 2231 GQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKLWDLKTGEFIRNLV 2383
G+CL+TL H V+ + FN+ + +++SS DG ++WD +G+ ++ L+
Sbjct: 161 GKCLKTLPA---HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 210
>ref|NP_038653.1| platelet-activating factor acetylhydrolase, isoform 1b, beta1 subunit
[Mus musculus]
Length = 410
Score = 162 bits (409), Expect = 2e-39
Identities = 98/291 (33%), Positives = 153/291 (52%), Gaps = 32/291 (10%)
Frame = +2
Query: 1580 IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW--SSQMRDNIIISGSTDRTLRVWNAETG 1753
+VS S+D T+KVW TG RTL GHT V S ++ S S D T+++W+ +
Sbjct: 123 MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF 182
Query: 1754 ECIHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQ- 1924
ECI T++GH V + + + +VS SRD T+++W+++TG C+ GH VR V+
Sbjct: 183 ECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRP 242
Query: 1925 -YDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF------------------ 2047
DG + S + D V+VW T+ C L+ H + V + +
Sbjct: 243 NQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETK 302
Query: 2048 ----DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTV 2209
G ++SGS D +I++WDV TG C+ TL GH + G+ ++S D T+
Sbjct: 303 KSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTL 362
Query: 2210 KIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDLK 2356
++WD K +C++TL N H+ VT L F+K +V+T S D TVK+W+ +
Sbjct: 363 RVWDYKNKRCMKTL---NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 135 bits (341), Expect = 2e-31
Identities = 83/267 (31%), Positives = 130/267 (48%), Gaps = 31/267 (11%)
Frame = +2
Query: 1520 KVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN 1696
+ LKGH D V G + S S D T+K+W +C+RT+ GH V S + N
Sbjct: 144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPN 203
Query: 1697 --IIISGSTDRTLRVWNAETGECIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDI 1864
I+S S D+T+++W +TG C+ T GH VR + ++ + S S D T+RVW +
Sbjct: 204 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 263
Query: 1865 ETGQCLHVLMGHVAAVRCVQY----------------------DGRRVVSGAYDFMVKVW 1978
T +C L H V C+ + G ++SG+ D +K+W
Sbjct: 264 ATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW 323
Query: 1979 DPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT 2152
D T CL TL GH N V + F G ++S + D ++RVWD + C+ TL H+
Sbjct: 324 DVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFV 383
Query: 2153 SGMELKDN--ILVSGNADSTVKIWDIK 2227
+ ++ +V+G+ D TVK+W+ +
Sbjct: 384 TSLDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 132 bits (333), Expect = 1e-30
Identities = 82/260 (31%), Positives = 136/260 (52%), Gaps = 31/260 (11%)
Frame = +2
Query: 1694 NIIISGSTDRTLRVWNAETGECIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIE 1867
++++S S D T++VW+ ETG+ TL GHT +V+ + K + S S D T+++WD +
Sbjct: 121 SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180
Query: 1868 TGQCLHVLMGH---VAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTN--RV 2032
+C+ + GH V++V + +G +VS + D +K+W+ +T C+ T GH R+
Sbjct: 181 GFECIRTMHGHDHNVSSV-AIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRM 239
Query: 2033 YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ-----------------SLTSGM 2161
DG + S S D ++RVW V T C L H+ S +G
Sbjct: 240 VRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGS 299
Query: 2162 ELKDN-----ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITS 2320
E K + L+SG+ D T+K+WD+ TG CL TL G H + V + F+ F+++
Sbjct: 300 ETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG---HDNWVRGVLFHSGGKFILSC 356
Query: 2321 SDDGTVKLWDLKTGEFIRNL 2380
+DD T+++WD K ++ L
Sbjct: 357 ADDKTLRVWDYKNKRCMKTL 376
Score = 125 bits (315), Expect = 2e-28
Identities = 73/237 (30%), Positives = 122/237 (51%), Gaps = 30/237 (12%)
Frame = +2
Query: 1763 HTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD-- 1930
+ L GH S V + H +VS S DAT++VWD ETG L GH +V+ + +D
Sbjct: 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 161
Query: 1931 GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDV 2104
G+ + S + D +K+WD + C+ T+ GH + V S+ +G H+VS S D +I++W+V
Sbjct: 162 GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEV 221
Query: 2105 ETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSA 2278
+TG C+ T TGH+ + + ++ S + D TV++W + T +C L+ +H+
Sbjct: 222 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR---EHEHV 278
Query: 2279 VTCLQFNKN----------------------FVITSSDDGTVKLWDLKTGEFIRNLV 2383
V C+ + F+++ S D T+K+WD+ TG + LV
Sbjct: 279 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV 335
>ref|NP_081389.1| WD repeat domain 5B [Mus musculus]
Length = 328
Score = 158 bits (400), Expect = 2e-38
Identities = 92/294 (31%), Positives = 165/294 (56%), Gaps = 20/294 (6%)
Frame = +2
Query: 1526 LKGHDDHVITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV----WSSQM 1687
L GH I+ ++F G + S + D + +W A G C +TL GH+ + WSS
Sbjct: 35 LAGHSA-AISSVKFSPNGEWLASSAADALIIIWGAYDGNCKKTLYGHSLEISDVAWSSD- 92
Query: 1688 RDNIIISGSTDRTLRVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWD 1861
+ ++S S D+TL+VW+ +G+C+ TL GH+ V C + +VSGS D ++++W+
Sbjct: 93 -SSRLVSASDDKTLKVWDMRSGKCLKTLKGHSDFVFCCDFNPPSNLIVSGSFDESVKIWE 151
Query: 1862 IETGQCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY 2035
++TG+CL L H + V ++ G +VSG+YD + ++WD + CL TL N
Sbjct: 152 VKTGKCLKTLSAHSDPISAVNFNCNGSLIVSGSYDGLCRIWDAASGQCLRTLADEGNPPV 211
Query: 2036 S-LQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNI-----LVSG 2191
S ++F +G ++++ +LD ++++WD G C+ T TGH++ + ++ +VSG
Sbjct: 212 SFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKYCLFASFSVTGRKWVVSG 271
Query: 2192 NADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSS--DDGTVKLW 2347
+ D+ V IW+++T + +Q LQG + C KN + +++ +D T+K+W
Sbjct: 272 SEDNMVYIWNLQTKEIVQRLQGHTDVVISAAC-HPTKNIIASAALENDKTIKVW 324
Score = 151 bits (381), Expect = 4e-36
Identities = 86/261 (32%), Positives = 141/261 (54%), Gaps = 16/261 (6%)
Frame = +2
Query: 1646 TLVGHTGGVWSSQMRDN--IIISGSTDRTLRVWNAETGECIHTLYGHTSTVR--CMHLHE 1813
TL GH+ + S + N + S + D + +W A G C TLYGH+ +
Sbjct: 34 TLAGHSAAISSVKFSPNGEWLASSAADALIIIWGAYDGNCKKTLYGHSLEISDVAWSSDS 93
Query: 1814 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDPE 1987
R+VS S D TL+VWD+ +G+CL L GH V C ++ +VSG++D VK+W+ +
Sbjct: 94 SRLVSASDDKTLKVWDMRSGKCLKTLKGHSDFVFCCDFNPPSNLIVSGSFDESVKIWEVK 153
Query: 1988 TETCLHTLQGHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSL-TSG 2158
T CL TL H++ + ++ F+ G +VSGS D R+WD +G C+ TL + S
Sbjct: 154 TGKCLKTLSAHSDPISAVNFNCNGSLIVSGSYDGLCRIWDAASGQCLRTLADEGNPPVSF 213
Query: 2159 MELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCL-----QFNKNFVIT 2317
++ N +++ D+T+K+WD G+CL+T G H++ CL + +V++
Sbjct: 214 VKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTG---HKNEKYCLFASFSVTGRKWVVS 270
Query: 2318 SSDDGTVKLWDLKTGEFIRNL 2380
S+D V +W+L+T E ++ L
Sbjct: 271 GSEDNMVYIWNLQTKEIVQRL 291
Score = 117 bits (294), Expect = 5e-26
Identities = 77/218 (35%), Positives = 112/218 (51%), Gaps = 16/218 (7%)
Frame = +2
Query: 1493 WRRGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 1669
W K K LKGH D V C N IVSGS D ++K+W TGKCL+TL H+
Sbjct: 108 WDMRSGKCLKTLKGHSDFVFCCDFNPPSNLIVSGSFDESVKIWEVKTGKCLKTLSAHSDP 167
Query: 1670 VWSSQMRDN--IIISGSTDRTLRVWNAETGECIHTLYGH----TSTVRCMHLHEKRVVSG 1831
+ + N +I+SGS D R+W+A +G+C+ TL S V+ + K +++
Sbjct: 168 ISAVNFNCNGSLIVSGSYDGLCRIWDAASGQCLRTLADEGNPPVSFVK-FSPNGKYILTA 226
Query: 1832 SRDATLRVWDIETGQCLHVLMGHVAAVRCV----QYDGRR-VVSGAYDFMVKVWDPETET 1996
+ D TL++WD G+CL GH C+ GR+ VVSG+ D MV +W+ +T+
Sbjct: 227 TLDNTLKLWDYSRGRCLKTYTGHKNEKYCLFASFSVTGRKWVVSGSEDNMVYIWNLQTKE 286
Query: 1997 CLHTLQGHTNRVYSLQFDGIHVVSGSL----DTSIRVW 2098
+ LQGHT+ V S + S D +I+VW
Sbjct: 287 IVQRLQGHTDVVISAACHPTKNIIASAALENDKTIKVW 324
Score = 79.7 bits (195), Expect = 1e-14
Identities = 51/178 (28%), Positives = 81/178 (45%), Gaps = 13/178 (7%)
Frame = +2
Query: 1493 WRRGELKSPKVLKGHDDHVITCLQFC-GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 1669
W K K L H D + C G+ IVSGS D ++W A +G+CLRTL
Sbjct: 150 WEVKTGKCLKTLSAHSDPISAVNFNCNGSLIVSGSYDGLCRIWDAASGQCLRTLADEGNP 209
Query: 1670 VWS---SQMRDNIIISGSTDRTLRVWNAETGECIHTLYGHTSTVRCMHLH-----EKRVV 1825
S I++ + D TL++W+ G C+ T GH + C+ K VV
Sbjct: 210 PVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKYCLFASFSVTGRKWVV 269
Query: 1826 SGSRDATLRVWDIETGQCLHVLMGHV-AAVRCVQYDGRRVVSGA---YDFMVKVWDPE 1987
SGS D + +W+++T + + L GH + + + +++ A D +KVW +
Sbjct: 270 SGSEDNMVYIWNLQTKEIVQRLQGHTDVVISAACHPTKNIIASAALENDKTIKVWSSD 327
>ref|XP_987745.1| PREDICTED: similar to platelet-activating factor acetylhydrolase beta
subunit [Mus musculus]
Length = 312
Score = 150 bits (378), Expect = 9e-36
Identities = 92/280 (32%), Positives = 144/280 (51%), Gaps = 32/280 (11%)
Frame = +2
Query: 1613 VWSAVTGKCLRTLVGHTGGVW--SSQMRDNIIISGSTDRTLRVWNAETGECIHTLYGHTS 1786
VW TG RTL GHT V S ++ S S D T+++W+ + ECI T++GH
Sbjct: 36 VWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDH 95
Query: 1787 TVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQ--YDGRRVVSGA 1954
V + + + +VS SRD T+++W+++TG C+ GH VR V+ DG + S +
Sbjct: 96 NVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCS 155
Query: 1955 YDFMVKVWDPETETCLHTLQGHTNRVYSLQF----------------------DGIHVVS 2068
D V+VW T+ C L+ H + V + + G ++S
Sbjct: 156 NDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS 215
Query: 2069 GSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCL 2242
GS D +I++WDV TG C+ TL GH + G+ ++S D T+++WD K +C+
Sbjct: 216 GSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM 275
Query: 2243 QTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDLK 2356
+TL N H+ VT L F+K +V+T S D TVK+W+ +
Sbjct: 276 KTL---NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 312
Score = 135 bits (341), Expect = 2e-31
Identities = 83/267 (31%), Positives = 130/267 (48%), Gaps = 31/267 (11%)
Frame = +2
Query: 1520 KVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN 1696
+ LKGH D V G + S S D T+K+W +C+RT+ GH V S + N
Sbjct: 46 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPN 105
Query: 1697 --IIISGSTDRTLRVWNAETGECIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDI 1864
I+S S D+T+++W +TG C+ T GH VR + ++ + S S D T+RVW +
Sbjct: 106 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 165
Query: 1865 ETGQCLHVLMGHVAAVRCVQY----------------------DGRRVVSGAYDFMVKVW 1978
T +C L H V C+ + G ++SG+ D +K+W
Sbjct: 166 ATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW 225
Query: 1979 DPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT 2152
D T CL TL GH N V + F G ++S + D ++RVWD + C+ TL H+
Sbjct: 226 DVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFV 285
Query: 2153 SGMELKDN--ILVSGNADSTVKIWDIK 2227
+ ++ +V+G+ D TVK+W+ +
Sbjct: 286 TSLDFHKTAPYVVTGSVDQTVKVWECR 312
Score = 121 bits (304), Expect = 3e-27
Identities = 78/246 (31%), Positives = 123/246 (50%), Gaps = 30/246 (12%)
Frame = +2
Query: 1733 VWNAETGECIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQCLHVLMGHVA 1906
VW+ ETG+ TL GHT +V+ + K + S S D T+++WD + +C+ + GH
Sbjct: 36 VWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDH 95
Query: 1907 AVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTN--RVYSLQFDGIHVVSGS 2074
V V +G +VS + D +K+W+ +T C+ T GH R+ DG + S S
Sbjct: 96 NVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCS 155
Query: 2075 LDTSIRVWDVETGNCIHTLTGHQ-----------------SLTSGMELKDN-----ILVS 2188
D ++RVW V T C L H+ S +G E K + L+S
Sbjct: 156 NDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS 215
Query: 2189 GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDLKTG 2362
G+ D T+K+WD+ TG CL TL G H + V + F+ F+++ +DD T+++WD K
Sbjct: 216 GSRDKTIKMWDVSTGMCLMTLVG---HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK 272
Query: 2363 EFIRNL 2380
++ L
Sbjct: 273 RCMKTL 278
Score = 110 bits (274), Expect = 1e-23
Identities = 61/205 (29%), Positives = 105/205 (51%), Gaps = 28/205 (13%)
Frame = +2
Query: 1853 VWDIETGQCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDPETETCLHTLQGHTN 2026
VWD ETG L GH +V+ + +D G+ + S + D +K+WD + C+ T+ GH +
Sbjct: 36 VWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDH 95
Query: 2027 RVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVSGN 2194
V S+ +G H+VS S D +I++W+V+TG C+ T TGH+ + + ++ S +
Sbjct: 96 NVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCS 155
Query: 2195 ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN----------------------F 2308
D TV++W + T +C L+ +H+ V C+ + F
Sbjct: 156 NDQTVRVWVVATKECKAELR---EHEHVVECISWAPESSYSSISEATGSETKKSGKPGPF 212
Query: 2309 VITSSDDGTVKLWDLKTGEFIRNLV 2383
+++ S D T+K+WD+ TG + LV
Sbjct: 213 LLSGSRDKTIKMWDVSTGMCLMTLV 237
>ref|NP_722487.1| Tnf receptor-associated factor 7 [Mus musculus]
Length = 594
Score = 135 bits (340), Expect = 2e-31
Identities = 90/281 (32%), Positives = 143/281 (50%), Gaps = 9/281 (3%)
Frame = +2
Query: 1532 GHDDHV-ITCLQFCGNRIVSGSDDNTLKVW-SAVTGKCLRTLVGHTGGVWSSQMRDNIII 1705
GH V C+ G+ + SGS D T+KVW + T KC +TL GH G V + ++ +
Sbjct: 318 GHQGPVWCLCVYSMGDLLFSGSSDKTIKVWDTCTTYKCQKTLEGHDGIVLALCIQGCKLY 377
Query: 1706 SGSTDRTLRVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLH 1885
SGS D T+ VW+ + + ++T+ H + V + + SGS A ++VWDI G L
Sbjct: 378 SGSADCTIIVWDIQNLQKVNTIRAHDNPVCTLVSSHNMLFSGSLKA-IKVWDI-VGTELK 435
Query: 1886 V---LMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI 2056
+ L G VR + + SG+Y +K+WD T C+H LQ VYS+
Sbjct: 436 LKKELTGLNHWVRALVAAQSYLYSGSYQ-TIKIWDIRTLDCIHVLQTSGGSVYSIAVTNH 494
Query: 2057 HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL----KDNILVSGNADSTVKIWDI 2224
H+V G+ + I VWD+E+ + TLTGH + + + S + D ++++W +
Sbjct: 495 HIVCGTYENLIHVWDIESKEQVRTLTGHVGTVYALAVISTPDQTKVFSASYDRSLRVWSM 554
Query: 2225 KTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 2347
C QTL +HQ +VT L ++ + + + D TVK+W
Sbjct: 555 DNMICTQTLL---RHQGSVTALAVSRGRLFSGAVDSTVKVW 592
Score = 88.2 bits (217), Expect = 4e-17
Identities = 68/217 (31%), Positives = 103/217 (47%), Gaps = 5/217 (2%)
Frame = +2
Query: 1874 QCLHVLMGHVAAV--RCVQYDGRRVVSGAYDFMVKVWDP-ETETCLHTLQGHTNRVYSLQ 2044
+C +GH V CV G + SG+ D +KVWD T C TL+GH V +L
Sbjct: 311 KCKGTFVGHQGPVWCLCVYSMGDLLFSGSSDKTIKVWDTCTTYKCQKTLEGHDGIVLALC 370
Query: 2045 FDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDI 2224
G + SGS D +I VWD++ ++T+ H + + N+L SG+ + +K+WDI
Sbjct: 371 IQGCKLYSGSADCTIIVWDIQNLQKVNTIRAHDNPVCTLVSSHNMLFSGSLKA-IKVWDI 429
Query: 2225 KTGQCL--QTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESG 2398
+ + L G N A+ Q + S T+K+WD++T + I L T
Sbjct: 430 VGTELKLKKELTGLNHWVRALVAAQS----YLYSGSYQTIKIWDIRTLDCIHVLQT---- 481
Query: 2399 GSGGVVWRIRASNTKLVCAVGSRNGTEEAKLLVLDFD 2509
SGG V+ I +N +VC GT E + V D +
Sbjct: 482 -SGGSVYSIAVTNHHIVC------GTYENLIHVWDIE 511
>ref|NP_081630.1| WD repeat domain 51A [Mus musculus]
Length = 405
Score = 132 bits (331), Expect = 2e-30
Identities = 85/287 (29%), Positives = 138/287 (48%), Gaps = 14/287 (4%)
Frame = +2
Query: 1529 KGHDDHVITCLQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN-- 1696
KGH D +TC+ F N + SGS D+TL +W + GH V +
Sbjct: 16 KGHRD-AVTCVDFSLNTKHLASGSMDSTLMIWHMKSQSRAYRFTGHKDAVTCVNFSPSGH 74
Query: 1697 IIISGSTDRTLRVWNAETGECIHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIET 1870
++ SGS D+T+R+W HT+TVR +H + +V+ S D T++VW
Sbjct: 75 LLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSLVTASDDKTVKVWSTHR 134
Query: 1871 GQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ 2044
+ L L H+ VRC ++ DGR +VS + D VK+WD + C+H+ H V +
Sbjct: 135 QRFLFSLTQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECIHSYCEHGGFVTYVD 194
Query: 2045 F--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVK 2212
F G + + +D +++VWD T + H + + + N L++ ++DST+K
Sbjct: 195 FHPSGTCIAAAGMDNTVKVWDARTHRLLQHYQLHSAAVNALSFHPSGNYLITASSDSTLK 254
Query: 2213 IWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKLW 2347
I D+ G+ L TL G HQ T + F++ + + D V +W
Sbjct: 255 ILDLMEGRLLYTLHG---HQGPATTVAFSRTGEYFASGGSDEQVMVW 298
Score = 124 bits (312), Expect = 4e-28
Identities = 93/290 (32%), Positives = 141/290 (48%), Gaps = 14/290 (4%)
Frame = +2
Query: 1700 IISGSTDRTLRVWNAETGECIHTLYGHTSTVRCMHLHEK--RVVSGSRDATLRVWDIETG 1873
+ SGS D TL +W+ ++ + GH V C++ + SGSRD T+R+W
Sbjct: 34 LASGSMDSTLMIWHMKSQSRAYRFTGHKDAVTCVNFSPSGHLLASGSRDKTVRIWVPNVK 93
Query: 1874 QCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF 2047
V H A VR V + DG+ +V+ + D VKVW + L +L H N V +F
Sbjct: 94 GESTVFRAHTATVRSVHFCSDGQSLVTASDDKTVKVWSTHRQRFLFSLTQHINWVRCAKF 153
Query: 2048 --DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKI 2215
DG +VS S D ++++WD + CIH+ H + ++ + + D+TVK+
Sbjct: 154 SPDGRLIVSASDDKTVKLWDKTSRECIHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKV 213
Query: 2216 WDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKLWDLKTGEFIRNLVTL 2389
WD +T + LQ Q H +AV L F+ N++IT+S D T+K+ DL G R L TL
Sbjct: 214 WDARTHRLLQHYQ---LHSAAVNALSFHPSGNYLITASSDSTLKILDLMEG---RLLYTL 267
Query: 2390 ESGGSGGVVWRIRASNTKLVCAVGSRNGTEEAKLLVLDFDV----DMK*R 2527
G G + S T A G + E+ + +FD+ DMK R
Sbjct: 268 H--GHQGPATTVAFSRTGEYFASGGSD--EQVMVWKSNFDIVDYGDMKAR 313
Database: RefSeqMP
Posted date: Aug 2, 2006 12:58 AM
Number of letters in database: 21,768,885
Number of sequences in database: 45,328
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 117,303,696
Number of Sequences: 45328
Number of extensions: 3054760
Number of successful extensions: 14393
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 8151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11872
length of database: 21,768,885
effective HSP length: 112
effective length of database: 16,692,149
effective search space used: 12686033240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)