Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPL01_0057_B02
(1410 letters)
Database: RefSeqBP
33,508 sequences; 16,112,626 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_612082.2| PREDICTED: similar to LanC-like protein 1 (40 k... 245 7e-65
Alignment gi|XP_611101.2| PREDICTED: similar to LanC-like protein 2 (Test... 242 6e-64
Alignment gi|XP_597454.2| PREDICTED: similar to LanC lantibiotic syntheta... 144 2e-34
Alignment gi|XP_614740.2| PREDICTED: similar to LanC-like protein 2 (Test... 89 6e-18
>ref|XP_612082.2| PREDICTED: similar to LanC-like protein 1 (40 kDa erythrocyte
membrane protein) (p40) [Bos taurus]
Length = 399
Score = 245 bits (625), Expect = 7e-65
Identities = 107/145 (73%), Positives = 123/145 (84%)
Frame = +2
Query: 14 RFRSGNYPSSLSNETDRLVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGL 193
+F SGNYP + + D L+HWCHGAPGVI+ L QAYKVFKEE+YL DA +C+DVIWQ GL
Sbjct: 255 KFPSGNYPPCVDDSRDLLIHWCHGAPGVIYMLTQAYKVFKEERYLNDAYQCADVIWQYGL 314
Query: 194 LRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFE 373
L+KGYG+CHGTAGN Y+FLSLY LTQD KYLYRACKFAEWCL+YG HGCR PD P+SLFE
Sbjct: 315 LKKGYGLCHGTAGNAYAFLSLYSLTQDAKYLYRACKFAEWCLDYGEHGCRTPDTPFSLFE 374
Query: 374 GMAGAIHFLSDILAPETARFPAFEL 448
GMAG I+FL+D+L P ARFPAFEL
Sbjct: 375 GMAGTIYFLADLLVPTKARFPAFEL 399
>ref|XP_611101.2| PREDICTED: similar to LanC-like protein 2 (Testis-specific
adriamycin sensitivity protein), partial [Bos taurus]
Length = 149
Score = 242 bits (617), Expect = 6e-64
Identities = 114/144 (79%), Positives = 121/144 (84%)
Frame = +2
Query: 53 ETDRLVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLLRKGYGICHGTAG 232
+ D W P + + VFKEEKYL+DAVECSDVIWQRGLLRKGYGICHGTAG
Sbjct: 6 DVDGRAVWNLPLPSTRVGVSELQPVFKEEKYLKDAVECSDVIWQRGLLRKGYGICHGTAG 65
Query: 233 NGYSFLSLYRLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFEGMAGAIHFLSDIL 412
NGYSFLSLY +TQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFEGMAG IHFLSDIL
Sbjct: 66 NGYSFLSLYHITQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFEGMAGTIHFLSDIL 125
Query: 413 APETARFPAFELGSSERDPKVQKD 484
APE +RFPAFEL SS+RD KVQKD
Sbjct: 126 APEASRFPAFELSSSQRDTKVQKD 149
>ref|XP_597454.2| PREDICTED: similar to LanC lantibiotic synthetase component C-like
3 [Bos taurus]
Length = 244
Score = 144 bits (362), Expect = 2e-34
Identities = 69/144 (47%), Positives = 93/144 (64%), Gaps = 4/144 (2%)
Frame = +2
Query: 29 NYPSSLSNETDR---LVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLLR 199
N+P L +R LVHWCHGAPG+ + +AY V K+ +YL + C ++ WQ+GLL+
Sbjct: 99 NWPPELGEAIERENELVHWCHGAPGIAYLFAKAYLVSKKPQYLDTCIRCGELTWQKGLLK 158
Query: 200 KGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCL-EYGAHGCRIPDRPYSLFEG 376
KG GICHG AG+ Y FL LYRLT + KY+YRA +FAE+ E G R+ + YSL+EG
Sbjct: 159 KGPGICHGVAGSAYVFLLLYRLTGNSKYIYRAQRFAEFLFTEEFKAGSRVLESIYSLYEG 218
Query: 377 MAGAIHFLSDILAPETARFPAFEL 448
+G + FL D+L P A FP F +
Sbjct: 219 FSGTVCFLIDLLQPNQAEFPLFSV 242
>ref|XP_614740.2| PREDICTED: similar to LanC-like protein 2 (Testis-specific
adriamycin sensitivity protein), partial [Bos taurus]
Length = 331
Score = 89.4 bits (220), Expect = 6e-18
Identities = 39/41 (95%), Positives = 40/41 (97%)
Frame = +2
Query: 2 MRHKRFRSGNYPSSLSNETDRLVHWCHGAPGVIHTLMQAYK 124
MRHKRFRSGNYPSSLSNETDRLVHWCHGAPGVIH LMQA+K
Sbjct: 291 MRHKRFRSGNYPSSLSNETDRLVHWCHGAPGVIHVLMQAHK 331
Database: RefSeqBP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 16,112,626
Number of sequences in database: 33,508
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,682,224
Number of Sequences: 33508
Number of extensions: 1427212
Number of successful extensions: 5238
Number of sequences better than 1.0e-05: 4
Number of HSP's better than 0.0 without gapping: 4302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5227
length of database: 16,112,626
effective HSP length: 105
effective length of database: 12,594,286
effective search space used: 4584320104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPL01_0057_B02
(1410 letters)
Database: RefSeqCP
33,732 sequences; 19,266,565 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540359.2| PREDICTED: similar to LanC-like protein 2 (Test... 318 6e-87
Alignment gi|XP_536055.1| PREDICTED: similar to LanC-like protein 1 (40 k... 236 3e-62
Alignment gi|XP_548943.2| PREDICTED: similar to LanC lantibiotic syntheta... 144 3e-34
>ref|XP_540359.2| PREDICTED: similar to LanC-like protein 2 (Testis-specific
adriamycin sensitivity protein) [Canis familiaris]
Length = 452
Score = 318 bits (816), Expect = 6e-87
Identities = 146/158 (92%), Positives = 152/158 (96%)
Frame = +2
Query: 2 MRHKRFRSGNYPSSLSNETDRLVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIW 181
+RHKRFRSGNYPSSLSNETDRLVHWCHGAPGVIH LMQAYKVFKEEKYL+DA+ECSDVIW
Sbjct: 295 VRHKRFRSGNYPSSLSNETDRLVHWCHGAPGVIHMLMQAYKVFKEEKYLKDAMECSDVIW 354
Query: 182 QRGLLRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPY 361
QRGLLRKGYGICHGTAGNGYSFLSLY LTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPY
Sbjct: 355 QRGLLRKGYGICHGTAGNGYSFLSLYHLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPY 414
Query: 362 SLFEGMAGAIHFLSDILAPETARFPAFELGSSERDPKV 475
SLFEGMAGAIHFLSDILAPET+RFPAFEL +RD K+
Sbjct: 415 SLFEGMAGAIHFLSDILAPETSRFPAFELAPPQRDRKI 452
>ref|XP_536055.1| PREDICTED: similar to LanC-like protein 1 (40 kDa erythrocyte
membrane protein) (p40) [Canis familiaris]
Length = 399
Score = 236 bits (603), Expect = 3e-62
Identities = 103/145 (71%), Positives = 121/145 (83%)
Frame = +2
Query: 14 RFRSGNYPSSLSNETDRLVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGL 193
+F SGNYP + + D LVHWCHG+PGVI+ L+QAYK F+ E YL DA +C+DVIW+ GL
Sbjct: 255 KFPSGNYPPCVDDNRDLLVHWCHGSPGVIYMLIQAYKAFRGEHYLNDAHQCADVIWRYGL 314
Query: 194 LRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFE 373
LRKGYG+CHGTAGN Y+FL+LY LTQD KYLYRACKFAEWCL+YG HGCR PD P+SLFE
Sbjct: 315 LRKGYGLCHGTAGNAYAFLTLYNLTQDMKYLYRACKFAEWCLDYGEHGCRTPDTPFSLFE 374
Query: 374 GMAGAIHFLSDILAPETARFPAFEL 448
GMAG I+FL+D+L P ARFPAFEL
Sbjct: 375 GMAGTIYFLADLLVPTKARFPAFEL 399
>ref|XP_548943.2| PREDICTED: similar to LanC lantibiotic synthetase component C-like
3 [Canis familiaris]
Length = 420
Score = 144 bits (362), Expect = 3e-34
Identities = 69/144 (47%), Positives = 93/144 (64%), Gaps = 4/144 (2%)
Frame = +2
Query: 29 NYPSSLSNETDR---LVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLLR 199
N+P L +R LVHWCHGAPG+ + +AY V K+ +YL + C ++ WQ+GLL+
Sbjct: 275 NWPPELGEAIERENELVHWCHGAPGIAYLFAKAYLVSKKPQYLDTCIRCGELTWQKGLLK 334
Query: 200 KGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCL-EYGAHGCRIPDRPYSLFEG 376
KG GICHG AG+ Y FL LYRLT + KY+YRA +FAE+ E G R+ + YSL+EG
Sbjct: 335 KGPGICHGVAGSAYVFLLLYRLTGNSKYIYRAQRFAEFLFTEEFKAGSRVLESIYSLYEG 394
Query: 377 MAGAIHFLSDILAPETARFPAFEL 448
+G + FL D+L P A FP F +
Sbjct: 395 FSGTVCFLIDLLQPNQAEFPLFSV 418
Database: RefSeqCP
Posted date: Aug 1, 2006 9:25 PM
Number of letters in database: 19,266,565
Number of sequences in database: 33,732
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,466,624
Number of Sequences: 33732
Number of extensions: 1666341
Number of successful extensions: 5962
Number of sequences better than 1.0e-05: 3
Number of HSP's better than 0.0 without gapping: 4905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5951
length of database: 19,266,565
effective HSP length: 107
effective length of database: 15,657,241
effective search space used: 5667921242
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPL01_0057_B02
(1410 letters)
Database: RefSeqHP
39,411 sequences; 17,774,539 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_061167.1| LanC lantibiotic synthetase component C-like 2 ... 315 5e-86
Alignment gi|NP_006046.1| lanthionine synthetase C-like protein 1 [Homo s... 244 1e-64
Alignment gi|NP_940913.1| LanC lantibiotic synthetase component C-like 3 ... 108 8e-24
>ref|NP_061167.1| LanC lantibiotic synthetase component C-like 2 [Homo sapiens]
Length = 450
Score = 315 bits (808), Expect = 5e-86
Identities = 143/155 (92%), Positives = 152/155 (98%)
Frame = +2
Query: 2 MRHKRFRSGNYPSSLSNETDRLVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIW 181
+RHK+FRSGNYPSSLSNETDRLVHWCHGAPGVIH LMQAYKVFKEEKYL++A+ECSDVIW
Sbjct: 296 VRHKKFRSGNYPSSLSNETDRLVHWCHGAPGVIHMLMQAYKVFKEEKYLKEAMECSDVIW 355
Query: 182 QRGLLRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPY 361
QRGLLRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCL+YGAHGCRIPDRPY
Sbjct: 356 QRGLLRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLDYGAHGCRIPDRPY 415
Query: 362 SLFEGMAGAIHFLSDILAPETARFPAFELGSSERD 466
SLFEGMAGAIHFLSD+L PET+RFPAFEL SS+RD
Sbjct: 416 SLFEGMAGAIHFLSDVLGPETSRFPAFELDSSKRD 450
>ref|NP_006046.1| lanthionine synthetase C-like protein 1 [Homo sapiens]
Length = 399
Score = 244 bits (623), Expect = 1e-64
Identities = 107/145 (73%), Positives = 124/145 (85%)
Frame = +2
Query: 14 RFRSGNYPSSLSNETDRLVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGL 193
+F SGNYP + + D LVHWCHGAPGVI+ L+QAYKVF+EEKYL DA +C+DVIWQ GL
Sbjct: 255 KFPSGNYPPCIGDNRDLLVHWCHGAPGVIYMLIQAYKVFREEKYLCDAYQCADVIWQYGL 314
Query: 194 LRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFE 373
L+KGYG+CHG+AGN Y+FL+LY LTQD KYLYRACKFAEWCLEYG HGCR PD P+SLFE
Sbjct: 315 LKKGYGLCHGSAGNAYAFLTLYNLTQDMKYLYRACKFAEWCLEYGEHGCRTPDTPFSLFE 374
Query: 374 GMAGAIHFLSDILAPETARFPAFEL 448
GMAG I+FL+D+L P ARFPAFEL
Sbjct: 375 GMAGTIYFLADLLVPTKARFPAFEL 399
>ref|NP_940913.1| LanC lantibiotic synthetase component C-like 3 [Homo sapiens]
Length = 388
Score = 108 bits (271), Expect = 8e-24
Identities = 48/92 (52%), Positives = 63/92 (68%), Gaps = 3/92 (3%)
Frame = +2
Query: 29 NYPSSLSNETDR---LVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLLR 199
N+P L +R LVHWCHGAPG+ + +AY V K+ +YL + C ++ WQ+GLL+
Sbjct: 275 NWPPELGETIERENELVHWCHGAPGIAYLFAKAYLVSKKPQYLDTCIRCGELTWQKGLLK 334
Query: 200 KGYGICHGTAGNGYSFLSLYRLTQDKKYLYRA 295
KG GICHG AG+ Y FL LYRLT + KY+YRA
Sbjct: 335 KGPGICHGVAGSAYVFLLLYRLTGNSKYIYRA 366
Database: RefSeqHP
Posted date: Aug 2, 2006 12:57 AM
Number of letters in database: 17,774,539
Number of sequences in database: 39,411
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,956,337
Number of Sequences: 39411
Number of extensions: 1687113
Number of successful extensions: 6205
Number of sequences better than 1.0e-05: 3
Number of HSP's better than 0.0 without gapping: 4928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6176
length of database: 17,774,539
effective HSP length: 106
effective length of database: 13,596,973
effective search space used: 4935701199
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqSP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPL01_0057_B02
(1410 letters)
Database: RefSeqSP
1040 sequences; 434,620 total letters
Searching...done
***** No hits found ******
Database: RefSeqSP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 434,620
Number of sequences in database: 1040
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,371,704
Number of Sequences: 1040
Number of extensions: 36506
Number of successful extensions: 117
Number of sequences better than 1.0e-05: 0
Number of HSP's better than 0.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 434,620
effective HSP length: 80
effective length of database: 351,420
effective search space used: 136702380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPL01_0057_B02
(1410 letters)
Database: RefSeqMP
45,328 sequences; 21,768,885 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598498.1| LanC (bacterial lantibiotic synthetase componen... 310 2e-84
Alignment gi|NP_067270.1| LanC (bacterial lantibiotic synthetase componen... 238 1e-62
Alignment gi|NP_775590.1| LanC lantibiotic synthetase component C-like 3 ... 142 7e-34
Alignment gi|XP_984245.1| PREDICTED: similar to LanC (bacterial lantibiot... 91 4e-18
>ref|NP_598498.1| LanC (bacterial lantibiotic synthetase component C)-like 2 [Mus
musculus]
Length = 450
Score = 310 bits (795), Expect = 2e-84
Identities = 139/155 (89%), Positives = 151/155 (97%)
Frame = +2
Query: 2 MRHKRFRSGNYPSSLSNETDRLVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIW 181
+RHK+FRSGNYPSSLSNETDRLVHWCHGAPGVIH L+QAY+VFKEEKYL++A+ECSDVIW
Sbjct: 296 VRHKKFRSGNYPSSLSNETDRLVHWCHGAPGVIHVLLQAYQVFKEEKYLKEAMECSDVIW 355
Query: 182 QRGLLRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPY 361
QRGLLRKGYGICHGT+GNGYSFLSLYRLTQDKKYLYRACKFAEWCL+YGAHGCRIPDRPY
Sbjct: 356 QRGLLRKGYGICHGTSGNGYSFLSLYRLTQDKKYLYRACKFAEWCLDYGAHGCRIPDRPY 415
Query: 362 SLFEGMAGAIHFLSDILAPETARFPAFELGSSERD 466
SLFEGMAGA+HFLSDIL PETARFPAFELG ++D
Sbjct: 416 SLFEGMAGAVHFLSDILVPETARFPAFELGFLQKD 450
>ref|NP_067270.1| LanC (bacterial lantibiotic synthetase component C)-like 1 [Mus
musculus]
Length = 399
Score = 238 bits (607), Expect = 1e-62
Identities = 105/145 (72%), Positives = 122/145 (84%)
Frame = +2
Query: 14 RFRSGNYPSSLSNETDRLVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGL 193
+F SGNYP L + D LVHWCHGAPGVI+ L+QAYKVFKEE+YL DA +C+DVIWQ GL
Sbjct: 255 KFPSGNYPPCLDDTRDLLVHWCHGAPGVIYMLIQAYKVFKEERYLCDAQQCADVIWQYGL 314
Query: 194 LRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFE 373
L+KGYG+CHG AGN Y+FL+LY LTQD KYLYRACKFAEWCL+YG HGCR D P+SLFE
Sbjct: 315 LKKGYGLCHGAAGNAYAFLALYNLTQDLKYLYRACKFAEWCLDYGEHGCRTADTPFSLFE 374
Query: 374 GMAGAIHFLSDILAPETARFPAFEL 448
GMAG I+FL+D+L P A+FPAFEL
Sbjct: 375 GMAGTIYFLADLLVPTKAKFPAFEL 399
>ref|NP_775590.1| LanC lantibiotic synthetase component C-like 3 [Mus musculus]
Length = 420
Score = 142 bits (359), Expect = 7e-34
Identities = 67/144 (46%), Positives = 93/144 (64%), Gaps = 4/144 (2%)
Frame = +2
Query: 29 NYPSSLSNETDR---LVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLLR 199
N+P L +R LVHWCHGAPG+ + +AY + K+ +YL + C ++ WQ+GLL+
Sbjct: 275 NWPPELGETIERENELVHWCHGAPGIAYLFAKAYLISKKPQYLDTCIRCGELTWQKGLLK 334
Query: 200 KGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCL-EYGAHGCRIPDRPYSLFEG 376
KG GICHG AG+ Y FL LYRLT + KY+YRA +FA++ E G R+ + YSL+EG
Sbjct: 335 KGPGICHGVAGSAYVFLLLYRLTGNSKYIYRAQRFAQFLFTEEFKSGSRVLESIYSLYEG 394
Query: 377 MAGAIHFLSDILAPETARFPAFEL 448
+G + FL D+L P A FP F +
Sbjct: 395 FSGTVCFLIDLLQPNQAEFPLFSV 418
>ref|XP_984245.1| PREDICTED: similar to LanC (bacterial lantibiotic synthetase
component C)-like 2 [Mus musculus]
Length = 390
Score = 90.5 bits (223), Expect = 4e-18
Identities = 60/155 (38%), Positives = 69/155 (44%)
Frame = +2
Query: 2 MRHKRFRSGNYPSSLSNETDRLVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIW 181
+RHK+FRSGNYPSSLSNETDRLVHW
Sbjct: 296 VRHKKFRSGNYPSSLSNETDRLVHW----------------------------------- 320
Query: 182 QRGLLRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPY 361
CHG G + L Y+ + LY C +P R
Sbjct: 321 -----------CHGAPGVIHVLLQAYQRL-NITLLYSIT-------------CVVPKRCT 355
Query: 362 SLFEGMAGAIHFLSDILAPETARFPAFELGSSERD 466
F GMAGA+HFLSDIL PETARFPAFELG ++D
Sbjct: 356 FCFAGMAGAVHFLSDILVPETARFPAFELGFLQKD 390
Database: RefSeqMP
Posted date: Aug 2, 2006 12:58 AM
Number of letters in database: 21,768,885
Number of sequences in database: 45,328
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,304,007
Number of Sequences: 45328
Number of extensions: 1895201
Number of successful extensions: 7078
Number of sequences better than 1.0e-05: 4
Number of HSP's better than 0.0 without gapping: 5664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7035
length of database: 21,768,885
effective HSP length: 107
effective length of database: 16,918,789
effective search space used: 6124601618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)