Animal-Genome cDNA SPL01_0024_D06


Search to RefSeqBP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPL01_0024_D06
         (1421 letters)

Database: RefSeqBP 
           33,508 sequences; 16,112,626 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001035571.1| major histocompatibility complex, class II, ...   386   e-107
Alignment   gi|XP_582099.2| PREDICTED: similar to major histocompatibility ...    75   1e-13
Alignment   gi|NP_001012694.1| major histocompatibility complex, class II, ...    75   1e-13
Alignment   gi|NP_001012698.2| major histocompatibility complex, class II, ...    72   8e-13
Alignment   gi|NP_001013618.1| major histocompatibility complex, class II, ...    72   1e-12
Alignment   gi|NP_001029840.2| MHC class II antigen [Bos taurus]                  70   4e-12
Alignment   gi|XP_590228.2| PREDICTED: similar to RT1-149 protein [Bos taurus]    68   2e-11
Alignment   gi|NP_001012697.1| major histocompatibility complex, class II, ...    68   2e-11
Alignment   gi|NP_001012695.1| major histocompatibility complex, class II, ...    66   8e-11
Alignment   gi|XP_878034.1| PREDICTED: similar to HLA class I histocompatib...    65   1e-10

>ref|NP_001035571.1| major histocompatibility complex, class II, DM beta-chain, expressed
            [Bos taurus]
          Length = 262

 Score =  386 bits (991), Expect = e-107
 Identities = 177/241 (73%), Positives = 197/241 (81%)
 Frame = +3

Query: 288  FVAHVESTCLLDDEGTPQDFTYCISFNKDLLTCWDPQETRMVPCEFGALNALATYFSVYL 467
            FVAHVESTC+LDD+G P+DF+YCISFNKDLLTCWDP +  M+P EFG LN LA Y S +L
Sbjct: 21   FVAHVESTCVLDDDGDPKDFSYCISFNKDLLTCWDPLQASMIPREFGVLNGLARYLSQFL 80

Query: 468  NQQEKLLQRLSNGLQNCATHTQPFWKSLTHRTQPPSVQVAKTTPFNTRESVMLACYVWGF 647
            N    L+QRLSNGLQNCA HTQPFW SLTHRT+PP+VQVAKTTPFNTRESVMLACYVWGF
Sbjct: 81   NNNSYLIQRLSNGLQNCAAHTQPFWSSLTHRTRPPTVQVAKTTPFNTRESVMLACYVWGF 140

Query: 648  YPADVIITWRKNGQPVLPHGKAHMITQPNGDWTYQTVSHLATTPSYGDTYTCVVEHIGVP 827
            YPADV ITWR+NGQ VLPHG+A  I QPNGDWTYQTVSHLATTPS+GDTYTCVVEHIG P
Sbjct: 141  YPADVAITWRRNGQEVLPHGRAWRIIQPNGDWTYQTVSHLATTPSFGDTYTCVVEHIGAP 200

Query: 828  EPILQDWTSGLSPVQTVKISVSVATXXXXXXXXXXXXXXCQRSVAPGYIFLPGTTYPEGQ 1007
            E ILQDWT GL P QTVK+SV++ T               +R+ + GYIFLPG+TYPEGQ
Sbjct: 201  ELILQDWTPGLLPAQTVKVSVALVTLVLGLIIFVFGLHSWRRATSSGYIFLPGSTYPEGQ 260

Query: 1008 H 1010
            H
Sbjct: 261  H 261


>ref|XP_582099.2| PREDICTED: similar to major histocompatibility complex, class II,
           DR beta 5 precursor [Bos taurus]
          Length = 255

 Score = 75.5 bits (184), Expect = 1e-13
 Identities = 50/149 (33%), Positives = 71/149 (47%), Gaps = 6/149 (4%)
 Frame = +3

Query: 420 EFGALNALATYFSVYLNQQEKLLQRLSNGLQN-CATHTQPFWKSLTHRTQPPSVQV--AK 590
           EF AL  L    + Y NQQ+  ++++   +   C ++ Q     L  R   P+V V  AK
Sbjct: 64  EFTALTELGRLDAEYWNQQKDFMEQMRAKVDTLCRSNYQGIGSFLRQRRVEPTVTVYPAK 123

Query: 591 TTPFNTRESVMLACYVWGFYPADVIITWRKNGQPVLPHGKAHMITQ---PNGDWTYQTVS 761
           T P       +L C V GFYP  + + W  N        +A +I+     NGDWT+QT+ 
Sbjct: 124 TQPLQHHN--LLVCSVNGFYPGHIEVRWFWNSH----EEEAGVISTGLIQNGDWTFQTMV 177

Query: 762 HLATTPSYGDTYTCVVEHIGVPEPILQDW 848
            L T P  G+ YTC VEH     P+  +W
Sbjct: 178 MLETVPQSGEVYTCQVEHPSRTSPLTVEW 206


>ref|NP_001012694.1| major histocompatibility complex, class II, DQ beta [Bos taurus]
          Length = 261

 Score = 75.1 bits (183), Expect = 1e-13
 Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 6/162 (3%)
 Frame = +3

Query: 420 EFGALNALATYFSVYLNQQEKLLQRLSNGLQNCATHTQPFW--KSLTHRTQPP-SVQVAK 590
           E+ A+  L    + Y N Q+ +L++    L     H        SL  + +P  ++ +++
Sbjct: 78  EYRAVTQLGRTLAEYWNSQKDILEQTRAELDTVCRHNYQLEVITSLQRQVEPTVTISLSR 137

Query: 591 TTPFNTRESVMLACYVWGFYPADVIITWRKNGQPVLPHGKAHMITQP---NGDWTYQTVS 761
           T   N     +L C V  FYP  + + W +NG+       A +++ P   NGDWT+Q + 
Sbjct: 138 TEALNHHN--LLVCSVTDFYPGQIKVRWFQNGK----EETAGIVSTPLIRNGDWTFQILV 191

Query: 762 HLATTPSYGDTYTCVVEHIGVPEPILQDWTSGLSPVQTVKIS 887
            L  TP  GD YTC VEH  +  PI  +W +     Q+  +S
Sbjct: 192 MLEMTPKRGDVYTCHVEHPSLQSPISVEWRAQSESAQSKMLS 233


>ref|NP_001012698.2| major histocompatibility complex, class II, DRB3 [Bos taurus]
          Length = 266

 Score = 72.4 bits (176), Expect = 8e-13
 Identities = 51/162 (31%), Positives = 75/162 (46%), Gaps = 6/162 (3%)
 Frame = +3

Query: 420 EFGALNALATYFSVYLNQQEKLLQRLSNGLQNCATHTQPFWKSLT-HRTQPPSVQV--AK 590
           EF A+  L    + + N Q+  L++    +     H     +S T  R   P+V V  AK
Sbjct: 75  EFRAVTELGRPAAEHWNSQKDFLEQKRAEVDRVCRHNYGGVESFTVQRRVEPTVTVYPAK 134

Query: 591 TTPFNTRESVMLACYVWGFYPADVIITWRKNGQPVLPHGKAHMITQ---PNGDWTYQTVS 761
           T P       +L C V GFYP  + + W +NG       +A +I+     NGDWT+QT+ 
Sbjct: 135 TQPLQHHN--LLVCSVNGFYPGHIEVRWFRNGH----EEEAGVISTGLIQNGDWTFQTMV 188

Query: 762 HLATTPSYGDTYTCVVEHIGVPEPILQDWTSGLSPVQTVKIS 887
            L T P  G+ YTC V+H     PI  +W +     Q+  +S
Sbjct: 189 MLETVPQSGEVYTCQVDHPKRTSPITVEWRARSDSAQSKMMS 230


>ref|NP_001013618.1| major histocompatibility complex, class II, DO beta [Bos taurus]
          Length = 271

 Score = 72.0 bits (175), Expect = 1e-12
 Identities = 36/97 (37%), Positives = 53/97 (54%)
 Frame = +3

Query: 558 RTQPPSVQVAKTTPFNTRESVMLACYVWGFYPADVIITWRKNGQPVLPHGKAHMITQPNG 737
           R QP      + TP     +++L C V GFYP D+ +TW +NGQ       +  + + NG
Sbjct: 120 RVQPEVTVYPEKTPALQHRNLLL-CLVTGFYPGDIKVTWFRNGQEQREGIMSTGLIR-NG 177

Query: 738 DWTYQTVSHLATTPSYGDTYTCVVEHIGVPEPILQDW 848
           DWT+Q    LA TP  G+ YTC+V+H  +  P+  +W
Sbjct: 178 DWTFQMTVMLAMTPELGEVYTCLVDHPSLLSPVSVEW 214


>ref|NP_001029840.2| MHC class II antigen [Bos taurus]
          Length = 261

 Score = 70.1 bits (170), Expect = 4e-12
 Identities = 46/161 (28%), Positives = 73/161 (45%), Gaps = 6/161 (3%)
 Frame = +3

Query: 423 FGALNALATYFSVYLNQQEKLLQRLSNGLQNCATHTQP--FWKSLTHRTQPP-SVQVAKT 593
           + AL  L    + Y N Q+  L++          H        SL  R +P  ++  ++T
Sbjct: 79  YRALTPLGRPDAEYWNSQKDFLEQTRAEADTVCRHNYQAELITSLQRRVEPTVTISPSRT 138

Query: 594 TPFNTRESVMLACYVWGFYPADVIITWRKNGQPVLPHGKAHMITQP---NGDWTYQTVSH 764
              N     +L C V  FYP+ + + W +N +       A +++ P   NGDWT+Q +  
Sbjct: 139 EALNHHN--LLVCSVTDFYPSQIKVRWFRNDR----EETAGVVSTPLIRNGDWTFQILVM 192

Query: 765 LATTPSYGDTYTCVVEHIGVPEPILQDWTSGLSPVQTVKIS 887
           L  TP  GD YTC VEH  +  PI+ +W +     Q+  +S
Sbjct: 193 LEMTPQRGDVYTCHVEHPSLQSPIMVEWRAQSESAQSKMLS 233


>ref|XP_590228.2| PREDICTED: similar to RT1-149 protein [Bos taurus]
          Length = 311

 Score = 67.8 bits (164), Expect = 2e-11
 Identities = 53/184 (28%), Positives = 80/184 (43%), Gaps = 16/184 (8%)
 Frame = +3

Query: 345 FTYCISFNKDLLTCW---------DPQETRMVPCEFGALNALATYFSVYLNQQEKLLQRL 497
           FTY     +D  T W         D     M P ++ A   +A Y           ++R 
Sbjct: 84  FTYGCELLEDGRTTWHWQYGYDGEDYLSLHMDPLQYTAATFVAQYTKQKWEAGGNFIERD 143

Query: 498 SNGLQN-CATHTQPFWKSLT------HRTQPPSVQVAKTTPFNTRESVMLACYVWGFYPA 656
            N L+  C       W+ LT      +RT+PP   +      + RE V L C+  GFYPA
Sbjct: 144 KNYLEKECILW---LWRYLTFGGESLNRTEPPKTHMTHHR-ISDRE-VTLRCWALGFYPA 198

Query: 657 DVIITWRKNGQPVLPHGKAHMITQPNGDWTYQTVSHLATTPSYGDTYTCVVEHIGVPEPI 836
            + +TW++NG+      +  + T+P+GD T+Q  + L         YTC V+H G+ EP+
Sbjct: 199 KISLTWQRNGEDQTQDMEL-VETRPSGDGTFQKWAALVVPSGEEQKYTCRVQHEGLQEPL 257

Query: 837 LQDW 848
              W
Sbjct: 258 TLRW 261


>ref|NP_001012697.1| major histocompatibility complex, class II, DY beta [Bos taurus]
          Length = 259

 Score = 67.8 bits (164), Expect = 2e-11
 Identities = 46/153 (30%), Positives = 62/153 (40%), Gaps = 1/153 (0%)
 Frame = +3

Query: 420 EFGALNALATYFSVYLNQQEKLLQRLSNGLQNCATHTQPFWKSLT-HRTQPPSVQVAKTT 596
           EF A+  L    +   N Q+ LL      +     H        T  R   P+V V+  +
Sbjct: 76  EFVAVTELGRVCAEIWNTQKDLLAEFRAYVDTLCRHNYKETAGFTVQRRVEPTVTVSPAS 135

Query: 597 PFNTRESVMLACYVWGFYPADVIITWRKNGQPVLPHGKAHMITQPNGDWTYQTVSHLATT 776
                   +L C V  FYP  V + W +N Q          +TQ NGDWTYQ    L T 
Sbjct: 136 TEALNHHNLLVCSVTDFYPRQVKVKWFRNQQEQTAGVGFTPLTQ-NGDWTYQIHVMLETV 194

Query: 777 PSYGDTYTCVVEHIGVPEPILQDWTSGLSPVQT 875
           P  GD Y C V+H  +  PI  +W +     Q+
Sbjct: 195 PQLGDVYVCHVDHPSLQSPITVEWRAQSESAQS 227


>ref|NP_001012695.1| major histocompatibility complex, class II, DR alpha [Bos taurus]
          Length = 253

 Score = 65.9 bits (159), Expect = 8e-11
 Identities = 31/94 (32%), Positives = 48/94 (51%)
 Frame = +3

Query: 567 PPSVQVAKTTPFNTRESVMLACYVWGFYPADVIITWRKNGQPVLPHGKAHMITQPNGDWT 746
           PP V +    P    E   L C++  F P  + +TW +NG+PV   G +  +  P  D  
Sbjct: 110 PPEVTLLPNKPVELGEPNTLICFIDKFSPPVISVTWLRNGKPVTD-GVSQTVFLPRNDHL 168

Query: 747 YQTVSHLATTPSYGDTYTCVVEHIGVPEPILQDW 848
           ++   +L   P+  D Y C VEH+G+ EP+L+ W
Sbjct: 169 FRKFHYLPFLPTTEDVYDCKVEHLGLNEPLLKHW 202


>ref|XP_878034.1| PREDICTED: similar to HLA class I histocompatibility antigen, B-14
           alpha chain precursor (MHC class I antigen B*14) isoform
           4 [Bos taurus]
          Length = 324

 Score = 65.5 bits (158), Expect = 1e-10
 Identities = 36/100 (36%), Positives = 54/100 (54%)
 Frame = +3

Query: 558 RTQPPSVQVAKTTPFNTRESVMLACYVWGFYPADVIITWRKNGQPVLPHGKAHMITQPNG 737
           R  PP   VA   P + RE V L C+  GFYP ++ +TW++NG+  +   +  + T+P+G
Sbjct: 202 RADPPKAHVAHH-PSSERE-VTLRCWALGFYPEEISLTWQRNGEDQIQDMEL-VETRPSG 258

Query: 738 DWTYQTVSHLATTPSYGDTYTCVVEHIGVPEPILQDWTSG 857
           D T+Q  + LA        YTC V+H G+  P+   W  G
Sbjct: 259 DGTFQKWAALAVPSGEEQRYTCRVQHEGLQGPLTLRWGKG 298


  Database: RefSeqBP
    Posted date:  Aug 1, 2006  7:14 PM
  Number of letters in database: 16,112,626
  Number of sequences in database:  33,508
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,524,206
Number of Sequences: 33508
Number of extensions: 1770938
Number of successful extensions: 6440
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 5007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6381
length of database: 16,112,626
effective HSP length: 105
effective length of database: 12,594,286
effective search space used: 4634697248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqCP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPL01_0024_D06
         (1421 letters)

Database: RefSeqCP 
           33,732 sequences; 19,266,565 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_849737.1| PREDICTED: similar to HLA class II histocompati...   386   e-107
Alignment   gi|XP_861384.1| PREDICTED: similar to HLA class II histocompati...    75   2e-13
Alignment   gi|XP_850395.1| PREDICTED: similar to HLA class II histocompati...    74   3e-13
Alignment   gi|NP_001014768.1| MHC class II DLA DRB1 beta chain [Canis fami...    73   8e-13
Alignment   gi|NP_001014403.1| MHC class II DLA-DQ beta chain b1 domain [Ca...    72   1e-12
Alignment   gi|NP_001014400.1| MHC class I DLA-64 [Canis familiaris]              71   3e-12
Alignment   gi|NP_001014767.1| MHC class I DLA-88 [Canis familiaris]              70   7e-12
Alignment   gi|NP_001014401.1| MHC class I DLA-12 [Canis familiaris]              69   1e-11
Alignment   gi|NP_001011723.1| MHC class II DR alpha chain [Canis familiaris]     69   1e-11
Alignment   gi|XP_855624.1| PREDICTED: MHC class Ib [Canis familiaris]            60   5e-09

>ref|XP_849737.1| PREDICTED: similar to HLA class II histocompatibility antigen, DM
            beta chain precursor (MHC class II antigen DMB) [Canis
            familiaris]
          Length = 263

 Score =  386 bits (992), Expect = e-107
 Identities = 177/243 (72%), Positives = 200/243 (82%)
 Frame = +3

Query: 288  FVAHVESTCLLDDEGTPQDFTYCISFNKDLLTCWDPQETRMVPCEFGALNALATYFSVYL 467
            F+AHVES+CLLDD+GTP+DFTYC+SFNKDLLTCWDP E +MVP EFG LN LA Y S YL
Sbjct: 21   FIAHVESSCLLDDDGTPKDFTYCVSFNKDLLTCWDPDEAKMVPYEFGTLNVLANYLSDYL 80

Query: 468  NQQEKLLQRLSNGLQNCATHTQPFWKSLTHRTQPPSVQVAKTTPFNTRESVMLACYVWGF 647
            NQQE L QRLSNGLQ+CATHTQ FW SLTHRT+PP+VQVAK+TPFNT+ESVMLACYVWGF
Sbjct: 81   NQQEYLHQRLSNGLQDCATHTQSFWGSLTHRTRPPTVQVAKSTPFNTKESVMLACYVWGF 140

Query: 648  YPADVIITWRKNGQPVLPHGKAHMITQPNGDWTYQTVSHLATTPSYGDTYTCVVEHIGVP 827
            YPADV I+WRKNGQPV  H  A  + QPNGDWTYQTVSHLATTPSY DTYTCVVEHIG P
Sbjct: 141  YPADVTISWRKNGQPVPSHSSALNMAQPNGDWTYQTVSHLATTPSYEDTYTCVVEHIGAP 200

Query: 828  EPILQDWTSGLSPVQTVKISVSVATXXXXXXXXXXXXXXCQRSVAPGYIFLPGTTYPEGQ 1007
            EP+ +DWT GLSP+QTVK+SVS  T               +R+ + GY+FLPGT+YPEGQ
Sbjct: 201  EPVCEDWTPGLSPMQTVKVSVSGVTLGLGFIIFSLGLLSWRRAGSSGYVFLPGTSYPEGQ 260

Query: 1008 HIS 1016
            H+S
Sbjct: 261  HVS 263


>ref|XP_861384.1| PREDICTED: similar to HLA class II histocompatibility antigen, DO
           beta chain precursor (MHC class II antigen DOB) isoform
           2 [Canis familiaris]
          Length = 228

 Score = 74.7 bits (182), Expect = 2e-13
 Identities = 48/149 (32%), Positives = 67/149 (44%), Gaps = 6/149 (4%)
 Frame = +3

Query: 423 FGALNALATYFSVYLNQQEKLLQRLSNGLQNCATHTQPFWKSLT--HRTQPPSVQVAKTT 596
           F AL  L    +   N Q  +L+R    +     H        T   + QP      + T
Sbjct: 73  FVALTELGKPDAELWNSQPGILERSRASVDLLCRHNYELGAPFTVGRKVQPEVTVYPERT 132

Query: 597 PFNTRESVMLACYVWGFYPADVIITWRKNGQP----VLPHGKAHMITQPNGDWTYQTVSH 764
           P     +++L C V GFYP D+ I W +NGQ     V+  G        NGDWT+QT+  
Sbjct: 133 PSMQHHNLLL-CSVTGFYPGDIKIKWFRNGQEERVGVMSTGLIR-----NGDWTFQTMVM 186

Query: 765 LATTPSYGDTYTCVVEHIGVPEPILQDWT 851
           L  TP  GD YTC+V H  +  P+  +W+
Sbjct: 187 LEMTPELGDVYTCLVNHPSLLSPVSVEWS 215


>ref|XP_850395.1| PREDICTED: similar to HLA class II histocompatibility antigen, DO
           beta chain precursor (MHC class II antigen DOB) isoform
           1 [Canis familiaris]
          Length = 270

 Score = 74.3 bits (181), Expect = 3e-13
 Identities = 48/148 (32%), Positives = 66/148 (44%), Gaps = 6/148 (4%)
 Frame = +3

Query: 423 FGALNALATYFSVYLNQQEKLLQRLSNGLQNCATHTQPFWKSLT--HRTQPPSVQVAKTT 596
           F AL  L    +   N Q  +L+R    +     H        T   + QP      + T
Sbjct: 73  FVALTELGKPDAELWNSQPGILERSRASVDLLCRHNYELGAPFTVGRKVQPEVTVYPERT 132

Query: 597 PFNTRESVMLACYVWGFYPADVIITWRKNGQP----VLPHGKAHMITQPNGDWTYQTVSH 764
           P     +++L C V GFYP D+ I W +NGQ     V+  G        NGDWT+QT+  
Sbjct: 133 PSMQHHNLLL-CSVTGFYPGDIKIKWFRNGQEERVGVMSTGLIR-----NGDWTFQTMVM 186

Query: 765 LATTPSYGDTYTCVVEHIGVPEPILQDW 848
           L  TP  GD YTC+V H  +  P+  +W
Sbjct: 187 LEMTPELGDVYTCLVNHPSLLSPVSVEW 214


>ref|NP_001014768.1| MHC class II DLA DRB1 beta chain [Canis familiaris]
          Length = 266

 Score = 72.8 bits (177), Expect = 8e-13
 Identities = 46/157 (29%), Positives = 70/157 (44%), Gaps = 1/157 (0%)
 Frame = +3

Query: 420 EFGALNALATYFSVYLNQQEKLLQRLSNGLQNCATHTQPFWKSLT-HRTQPPSVQVAKTT 596
           EF A+  L    +   N Q+++L++    +     H     +S T  R   P+V V  T 
Sbjct: 75  EFRAVTELGRPVAESWNGQKEILEQERATVDTYCRHNYGVIESFTVQRRVEPTVTVYPTK 134

Query: 597 PFNTRESVMLACYVWGFYPADVIITWRKNGQPVLPHGKAHMITQPNGDWTYQTVSHLATT 776
               +   +L C V GFYP  + + W +NGQ     G        NGDWT+Q +  L   
Sbjct: 135 TQTLQHHNLLVCSVNGFYPGHIEVRWLRNGQEE-EAGVVSTGLIRNGDWTFQILVMLEIV 193

Query: 777 PSYGDTYTCVVEHIGVPEPILQDWTSGLSPVQTVKIS 887
           P  G+ YTC VEH  +  P+  +W +     Q+  +S
Sbjct: 194 PQSGEVYTCQVEHPSLTSPVTVEWRAQSDSAQSKMLS 230


>ref|NP_001014403.1| MHC class II DLA-DQ beta chain b1 domain [Canis familiaris]
          Length = 269

 Score = 72.4 bits (176), Expect = 1e-12
 Identities = 49/162 (30%), Positives = 74/162 (45%), Gaps = 6/162 (3%)
 Frame = +3

Query: 420 EFGALNALATYFSVYLNQQEKLLQRLSNGLQNCATHT--QPFWKSLTHRTQPP-SVQVAK 590
           EF A+  L    + Y N+Q+  + R+   L     H   +    +L  R +P  ++  +K
Sbjct: 78  EFRAVTELGRPDAEYWNRQKDEMDRVRAELDTVCRHNYGREELTTLQRRVEPTVTIFPSK 137

Query: 591 TTPFNTRESVMLACYVWGFYPADVIITWRKNGQPVLPHGKAHMITQP---NGDWTYQTVS 761
           T   N     +L C V  FYP  + + W +N Q       A +++ P   NGDWT+Q + 
Sbjct: 138 TEVLNHHN--LLVCSVTDFYPGQIKVRWFRNDQ----EQTAGVVSTPLIRNGDWTFQILV 191

Query: 762 HLATTPSYGDTYTCVVEHIGVPEPILQDWTSGLSPVQTVKIS 887
            L  TP  GD YTC VEH  +  PI   W +     Q+  +S
Sbjct: 192 MLEMTPQRGDVYTCHVEHASLQSPITVQWRAQSESAQSKMLS 233


>ref|NP_001014400.1| MHC class I DLA-64 [Canis familiaris]
          Length = 361

 Score = 70.9 bits (172), Expect = 3e-12
 Identities = 48/154 (31%), Positives = 77/154 (50%), Gaps = 2/154 (1%)
 Frame = +3

Query: 444 ATYFSVYLNQQ--EKLLQRLSNGLQNCATHTQPFWKSLTHRTQPPSVQVAKTTPFNTRES 617
           A Y+ VYL  +  + LL+ L  G            K     T PP + + +  P +  E 
Sbjct: 177 AQYYRVYLQGECVQSLLKYLERG------------KETLQLTDPPKIYLTRH-PISDHE- 222

Query: 618 VMLACYVWGFYPADVIITWRKNGQPVLPHGKAHMITQPNGDWTYQTVSHLATTPSYGDTY 797
           V L C+  GFYPA++ +TW+++G+      +  + T+P GD T+Q  + +         Y
Sbjct: 223 VTLRCWALGFYPAEITLTWQRDGEDQTQDTEV-VDTRPAGDGTFQKWAAVVVPSGQEQRY 281

Query: 798 TCVVEHIGVPEPILQDWTSGLSPVQTVKISVSVA 899
           TC V+H G+ EP+ + W    SP+ T+ I VS+A
Sbjct: 282 TCHVQHEGLAEPVTRRWEP--SPLSTIVI-VSIA 312


>ref|NP_001014767.1| MHC class I DLA-88 [Canis familiaris]
          Length = 361

 Score = 69.7 bits (169), Expect = 7e-12
 Identities = 40/114 (35%), Positives = 65/114 (57%)
 Frame = +3

Query: 558 RTQPPSVQVAKTTPFNTRESVMLACYVWGFYPADVIITWRKNGQPVLPHGKAHMITQPNG 737
           R +PPS +V +  P +  E V L C+  GFYPA++ +TW+++G+      +  + T+P G
Sbjct: 205 RAEPPSTRVTRH-PISDHE-VTLRCWALGFYPAEITLTWQRDGEDQTQDTEV-VDTRPAG 261

Query: 738 DWTYQTVSHLATTPSYGDTYTCVVEHIGVPEPILQDWTSGLSPVQTVKISVSVA 899
           D T+Q  + +         YTC V+H G+ EP+ + W    SP+ T+ I VS+A
Sbjct: 262 DGTFQKWAAVVVPSGQEQRYTCHVQHEGLAEPVTRRWEP--SPLSTIVI-VSIA 312


>ref|NP_001014401.1| MHC class I DLA-12 [Canis familiaris]
          Length = 358

 Score = 68.9 bits (167), Expect = 1e-11
 Identities = 40/114 (35%), Positives = 65/114 (57%)
 Frame = +3

Query: 558 RTQPPSVQVAKTTPFNTRESVMLACYVWGFYPADVIITWRKNGQPVLPHGKAHMITQPNG 737
           R +PPS +V +  P +  E V L C+  GFYPA++ +TW+++G+      +  + T+P G
Sbjct: 202 RAEPPSTRVTRH-PVSDHE-VTLRCWALGFYPAEITLTWQRDGEDQTQDTEV-VDTRPAG 258

Query: 738 DWTYQTVSHLATTPSYGDTYTCVVEHIGVPEPILQDWTSGLSPVQTVKISVSVA 899
           D T+Q  + +         YTC V+H G+ EP+ + W    SP+ T+ I VS+A
Sbjct: 259 DGTFQKWAAVVVPSGQEQRYTCHVQHEGLVEPVTRRWEP--SPLSTIVI-VSIA 309


>ref|NP_001011723.1| MHC class II DR alpha chain [Canis familiaris]
          Length = 254

 Score = 68.9 bits (167), Expect = 1e-11
 Identities = 35/94 (37%), Positives = 48/94 (51%)
 Frame = +3

Query: 567 PPSVQVAKTTPFNTRESVMLACYVWGFYPADVIITWRKNGQPVLPHGKAHMITQPNGDWT 746
           PP V V   TP    E  +L C++  F P  + +TW +NG PV   G +  I  P  D  
Sbjct: 111 PPEVTVLSNTPVELGEPNILICFIDKFSPPVINVTWLRNGNPVTT-GVSETIFLPREDHL 169

Query: 747 YQTVSHLATTPSYGDTYTCVVEHIGVPEPILQDW 848
           ++   +L   PS  D Y C VEH G+ EP+L+ W
Sbjct: 170 FRKFHYLPFLPSAEDVYDCKVEHWGLDEPLLKHW 203


>ref|XP_855624.1| PREDICTED: MHC class Ib [Canis familiaris]
          Length = 381

 Score = 60.1 bits (144), Expect = 5e-09
 Identities = 35/114 (30%), Positives = 56/114 (49%)
 Frame = +3

Query: 558 RTQPPSVQVAKTTPFNTRESVMLACYVWGFYPADVIITWRKNGQPVLPHGKAHMITQPNG 737
           R  PP   V +  P +  E V L C+  GFYPA++ +TW+++G+      +  + T+P G
Sbjct: 211 RADPPKTSVTRR-PISEHE-VTLKCWALGFYPAEITLTWQRDGEDQTQDTEL-VETRPGG 267

Query: 738 DWTYQTVSHLATTPSYGDTYTCVVEHIGVPEPILQDWTSGLSPVQTVKISVSVA 899
           D T+Q  + +         YTC + H  +P+PI   W     P  T+ I   +A
Sbjct: 268 DGTFQKWAAVVVPSGEEQRYTCHILHKSLPKPITLRWEP--PPQSTIPIVSIIA 319


  Database: RefSeqCP
    Posted date:  Aug 1, 2006  9:25 PM
  Number of letters in database: 19,266,565
  Number of sequences in database:  33,732
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,286,054
Number of Sequences: 33732
Number of extensions: 2066704
Number of successful extensions: 7427
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 5746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7396
length of database: 19,266,565
effective HSP length: 107
effective length of database: 15,657,241
effective search space used: 5730550206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqHP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPL01_0024_D06
         (1421 letters)

Database: RefSeqHP 
           39,411 sequences; 17,774,539 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_002109.1| major histocompatibility complex, class II, DM ...   377   e-104
Alignment   gi|NP_002115.1| major histocompatibility complex, class II, DR ...    82   1e-15
Alignment   gi|XP_949921.1| PREDICTED: similar to HLA class II histocompati...    80   3e-15
Alignment   gi|XP_945926.1| PREDICTED: similar to HLA class II histocompati...    79   7e-15
Alignment   gi|XP_949915.1| PREDICTED: similar to HLA class II histocompati...    79   7e-15
Alignment   gi|NP_068818.4| major histocompatibility complex, class II, DR ...    79   7e-15
Alignment   gi|NP_072049.2| major histocompatibility complex, class II, DR ...    79   7e-15
Alignment   gi|NP_002114.2| major histocompatibility complex, class II, DQ ...    78   2e-14
Alignment   gi|NP_002116.2| major histocompatibility complex, class II, DR ...    76   6e-14
Alignment   gi|NP_002111.1| major histocompatibility complex, class II, DO ...    74   2e-13

>ref|NP_002109.1| major histocompatibility complex, class II, DM beta precursor [Homo
            sapiens]
          Length = 263

 Score =  377 bits (969), Expect = e-104
 Identities = 174/243 (71%), Positives = 195/243 (80%)
 Frame = +3

Query: 288  FVAHVESTCLLDDEGTPQDFTYCISFNKDLLTCWDPQETRMVPCEFGALNALATYFSVYL 467
            FVAHVESTCLLDD GTP+DFTYCISFNKDLLTCWDP+E +M PCEFG LN+LA   S +L
Sbjct: 21   FVAHVESTCLLDDAGTPKDFTYCISFNKDLLTCWDPEENKMAPCEFGVLNSLANVLSQHL 80

Query: 468  NQQEKLLQRLSNGLQNCATHTQPFWKSLTHRTQPPSVQVAKTTPFNTRESVMLACYVWGF 647
            NQ++ L+QRL NGLQNCATHTQPFW SLT+RT+PPSVQVAKTTPFNTRE VMLACYVWGF
Sbjct: 81   NQKDTLMQRLRNGLQNCATHTQPFWGSLTNRTRPPSVQVAKTTPFNTREPVMLACYVWGF 140

Query: 648  YPADVIITWRKNGQPVLPHGKAHMITQPNGDWTYQTVSHLATTPSYGDTYTCVVEHIGVP 827
            YPA+V ITWRKNG+ V+PH  AH   QPNGDWTYQT+SHLA TPSYGDTYTCVVEHIG P
Sbjct: 141  YPAEVTITWRKNGKLVMPHSSAHKTAQPNGDWTYQTLSHLALTPSYGDTYTCVVEHIGAP 200

Query: 828  EPILQDWTSGLSPVQTVKISVSVATXXXXXXXXXXXXXXCQRSVAPGYIFLPGTTYPEGQ 1007
            EPIL+DWT GLSP+QT+K+SVS  T               +R+    Y  LPG+ Y EG 
Sbjct: 201  EPILRDWTPGLSPMQTLKVSVSAVTLGLGLIIFSLGVISWRRAGHSSYTPLPGSNYSEGW 260

Query: 1008 HIS 1016
            HIS
Sbjct: 261  HIS 263


>ref|NP_002115.1| major histocompatibility complex, class II, DR beta 1 precursor
           [Homo sapiens]
          Length = 266

 Score = 82.0 bits (201), Expect = 1e-15
 Identities = 52/162 (32%), Positives = 78/162 (48%), Gaps = 6/162 (3%)
 Frame = +3

Query: 420 EFGALNALATYFSVYLNQQEKLLQRLSNGLQNCATHTQPFWKSLT--HRTQPP-SVQVAK 590
           E+ A+  L    + Y N Q+ LL++    +     H     +S T   R +P  +V  +K
Sbjct: 75  EYRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTVQRRVEPKVTVYPSK 134

Query: 591 TTPFNTRESVMLACYVWGFYPADVIITWRKNGQPVLPHGKAHMITQ---PNGDWTYQTVS 761
           T P       +L C V GFYP  + + W +NGQ      KA +++     NGDWT+QT+ 
Sbjct: 135 TQPLQHHN--LLVCSVSGFYPGSIEVRWFRNGQ----EEKAGVVSTGLIQNGDWTFQTLV 188

Query: 762 HLATTPSYGDTYTCVVEHIGVPEPILQDWTSGLSPVQTVKIS 887
            L T P  G+ YTC VEH  V  P+  +W +     Q+  +S
Sbjct: 189 MLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLS 230


>ref|XP_949921.1| PREDICTED: similar to HLA class II histocompatibility antigen,
           DRB1-9 beta chain precursor (MHC class I antigen DRB1*9)
           (DR-9) (DR9) isoform 3 [Homo sapiens]
          Length = 325

 Score = 80.5 bits (197), Expect = 3e-15
 Identities = 53/154 (34%), Positives = 73/154 (47%), Gaps = 6/154 (3%)
 Frame = +3

Query: 420 EFGALNALATYFSVYLNQQEKLLQRLSNGLQNCATHTQPFWKSLT-HRTQPPSVQV--AK 590
           E+ A+  L    +   N Q+  L+R    +     H     +S T  R   P V V  AK
Sbjct: 75  EYRAVTELGRPVAESWNSQKDFLERRRAEVDTVCRHNYGVGESFTVQRRVHPEVTVYPAK 134

Query: 591 TTPFNTRESVMLACYVWGFYPADVIITWRKNGQPVLPHGKAHMITQ---PNGDWTYQTVS 761
           T P       +L C V GFYP  + + W +NGQ      KA +++     NGDWT+QT+ 
Sbjct: 135 TQPLQHHN--LLVCSVSGFYPGSIEVRWFRNGQ----EEKAGVVSTGLIQNGDWTFQTLV 188

Query: 762 HLATTPSYGDTYTCVVEHIGVPEPILQDWTSGLS 863
            L T P  G+ YTC VEH  V  P+  +W+  LS
Sbjct: 189 MLETVPRSGEVYTCQVEHPSVMSPLTVEWSEQLS 222


>ref|XP_945926.1| PREDICTED: similar to HLA class II histocompatibility antigen,
           DRB1-9 beta chain precursor (MHC class I antigen DRB1*9)
           (DR-9) (DR9) isoform 1 [Homo sapiens]
          Length = 266

 Score = 79.3 bits (194), Expect = 7e-15
 Identities = 53/162 (32%), Positives = 75/162 (46%), Gaps = 6/162 (3%)
 Frame = +3

Query: 420 EFGALNALATYFSVYLNQQEKLLQRLSNGLQNCATHTQPFWKSLT-HRTQPPSVQV--AK 590
           E+ A+  L    +   N Q+  L+R    +     H     +S T  R   P V V  AK
Sbjct: 75  EYRAVTELGRPVAESWNSQKDFLERRRAEVDTVCRHNYGVGESFTVQRRVHPEVTVYPAK 134

Query: 591 TTPFNTRESVMLACYVWGFYPADVIITWRKNGQPVLPHGKAHMITQ---PNGDWTYQTVS 761
           T P       +L C V GFYP  + + W +NGQ      KA +++     NGDWT+QT+ 
Sbjct: 135 TQPLQHHN--LLVCSVSGFYPGSIEVRWFRNGQ----EEKAGVVSTGLIQNGDWTFQTLV 188

Query: 762 HLATTPSYGDTYTCVVEHIGVPEPILQDWTSGLSPVQTVKIS 887
            L T P  G+ YTC VEH  V  P+  +W +     Q+  +S
Sbjct: 189 MLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLS 230


>ref|XP_949915.1| PREDICTED: similar to HLA class II histocompatibility antigen,
           DRB1-9 beta chain precursor (MHC class I antigen DRB1*9)
           (DR-9) (DR9) isoform 2 [Homo sapiens]
          Length = 284

 Score = 79.3 bits (194), Expect = 7e-15
 Identities = 53/162 (32%), Positives = 75/162 (46%), Gaps = 6/162 (3%)
 Frame = +3

Query: 420 EFGALNALATYFSVYLNQQEKLLQRLSNGLQNCATHTQPFWKSLT-HRTQPPSVQV--AK 590
           E+ A+  L    +   N Q+  L+R    +     H     +S T  R   P V V  AK
Sbjct: 93  EYRAVTELGRPVAESWNSQKDFLERRRAEVDTVCRHNYGVGESFTVQRRVHPEVTVYPAK 152

Query: 591 TTPFNTRESVMLACYVWGFYPADVIITWRKNGQPVLPHGKAHMITQ---PNGDWTYQTVS 761
           T P       +L C V GFYP  + + W +NGQ      KA +++     NGDWT+QT+ 
Sbjct: 153 TQPLQHHN--LLVCSVSGFYPGSIEVRWFRNGQ----EEKAGVVSTGLIQNGDWTFQTLV 206

Query: 762 HLATTPSYGDTYTCVVEHIGVPEPILQDWTSGLSPVQTVKIS 887
            L T P  G+ YTC VEH  V  P+  +W +     Q+  +S
Sbjct: 207 MLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLS 248


>ref|NP_068818.4| major histocompatibility complex, class II, DR beta 4 precursor
           [Homo sapiens]
          Length = 266

 Score = 79.3 bits (194), Expect = 7e-15
 Identities = 52/162 (32%), Positives = 78/162 (48%), Gaps = 6/162 (3%)
 Frame = +3

Query: 420 EFGALNALATYFSVYLNQQEKLLQRLSNGLQNCATHTQPFWKSLT--HRTQPP-SVQVAK 590
           E+ A+  L    + Y N Q+ LL+R    +     +     +S T   R QP  +V  +K
Sbjct: 75  EYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFTVQRRVQPKVTVYPSK 134

Query: 591 TTPFNTRESVMLACYVWGFYPADVIITWRKNGQPVLPHGKAHMITQ---PNGDWTYQTVS 761
           T P       +L C V GFYP  + + W +NGQ      KA +++     NGDWT+QT+ 
Sbjct: 135 TQPLQHHN--LLVCSVNGFYPGSIEVRWFRNGQ----EEKAGVVSTGLIQNGDWTFQTLV 188

Query: 762 HLATTPSYGDTYTCVVEHIGVPEPILQDWTSGLSPVQTVKIS 887
            L T P  G+ YTC VEH  +  P+   W++     Q+  +S
Sbjct: 189 MLETVPRSGEVYTCQVEHPSMMSPLTVQWSARSESAQSKMLS 230


>ref|NP_072049.2| major histocompatibility complex, class II, DR beta 3 precursor
           [Homo sapiens]
          Length = 266

 Score = 79.3 bits (194), Expect = 7e-15
 Identities = 53/162 (32%), Positives = 76/162 (46%), Gaps = 6/162 (3%)
 Frame = +3

Query: 420 EFGALNALATYFSVYLNQQEKLLQRLSNGLQNCATHTQPFWKSLT-HRTQPPSVQV--AK 590
           E+ A+  L    +   N Q+ LL++    + N   H     +S T  R   P V V  AK
Sbjct: 75  EYRAVTELGRPVAESWNSQKDLLEQKRGRVDNYCRHNYGVGESFTVQRRVHPQVTVYPAK 134

Query: 591 TTPFNTRESVMLACYVWGFYPADVIITWRKNGQPVLPHGKAHMITQ---PNGDWTYQTVS 761
           T P       +L C V GFYP  + + W +NGQ      KA +++     NGDWT+QT+ 
Sbjct: 135 TQPLQHHN--LLVCSVSGFYPGSIEVRWFRNGQ----EEKAGVVSTGLIQNGDWTFQTLV 188

Query: 762 HLATTPSYGDTYTCVVEHIGVPEPILQDWTSGLSPVQTVKIS 887
            L T P  G+ YTC VEH  V   +  +W +     Q+  +S
Sbjct: 189 MLETVPRSGEVYTCQVEHPSVTSALTVEWRARSESAQSKMLS 230


>ref|NP_002114.2| major histocompatibility complex, class II, DQ beta 1 precursor
           [Homo sapiens]
          Length = 261

 Score = 78.2 bits (191), Expect = 2e-14
 Identities = 48/160 (30%), Positives = 74/160 (46%), Gaps = 4/160 (2%)
 Frame = +3

Query: 420 EFGALNALATYFSVYLNQQEKLLQRLSNGLQNCATHT-QPFWKSLTHRTQPPSVQVAKTT 596
           EF A+  L    + Y N Q+ +L+R    +     H  Q   ++   R   P+V ++ + 
Sbjct: 78  EFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQRRVEPTVTISPSR 137

Query: 597 PFNTRESVMLACYVWGFYPADVIITWRKNGQPVLPHGKAHMITQP---NGDWTYQTVSHL 767
                   +L C V  FYPA + + W +N Q       A +++ P   NGDWT+Q +  L
Sbjct: 138 TEALNHHNLLVCSVTDFYPAQIKVRWFRNDQ----EETAGVVSTPLIRNGDWTFQILVML 193

Query: 768 ATTPSYGDTYTCVVEHIGVPEPILQDWTSGLSPVQTVKIS 887
             TP  GD YTC VEH  +  PI  +W +     Q+  +S
Sbjct: 194 EMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLS 233


>ref|NP_002116.2| major histocompatibility complex, class II, DR beta 5 precursor
           [Homo sapiens]
          Length = 266

 Score = 76.3 bits (186), Expect = 6e-14
 Identities = 48/160 (30%), Positives = 71/160 (44%), Gaps = 4/160 (2%)
 Frame = +3

Query: 420 EFGALNALATYFSVYLNQQEKLLQRLSNGLQNCATHTQPFWKSLT-HRTQPPSVQVAKTT 596
           E+ A+  L    + Y N Q+  L+     +     H     +S T  R   P V V    
Sbjct: 75  EYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTVQRRVEPKVTVYPAR 134

Query: 597 PFNTRESVMLACYVWGFYPADVIITWRKNGQPVLPHGKAHMITQ---PNGDWTYQTVSHL 767
               +   +L C V GFYP  + + W +N Q      KA +++     NGDWT+QT+  L
Sbjct: 135 TQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQ----EEKAGVVSTGLIQNGDWTFQTLVML 190

Query: 768 ATTPSYGDTYTCVVEHIGVPEPILQDWTSGLSPVQTVKIS 887
            T P  G+ YTC VEH  V  P+  +W +     Q+  +S
Sbjct: 191 ETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLS 230


>ref|NP_002111.1| major histocompatibility complex, class II, DO beta precursor [Homo
           sapiens]
          Length = 273

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 56/191 (29%), Positives = 77/191 (40%), Gaps = 4/191 (2%)
 Frame = +3

Query: 288 FVAHVESTCLLDDEGTPQDFTYCISFNKDLLTCWDPQETRMVPCEFGALNALATYFSVYL 467
           FV   ++ C   +      F     FN +    +D      V     AL  L    +   
Sbjct: 33  FVIQAKADCYFTNGTEKVQFVVRFIFNLEEYVRFDSDVGMFV-----ALTKLGQPDAEQW 87

Query: 468 NQQEKLLQRLSNGLQNCATHTQPFWKSLT--HRTQPPSVQVAKTTPFNTRESVMLACYVW 641
           N +  LL+R    +     H        T   + QP      + TP   + + +L C V 
Sbjct: 88  NSRLDLLERSRQAVDGVCRHNYRLGAPFTVGRKVQPEVTVYPERTPLLHQHN-LLHCSVT 146

Query: 642 GFYPADVIITWRKNGQPVLPHGKAHMITQP--NGDWTYQTVSHLATTPSYGDTYTCVVEH 815
           GFYP D+ I W  NGQ         M T P  NGDWT+QTV  L  TP  G  YTC+V+H
Sbjct: 147 GFYPGDIKIKWFLNGQE---ERAGVMSTGPIRNGDWTFQTVVMLEMTPELGHVYTCLVDH 203

Query: 816 IGVPEPILQDW 848
             +  P+  +W
Sbjct: 204 SSLLSPVSVEW 214


  Database: RefSeqHP
    Posted date:  Aug 2, 2006 12:57 AM
  Number of letters in database: 17,774,539
  Number of sequences in database:  39,411
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,597,583
Number of Sequences: 39411
Number of extensions: 2093956
Number of successful extensions: 8483
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 5902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8231
length of database: 17,774,539
effective HSP length: 106
effective length of database: 13,596,973
effective search space used: 4990089091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqSP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPL01_0024_D06
         (1421 letters)

Database: RefSeqSP 
           1040 sequences; 434,620 total letters

Searching...done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_998933.1| swine leukocyte antigen 7 [Sus scrofa]                68   5e-13
Alignment   gi|NP_999143.1| beta 2-microglobulin [Sus scrofa]                     56   2e-09
Alignment   gi|NP_999362.2| neonatal Fc receptor FcRn [Sus scrofa]                49   4e-07
Alignment   gi|NP_998993.1| IgG heavy chain [Sus scrofa]                          49   4e-07
Alignment   gi|NP_001004039.1| SLA-DM alpha chain [Sus scrofa]                    45   5e-06

>ref|NP_998933.1| swine leukocyte antigen 7 [Sus scrofa]
          Length = 401

 Score = 68.2 bits (165), Expect = 5e-13
 Identities = 37/118 (31%), Positives = 59/118 (50%)
 Frame = +3

Query: 543 KSLTHRTQPPSVQVAKTTPFNTRESVMLACYVWGFYPADVIITWRKNGQPVLPHGKAHMI 722
           K    R+ PP   V +    + +  V L C+  GFYP ++ +TW++ GQ      +  + 
Sbjct: 197 KETLQRSDPPKTHVTRHPSSDNK--VTLRCWALGFYPKEISLTWQQEGQDQSQDVEV-VE 253

Query: 723 TQPNGDWTYQTVSHLATTPSYGDTYTCVVEHIGVPEPILQDWTSGLSPVQTVKISVSV 896
           T+P+GD T++  + L   P    +YTC V+H G+ EP+   W     PV  V I V +
Sbjct: 254 TRPSGDGTFRKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQPPVPIVGIIVGL 311


>ref|NP_999143.1| beta 2-microglobulin [Sus scrofa]
          Length = 118

 Score = 55.8 bits (133), Expect = 2e-09
 Identities = 29/95 (30%), Positives = 47/95 (49%)
 Frame = +3

Query: 564 QPPSVQVAKTTPFNTRESVMLACYVWGFYPADVIITWRKNGQPVLPHGKAHMITQPNGDW 743
           +PP VQV    P    +   L CYV GF+P  + I   KNG+ +         ++   DW
Sbjct: 23  RPPKVQVYSRHPAENGKPNYLNCYVSGFHPPQIEIDLLKNGEKMNAEQSDLSFSK---DW 79

Query: 744 TYQTVSHLATTPSYGDTYTCVVEHIGVPEPILQDW 848
           ++  + H   TP+  D Y+C V+H+ + +P +  W
Sbjct: 80  SFYLLVHTEFTPNAVDQYSCRVKHVTLDKPKIVKW 114


>ref|NP_999362.2| neonatal Fc receptor FcRn [Sus scrofa]
          Length = 356

 Score = 48.5 bits (114), Expect = 4e-07
 Identities = 27/91 (29%), Positives = 44/91 (48%)
 Frame = +3

Query: 564 QPPSVQVAKTTPFNTRESVMLACYVWGFYPADVIITWRKNGQPVLPHGKAHMITQPNGDW 743
           +PPS+++ K  P       +L C  + FYP ++ + + +NG   L  G       PNGD 
Sbjct: 201 EPPSMRM-KARPGTAPGFSVLTCIAFSFYPPELQLRFLRNG---LAAGSGESDIGPNGDG 256

Query: 744 TYQTVSHLATTPSYGDTYTCVVEHIGVPEPI 836
           ++   S L         Y CVV+H G+ +P+
Sbjct: 257 SFHAWSSLTVKSGDEHHYCCVVQHAGLAQPL 287


>ref|NP_998993.1| IgG heavy chain [Sus scrofa]
          Length = 474

 Score = 48.5 bits (114), Expect = 4e-07
 Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 3/108 (2%)
 Frame = +3

Query: 501 NGLQNCATHTQPFWKSLTHRTQPPSVQVAKTTPFNTRESVMLACYVWGFYPADVIITWRK 680
           N +   A  T+   K++    +P    +       +R  V + C V GFYP D+ + W+ 
Sbjct: 349 NNVDLPAPITRTISKAIGQSREPQVYTLPPPAEELSRSKVTVTCLVIGFYPPDIHVEWKS 408

Query: 681 NGQPVLPHGKAHMITQPNGDWTYQTVSHLATTPS---YGDTYTCVVEH 815
           NGQP           Q + D T+   S LA   +   +G+T+ C V H
Sbjct: 409 NGQPEPEGNYRTTPPQQDVDGTFFLYSKLAVDKARWDHGETFECAVMH 456


>ref|NP_001004039.1| SLA-DM alpha chain [Sus scrofa]
          Length = 260

 Score = 44.7 bits (104), Expect = 5e-06
 Identities = 23/82 (28%), Positives = 36/82 (43%)
 Frame = +3

Query: 570 PSVQVAKTTPFNTRESVMLACYVWGFYPADVIITWRKNGQPVLPHGKAHMITQPNGDWTY 749
           P  +V    P    +   L C+V   +P  + +TW  +  PV   G          D ++
Sbjct: 127 PIAEVFTLKPLEFGKPNTLVCFVSNLFPPALTVTWEHHSAPV--EGIGPTFVSATDDLSF 184

Query: 750 QTVSHLATTPSYGDTYTCVVEH 815
           Q  S+L  TP+  D ++CVV H
Sbjct: 185 QAFSYLNFTPTPSDLFSCVVTH 206


  Database: RefSeqSP
    Posted date:  Aug 1, 2006  7:14 PM
  Number of letters in database: 434,620
  Number of sequences in database:  1040
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,540,060
Number of Sequences: 1040
Number of extensions: 46217
Number of successful extensions: 168
Number of sequences better than 1.0e-05: 5
Number of HSP's better than  0.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 434,620
effective HSP length: 80
effective length of database: 351,420
effective search space used: 138108060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqMP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPL01_0024_D06
         (1421 letters)

Database: RefSeqMP 
           45,328 sequences; 21,768,885 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_034518.1| histocompatibility 2, class II, locus Mb2 [Mus ...   342   6e-94
Alignment   gi|NP_034517.2| histocompatibility 2, class II, locus Mb1 [Mus ...   339   4e-93
Alignment   gi|XP_920798.1| PREDICTED: similar to Class II histocompatibili...   149   5e-36
Alignment   gi|NP_996988.1| histocompatibility 2, class II antigen A, beta ...    72   1e-12
Alignment   gi|NP_034512.1| histocompatibility 2, class II antigen E beta [...    72   1e-12
Alignment   gi|NP_034519.2| histocompatibility 2, O region beta locus [Mus ...    72   2e-12
Alignment   gi|XP_997416.1| PREDICTED: similar to H-2 class I histocompatib...    71   2e-12
Alignment   gi|NP_032233.1| histocompatibility 2, T region locus 24 [Mus mu...    70   5e-12
Alignment   gi|NP_038847.1| histocompatibility 2, M region locus 3 [Mus mus...    70   5e-12
Alignment   gi|XP_001002412.1| PREDICTED: similar to histocompatibility 2, ...    70   5e-12

>ref|NP_034518.1| histocompatibility 2, class II, locus Mb2 [Mus musculus]
          Length = 261

 Score =  342 bits (877), Expect = 6e-94
 Identities = 160/241 (66%), Positives = 181/241 (75%)
 Frame = +3

Query: 288  FVAHVESTCLLDDEGTPQDFTYCISFNKDLLTCWDPQETRMVPCEFGALNALATYFSVYL 467
            FVAHVESTC+L+D GTPQDFTYC+SFNKDLL CWDP   ++VPCEFG L+ LA   S  L
Sbjct: 21   FVAHVESTCVLNDAGTPQDFTYCVSFNKDLLACWDPDVGKIVPCEFGVLSRLAEIISNIL 80

Query: 468  NQQEKLLQRLSNGLQNCATHTQPFWKSLTHRTQPPSVQVAKTTPFNTRESVMLACYVWGF 647
            N+QE L+ RL NGLQ+CATHTQPFW  LTHRT+ PSV+VA+TTPFNTRE VMLACYVWGF
Sbjct: 81   NEQESLIHRLQNGLQDCATHTQPFWDVLTHRTRAPSVRVAQTTPFNTREPVMLACYVWGF 140

Query: 648  YPADVIITWRKNGQPVLPHGKAHMITQPNGDWTYQTVSHLATTPSYGDTYTCVVEHIGVP 827
            YPADV ITW KNGQ V  H       QPNGDWTYQTVS+LA TPSYGD YTCVV+H G  
Sbjct: 141  YPADVTITWMKNGQLVPSHSNKEKTAQPNGDWTYQTVSYLALTPSYGDVYTCVVQHSGTS 200

Query: 828  EPILQDWTSGLSPVQTVKISVSVATXXXXXXXXXXXXXXCQRSVAPGYIFLPGTTYPEGQ 1007
            EPI  DWT GLSP+QTVK+SVS AT               ++S +  Y  LPG+TYPEG+
Sbjct: 201  EPIRGDWTPGLSPIQTVKVSVSAATLGLGFIIFCVGFFRWRKSHSSSYTPLPGSTYPEGR 260

Query: 1008 H 1010
            H
Sbjct: 261  H 261


>ref|NP_034517.2| histocompatibility 2, class II, locus Mb1 [Mus musculus]
          Length = 261

 Score =  339 bits (870), Expect = 4e-93
 Identities = 160/241 (66%), Positives = 180/241 (74%)
 Frame = +3

Query: 288  FVAHVESTCLLDDEGTPQDFTYCISFNKDLLTCWDPQETRMVPCEFGALNALATYFSVYL 467
            FVAHVESTC+LDD GTPQDFTYC+SFNKDLL CWDP   ++VPCEFG L   A  FS  L
Sbjct: 21   FVAHVESTCVLDDAGTPQDFTYCVSFNKDLLACWDPDVGKIVPCEFGVLYPWAENFSRIL 80

Query: 468  NQQEKLLQRLSNGLQNCATHTQPFWKSLTHRTQPPSVQVAKTTPFNTRESVMLACYVWGF 647
            N++E LLQRL NGL +CA+HTQPFW +LTHRT+ PSV+VA+TTPFNTRE VMLACYVWGF
Sbjct: 81   NKEESLLQRLQNGLLDCASHTQPFWNALTHRTRAPSVRVAQTTPFNTREPVMLACYVWGF 140

Query: 648  YPADVIITWRKNGQPVLPHGKAHMITQPNGDWTYQTVSHLATTPSYGDTYTCVVEHIGVP 827
            YPADV ITW KNGQ V  H       QPNGDWTYQTVS+LA TPSYGD YTCVV+H G  
Sbjct: 141  YPADVTITWMKNGQLVPSHSNKEKTAQPNGDWTYQTVSYLALTPSYGDVYTCVVQHSGTS 200

Query: 828  EPILQDWTSGLSPVQTVKISVSVATXXXXXXXXXXXXXXCQRSVAPGYIFLPGTTYPEGQ 1007
            EPI  DWT GLSP+QTVK+SVS AT               ++S +  Y  L G+TYPEGQ
Sbjct: 201  EPIRGDWTPGLSPIQTVKVSVSAATLGLGFIIFCVGFFRWRKSHSSSYTPLSGSTYPEGQ 260

Query: 1008 H 1010
            H
Sbjct: 261  H 261


>ref|XP_920798.1| PREDICTED: similar to Class II histocompatibility antigen, M beta 1
           chain precursor (H2-M beta 1 chain) [Mus musculus]
          Length = 167

 Score =  149 bits (377), Expect = 5e-36
 Identities = 67/92 (72%), Positives = 76/92 (82%)
 Frame = +3

Query: 288 FVAHVESTCLLDDEGTPQDFTYCISFNKDLLTCWDPQETRMVPCEFGALNALATYFSVYL 467
           FVAHVESTC+LDD GTPQDFTYC+SFNKDLL CWDP   ++VPCEFG L  LA  FS  L
Sbjct: 21  FVAHVESTCVLDDAGTPQDFTYCVSFNKDLLACWDPIVGKIVPCEFGVLYPLAENFSRIL 80

Query: 468 NQQEKLLQRLSNGLQNCATHTQPFWKSLTHRT 563
           N++E LLQRL NGL +CA+HTQPFW +LTHRT
Sbjct: 81  NKEESLLQRLQNGLPDCASHTQPFWNALTHRT 112


>ref|NP_996988.1| histocompatibility 2, class II antigen A, beta 1 [Mus musculus]
          Length = 265

 Score = 72.0 bits (175), Expect = 1e-12
 Identities = 43/145 (29%), Positives = 65/145 (44%), Gaps = 2/145 (1%)
 Frame = +3

Query: 420 EFGALNALATYFSVYLNQQEKLLQRLSNGLQNCATHTQ--PFWKSLTHRTQPPSVQVAKT 593
           E  A+  L    + Y N Q ++L+R    L     H    P   +   R + P+V ++ +
Sbjct: 73  EHRAVTELGRPDAEYWNSQPEILERTRAELDTVCRHNYEGPETHTSLRRLEQPNVVISLS 132

Query: 594 TPFNTRESVMLACYVWGFYPADVIITWRKNGQPVLPHGKAHMITQPNGDWTYQTVSHLAT 773
                     L C V  FYP  + + W +NGQ       +  + + NGDWT+Q +  L  
Sbjct: 133 RTEALNHHNTLVCSVTDFYPTQIKVRWFRNGQEETVGVSSTQLIR-NGDWTFQVLVMLEM 191

Query: 774 TPSYGDTYTCVVEHIGVPEPILQDW 848
           TP  G+ YTC VEH  +  PI  +W
Sbjct: 192 TPRRGEVYTCHVEHPSLKSPITVEW 216


>ref|NP_034512.1| histocompatibility 2, class II antigen E beta [Mus musculus]
          Length = 264

 Score = 72.0 bits (175), Expect = 1e-12
 Identities = 45/157 (28%), Positives = 69/157 (43%), Gaps = 1/157 (0%)
 Frame = +3

Query: 420 EFGALNALATYFSVYLNQQEKLLQRLSNGLQNCATHTQPFWKS-LTHRTQPPSVQVAKTT 596
           EF A+  L    +   N Q ++L      +     H    + + L  R   P+V V  T 
Sbjct: 73  EFRAVTELGRPDAENWNSQPEILDEKRAAVDTYCRHNYEIFDNFLVPRRVEPTVTVYPTK 132

Query: 597 PFNTRESVMLACYVWGFYPADVIITWRKNGQPVLPHGKAHMITQPNGDWTYQTVSHLATT 776
                   +L C V  FYP ++ + W +NG+     G        NGDWT+QT+  L T 
Sbjct: 133 TQPLEHHNLLVCSVSDFYPGNIEVRWFRNGKEEKT-GIVSTGLVRNGDWTFQTLVMLETV 191

Query: 777 PSYGDTYTCVVEHIGVPEPILQDWTSGLSPVQTVKIS 887
           P  G+ YTC VEH  + +P+  +W +  +  Q   +S
Sbjct: 192 PQSGEVYTCQVEHPSLTDPVTVEWKAQSTSAQNKMLS 228


>ref|NP_034519.2| histocompatibility 2, O region beta locus [Mus musculus]
          Length = 271

 Score = 71.6 bits (174), Expect = 2e-12
 Identities = 38/98 (38%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
 Frame = +3

Query: 558 RTQPPSVQV-AKTTPFNTRESVMLACYVWGFYPADVIITWRKNGQPVLPHGKAHMITQPN 734
           R  PP V V  + TP   + +++L C V GFYP D+ + W +NGQ       +  + + N
Sbjct: 119 RNVPPEVTVYPERTPLLQQHNLLL-CSVTGFYPGDISVKWFRNGQEERSGVMSTGLVR-N 176

Query: 735 GDWTYQTVSHLATTPSYGDTYTCVVEHIGVPEPILQDW 848
           GDWT+QT   L   P  GD Y+C+VEH G+  P+   W
Sbjct: 177 GDWTFQTTVMLEMIPELGDIYSCLVEHPGLLRPVSVAW 214


>ref|XP_997416.1| PREDICTED: similar to H-2 class I histocompatibility antigen, L-D
           alpha chain precursor [Mus musculus]
          Length = 375

 Score = 71.2 bits (173), Expect = 2e-12
 Identities = 51/176 (28%), Positives = 77/176 (43%)
 Frame = +3

Query: 357 ISFNKDLLTCWDPQETRMVPCEFGALNALATYFSVYLNQQEKLLQRLSNGLQNCATHTQP 536
           I+ N+DL T        ++       +  A Y+  Y+  + + +Q L   L+        
Sbjct: 145 IALNEDLKTWTAKDVAALITRRKWEQDGAAEYYKAYM--EGECVQSLRRYLE-------- 194

Query: 537 FWKSLTHRTQPPSVQVAKTTPFNTRESVMLACYVWGFYPADVIITWRKNGQPVLPHGKAH 716
             K +  RT PP   V  T    +   V L C+  GFYPAD+ +TW+ NG+  L      
Sbjct: 195 LGKEMLLRTDPPKAHV--THHPRSEGDVTLRCWALGFYPADITLTWQLNGEE-LTQDMEL 251

Query: 717 MITQPNGDWTYQTVSHLATTPSYGDTYTCVVEHIGVPEPILQDWTSGLSPVQTVKI 884
           + T+P GD T+Q  + +         YTC V H G+PEP+   W    S V  + I
Sbjct: 252 VETRPAGDGTFQKWAAVVVPLGKEQNYTCHVHHEGLPEPLTLRWEPPPSTVSNMVI 307


>ref|NP_032233.1| histocompatibility 2, T region locus 24 [Mus musculus]
          Length = 388

 Score = 70.1 bits (170), Expect = 5e-12
 Identities = 35/97 (36%), Positives = 53/97 (54%)
 Frame = +3

Query: 558 RTQPPSVQVAKTTPFNTRESVMLACYVWGFYPADVIITWRKNGQPVLPHGKAHMITQPNG 737
           RT PP   V  T  F  +E+V L C+  GFYPAD+ +TW+ NG+  L      + T+P+G
Sbjct: 204 RTDPPKTTV--THQFKPKENVTLRCWALGFYPADITLTWQLNGEE-LTQDTELVETRPSG 260

Query: 738 DWTYQTVSHLATTPSYGDTYTCVVEHIGVPEPILQDW 848
           D T+Q  + +         YTC V+H  + +P++  W
Sbjct: 261 DGTFQKWAAVVVPSGEEQRYTCHVQHEALTQPLVLKW 297


>ref|NP_038847.1| histocompatibility 2, M region locus 3 [Mus musculus]
          Length = 336

 Score = 70.1 bits (170), Expect = 5e-12
 Identities = 50/155 (32%), Positives = 71/155 (45%), Gaps = 2/155 (1%)
 Frame = +3

Query: 444 ATYFSVYLNQQ--EKLLQRLSNGLQNCATHTQPFWKSLTHRTQPPSVQVAKTTPFNTRES 617
           A YF  Y+  +  E L + L NG            K +  R  PP   VA       +  
Sbjct: 177 AEYFRAYVEGECLELLHRFLRNG------------KEILQRADPPKAHVAHHP--RPKGD 222

Query: 618 VMLACYVWGFYPADVIITWRKNGQPVLPHGKAHMITQPNGDWTYQTVSHLATTPSYGDTY 797
           V L C+  GFYPAD+ +TW+K+ +  L      + T+P+GD T+Q  + +         Y
Sbjct: 223 VTLRCWALGFYPADITLTWQKDEED-LTQDMELVETRPSGDGTFQKWAAVVVPSGEEQRY 281

Query: 798 TCVVEHIGVPEPILQDWTSGLSPVQTVKISVSVAT 902
           TC V H G+ EP+   W  G S   +V I V VA+
Sbjct: 282 TCYVHHEGLTEPLALKW--GRSSQSSVVIMVIVAS 314


>ref|XP_001002412.1| PREDICTED: similar to histocompatibility 2, T region locus 24 [Mus
           musculus]
          Length = 588

 Score = 70.1 bits (170), Expect = 5e-12
 Identities = 35/97 (36%), Positives = 53/97 (54%)
 Frame = +3

Query: 558 RTQPPSVQVAKTTPFNTRESVMLACYVWGFYPADVIITWRKNGQPVLPHGKAHMITQPNG 737
           RT PP   V  T  F  +E+V L C+  GFYPAD+ +TW+ NG+  L      + T+P+G
Sbjct: 206 RTDPPKTTV--THQFKPKENVTLRCWALGFYPADITLTWQLNGEE-LTQDTELVETRPSG 262

Query: 738 DWTYQTVSHLATTPSYGDTYTCVVEHIGVPEPILQDW 848
           D T+Q  + +         YTC V+H  + +P++  W
Sbjct: 263 DGTFQKWAAVVVPSGEEQRYTCHVQHEALTQPLVLKW 299


  Database: RefSeqMP
    Posted date:  Aug 2, 2006 12:58 AM
  Number of letters in database: 21,768,885
  Number of sequences in database:  45,328
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,953,859
Number of Sequences: 45328
Number of extensions: 2341424
Number of successful extensions: 8592
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 6422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8469
length of database: 21,768,885
effective HSP length: 107
effective length of database: 16,918,789
effective search space used: 6192276774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)