Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= THY01_0069_G08
(1152 letters)
Database: RefSeqBP
33,508 sequences; 16,112,626 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_584876.2| PREDICTED: similar to THAP domain protein 3 [Bo... 249 4e-66
Alignment gi|NP_001029820.1| hypothetical protein LOC538615 [Bos taurus] 87 3e-17
Alignment gi|XP_600980.2| PREDICTED: similar to THAP domain containing 8 ... 64 2e-10
Alignment gi|XP_617470.2| PREDICTED: similar to THAP domain containing 8 ... 62 7e-10
Alignment gi|NP_001033758.1| THAP domain containing 4 [Bos taurus] 56 5e-08
Alignment gi|XP_585045.2| PREDICTED: similar to THAP domain containing 9 ... 51 2e-06
>ref|XP_584876.2| PREDICTED: similar to THAP domain protein 3 [Bos taurus]
Length = 239
Score = 249 bits (635), Expect = 4e-66
Identities = 126/180 (70%), Positives = 133/180 (73%), Gaps = 1/180 (0%)
Frame = +3
Query: 36 MPKSCAARQCCNRYSSRRKQLTFHRFPFSRPELLKEWVLNIGRGDFEPKQHTVICSEHFR 215
MPKSCAARQCCNRYS+RRKQLTFHRFPFSRPELLKEWVLNIGRGDFEPKQHTVICSEHFR
Sbjct: 1 MPKSCAARQCCNRYSNRRKQLTFHRFPFSRPELLKEWVLNIGRGDFEPKQHTVICSEHFR 60
Query: 216 PECFSAFGNRKNLKHNAVPTEFTFQGPPQLVRETADPDGQIG-AASEKGEVHPETGPSEC 392
PECFSAFGNRKNLKHNAVPT F FQGPPQLVRE DP G+ G A S + +V PETG EC
Sbjct: 61 PECFSAFGNRKNLKHNAVPTVFAFQGPPQLVRENTDPTGRSGDATSGERKVLPETGSGEC 120
Query: 393 GPRRKRDTALEVRQPPPDAGGPRAQGQPGRTGAVAKXXXXXXXXXXXXXXXSTQPPDHSY 572
G RK DT +EV Q PP+ GG AQ P T + TQP DHSY
Sbjct: 121 GLGRKMDTTVEVLQLPPEVGGLGAQ-VPPHTPETSGVPGQPASPPELKRRLPTQPSDHSY 179
>ref|NP_001029820.1| hypothetical protein LOC538615 [Bos taurus]
Length = 213
Score = 86.7 bits (213), Expect = 3e-17
Identities = 42/100 (42%), Positives = 60/100 (60%)
Frame = +3
Query: 36 MPKSCAARQCCNRYSSRRKQLTFHRFPFSRPELLKEWVLNIGRGDFEPKQHTVICSEHFR 215
M +SC+A C NRY + K ++FH+FP +RP L K+W + R +F+P +++ ICSEHF
Sbjct: 1 MVQSCSAYGCKNRYD-KDKPVSFHKFPLTRPSLCKKWEAAVRRKNFKPTKYSSICSEHFT 59
Query: 216 PECFSAFGNRKNLKHNAVPTEFTFQGPPQLVRETADPDGQ 335
P+CF N K LK +AVPT F P + +P Q
Sbjct: 60 PDCFKRECNNKLLKEDAVPTIFLCTEPHDKKEDLLEPQEQ 99
>ref|XP_600980.2| PREDICTED: similar to THAP domain containing 8 [Bos taurus]
Length = 405
Score = 64.3 bits (155), Expect = 2e-10
Identities = 35/109 (32%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Frame = +3
Query: 12 GSRAGRLEMPKSCAARQCCNRY--SSRRKQLTFHRFPFSRPELLKEWVLNIGRGDFEPKQ 185
GS AG MP+ CAA C NR +++ ++L+F+ FP E L++W+ N+ R + P +
Sbjct: 287 GSAAG---MPRYCAAICCKNRRGRNNKERKLSFYPFPLHDKERLEKWLKNMKRDSWVPSK 343
Query: 186 HTVICSEHFRPECFSAFGNRKNLKHNAVPTEFTFQGPPQLVRETADPDG 332
+ +CS+HF P+ + LK A+PT F Q++ + +G
Sbjct: 344 YQFLCSDHFTPDSLDIRWGIRYLKQTAIPTIFALPEDNQVLEAGSRGEG 392
>ref|XP_617470.2| PREDICTED: similar to THAP domain containing 8 [Bos taurus]
Length = 259
Score = 62.4 bits (150), Expect = 7e-10
Identities = 49/166 (29%), Positives = 71/166 (42%), Gaps = 15/166 (9%)
Frame = +3
Query: 36 MPKSCAARQCCN---RYSSRRKQLTFHRFPFSRPELLKEWVLNIGRGDFEPKQHTVICSE 206
MPK C A C N + + + ++F++FP L+ W+ ++GR + P H +CSE
Sbjct: 1 MPKYCLAPNCSNTAGQLGADNRPVSFYKFPLKDGPRLQAWLRHMGREHWVPSCHQHLCSE 60
Query: 207 HFRPECFSAFGNRKNLKHNAVPTEFTFQGPPQ-------LVRETADPDGQIGAASEKGEV 365
HF P CF + L+ +AVP+ F+ P Q + P Q + G V
Sbjct: 61 HFAPSCFQWRWGVRYLRPDAVPSIFSRVPPAQRQQSSRSTEKPVVPPPLQATPSLASGPV 120
Query: 366 H-----PETGPSECGPRRKRDTALEVRQPPPDAGGPRAQGQPGRTG 488
P +G E P T L + QP P P A Q R G
Sbjct: 121 QLLVLGPASGAPE-APATVFLTPLSL-QPAPAGPRPGASAQHPRAG 164
>ref|NP_001033758.1| THAP domain containing 4 [Bos taurus]
Length = 570
Score = 56.2 bits (134), Expect = 5e-08
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Frame = +3
Query: 48 CAARQCCNRYSSRRKQ-LTFHRFPFSRPELLKEWVLNIGRGDFEPKQHTVICSEHFRPEC 224
CAA C NR K+ ++FHRFP + L +W+ + R ++ P +++ +CSEHF +
Sbjct: 5 CAAANCSNRQGKGEKRAVSFHRFPLKDSKRLMQWLKAVQRDNWTPTKYSFLCSEHFTKDS 64
Query: 225 FS--AFGNRKNLKHNAVPTEF 281
FS + LK AVP+ F
Sbjct: 65 FSKRLEDQHRLLKPTAVPSIF 85
>ref|XP_585045.2| PREDICTED: similar to THAP domain containing 9 [Bos taurus]
Length = 246
Score = 50.8 bits (120), Expect = 2e-06
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Frame = +3
Query: 36 MPKSCAARQCCNRYS--SRRKQLTFHRFPFSRPELLKEWVLNIGRGD------FEPKQHT 191
M +SC+A C R + SR + L+FH+FP + K W+ + R D + P
Sbjct: 1 MTRSCSAVGCSTRDTVLSRERGLSFHQFPTDTIQRSK-WIRAVNRMDPRSKKIWIPGPGA 59
Query: 192 VICSEHFRPECFSAFGNRKNLKHNAVPT 275
++CS+HF+ F ++G R+ LK AVP+
Sbjct: 60 MLCSKHFQESDFESYGIRRKLKKGAVPS 87
Database: RefSeqBP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 16,112,626
Number of sequences in database: 33,508
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,004,898
Number of Sequences: 33508
Number of extensions: 1083794
Number of successful extensions: 9122
Number of sequences better than 1.0e-05: 6
Number of HSP's better than 0.0 without gapping: 5377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8803
length of database: 16,112,626
effective HSP length: 103
effective length of database: 12,661,302
effective search space used: 3545164560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= THY01_0069_G08
(1152 letters)
Database: RefSeqCP
33,732 sequences; 19,266,565 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_849390.1| PREDICTED: similar to THAP domain protein 3 iso... 215 7e-56
Alignment gi|XP_858681.1| PREDICTED: similar to THAP domain protein 3 iso... 197 1e-50
Alignment gi|XP_848435.1| PREDICTED: similar to THAP domain protein 1 iso... 89 6e-18
Alignment gi|XP_532789.1| PREDICTED: similar to THAP domain protein 1 iso... 86 5e-17
Alignment gi|XP_541680.2| PREDICTED: similar to CLIP-170-related protein ... 65 1e-10
Alignment gi|XP_539521.2| PREDICTED: similar to THAP domain containing 5 ... 62 1e-09
Alignment gi|XP_543564.2| PREDICTED: similar to THAP domain protein 7 [Ca... 53 5e-07
Alignment gi|XP_544956.2| PREDICTED: similar to THAP domain containing 9 ... 52 1e-06
Alignment gi|XP_855909.1| PREDICTED: similar to THAP domain containing 6 ... 50 4e-06
Alignment gi|XP_544933.1| PREDICTED: similar to THAP domain containing 6 ... 49 9e-06
>ref|XP_849390.1| PREDICTED: similar to THAP domain protein 3 isoform 1 [Canis
familiaris]
Length = 225
Score = 215 bits (547), Expect = 7e-56
Identities = 125/234 (53%), Positives = 131/234 (55%), Gaps = 2/234 (0%)
Frame = +3
Query: 36 MPKSCAARQCCNRYSSRRKQLTFHRFPFSRPELLKEWVLNIGRGDFEPKQHTVICSEHFR 215
MPKSCAARQCCNRYSSRRKQLTFHRFPFSRPELLKEWVLNIGR +F+PKQHTVICSEHFR
Sbjct: 1 MPKSCAARQCCNRYSSRRKQLTFHRFPFSRPELLKEWVLNIGRANFKPKQHTVICSEHFR 60
Query: 216 PECFSAFGNRKNLKHNAVPTEFTFQGPPQLVRETADP-DGQIGAASEKG-EVHPETGPSE 389
PECFSAFGNRKNLK NAVPT F FQ QL RE ADP G S K V E P+E
Sbjct: 61 PECFSAFGNRKNLKQNAVPTVFAFQDATQLARENADPAGGDTNVDSHKEVSVASEVVPAE 120
Query: 390 CGPRRKRDTALEVRQPPPDAGGPRAQGQPGRTGAVAKXXXXXXXXXXXXXXXSTQPPDHS 569
CG RK + ALEV PP A GP Q P R Q DHS
Sbjct: 121 CGWGRKLEAALEVL--PPMASGPAEQVVPRR-------LQGTQAPAQQASPSPAQTSDHS 171
Query: 570 YXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMASHLQACRAGSRPEQQS 731
Y M+S L+A RAG PE QS
Sbjct: 172 YALLDLDALKKKLFLTLKENEKLRKRLKAQRLVIRRMSSRLRAHRAGPPPEPQS 225
>ref|XP_858681.1| PREDICTED: similar to THAP domain protein 3 isoform 2 [Canis
familiaris]
Length = 203
Score = 197 bits (502), Expect = 1e-50
Identities = 115/232 (49%), Positives = 122/232 (52%)
Frame = +3
Query: 36 MPKSCAARQCCNRYSSRRKQLTFHRFPFSRPELLKEWVLNIGRGDFEPKQHTVICSEHFR 215
MPKSCAARQCCNRYSSRRKQLTFHRFPFSRPELLKEWVLNIGR +F+PKQHTVICSEHFR
Sbjct: 1 MPKSCAARQCCNRYSSRRKQLTFHRFPFSRPELLKEWVLNIGRANFKPKQHTVICSEHFR 60
Query: 216 PECFSAFGNRKNLKHNAVPTEFTFQGPPQLVRETADPDGQIGAASEKGEVHPETGPSECG 395
PECFSAFGNRKNLK NAVPT F FQ Q+ E P+ECG
Sbjct: 61 PECFSAFGNRKNLKQNAVPTVFAFQDATQVASEVV--------------------PAECG 100
Query: 396 PRRKRDTALEVRQPPPDAGGPRAQGQPGRTGAVAKXXXXXXXXXXXXXXXSTQPPDHSYX 575
RK + ALEV PP A GP Q P R Q DHSY
Sbjct: 101 WGRKLEAALEVL--PPMASGPAEQVVPRR-------LQGTQAPAQQASPSPAQTSDHSYA 151
Query: 576 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMASHLQACRAGSRPEQQS 731
M+S L+A RAG PE QS
Sbjct: 152 LLDLDALKKKLFLTLKENEKLRKRLKAQRLVIRRMSSRLRAHRAGPPPEPQS 203
>ref|XP_848435.1| PREDICTED: similar to THAP domain protein 1 isoform 2 [Canis
familiaris]
Length = 213
Score = 89.4 bits (220), Expect = 6e-18
Identities = 43/101 (42%), Positives = 61/101 (60%)
Frame = +3
Query: 36 MPKSCAARQCCNRYSSRRKQLTFHRFPFSRPELLKEWVLNIGRGDFEPKQHTVICSEHFR 215
M +SC+A C NRY + K ++FH+FP +RP L K+W + R +F+P +++ ICSEHF
Sbjct: 1 MVQSCSAYGCKNRYD-KDKPVSFHKFPLTRPSLCKKWEAAVRRKNFKPTKYSSICSEHFT 59
Query: 216 PECFSAFGNRKNLKHNAVPTEFTFQGPPQLVRETADPDGQI 338
P+CF N K LK NAVPT F P + +P Q+
Sbjct: 60 PDCFKRECNNKLLKENAVPTIFLCTEPHDKKEDLLEPQEQL 100
>ref|XP_532789.1| PREDICTED: similar to THAP domain protein 1 isoform 1 [Canis
familiaris]
Length = 178
Score = 86.3 bits (212), Expect = 5e-17
Identities = 41/87 (47%), Positives = 56/87 (64%)
Frame = +3
Query: 36 MPKSCAARQCCNRYSSRRKQLTFHRFPFSRPELLKEWVLNIGRGDFEPKQHTVICSEHFR 215
M +SC+A C NRY + K ++FH+FP +RP L K+W + R +F+P +++ ICSEHF
Sbjct: 1 MVQSCSAYGCKNRYD-KDKPVSFHKFPLTRPSLCKKWEAAVRRKNFKPTKYSSICSEHFT 59
Query: 216 PECFSAFGNRKNLKHNAVPTEFTFQGP 296
P+CF N K LK NAVPT F P
Sbjct: 60 PDCFKRECNNKLLKENAVPTIFLCTEP 86
>ref|XP_541680.2| PREDICTED: similar to CLIP-170-related protein [Canis familiaris]
Length = 871
Score = 65.1 bits (157), Expect = 1e-10
Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 3/146 (2%)
Frame = +3
Query: 36 MPKSCAARQCCN---RYSSRRKQLTFHRFPFSRPELLKEWVLNIGRGDFEPKQHTVICSE 206
MPK C A C N R + + ++F++FP L+ W+ ++G D+ P H +CSE
Sbjct: 1 MPKYCRAPNCSNTAGRLGADNRPVSFYKFPLKDGPRLQAWLRHMGHEDWVPSCHHHLCSE 60
Query: 207 HFRPECFSAFGNRKNLKHNAVPTEFTFQGPPQLVRETADPDGQIGAASEKGEVHPETGPS 386
HF P CF + L+ +AVP+ F+ P + + + + + + S PE P
Sbjct: 61 HFTPSCFQWRWGVRYLRPDAVPSIFSPAPPAKRQQSSRSTEKPVESPSS-----PEAMPL 115
Query: 387 ECGPRRKRDTALEVRQPPPDAGGPRA 464
P + + +GGP A
Sbjct: 116 SPDPTVSASGPMHLAVLGSASGGPEA 141
>ref|XP_539521.2| PREDICTED: similar to THAP domain containing 5 [Canis familiaris]
Length = 394
Score = 62.0 bits (149), Expect = 1e-09
Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Frame = +3
Query: 36 MPKSCAARQCCNRY--SSRRKQLTFHRFPFSRPELLKEWVLNIGRGDFEPKQHTVICSEH 209
MP+ CAA C NR +S+ ++L+F+ FP E L++W+ N+ R + P ++ +CS+H
Sbjct: 1 MPRYCAAICCKNRRGRNSKDRKLSFYPFPLHDKERLEKWLKNMKRDSWVPSKYQFLCSDH 60
Query: 210 FRPECFSAFGNRKNLKHNAVPTEFT 284
F P+ + LK A+PT F+
Sbjct: 61 FTPDSLDIRWGIRYLKQTAIPTIFS 85
>ref|XP_543564.2| PREDICTED: similar to THAP domain protein 7 [Canis familiaris]
Length = 313
Score = 53.1 bits (126), Expect = 5e-07
Identities = 46/155 (29%), Positives = 64/155 (41%), Gaps = 17/155 (10%)
Frame = +3
Query: 36 MPKSCAARQCCNRYS--SRRKQLTFHRFPFSRPELLKEWVLNI------GRGDFEP-KQH 188
MP+ C+A CC R + +R + ++FHR P W+ N G+G ++P ++
Sbjct: 1 MPRHCSAAGCCTRDTRETRNRGISFHRLPKKDNPRRGLWLANCQRLDPSGQGLWDPASEY 60
Query: 189 TVICSEHFRPECFSAFG--NRKNLKHNAVPTEFTFQGPPQLVRETADPDGQIGAASEKGE 362
CS+HF CF G LK AVPT F+ +L R T KG
Sbjct: 61 IYFCSKHFEENCFELVGISGYHRLKEGAVPT--IFESFSKLRRTT----------KTKGH 108
Query: 363 VHPETGPSECGPRRKRDTALEVR------QPPPDA 449
+P P RR R + R PPP A
Sbjct: 109 SYPPGPPDISRLRRCRKRCSDSRGPTTPFSPPPPA 143
>ref|XP_544956.2| PREDICTED: similar to THAP domain containing 9 [Canis familiaris]
Length = 902
Score = 51.6 bits (122), Expect = 1e-06
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Frame = +3
Query: 36 MPKSCAARQCCNRYS--SRRKQLTFHRFPFSRPELLKEWVLNIGRGD------FEPKQHT 191
M +SC+A C R + SR + L+FH+FP + K W+ + R D + P
Sbjct: 1 MTRSCSAVGCSTRDTVLSRERGLSFHQFPTDTIQRSK-WIRAVNRVDPRSKKIWIPGPGA 59
Query: 192 VICSEHFRPECFSAFGNRKNLKHNAVPT 275
++CS+HF+ F ++G R+ LK AVP+
Sbjct: 60 ILCSKHFQESDFESYGIRRKLKKGAVPS 87
>ref|XP_855909.1| PREDICTED: similar to THAP domain containing 6 isoform 4 [Canis
familiaris]
Length = 180
Score = 50.1 bits (118), Expect = 4e-06
Identities = 35/101 (34%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Frame = +3
Query: 36 MPKSCAARQCCNRY--SSRRKQLTFHRFPFSRPELLKEWVLNIGR------GDFEPKQHT 191
M K C+A C +R +S+ K LTFH FP + ++WVL + R G +EPK+
Sbjct: 1 MVKCCSAIGCASRCLPNSKLKGLTFHVFPTDE-NVKRKWVLAMKRLDVNAAGIWEPKKGD 59
Query: 192 VICSEHFRPECFSAFGNRKNLKHNAVPTEFTFQGPPQLVRE 314
V+CS HF+ F LK +P+ F PP ++E
Sbjct: 60 VLCSRHFKKTDFDRSTPNIKLKPGVIPSIF---DPPSHLQE 97
>ref|XP_544933.1| PREDICTED: similar to THAP domain containing 6 isoform 1 [Canis
familiaris]
Length = 222
Score = 48.9 bits (115), Expect = 9e-06
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Frame = +3
Query: 36 MPKSCAARQCCNRY--SSRRKQLTFHRFPFSRPELLKEWVLNIGR------GDFEPKQHT 191
M K C+A C +R +S+ K LTFH FP + ++WVL + R G +EPK+
Sbjct: 1 MVKCCSAIGCASRCLPNSKLKGLTFHVFPTDE-NVKRKWVLAMKRLDVNAAGIWEPKKGD 59
Query: 192 VICSEHFRPECFSAFGNRKNLKHNAVPTEF 281
V+CS HF+ F LK +P+ F
Sbjct: 60 VLCSRHFKKTDFDRSTPNIKLKPGVIPSIF 89
Database: RefSeqCP
Posted date: Aug 1, 2006 9:25 PM
Number of letters in database: 19,266,565
Number of sequences in database: 33,732
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,665,907
Number of Sequences: 33732
Number of extensions: 1279510
Number of successful extensions: 11061
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 6340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10655
length of database: 19,266,565
effective HSP length: 105
effective length of database: 15,724,705
effective search space used: 4371467990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= THY01_0069_G08
(1152 letters)
Database: RefSeqHP
39,411 sequences; 17,774,539 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_612359.2| THAP domain containing, apoptosis associated pr... 218 6e-57
Alignment gi|NP_060575.1| THAP domain containing, apoptosis associated pr... 91 2e-18
Alignment gi|NP_113623.1| THAP domain containing, apoptosis associated pr... 77 4e-14
Alignment gi|NP_689871.1| THAP domain containing 8 [Homo sapiens] 62 1e-09
Alignment gi|NP_057047.3| THAP domain containing 4 [Homo sapiens] 55 1e-07
Alignment gi|NP_001008695.1| THAP domain containing 7 isoform a [Homo sap... 54 2e-07
Alignment gi|NP_085050.2| THAP domain containing 7 isoform a [Homo sapiens] 54 2e-07
Alignment gi|NP_078948.3| THAP domain containing 9 [Homo sapiens] 52 7e-07
Alignment gi|NP_653322.1| THAP domain containing 6 [Homo sapiens] 50 4e-06
>ref|NP_612359.2| THAP domain containing, apoptosis associated protein 3 [Homo
sapiens]
Length = 175
Score = 218 bits (556), Expect = 6e-57
Identities = 108/149 (72%), Positives = 114/149 (76%), Gaps = 9/149 (6%)
Frame = +3
Query: 36 MPKSCAARQCCNRYSSRRKQLTFHRFPFSRPELLKEWVLNIGRGDFEPKQHTVICSEHFR 215
MPKSCAARQCCNRYSSRRKQLTFHRFPFSRPELLKEWVLNIGRG+F+PKQHTVICSEHFR
Sbjct: 1 MPKSCAARQCCNRYSSRRKQLTFHRFPFSRPELLKEWVLNIGRGNFKPKQHTVICSEHFR 60
Query: 216 PECFSAFGNRKNLKHNAVPTEFTFQGPPQLVRETADPDGQIGAASE---------KGEVH 368
PECFSAFGNRKNLKHNAVPT F FQ P Q VRE DP + G AS + +V
Sbjct: 61 PECFSAFGNRKNLKHNAVPTVFAFQDPTQQVRENTDPASERGNASSSQKEKTSPCRSQVL 120
Query: 369 PETGPSECGPRRKRDTALEVRQPPPDAGG 455
PE G E P R DTALE Q PP+A G
Sbjct: 121 PEAGAGEDSPGRNMDTALEELQLPPNAEG 149
>ref|NP_060575.1| THAP domain containing, apoptosis associated protein 1 isoform 1
[Homo sapiens]
Length = 213
Score = 90.9 bits (224), Expect = 2e-18
Identities = 44/101 (43%), Positives = 61/101 (60%)
Frame = +3
Query: 36 MPKSCAARQCCNRYSSRRKQLTFHRFPFSRPELLKEWVLNIGRGDFEPKQHTVICSEHFR 215
M +SC+A C NRY + K ++FH+FP +RP L KEW + R +F+P +++ ICSEHF
Sbjct: 1 MVQSCSAYGCKNRYD-KDKPVSFHKFPLTRPSLCKEWEAAVRRKNFKPTKYSSICSEHFT 59
Query: 216 PECFSAFGNRKNLKHNAVPTEFTFQGPPQLVRETADPDGQI 338
P+CF N K LK NAVPT F P + +P Q+
Sbjct: 60 PDCFKRECNNKLLKENAVPTIFLCTEPHDKKEDLLEPQEQL 100
>ref|NP_113623.1| THAP domain containing, apoptosis associated protein 2 [Homo
sapiens]
Length = 228
Score = 76.6 bits (187), Expect = 4e-14
Identities = 37/84 (44%), Positives = 50/84 (59%)
Frame = +3
Query: 36 MPKSCAARQCCNRYSSRRKQLTFHRFPFSRPELLKEWVLNIGRGDFEPKQHTVICSEHFR 215
MP +CAA C Y+ + ++FHRFP P+ KEWV + R +F P +HT +CS+HF
Sbjct: 1 MPTNCAAAGCATTYN-KHINISFHRFPLD-PKRRKEWVRLVRRKNFVPGKHTFLCSKHFE 58
Query: 216 PECFSAFGNRKNLKHNAVPTEFTF 287
CF G + LK +AVPT F F
Sbjct: 59 ASCFDLTGQTRRLKMDAVPTIFDF 82
>ref|NP_689871.1| THAP domain containing 8 [Homo sapiens]
Length = 274
Score = 61.6 bits (148), Expect = 1e-09
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Frame = +3
Query: 36 MPKSCAARQCCN---RYSSRRKQLTFHRFPFSRPELLKEWVLNIGRGDFEPKQHTVICSE 206
MPK C A C N R + + ++F++FP L+ W+ ++G + P H +CSE
Sbjct: 1 MPKYCRAPNCSNTAGRLGADNRPVSFYKFPLKDGPRLQAWLQHMGCEHWVPSCHQHLCSE 60
Query: 207 HFRPECFSAFGNRKNLKHNAVPTEFTFQGPP 299
HF P CF + L+ +AVP+ F+ +GPP
Sbjct: 61 HFTPSCFQWRWGVRYLRPDAVPSIFS-RGPP 90
>ref|NP_057047.3| THAP domain containing 4 [Homo sapiens]
Length = 577
Score = 54.7 bits (130), Expect = 1e-07
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Frame = +3
Query: 48 CAARQCCNRYSSRRKQ-LTFHRFPFSRPELLKEWVLNIGRGDFEPKQHTVICSEHFRPEC 224
CAA C NR K+ ++FHRFP + L +W+ + R ++ P +++ +CSEHF +
Sbjct: 5 CAAVNCSNRQGKGEKRAVSFHRFPLKDSKRLIQWLKAVQRDNWTPTKYSFLCSEHFTKDS 64
Query: 225 FS--AFGNRKNLKHNAVPTEF 281
FS + LK AVP+ F
Sbjct: 65 FSKRLEDQHRLLKPTAVPSIF 85
>ref|NP_001008695.1| THAP domain containing 7 isoform a [Homo sapiens]
Length = 309
Score = 53.9 bits (128), Expect = 2e-07
Identities = 49/156 (31%), Positives = 68/156 (43%), Gaps = 18/156 (11%)
Frame = +3
Query: 36 MPKSCAARQCCNRYS--SRRKQLTFHRFPFSRPELLKEWVLNI------GRGDFEP-KQH 188
MP+ C+A CC R + +R + ++FHR P W+ N G+G ++P ++
Sbjct: 1 MPRHCSAAGCCTRDTRETRNRGISFHRLPKKDNPRRGLWLANCQRLDPSGQGLWDPASEY 60
Query: 189 TVICSEHFRPECFSAFG--NRKNLKHNAVPTEFTFQGPPQLVRETADPDGQIGAASEKGE 362
CS+HF +CF G LK AVPT F+ +L R T KG
Sbjct: 61 IYFCSKHFEEDCFELVGISGYHRLKEGAVPT--IFESFSKLRRTT----------KTKGH 108
Query: 363 VHPETGPSECGP-RRKRDTALEVR------QPPPDA 449
+P GP+E RR R E R PPP A
Sbjct: 109 SYP-PGPAEVSRLRRCRKRCSEGRGPTTPFSPPPPA 143
>ref|NP_085050.2| THAP domain containing 7 isoform a [Homo sapiens]
Length = 309
Score = 53.9 bits (128), Expect = 2e-07
Identities = 49/156 (31%), Positives = 68/156 (43%), Gaps = 18/156 (11%)
Frame = +3
Query: 36 MPKSCAARQCCNRYS--SRRKQLTFHRFPFSRPELLKEWVLNI------GRGDFEP-KQH 188
MP+ C+A CC R + +R + ++FHR P W+ N G+G ++P ++
Sbjct: 1 MPRHCSAAGCCTRDTRETRNRGISFHRLPKKDNPRRGLWLANCQRLDPSGQGLWDPASEY 60
Query: 189 TVICSEHFRPECFSAFG--NRKNLKHNAVPTEFTFQGPPQLVRETADPDGQIGAASEKGE 362
CS+HF +CF G LK AVPT F+ +L R T KG
Sbjct: 61 IYFCSKHFEEDCFELVGISGYHRLKEGAVPT--IFESFSKLRRTT----------KTKGH 108
Query: 363 VHPETGPSECGP-RRKRDTALEVR------QPPPDA 449
+P GP+E RR R E R PPP A
Sbjct: 109 SYP-PGPAEVSRLRRCRKRCSEGRGPTTPFSPPPPA 143
>ref|NP_078948.3| THAP domain containing 9 [Homo sapiens]
Length = 903
Score = 52.4 bits (124), Expect = 7e-07
Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 8/95 (8%)
Frame = +3
Query: 36 MPKSCAARQCCNRYS--SRRKQLTFHRFPFSRPELLKEWVLNIGRGD------FEPKQHT 191
M +SC+A C R + SR + L+FH+FP + K W+ + R D + P
Sbjct: 1 MTRSCSAVGCSTRDTVLSRERGLSFHQFPTDTIQRSK-WIRAVNRVDPRSKKIWIPGPGA 59
Query: 192 VICSEHFRPECFSAFGNRKNLKHNAVPTEFTFQGP 296
++CS+HF+ F ++G R+ LK AVP+ ++ P
Sbjct: 60 ILCSKHFQESDFESYGIRRKLKKGAVPSVSLYKIP 94
>ref|NP_653322.1| THAP domain containing 6 [Homo sapiens]
Length = 222
Score = 50.1 bits (118), Expect = 4e-06
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Frame = +3
Query: 36 MPKSCAARQCCNRY--SSRRKQLTFHRFPFSRPELLKEWVLNIGR------GDFEPKQHT 191
M K C+A C +R +S+ K LTFH FP + ++WVL + R G +EPK+
Sbjct: 1 MVKCCSAIGCASRCLPNSKLKGLTFHVFPTDE-NIKRKWVLAMKRLDVNAAGIWEPKKGD 59
Query: 192 VICSEHFRPECFSAFGNRKNLKHNAVPTEF 281
V+CS HF+ F LK +P+ F
Sbjct: 60 VLCSRHFKKTDFDRSAPNIKLKPGVIPSIF 89
Database: RefSeqHP
Posted date: Aug 2, 2006 12:57 AM
Number of letters in database: 17,774,539
Number of sequences in database: 39,411
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,004,853
Number of Sequences: 39411
Number of extensions: 1324378
Number of successful extensions: 12494
Number of sequences better than 1.0e-05: 9
Number of HSP's better than 0.0 without gapping: 6595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12058
length of database: 17,774,539
effective HSP length: 104
effective length of database: 13,675,795
effective search space used: 3815546805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqSP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= THY01_0069_G08
(1152 letters)
Database: RefSeqSP
1040 sequences; 434,620 total letters
Searching...done
***** No hits found ******
Database: RefSeqSP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 434,620
Number of sequences in database: 1040
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 997,146
Number of Sequences: 1040
Number of extensions: 25551
Number of successful extensions: 211
Number of sequences better than 1.0e-05: 0
Number of HSP's better than 0.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 434,620
effective HSP length: 78
effective length of database: 353,500
effective search space used: 107817500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= THY01_0069_G08
(1152 letters)
Database: RefSeqMP
45,328 sequences; 21,768,885 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_780361.1| THAP domain containing, apoptosis associated pr... 191 2e-48
Alignment gi|NP_950243.1| THAP domain containing, apoptosis associated pr... 90 5e-18
Alignment gi|NP_080056.1| THAP domain containing, apoptosis associated pr... 76 8e-14
Alignment gi|NP_080196.3| THAP domain containing 4 [Mus musculus] 55 1e-07
Alignment gi|NP_081185.1| THAP domain containing 7 [Mus musculus] 52 9e-07
>ref|NP_780361.1| THAP domain containing, apoptosis associated protein 3 [Mus
musculus]
Length = 218
Score = 191 bits (484), Expect = 2e-48
Identities = 99/149 (66%), Positives = 101/149 (67%)
Frame = +3
Query: 36 MPKSCAARQCCNRYSSRRKQLTFHRFPFSRPELLKEWVLNIGRGDFEPKQHTVICSEHFR 215
MPKSCAARQCCNRYSSRRKQLTFHRFPFSRPELL+EWVLNIGR DF+PKQHTVICSEHFR
Sbjct: 1 MPKSCAARQCCNRYSSRRKQLTFHRFPFSRPELLREWVLNIGRADFKPKQHTVICSEHFR 60
Query: 216 PECFSAFGNRKNLKHNAVPTEFTFQGPPQLVRETADPDGQIGAASEKGEVHPETGPSECG 395
PECFSAFGNRKNLKHNAVPT F FQ P EV PE G
Sbjct: 61 PECFSAFGNRKNLKHNAVPTVFAFQNPT--------------------EVCPEVGAGGDS 100
Query: 396 PRRKRDTALEVRQPPPDAGGPRAQGQPGR 482
R DT LE QPP GP Q P R
Sbjct: 101 SGRNMDTTLEELQPPTPE-GPVQQVLPDR 128
>ref|NP_950243.1| THAP domain containing, apoptosis associated protein 1 [Mus
musculus]
Length = 210
Score = 89.7 bits (221), Expect = 5e-18
Identities = 51/135 (37%), Positives = 73/135 (54%)
Frame = +3
Query: 36 MPKSCAARQCCNRYSSRRKQLTFHRFPFSRPELLKEWVLNIGRGDFEPKQHTVICSEHFR 215
M +SC+A C NRY + K ++FH+FP +RP L K+W + R +F+P +++ ICSEHF
Sbjct: 1 MVQSCSAYGCKNRYD-KDKPVSFHKFPLTRPSLCKQWEAAVKRKNFKPTKYSSICSEHFT 59
Query: 216 PECFSAFGNRKNLKHNAVPTEFTFQGPPQLVRETADPDGQIGAASEKGEVHPETGPSECG 395
P+CF N K LK NAVPT F + P + + D + Q E PS
Sbjct: 60 PDCFKRECNNKLLKENAVPTIFLYIEPHE---KKEDLESQ------------EQLPSPSP 104
Query: 396 PRRKRDTALEVRQPP 440
P + D A+ + PP
Sbjct: 105 PASQVDAAIGLLMPP 119
>ref|NP_080056.1| THAP domain containing, apoptosis associated protein 2 [Mus
musculus]
Length = 217
Score = 75.9 bits (185), Expect = 8e-14
Identities = 37/84 (44%), Positives = 50/84 (59%)
Frame = +3
Query: 36 MPKSCAARQCCNRYSSRRKQLTFHRFPFSRPELLKEWVLNIGRGDFEPKQHTVICSEHFR 215
MP +CAA C Y+ + ++FHRFP P+ KEWV + R +F P +HT +CS+HF
Sbjct: 1 MPTNCAAAGCAATYN-KHINISFHRFPLD-PKRRKEWVRLVRRKNFVPGKHTFLCSKHFE 58
Query: 216 PECFSAFGNRKNLKHNAVPTEFTF 287
CF G + LK +AVPT F F
Sbjct: 59 ASCFDLTGQTRRLKMDAVPTIFDF 82
>ref|NP_080196.3| THAP domain containing 4 [Mus musculus]
Length = 569
Score = 55.5 bits (132), Expect = 1e-07
Identities = 40/145 (27%), Positives = 63/145 (43%), Gaps = 11/145 (7%)
Frame = +3
Query: 48 CAARQCCNRYSSRRKQ-LTFHRFPFSRPELLKEWVLNIGRGDFEPKQHTVICSEHFRPEC 224
CAA C NR K+ ++FHRFP + L +W+ + R ++ P +++ +CSEHF +
Sbjct: 5 CAAVNCSNRQGKGEKRAVSFHRFPLKDSKRLIQWLKAVQRDNWTPTKYSFLCSEHFTKDS 64
Query: 225 FS--AFGNRKNLKHNAVPTEFTFQGPPQLV--------RETADPDGQIGAASEKGEVHPE 374
FS + LK AVP+ F + + TA G A + KG +
Sbjct: 65 FSKRLEDQHRLLKPTAVPSIFHLSEKKRGAGGHGHARRKTTAAMRGHTSAETGKGTIGSS 124
Query: 375 TGPSECGPRRKRDTALEVRQPPPDA 449
S+ + L+ P DA
Sbjct: 125 LSSSDNLMAKPESRKLKRASPQDDA 149
>ref|NP_081185.1| THAP domain containing 7 [Mus musculus]
Length = 309
Score = 52.4 bits (124), Expect = 9e-07
Identities = 47/155 (30%), Positives = 66/155 (42%), Gaps = 12/155 (7%)
Frame = +3
Query: 36 MPKSCAARQCCNRYS--SRRKQLTFHRFPFSRPELLKEWVLNI------GRGDFEP-KQH 188
MP+ C+A CC R + +R + ++FHR P W+ N G+G ++P ++
Sbjct: 1 MPRHCSAAGCCTRDTRETRNRGISFHRLPKKDNPRRGLWLANCQRLDPSGQGLWDPTSEY 60
Query: 189 TVICSEHFRPECFSAFG--NRKNLKHNAVPTEFTFQGPPQLVRETADPDGQIGAASEKGE 362
CS+HF CF G LK AVPT F+ +L R A KG
Sbjct: 61 IYFCSKHFEENCFELVGISGYHRLKEGAVPT--IFESFSKLRR----------TAKTKGH 108
Query: 363 VHPETGPSECGPRRKRDTALEVRQP-PPDAGGPRA 464
+P P RR R E + P P + PRA
Sbjct: 109 GYPPGLPDVSRLRRCRKRCSERQGPTTPFSPPPRA 143
Database: RefSeqMP
Posted date: Aug 2, 2006 12:58 AM
Number of letters in database: 21,768,885
Number of sequences in database: 45,328
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,487,437
Number of Sequences: 45328
Number of extensions: 1397427
Number of successful extensions: 11414
Number of sequences better than 1.0e-05: 5
Number of HSP's better than 0.0 without gapping: 6747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11044
length of database: 21,768,885
effective HSP length: 105
effective length of database: 17,009,445
effective search space used: 4728625710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)