Animal-Genome cDNA THY01_0069_G08


Search to RefSeqBP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= THY01_0069_G08
         (1152 letters)

Database: RefSeqBP 
           33,508 sequences; 16,112,626 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_584876.2| PREDICTED: similar to THAP domain protein 3 [Bo...   249   4e-66
Alignment   gi|NP_001029820.1| hypothetical protein LOC538615 [Bos taurus]        87   3e-17
Alignment   gi|XP_600980.2| PREDICTED: similar to THAP domain containing 8 ...    64   2e-10
Alignment   gi|XP_617470.2| PREDICTED: similar to THAP domain containing 8 ...    62   7e-10
Alignment   gi|NP_001033758.1| THAP domain containing 4 [Bos taurus]              56   5e-08
Alignment   gi|XP_585045.2| PREDICTED: similar to THAP domain containing 9 ...    51   2e-06

>ref|XP_584876.2| PREDICTED: similar to THAP domain protein 3 [Bos taurus]
          Length = 239

 Score =  249 bits (635), Expect = 4e-66
 Identities = 126/180 (70%), Positives = 133/180 (73%), Gaps = 1/180 (0%)
 Frame = +3

Query: 36  MPKSCAARQCCNRYSSRRKQLTFHRFPFSRPELLKEWVLNIGRGDFEPKQHTVICSEHFR 215
           MPKSCAARQCCNRYS+RRKQLTFHRFPFSRPELLKEWVLNIGRGDFEPKQHTVICSEHFR
Sbjct: 1   MPKSCAARQCCNRYSNRRKQLTFHRFPFSRPELLKEWVLNIGRGDFEPKQHTVICSEHFR 60

Query: 216 PECFSAFGNRKNLKHNAVPTEFTFQGPPQLVRETADPDGQIG-AASEKGEVHPETGPSEC 392
           PECFSAFGNRKNLKHNAVPT F FQGPPQLVRE  DP G+ G A S + +V PETG  EC
Sbjct: 61  PECFSAFGNRKNLKHNAVPTVFAFQGPPQLVRENTDPTGRSGDATSGERKVLPETGSGEC 120

Query: 393 GPRRKRDTALEVRQPPPDAGGPRAQGQPGRTGAVAKXXXXXXXXXXXXXXXSTQPPDHSY 572
           G  RK DT +EV Q PP+ GG  AQ  P  T   +                 TQP DHSY
Sbjct: 121 GLGRKMDTTVEVLQLPPEVGGLGAQ-VPPHTPETSGVPGQPASPPELKRRLPTQPSDHSY 179


>ref|NP_001029820.1| hypothetical protein LOC538615 [Bos taurus]
          Length = 213

 Score = 86.7 bits (213), Expect = 3e-17
 Identities = 42/100 (42%), Positives = 60/100 (60%)
 Frame = +3

Query: 36  MPKSCAARQCCNRYSSRRKQLTFHRFPFSRPELLKEWVLNIGRGDFEPKQHTVICSEHFR 215
           M +SC+A  C NRY  + K ++FH+FP +RP L K+W   + R +F+P +++ ICSEHF 
Sbjct: 1   MVQSCSAYGCKNRYD-KDKPVSFHKFPLTRPSLCKKWEAAVRRKNFKPTKYSSICSEHFT 59

Query: 216 PECFSAFGNRKNLKHNAVPTEFTFQGPPQLVRETADPDGQ 335
           P+CF    N K LK +AVPT F    P     +  +P  Q
Sbjct: 60  PDCFKRECNNKLLKEDAVPTIFLCTEPHDKKEDLLEPQEQ 99


>ref|XP_600980.2| PREDICTED: similar to THAP domain containing 8 [Bos taurus]
          Length = 405

 Score = 64.3 bits (155), Expect = 2e-10
 Identities = 35/109 (32%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
 Frame = +3

Query: 12  GSRAGRLEMPKSCAARQCCNRY--SSRRKQLTFHRFPFSRPELLKEWVLNIGRGDFEPKQ 185
           GS AG   MP+ CAA  C NR   +++ ++L+F+ FP    E L++W+ N+ R  + P +
Sbjct: 287 GSAAG---MPRYCAAICCKNRRGRNNKERKLSFYPFPLHDKERLEKWLKNMKRDSWVPSK 343

Query: 186 HTVICSEHFRPECFSAFGNRKNLKHNAVPTEFTFQGPPQLVRETADPDG 332
           +  +CS+HF P+        + LK  A+PT F      Q++   +  +G
Sbjct: 344 YQFLCSDHFTPDSLDIRWGIRYLKQTAIPTIFALPEDNQVLEAGSRGEG 392


>ref|XP_617470.2| PREDICTED: similar to THAP domain containing 8 [Bos taurus]
          Length = 259

 Score = 62.4 bits (150), Expect = 7e-10
 Identities = 49/166 (29%), Positives = 71/166 (42%), Gaps = 15/166 (9%)
 Frame = +3

Query: 36  MPKSCAARQCCN---RYSSRRKQLTFHRFPFSRPELLKEWVLNIGRGDFEPKQHTVICSE 206
           MPK C A  C N   +  +  + ++F++FP      L+ W+ ++GR  + P  H  +CSE
Sbjct: 1   MPKYCLAPNCSNTAGQLGADNRPVSFYKFPLKDGPRLQAWLRHMGREHWVPSCHQHLCSE 60

Query: 207 HFRPECFSAFGNRKNLKHNAVPTEFTFQGPPQ-------LVRETADPDGQIGAASEKGEV 365
           HF P CF      + L+ +AVP+ F+   P Q         +    P  Q   +   G V
Sbjct: 61  HFAPSCFQWRWGVRYLRPDAVPSIFSRVPPAQRQQSSRSTEKPVVPPPLQATPSLASGPV 120

Query: 366 H-----PETGPSECGPRRKRDTALEVRQPPPDAGGPRAQGQPGRTG 488
                 P +G  E  P     T L + QP P    P A  Q  R G
Sbjct: 121 QLLVLGPASGAPE-APATVFLTPLSL-QPAPAGPRPGASAQHPRAG 164


>ref|NP_001033758.1| THAP domain containing 4 [Bos taurus]
          Length = 570

 Score = 56.2 bits (134), Expect = 5e-08
 Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
 Frame = +3

Query: 48  CAARQCCNRYSSRRKQ-LTFHRFPFSRPELLKEWVLNIGRGDFEPKQHTVICSEHFRPEC 224
           CAA  C NR     K+ ++FHRFP    + L +W+  + R ++ P +++ +CSEHF  + 
Sbjct: 5   CAAANCSNRQGKGEKRAVSFHRFPLKDSKRLMQWLKAVQRDNWTPTKYSFLCSEHFTKDS 64

Query: 225 FS--AFGNRKNLKHNAVPTEF 281
           FS       + LK  AVP+ F
Sbjct: 65  FSKRLEDQHRLLKPTAVPSIF 85


>ref|XP_585045.2| PREDICTED: similar to THAP domain containing 9 [Bos taurus]
          Length = 246

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
 Frame = +3

Query: 36  MPKSCAARQCCNRYS--SRRKQLTFHRFPFSRPELLKEWVLNIGRGD------FEPKQHT 191
           M +SC+A  C  R +  SR + L+FH+FP    +  K W+  + R D      + P    
Sbjct: 1   MTRSCSAVGCSTRDTVLSRERGLSFHQFPTDTIQRSK-WIRAVNRMDPRSKKIWIPGPGA 59

Query: 192 VICSEHFRPECFSAFGNRKNLKHNAVPT 275
           ++CS+HF+   F ++G R+ LK  AVP+
Sbjct: 60  MLCSKHFQESDFESYGIRRKLKKGAVPS 87


  Database: RefSeqBP
    Posted date:  Aug 1, 2006  7:14 PM
  Number of letters in database: 16,112,626
  Number of sequences in database:  33,508
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,004,898
Number of Sequences: 33508
Number of extensions: 1083794
Number of successful extensions: 9122
Number of sequences better than 1.0e-05: 6
Number of HSP's better than  0.0 without gapping: 5377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8803
length of database: 16,112,626
effective HSP length: 103
effective length of database: 12,661,302
effective search space used: 3545164560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqCP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= THY01_0069_G08
         (1152 letters)

Database: RefSeqCP 
           33,732 sequences; 19,266,565 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_849390.1| PREDICTED: similar to THAP domain protein 3 iso...   215   7e-56
Alignment   gi|XP_858681.1| PREDICTED: similar to THAP domain protein 3 iso...   197   1e-50
Alignment   gi|XP_848435.1| PREDICTED: similar to THAP domain protein 1 iso...    89   6e-18
Alignment   gi|XP_532789.1| PREDICTED: similar to THAP domain protein 1 iso...    86   5e-17
Alignment   gi|XP_541680.2| PREDICTED: similar to CLIP-170-related protein ...    65   1e-10
Alignment   gi|XP_539521.2| PREDICTED: similar to THAP domain containing 5 ...    62   1e-09
Alignment   gi|XP_543564.2| PREDICTED: similar to THAP domain protein 7 [Ca...    53   5e-07
Alignment   gi|XP_544956.2| PREDICTED: similar to THAP domain containing 9 ...    52   1e-06
Alignment   gi|XP_855909.1| PREDICTED: similar to THAP domain containing 6 ...    50   4e-06
Alignment   gi|XP_544933.1| PREDICTED: similar to THAP domain containing 6 ...    49   9e-06

>ref|XP_849390.1| PREDICTED: similar to THAP domain protein 3 isoform 1 [Canis
           familiaris]
          Length = 225

 Score =  215 bits (547), Expect = 7e-56
 Identities = 125/234 (53%), Positives = 131/234 (55%), Gaps = 2/234 (0%)
 Frame = +3

Query: 36  MPKSCAARQCCNRYSSRRKQLTFHRFPFSRPELLKEWVLNIGRGDFEPKQHTVICSEHFR 215
           MPKSCAARQCCNRYSSRRKQLTFHRFPFSRPELLKEWVLNIGR +F+PKQHTVICSEHFR
Sbjct: 1   MPKSCAARQCCNRYSSRRKQLTFHRFPFSRPELLKEWVLNIGRANFKPKQHTVICSEHFR 60

Query: 216 PECFSAFGNRKNLKHNAVPTEFTFQGPPQLVRETADP-DGQIGAASEKG-EVHPETGPSE 389
           PECFSAFGNRKNLK NAVPT F FQ   QL RE ADP  G     S K   V  E  P+E
Sbjct: 61  PECFSAFGNRKNLKQNAVPTVFAFQDATQLARENADPAGGDTNVDSHKEVSVASEVVPAE 120

Query: 390 CGPRRKRDTALEVRQPPPDAGGPRAQGQPGRTGAVAKXXXXXXXXXXXXXXXSTQPPDHS 569
           CG  RK + ALEV   PP A GP  Q  P R                       Q  DHS
Sbjct: 121 CGWGRKLEAALEVL--PPMASGPAEQVVPRR-------LQGTQAPAQQASPSPAQTSDHS 171

Query: 570 YXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMASHLQACRAGSRPEQQS 731
           Y                                   M+S L+A RAG  PE QS
Sbjct: 172 YALLDLDALKKKLFLTLKENEKLRKRLKAQRLVIRRMSSRLRAHRAGPPPEPQS 225


>ref|XP_858681.1| PREDICTED: similar to THAP domain protein 3 isoform 2 [Canis
           familiaris]
          Length = 203

 Score =  197 bits (502), Expect = 1e-50
 Identities = 115/232 (49%), Positives = 122/232 (52%)
 Frame = +3

Query: 36  MPKSCAARQCCNRYSSRRKQLTFHRFPFSRPELLKEWVLNIGRGDFEPKQHTVICSEHFR 215
           MPKSCAARQCCNRYSSRRKQLTFHRFPFSRPELLKEWVLNIGR +F+PKQHTVICSEHFR
Sbjct: 1   MPKSCAARQCCNRYSSRRKQLTFHRFPFSRPELLKEWVLNIGRANFKPKQHTVICSEHFR 60

Query: 216 PECFSAFGNRKNLKHNAVPTEFTFQGPPQLVRETADPDGQIGAASEKGEVHPETGPSECG 395
           PECFSAFGNRKNLK NAVPT F FQ   Q+  E                      P+ECG
Sbjct: 61  PECFSAFGNRKNLKQNAVPTVFAFQDATQVASEVV--------------------PAECG 100

Query: 396 PRRKRDTALEVRQPPPDAGGPRAQGQPGRTGAVAKXXXXXXXXXXXXXXXSTQPPDHSYX 575
             RK + ALEV   PP A GP  Q  P R                       Q  DHSY 
Sbjct: 101 WGRKLEAALEVL--PPMASGPAEQVVPRR-------LQGTQAPAQQASPSPAQTSDHSYA 151

Query: 576 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMASHLQACRAGSRPEQQS 731
                                             M+S L+A RAG  PE QS
Sbjct: 152 LLDLDALKKKLFLTLKENEKLRKRLKAQRLVIRRMSSRLRAHRAGPPPEPQS 203


>ref|XP_848435.1| PREDICTED: similar to THAP domain protein 1 isoform 2 [Canis
           familiaris]
          Length = 213

 Score = 89.4 bits (220), Expect = 6e-18
 Identities = 43/101 (42%), Positives = 61/101 (60%)
 Frame = +3

Query: 36  MPKSCAARQCCNRYSSRRKQLTFHRFPFSRPELLKEWVLNIGRGDFEPKQHTVICSEHFR 215
           M +SC+A  C NRY  + K ++FH+FP +RP L K+W   + R +F+P +++ ICSEHF 
Sbjct: 1   MVQSCSAYGCKNRYD-KDKPVSFHKFPLTRPSLCKKWEAAVRRKNFKPTKYSSICSEHFT 59

Query: 216 PECFSAFGNRKNLKHNAVPTEFTFQGPPQLVRETADPDGQI 338
           P+CF    N K LK NAVPT F    P     +  +P  Q+
Sbjct: 60  PDCFKRECNNKLLKENAVPTIFLCTEPHDKKEDLLEPQEQL 100


>ref|XP_532789.1| PREDICTED: similar to THAP domain protein 1 isoform 1 [Canis
           familiaris]
          Length = 178

 Score = 86.3 bits (212), Expect = 5e-17
 Identities = 41/87 (47%), Positives = 56/87 (64%)
 Frame = +3

Query: 36  MPKSCAARQCCNRYSSRRKQLTFHRFPFSRPELLKEWVLNIGRGDFEPKQHTVICSEHFR 215
           M +SC+A  C NRY  + K ++FH+FP +RP L K+W   + R +F+P +++ ICSEHF 
Sbjct: 1   MVQSCSAYGCKNRYD-KDKPVSFHKFPLTRPSLCKKWEAAVRRKNFKPTKYSSICSEHFT 59

Query: 216 PECFSAFGNRKNLKHNAVPTEFTFQGP 296
           P+CF    N K LK NAVPT F    P
Sbjct: 60  PDCFKRECNNKLLKENAVPTIFLCTEP 86


>ref|XP_541680.2| PREDICTED: similar to CLIP-170-related protein [Canis familiaris]
          Length = 871

 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 3/146 (2%)
 Frame = +3

Query: 36  MPKSCAARQCCN---RYSSRRKQLTFHRFPFSRPELLKEWVLNIGRGDFEPKQHTVICSE 206
           MPK C A  C N   R  +  + ++F++FP      L+ W+ ++G  D+ P  H  +CSE
Sbjct: 1   MPKYCRAPNCSNTAGRLGADNRPVSFYKFPLKDGPRLQAWLRHMGHEDWVPSCHHHLCSE 60

Query: 207 HFRPECFSAFGNRKNLKHNAVPTEFTFQGPPQLVRETADPDGQIGAASEKGEVHPETGPS 386
           HF P CF      + L+ +AVP+ F+   P +  + +   +  + + S      PE  P 
Sbjct: 61  HFTPSCFQWRWGVRYLRPDAVPSIFSPAPPAKRQQSSRSTEKPVESPSS-----PEAMPL 115

Query: 387 ECGPRRKRDTALEVRQPPPDAGGPRA 464
              P       + +      +GGP A
Sbjct: 116 SPDPTVSASGPMHLAVLGSASGGPEA 141


>ref|XP_539521.2| PREDICTED: similar to THAP domain containing 5 [Canis familiaris]
          Length = 394

 Score = 62.0 bits (149), Expect = 1e-09
 Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
 Frame = +3

Query: 36  MPKSCAARQCCNRY--SSRRKQLTFHRFPFSRPELLKEWVLNIGRGDFEPKQHTVICSEH 209
           MP+ CAA  C NR   +S+ ++L+F+ FP    E L++W+ N+ R  + P ++  +CS+H
Sbjct: 1   MPRYCAAICCKNRRGRNSKDRKLSFYPFPLHDKERLEKWLKNMKRDSWVPSKYQFLCSDH 60

Query: 210 FRPECFSAFGNRKNLKHNAVPTEFT 284
           F P+        + LK  A+PT F+
Sbjct: 61  FTPDSLDIRWGIRYLKQTAIPTIFS 85


>ref|XP_543564.2| PREDICTED: similar to THAP domain protein 7 [Canis familiaris]
          Length = 313

 Score = 53.1 bits (126), Expect = 5e-07
 Identities = 46/155 (29%), Positives = 64/155 (41%), Gaps = 17/155 (10%)
 Frame = +3

Query: 36  MPKSCAARQCCNRYS--SRRKQLTFHRFPFSRPELLKEWVLNI------GRGDFEP-KQH 188
           MP+ C+A  CC R +  +R + ++FHR P         W+ N       G+G ++P  ++
Sbjct: 1   MPRHCSAAGCCTRDTRETRNRGISFHRLPKKDNPRRGLWLANCQRLDPSGQGLWDPASEY 60

Query: 189 TVICSEHFRPECFSAFG--NRKNLKHNAVPTEFTFQGPPQLVRETADPDGQIGAASEKGE 362
              CS+HF   CF   G      LK  AVPT   F+   +L R T            KG 
Sbjct: 61  IYFCSKHFEENCFELVGISGYHRLKEGAVPT--IFESFSKLRRTT----------KTKGH 108

Query: 363 VHPETGPSECGPRRKRDTALEVR------QPPPDA 449
            +P   P     RR R    + R       PPP A
Sbjct: 109 SYPPGPPDISRLRRCRKRCSDSRGPTTPFSPPPPA 143


>ref|XP_544956.2| PREDICTED: similar to THAP domain containing 9 [Canis familiaris]
          Length = 902

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
 Frame = +3

Query: 36  MPKSCAARQCCNRYS--SRRKQLTFHRFPFSRPELLKEWVLNIGRGD------FEPKQHT 191
           M +SC+A  C  R +  SR + L+FH+FP    +  K W+  + R D      + P    
Sbjct: 1   MTRSCSAVGCSTRDTVLSRERGLSFHQFPTDTIQRSK-WIRAVNRVDPRSKKIWIPGPGA 59

Query: 192 VICSEHFRPECFSAFGNRKNLKHNAVPT 275
           ++CS+HF+   F ++G R+ LK  AVP+
Sbjct: 60  ILCSKHFQESDFESYGIRRKLKKGAVPS 87


>ref|XP_855909.1| PREDICTED: similar to THAP domain containing 6 isoform 4 [Canis
           familiaris]
          Length = 180

 Score = 50.1 bits (118), Expect = 4e-06
 Identities = 35/101 (34%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
 Frame = +3

Query: 36  MPKSCAARQCCNRY--SSRRKQLTFHRFPFSRPELLKEWVLNIGR------GDFEPKQHT 191
           M K C+A  C +R   +S+ K LTFH FP     + ++WVL + R      G +EPK+  
Sbjct: 1   MVKCCSAIGCASRCLPNSKLKGLTFHVFPTDE-NVKRKWVLAMKRLDVNAAGIWEPKKGD 59

Query: 192 VICSEHFRPECFSAFGNRKNLKHNAVPTEFTFQGPPQLVRE 314
           V+CS HF+   F        LK   +P+ F    PP  ++E
Sbjct: 60  VLCSRHFKKTDFDRSTPNIKLKPGVIPSIF---DPPSHLQE 97


>ref|XP_544933.1| PREDICTED: similar to THAP domain containing 6 isoform 1 [Canis
           familiaris]
          Length = 222

 Score = 48.9 bits (115), Expect = 9e-06
 Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
 Frame = +3

Query: 36  MPKSCAARQCCNRY--SSRRKQLTFHRFPFSRPELLKEWVLNIGR------GDFEPKQHT 191
           M K C+A  C +R   +S+ K LTFH FP     + ++WVL + R      G +EPK+  
Sbjct: 1   MVKCCSAIGCASRCLPNSKLKGLTFHVFPTDE-NVKRKWVLAMKRLDVNAAGIWEPKKGD 59

Query: 192 VICSEHFRPECFSAFGNRKNLKHNAVPTEF 281
           V+CS HF+   F        LK   +P+ F
Sbjct: 60  VLCSRHFKKTDFDRSTPNIKLKPGVIPSIF 89


  Database: RefSeqCP
    Posted date:  Aug 1, 2006  9:25 PM
  Number of letters in database: 19,266,565
  Number of sequences in database:  33,732
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,665,907
Number of Sequences: 33732
Number of extensions: 1279510
Number of successful extensions: 11061
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 6340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10655
length of database: 19,266,565
effective HSP length: 105
effective length of database: 15,724,705
effective search space used: 4371467990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqHP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= THY01_0069_G08
         (1152 letters)

Database: RefSeqHP 
           39,411 sequences; 17,774,539 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_612359.2| THAP domain containing, apoptosis associated pr...   218   6e-57
Alignment   gi|NP_060575.1| THAP domain containing, apoptosis associated pr...    91   2e-18
Alignment   gi|NP_113623.1| THAP domain containing, apoptosis associated pr...    77   4e-14
Alignment   gi|NP_689871.1| THAP domain containing 8 [Homo sapiens]               62   1e-09
Alignment   gi|NP_057047.3| THAP domain containing 4 [Homo sapiens]               55   1e-07
Alignment   gi|NP_001008695.1| THAP domain containing 7 isoform a [Homo sap...    54   2e-07
Alignment   gi|NP_085050.2| THAP domain containing 7 isoform a [Homo sapiens]     54   2e-07
Alignment   gi|NP_078948.3| THAP domain containing 9 [Homo sapiens]               52   7e-07
Alignment   gi|NP_653322.1| THAP domain containing 6 [Homo sapiens]               50   4e-06

>ref|NP_612359.2| THAP domain containing, apoptosis associated protein 3 [Homo
           sapiens]
          Length = 175

 Score =  218 bits (556), Expect = 6e-57
 Identities = 108/149 (72%), Positives = 114/149 (76%), Gaps = 9/149 (6%)
 Frame = +3

Query: 36  MPKSCAARQCCNRYSSRRKQLTFHRFPFSRPELLKEWVLNIGRGDFEPKQHTVICSEHFR 215
           MPKSCAARQCCNRYSSRRKQLTFHRFPFSRPELLKEWVLNIGRG+F+PKQHTVICSEHFR
Sbjct: 1   MPKSCAARQCCNRYSSRRKQLTFHRFPFSRPELLKEWVLNIGRGNFKPKQHTVICSEHFR 60

Query: 216 PECFSAFGNRKNLKHNAVPTEFTFQGPPQLVRETADPDGQIGAASE---------KGEVH 368
           PECFSAFGNRKNLKHNAVPT F FQ P Q VRE  DP  + G AS          + +V 
Sbjct: 61  PECFSAFGNRKNLKHNAVPTVFAFQDPTQQVRENTDPASERGNASSSQKEKTSPCRSQVL 120

Query: 369 PETGPSECGPRRKRDTALEVRQPPPDAGG 455
           PE G  E  P R  DTALE  Q PP+A G
Sbjct: 121 PEAGAGEDSPGRNMDTALEELQLPPNAEG 149


>ref|NP_060575.1| THAP domain containing, apoptosis associated protein 1 isoform 1
           [Homo sapiens]
          Length = 213

 Score = 90.9 bits (224), Expect = 2e-18
 Identities = 44/101 (43%), Positives = 61/101 (60%)
 Frame = +3

Query: 36  MPKSCAARQCCNRYSSRRKQLTFHRFPFSRPELLKEWVLNIGRGDFEPKQHTVICSEHFR 215
           M +SC+A  C NRY  + K ++FH+FP +RP L KEW   + R +F+P +++ ICSEHF 
Sbjct: 1   MVQSCSAYGCKNRYD-KDKPVSFHKFPLTRPSLCKEWEAAVRRKNFKPTKYSSICSEHFT 59

Query: 216 PECFSAFGNRKNLKHNAVPTEFTFQGPPQLVRETADPDGQI 338
           P+CF    N K LK NAVPT F    P     +  +P  Q+
Sbjct: 60  PDCFKRECNNKLLKENAVPTIFLCTEPHDKKEDLLEPQEQL 100


>ref|NP_113623.1| THAP domain containing, apoptosis associated protein 2 [Homo
           sapiens]
          Length = 228

 Score = 76.6 bits (187), Expect = 4e-14
 Identities = 37/84 (44%), Positives = 50/84 (59%)
 Frame = +3

Query: 36  MPKSCAARQCCNRYSSRRKQLTFHRFPFSRPELLKEWVLNIGRGDFEPKQHTVICSEHFR 215
           MP +CAA  C   Y+ +   ++FHRFP   P+  KEWV  + R +F P +HT +CS+HF 
Sbjct: 1   MPTNCAAAGCATTYN-KHINISFHRFPLD-PKRRKEWVRLVRRKNFVPGKHTFLCSKHFE 58

Query: 216 PECFSAFGNRKNLKHNAVPTEFTF 287
             CF   G  + LK +AVPT F F
Sbjct: 59  ASCFDLTGQTRRLKMDAVPTIFDF 82


>ref|NP_689871.1| THAP domain containing 8 [Homo sapiens]
          Length = 274

 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
 Frame = +3

Query: 36  MPKSCAARQCCN---RYSSRRKQLTFHRFPFSRPELLKEWVLNIGRGDFEPKQHTVICSE 206
           MPK C A  C N   R  +  + ++F++FP      L+ W+ ++G   + P  H  +CSE
Sbjct: 1   MPKYCRAPNCSNTAGRLGADNRPVSFYKFPLKDGPRLQAWLQHMGCEHWVPSCHQHLCSE 60

Query: 207 HFRPECFSAFGNRKNLKHNAVPTEFTFQGPP 299
           HF P CF      + L+ +AVP+ F+ +GPP
Sbjct: 61  HFTPSCFQWRWGVRYLRPDAVPSIFS-RGPP 90


>ref|NP_057047.3| THAP domain containing 4 [Homo sapiens]
          Length = 577

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
 Frame = +3

Query: 48  CAARQCCNRYSSRRKQ-LTFHRFPFSRPELLKEWVLNIGRGDFEPKQHTVICSEHFRPEC 224
           CAA  C NR     K+ ++FHRFP    + L +W+  + R ++ P +++ +CSEHF  + 
Sbjct: 5   CAAVNCSNRQGKGEKRAVSFHRFPLKDSKRLIQWLKAVQRDNWTPTKYSFLCSEHFTKDS 64

Query: 225 FS--AFGNRKNLKHNAVPTEF 281
           FS       + LK  AVP+ F
Sbjct: 65  FSKRLEDQHRLLKPTAVPSIF 85


>ref|NP_001008695.1| THAP domain containing 7 isoform a [Homo sapiens]
          Length = 309

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 49/156 (31%), Positives = 68/156 (43%), Gaps = 18/156 (11%)
 Frame = +3

Query: 36  MPKSCAARQCCNRYS--SRRKQLTFHRFPFSRPELLKEWVLNI------GRGDFEP-KQH 188
           MP+ C+A  CC R +  +R + ++FHR P         W+ N       G+G ++P  ++
Sbjct: 1   MPRHCSAAGCCTRDTRETRNRGISFHRLPKKDNPRRGLWLANCQRLDPSGQGLWDPASEY 60

Query: 189 TVICSEHFRPECFSAFG--NRKNLKHNAVPTEFTFQGPPQLVRETADPDGQIGAASEKGE 362
              CS+HF  +CF   G      LK  AVPT   F+   +L R T            KG 
Sbjct: 61  IYFCSKHFEEDCFELVGISGYHRLKEGAVPT--IFESFSKLRRTT----------KTKGH 108

Query: 363 VHPETGPSECGP-RRKRDTALEVR------QPPPDA 449
            +P  GP+E    RR R    E R       PPP A
Sbjct: 109 SYP-PGPAEVSRLRRCRKRCSEGRGPTTPFSPPPPA 143


>ref|NP_085050.2| THAP domain containing 7 isoform a [Homo sapiens]
          Length = 309

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 49/156 (31%), Positives = 68/156 (43%), Gaps = 18/156 (11%)
 Frame = +3

Query: 36  MPKSCAARQCCNRYS--SRRKQLTFHRFPFSRPELLKEWVLNI------GRGDFEP-KQH 188
           MP+ C+A  CC R +  +R + ++FHR P         W+ N       G+G ++P  ++
Sbjct: 1   MPRHCSAAGCCTRDTRETRNRGISFHRLPKKDNPRRGLWLANCQRLDPSGQGLWDPASEY 60

Query: 189 TVICSEHFRPECFSAFG--NRKNLKHNAVPTEFTFQGPPQLVRETADPDGQIGAASEKGE 362
              CS+HF  +CF   G      LK  AVPT   F+   +L R T            KG 
Sbjct: 61  IYFCSKHFEEDCFELVGISGYHRLKEGAVPT--IFESFSKLRRTT----------KTKGH 108

Query: 363 VHPETGPSECGP-RRKRDTALEVR------QPPPDA 449
            +P  GP+E    RR R    E R       PPP A
Sbjct: 109 SYP-PGPAEVSRLRRCRKRCSEGRGPTTPFSPPPPA 143


>ref|NP_078948.3| THAP domain containing 9 [Homo sapiens]
          Length = 903

 Score = 52.4 bits (124), Expect = 7e-07
 Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 8/95 (8%)
 Frame = +3

Query: 36  MPKSCAARQCCNRYS--SRRKQLTFHRFPFSRPELLKEWVLNIGRGD------FEPKQHT 191
           M +SC+A  C  R +  SR + L+FH+FP    +  K W+  + R D      + P    
Sbjct: 1   MTRSCSAVGCSTRDTVLSRERGLSFHQFPTDTIQRSK-WIRAVNRVDPRSKKIWIPGPGA 59

Query: 192 VICSEHFRPECFSAFGNRKNLKHNAVPTEFTFQGP 296
           ++CS+HF+   F ++G R+ LK  AVP+   ++ P
Sbjct: 60  ILCSKHFQESDFESYGIRRKLKKGAVPSVSLYKIP 94


>ref|NP_653322.1| THAP domain containing 6 [Homo sapiens]
          Length = 222

 Score = 50.1 bits (118), Expect = 4e-06
 Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
 Frame = +3

Query: 36  MPKSCAARQCCNRY--SSRRKQLTFHRFPFSRPELLKEWVLNIGR------GDFEPKQHT 191
           M K C+A  C +R   +S+ K LTFH FP     + ++WVL + R      G +EPK+  
Sbjct: 1   MVKCCSAIGCASRCLPNSKLKGLTFHVFPTDE-NIKRKWVLAMKRLDVNAAGIWEPKKGD 59

Query: 192 VICSEHFRPECFSAFGNRKNLKHNAVPTEF 281
           V+CS HF+   F        LK   +P+ F
Sbjct: 60  VLCSRHFKKTDFDRSAPNIKLKPGVIPSIF 89


  Database: RefSeqHP
    Posted date:  Aug 2, 2006 12:57 AM
  Number of letters in database: 17,774,539
  Number of sequences in database:  39,411
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,004,853
Number of Sequences: 39411
Number of extensions: 1324378
Number of successful extensions: 12494
Number of sequences better than 1.0e-05: 9
Number of HSP's better than  0.0 without gapping: 6595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12058
length of database: 17,774,539
effective HSP length: 104
effective length of database: 13,675,795
effective search space used: 3815546805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqSP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= THY01_0069_G08
         (1152 letters)

Database: RefSeqSP 
           1040 sequences; 434,620 total letters

Searching...done

 ***** No hits found ******

  Database: RefSeqSP
    Posted date:  Aug 1, 2006  7:14 PM
  Number of letters in database: 434,620
  Number of sequences in database:  1040
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 997,146
Number of Sequences: 1040
Number of extensions: 25551
Number of successful extensions: 211
Number of sequences better than 1.0e-05: 0
Number of HSP's better than  0.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 434,620
effective HSP length: 78
effective length of database: 353,500
effective search space used: 107817500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqMP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= THY01_0069_G08
         (1152 letters)

Database: RefSeqMP 
           45,328 sequences; 21,768,885 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_780361.1| THAP domain containing, apoptosis associated pr...   191   2e-48
Alignment   gi|NP_950243.1| THAP domain containing, apoptosis associated pr...    90   5e-18
Alignment   gi|NP_080056.1| THAP domain containing, apoptosis associated pr...    76   8e-14
Alignment   gi|NP_080196.3| THAP domain containing 4 [Mus musculus]               55   1e-07
Alignment   gi|NP_081185.1| THAP domain containing 7 [Mus musculus]               52   9e-07

>ref|NP_780361.1| THAP domain containing, apoptosis associated protein 3 [Mus
           musculus]
          Length = 218

 Score =  191 bits (484), Expect = 2e-48
 Identities = 99/149 (66%), Positives = 101/149 (67%)
 Frame = +3

Query: 36  MPKSCAARQCCNRYSSRRKQLTFHRFPFSRPELLKEWVLNIGRGDFEPKQHTVICSEHFR 215
           MPKSCAARQCCNRYSSRRKQLTFHRFPFSRPELL+EWVLNIGR DF+PKQHTVICSEHFR
Sbjct: 1   MPKSCAARQCCNRYSSRRKQLTFHRFPFSRPELLREWVLNIGRADFKPKQHTVICSEHFR 60

Query: 216 PECFSAFGNRKNLKHNAVPTEFTFQGPPQLVRETADPDGQIGAASEKGEVHPETGPSECG 395
           PECFSAFGNRKNLKHNAVPT F FQ P                     EV PE G     
Sbjct: 61  PECFSAFGNRKNLKHNAVPTVFAFQNPT--------------------EVCPEVGAGGDS 100

Query: 396 PRRKRDTALEVRQPPPDAGGPRAQGQPGR 482
             R  DT LE  QPP    GP  Q  P R
Sbjct: 101 SGRNMDTTLEELQPPTPE-GPVQQVLPDR 128


>ref|NP_950243.1| THAP domain containing, apoptosis associated protein 1 [Mus
           musculus]
          Length = 210

 Score = 89.7 bits (221), Expect = 5e-18
 Identities = 51/135 (37%), Positives = 73/135 (54%)
 Frame = +3

Query: 36  MPKSCAARQCCNRYSSRRKQLTFHRFPFSRPELLKEWVLNIGRGDFEPKQHTVICSEHFR 215
           M +SC+A  C NRY  + K ++FH+FP +RP L K+W   + R +F+P +++ ICSEHF 
Sbjct: 1   MVQSCSAYGCKNRYD-KDKPVSFHKFPLTRPSLCKQWEAAVKRKNFKPTKYSSICSEHFT 59

Query: 216 PECFSAFGNRKNLKHNAVPTEFTFQGPPQLVRETADPDGQIGAASEKGEVHPETGPSECG 395
           P+CF    N K LK NAVPT F +  P +   +  D + Q            E  PS   
Sbjct: 60  PDCFKRECNNKLLKENAVPTIFLYIEPHE---KKEDLESQ------------EQLPSPSP 104

Query: 396 PRRKRDTALEVRQPP 440
           P  + D A+ +  PP
Sbjct: 105 PASQVDAAIGLLMPP 119


>ref|NP_080056.1| THAP domain containing, apoptosis associated protein 2 [Mus
           musculus]
          Length = 217

 Score = 75.9 bits (185), Expect = 8e-14
 Identities = 37/84 (44%), Positives = 50/84 (59%)
 Frame = +3

Query: 36  MPKSCAARQCCNRYSSRRKQLTFHRFPFSRPELLKEWVLNIGRGDFEPKQHTVICSEHFR 215
           MP +CAA  C   Y+ +   ++FHRFP   P+  KEWV  + R +F P +HT +CS+HF 
Sbjct: 1   MPTNCAAAGCAATYN-KHINISFHRFPLD-PKRRKEWVRLVRRKNFVPGKHTFLCSKHFE 58

Query: 216 PECFSAFGNRKNLKHNAVPTEFTF 287
             CF   G  + LK +AVPT F F
Sbjct: 59  ASCFDLTGQTRRLKMDAVPTIFDF 82


>ref|NP_080196.3| THAP domain containing 4 [Mus musculus]
          Length = 569

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 40/145 (27%), Positives = 63/145 (43%), Gaps = 11/145 (7%)
 Frame = +3

Query: 48  CAARQCCNRYSSRRKQ-LTFHRFPFSRPELLKEWVLNIGRGDFEPKQHTVICSEHFRPEC 224
           CAA  C NR     K+ ++FHRFP    + L +W+  + R ++ P +++ +CSEHF  + 
Sbjct: 5   CAAVNCSNRQGKGEKRAVSFHRFPLKDSKRLIQWLKAVQRDNWTPTKYSFLCSEHFTKDS 64

Query: 225 FS--AFGNRKNLKHNAVPTEFTFQGPPQLV--------RETADPDGQIGAASEKGEVHPE 374
           FS       + LK  AVP+ F      +          + TA   G   A + KG +   
Sbjct: 65  FSKRLEDQHRLLKPTAVPSIFHLSEKKRGAGGHGHARRKTTAAMRGHTSAETGKGTIGSS 124

Query: 375 TGPSECGPRRKRDTALEVRQPPPDA 449
              S+    +     L+   P  DA
Sbjct: 125 LSSSDNLMAKPESRKLKRASPQDDA 149


>ref|NP_081185.1| THAP domain containing 7 [Mus musculus]
          Length = 309

 Score = 52.4 bits (124), Expect = 9e-07
 Identities = 47/155 (30%), Positives = 66/155 (42%), Gaps = 12/155 (7%)
 Frame = +3

Query: 36  MPKSCAARQCCNRYS--SRRKQLTFHRFPFSRPELLKEWVLNI------GRGDFEP-KQH 188
           MP+ C+A  CC R +  +R + ++FHR P         W+ N       G+G ++P  ++
Sbjct: 1   MPRHCSAAGCCTRDTRETRNRGISFHRLPKKDNPRRGLWLANCQRLDPSGQGLWDPTSEY 60

Query: 189 TVICSEHFRPECFSAFG--NRKNLKHNAVPTEFTFQGPPQLVRETADPDGQIGAASEKGE 362
              CS+HF   CF   G      LK  AVPT   F+   +L R           A  KG 
Sbjct: 61  IYFCSKHFEENCFELVGISGYHRLKEGAVPT--IFESFSKLRR----------TAKTKGH 108

Query: 363 VHPETGPSECGPRRKRDTALEVRQP-PPDAGGPRA 464
            +P   P     RR R    E + P  P +  PRA
Sbjct: 109 GYPPGLPDVSRLRRCRKRCSERQGPTTPFSPPPRA 143


  Database: RefSeqMP
    Posted date:  Aug 2, 2006 12:58 AM
  Number of letters in database: 21,768,885
  Number of sequences in database:  45,328
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,487,437
Number of Sequences: 45328
Number of extensions: 1397427
Number of successful extensions: 11414
Number of sequences better than 1.0e-05: 5
Number of HSP's better than  0.0 without gapping: 6747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11044
length of database: 21,768,885
effective HSP length: 105
effective length of database: 17,009,445
effective search space used: 4728625710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)