Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AMP01_0025_C08
(1859 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001035696.1| 2',5'-oligoadenylate synthetase 1 [Bos tauru... 493 e-139
Alignment gi|NP_835209.1| 2',5'-oligoadenylate synthetase 1, 40/46kDa [Bo... 456 e-128
Alignment gi|NP_001025017.1| 2',5'-oligoadenylate synthetase 1 [Bos tauru... 429 e-120
Alignment gi|NP_001019728.1| 2'-5'-oligoadenylate synthase 2 [Bos taurus]. 311 1e-84
Alignment gi|NP_001075128.1| 59 kDa 2'-5'-oligoadenylate synthase-like pr... 202 1e-51
>ref|NP_001035696.1| 2',5'-oligoadenylate synthetase 1 [Bos taurus].
Length = 389
Score = 493 bits (1270), Expect = e-139
Identities = 240/344 (69%), Positives = 276/344 (80%)
Frame = +1
Query: 91 DTPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXX 270
+TP LDKFIEDHLLP+ FR QVKEAIDI+C FLKERCF+ VR
Sbjct: 5 NTPAGSLDKFIEDHLLPDEEFRMQVKEAIDIICTFLKERCFRCAPHRVRVSKVVKGGSSG 64
Query: 271 XXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPR 450
TTLRGRSDADLVVFLT LTSF++QL+ R EFI+EIRRQLEACQ+E+ F+V FEVQ +
Sbjct: 65 KGTTLRGRSDADLVVFLTNLTSFQEQLERRGEFIEEIRRQLEACQREETFEVKFEVQKRQ 124
Query: 451 QENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGE 630
ENPRALSFVL SP+L Q VEFDVLPAFDALGQ T GY+P+ +YV+LI+ECK L +EGE
Sbjct: 125 WENPRALSFVLRSPKLNQAVEFDVLPAFDALGQLTKGYRPDSRVYVRLIQECKYLKREGE 184
Query: 631 FSTCFTELQRDFPRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYAWEQGS 810
FS CFTELQRDF +NRPTKLKSLIRLVKHWYQ CK+ G LPPQYALELLTVYAWEQG
Sbjct: 185 FSPCFTELQRDFLKNRPTKLKSLIRLVKHWYQLCKEQLGKPLPPQYALELLTVYAWEQGC 244
Query: 811 GKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDPADP 990
KT F TAQGFQTVL+LVLK++KLCI+WE YN +NP++ YLT+QL KPRPVILDPADP
Sbjct: 245 NKTGFITAQGFQTVLKLVLKYQKLCIYWEKNYNSENPIIEEYLTKQLAKPRPVILDPADP 304
Query: 991 TGNVGGGDTYSWQQLVEGALIWLNYPCFLKWNRSPVGSWKVSPE 1122
TGNV G D SW++L + AL+WL+YPCF KW+ SPVGSW VSP+
Sbjct: 305 TGNVAGKDANSWERLAQAALVWLDYPCFKKWDGSPVGSWDVSPQ 348
>ref|NP_835209.1| 2',5'-oligoadenylate synthetase 1, 40/46kDa [Bos taurus].
Length = 352
Score = 456 bits (1173), Expect = e-128
Identities = 225/341 (65%), Positives = 260/341 (76%)
Frame = +1
Query: 91 DTPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXX 270
DTP LDKFIEDHLL N FRTQVK+AIDI+C FLKERCF+ P R
Sbjct: 6 DTPAESLDKFIEDHLLSNEEFRTQVKQAIDIICTFLKERCFR--CAPHRVSKVVKGGSSG 63
Query: 271 XXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPR 450
TTLRGRSDADLVVFLT LTSF +QL+ R EFI+EIRRQLEACQ+E+ F+V EVQ +
Sbjct: 64 KGTTLRGRSDADLVVFLTNLTSFREQLERRGEFIEEIRRQLEACQREKTFEVKSEVQKRQ 123
Query: 451 QENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGE 630
ENPRALSFVL SP+L QEVEFDVLPAFDALGQ T GY+P+P+IYV+LI+EC++ +EGE
Sbjct: 124 WENPRALSFVLRSPKLDQEVEFDVLPAFDALGQLTKGYRPDPQIYVKLIQECENQRREGE 183
Query: 631 FSTCFTELQRDFPRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYAWEQGS 810
FS CFTELQRDF + RP KLKSLIRLVKHWYQ CK H N LPPQYALELLTVYAWEQGS
Sbjct: 184 FSPCFTELQRDFLKERPAKLKSLIRLVKHWYQLCKMKHKNNLPPQYALELLTVYAWEQGS 243
Query: 811 GKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDPADP 990
K +FSTAQGF+TVLEL+LKH+ LCI+W+ YY+ +N ++ +YL +QL KPRPVILDPADP
Sbjct: 244 AKPEFSTAQGFRTVLELILKHQDLCIYWKKYYDTENSIIRQYLKKQLAKPRPVILDPADP 303
Query: 991 TGNVGGGDTYSWQQLVEGALIWLNYPCFLKWNRSPVGSWKV 1113
TGNV G + W L WL+Y C N PV +W V
Sbjct: 304 TGNVAGREPQRWHWLAHEVRYWLSYSCCTNLNGMPVSTWNV 344
>ref|NP_001025017.1| 2',5'-oligoadenylate synthetase 1 [Bos taurus].
Length = 362
Score = 429 bits (1103), Expect = e-120
Identities = 211/340 (62%), Positives = 248/340 (72%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 273
T LDKFI+DHLLP+ F+ QV EAIDI+C FLKE CFQ + PVR
Sbjct: 7 TQANKLDKFIKDHLLPHEEFQRQVNEAIDIICTFLKETCFQESTHPVRVSKVVKGGSSGK 66
Query: 274 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 453
TTL+ SDADLVVFLT LTSF++ + R FI+EIRRQLEA Q+++ F+V FEV R+
Sbjct: 67 GTTLKDLSDADLVVFLTNLTSFQENFEHRVRFIKEIRRQLEAYQRQKTFEVEFEVLKQRK 126
Query: 454 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGEF 633
RALSFVL SP Q V+FDVLPAFDAL Q T YKPNP+IYVQLI+EC++L +EGEF
Sbjct: 127 RKRRALSFVLRSPWFCQGVKFDVLPAFDALAQVTEDYKPNPQIYVQLIQECENLRREGEF 186
Query: 634 STCFTELQRDFPRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYAWEQGSG 813
S CFTELQR F + RP KLKSLIRLVKHWYQ CKK HG KLP QYALELLT+YAWEQ
Sbjct: 187 SPCFTELQRAFLKERPAKLKSLIRLVKHWYQQCKKRHGKKLPSQYALELLTIYAWEQEGS 246
Query: 814 KTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDPADPT 993
KT F TA+GF+TVLELVLKH+ LCI+W+ YY+F+NP++ + L QL+KPRPVILDPADPT
Sbjct: 247 KTKFRTAEGFRTVLELVLKHQDLCIYWKKYYDFENPIITQCLKRQLEKPRPVILDPADPT 306
Query: 994 GNVGGGDTYSWQQLVEGALIWLNYPCFLKWNRSPVGSWKV 1113
GNV G + WQ L + +WL Y C WN SPV W V
Sbjct: 307 GNVAGREPQRWQLLAQEVTVWLRYSCCKNWNGSPVSPWNV 346
>ref|NP_001019728.1| 2'-5'-oligoadenylate synthase 2 [Bos taurus].
Length = 714
Score = 311 bits (797), Expect = 1e-84
Identities = 162/352 (46%), Positives = 222/352 (63%), Gaps = 4/352 (1%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 273
TP LDKF++D L PN F+ Q+K+A+ I+C FL+E CF+ + ++
Sbjct: 344 TPGHLLDKFVKDFLQPNQTFQDQIKKALKIICSFLEENCFRHSTTKIQVIQGGSTVKG-- 401
Query: 274 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 453
T L+ SDA LVVF L S+ R I+EI QLEAC++E+ F+V FE+ +
Sbjct: 402 -TALKTGSDASLVVFANSLKSYTSPKNERYNIIKEIHEQLEACRQEKDFEVKFEIS--KW 458
Query: 454 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECK--SLGKEG 627
+ P LSF L S L + V+FDVLPAF+ALG+ G P+P Y +LI K + EG
Sbjct: 459 KPPWVLSFTLKSKVLNESVDFDVLPAFNALGELKSGSTPSPRTYTELIHLYKPSDVFLEG 518
Query: 628 EFSTCFTELQRDFPRNRPTKLKSLIRLVKHWYQTCKKPHGNK--LPPQYALELLTVYAWE 801
EFS CFT+LQR+F R+ P KLK LIRL+KHWY+ C+K K LPP+YALELLT+YAWE
Sbjct: 519 EFSVCFTKLQRNFVRSLPLKLKDLIRLLKHWYKGCEKKLKQKGSLPPKYALELLTIYAWE 578
Query: 802 QGSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDP 981
+GSG DF A+GF+TVLELV++++ LC+FW Y+F + ++ +L Q+++ RPVILDP
Sbjct: 579 KGSGAQDFDMAEGFRTVLELVIQYQHLCVFWTVNYSFDDEILRNFLLGQIRRTRPVILDP 638
Query: 982 ADPTGNVGGGDTYSWQQLVEGALIWLNYPCFLKWNRSPVGSWKVSPEAKAPP 1137
ADPTG+VGGG + W L + A WL+ CF + P+ W V + P
Sbjct: 639 ADPTGDVGGGHRWCWHLLAKEATEWLSSLCFKDKSGCPIQPWNVPKKRVQTP 690
Score = 230 bits (586), Expect = 4e-60
Identities = 141/345 (40%), Positives = 191/345 (55%), Gaps = 2/345 (0%)
Frame = +1
Query: 91 DTPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXX 270
+ P L++FI++HL P+ + + +++D +C L+E C T V
Sbjct: 10 EKPSEKLEEFIQNHLRPSEDCQKDIDQSVDTICEVLQEPCPSLTVTGVAKGGSYGRR--- 66
Query: 271 XXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPR 450
T LRG SD LVVF L F+DQ + + E + +I Q++ C+ K E+Q
Sbjct: 67 --TVLRGNSDGILVVFFGDLEQFQDQEKRQYELLSKIWAQMKHCESTWKLAAKMELQNTN 124
Query: 451 QENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSL-GKEG 627
+ + ++ LS+ Q Q + F+VLPAF+ALG K + Y +L + + + G
Sbjct: 125 RSS--RVTIQLSTKQ--QSITFNVLPAFNALGL---SEKSSLWTYRELKRSLDMVKARPG 177
Query: 628 EFSTCFTELQRDFPRNRPTKLKSLIRLVKHWYQTCKKPHGN-KLPPQYALELLTVYAWEQ 804
EFS CFTELQ F N P+KLK LI LVKHW+Q C++ N L P YALELLTVYAWEQ
Sbjct: 178 EFSVCFTELQEKFFSNYPSKLKDLILLVKHWFQKCQEKLINPSLLPPYALELLTVYAWEQ 237
Query: 805 GSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDPA 984
G G DF A+G +TVL L+ K ++LC++W YNF + V L QL+ PRPVILDP
Sbjct: 238 GCGAEDFDMAEGVRTVLRLIEKQEQLCVYWTVNYNFGDETVRNILLSQLQAPRPVILDPT 297
Query: 985 DPTGNVGGGDTYSWQQLVEGALIWLNYPCFLKWNRSPVGSWKVSP 1119
DPT NV +T W QL A WL L+ N SP SW V P
Sbjct: 298 DPTNNVSMDNT-CWLQLKHEAQNWLR---SLRQNESPGPSWNVLP 338
>ref|NP_001075128.1| 59 kDa 2'-5'-oligoadenylate synthase-like protein [Bos taurus].
Length = 352
Score = 202 bits (513), Expect = 1e-51
Identities = 125/353 (35%), Positives = 196/353 (55%), Gaps = 12/353 (3%)
Frame = +1
Query: 91 DTPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTAD-PVRXXXXXXXXXX 267
DTP L+ F+ ++ V +A+ V FLK++ F+G +
Sbjct: 9 DTPASRLNSFVAQCQHNIKEWKEDVVKAVQSVEKFLKKQRFRGDHGLDQKVLKVIRVGSF 68
Query: 268 XXXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTP 447
T LR ++ +LV+FL+ +SF+++ + + L C+K F +Q
Sbjct: 69 GNGTVLRNHAEVELVMFLSGFSSFQEEASNHNHH-EHVLSML--CEKLTDFPDLLHLQP- 124
Query: 448 RQENPR-------ALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKEC 606
+N R A++F + + +++++V ++PA+ L P ++P+PE+YV+LIK C
Sbjct: 125 --QNLRLVHGVTSAVAFTIQTWEMEEQVSVTIVPAYGVLRPSVPNFQPSPEVYVRLIKAC 182
Query: 607 KSLGKEGEFSTCFTELQRDFPRNRPTKLKSLIRLVKHWYQT---CKKPHGNKLPPQYALE 777
++LG FS F+ELQR+F + +PTKLKSL+RLVKHWY K P +LPP YALE
Sbjct: 183 RTLGY---FSPSFSELQRNFVKYKPTKLKSLLRLVKHWYLEYVKAKCPRA-ELPPMYALE 238
Query: 778 LLTVYAWEQGSGKTD-FSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLK 954
LLT+YAWE G+ + + F +G TVL L+ K+++LCI+W YY +NPV+ ++ QLK
Sbjct: 239 LLTIYAWETGTEEKERFRLDKGLVTVLLLLTKYQRLCIYWTKYYTLQNPVIEDFVRNQLK 298
Query: 955 KPRPVILDPADPTGNVGGGDTYSWQQLVEGALIWLNYPCFLKWNRSPVGSWKV 1113
+ RP+ILD ADPT NV G Y W + + A L C N + + +WK+
Sbjct: 299 EKRPIILDLADPTYNVATG--YRWDIVAQSARHCLKQSCCYDNNETCIPNWKL 349
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 58,627,227
Number of extensions: 1942853
Number of successful extensions: 5886
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5860
Number of HSP's successfully gapped: 6
Length of query: 619
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 511
Effective length of database: 14,107,870
Effective search space: 7209121570
Effective search space used: 7209121570
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AMP01_0025_C08
(1859 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001041596.1| 2'-5'-oligoadenylate synthase 1 [Canis lupus... 484 e-136
Alignment gi|NP_001041599.1| 2'-5'-oligoadenylate synthase 2 [Canis lupus... 330 4e-90
Alignment gi|NP_001041556.1| 2'-5'-oligoadenylate synthase 3 [Canis lupus... 321 1e-87
Alignment gi|NP_001041558.1| 59 kDa 2'-5'-oligoadenylate synthase-like pr... 241 2e-63
>ref|NP_001041596.1| 2'-5'-oligoadenylate synthase 1 [Canis lupus familiaris].
Length = 355
Score = 484 bits (1245), Expect = e-136
Identities = 230/341 (67%), Positives = 274/341 (80%)
Frame = +1
Query: 91 DTPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXX 270
DTP +DLD+FIE++LLP+T FR QVKEAI I+ FLKERCFQG A PVR
Sbjct: 6 DTPAKDLDRFIENYLLPDTQFRRQVKEAIHIISTFLKERCFQGAAHPVRVSKVVKGGSSG 65
Query: 271 XXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPR 450
TTLRGRSDADLVVFL L SF++QL+ R +FI EI+RQLEACQ+E+ F+V FEVQ+ +
Sbjct: 66 KGTTLRGRSDADLVVFLNNLKSFQEQLEKRGQFIWEIKRQLEACQREETFEVYFEVQSLQ 125
Query: 451 QENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGE 630
E PRALSFVL SPQL + VEFDVLPAFD LGQWT ++PNPE+Y++LI+EC++ G EGE
Sbjct: 126 WEKPRALSFVLKSPQLGEGVEFDVLPAFDVLGQWTNNHRPNPEVYIKLIQECENRGTEGE 185
Query: 631 FSTCFTELQRDFPRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYAWEQGS 810
FSTCFTELQRDF R RPTK+KSLIRLVKHWYQ CK+ G LPPQYALELLTVYAWE+G+
Sbjct: 186 FSTCFTELQRDFLRQRPTKVKSLIRLVKHWYQKCKQKLGKPLPPQYALELLTVYAWERGN 245
Query: 811 GKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDPADP 990
+T+F TAQGFQTVL+LVL +++LCI W YYNF+ P++ +YL QL KPRPVILDPADP
Sbjct: 246 HQTEFITAQGFQTVLKLVLNYQQLCIHWTKYYNFETPIIKQYLMRQLAKPRPVILDPADP 305
Query: 991 TGNVGGGDTYSWQQLVEGALIWLNYPCFLKWNRSPVGSWKV 1113
TGNV G DTY WQ+L + A +WL+YPCF KW+ SPVGSW V
Sbjct: 306 TGNVAGRDTYGWQRLAQEARVWLSYPCFKKWDGSPVGSWDV 346
>ref|NP_001041599.1| 2'-5'-oligoadenylate synthase 2 [Canis lupus familiaris].
Length = 685
Score = 330 bits (845), Expect = 4e-90
Identities = 177/343 (51%), Positives = 223/343 (65%), Gaps = 3/343 (0%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 273
TP LDKFI+D L PN F Q+ A+D +C FL++ CFQ +A V+
Sbjct: 342 TPGHLLDKFIKDFLQPNKNFLGQIAVAVDFICKFLQKNCFQHSATKVQKTVKGGSTGKG- 400
Query: 274 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 453
T L+ SDADLVVF L S+ Q R I+EI +QL ACQ+E++F V FE+ +
Sbjct: 401 -TALKTGSDADLVVFPDSLKSYTSQKNERCRIIKEIHKQLVACQQEKEFAVKFEIS--KW 457
Query: 454 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEG-E 630
+ PR LSF L S L + V FDVLPAF+ LGQ G P+P+IY +LI KS EG E
Sbjct: 458 KAPRVLSFSLKSKVLNESVNFDVLPAFNVLGQVNSGSPPSPKIYTELINLYKSSNAEGGE 517
Query: 631 FSTCFTELQRDFPRNRPTKLKSLIRLVKHWYQTCKKPHGNK--LPPQYALELLTVYAWEQ 804
FSTCFTELQ F +RPTK+K LIRLVKHWY+ C++ K LPP+YALELLT+YAWEQ
Sbjct: 518 FSTCFTELQCSFVASRPTKVKDLIRLVKHWYKQCERKLKKKGSLPPKYALELLTIYAWEQ 577
Query: 805 GSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDPA 984
GSG +F TA+GF+TVLELV K+++LC+FW YNF + V +L Q++K RPVILDPA
Sbjct: 578 GSGAENFDTAEGFRTVLELVTKYQQLCVFWTVNYNFDDETVRNFLLTQIQKTRPVILDPA 637
Query: 985 DPTGNVGGGDTYSWQQLVEGALIWLNYPCFLKWNRSPVGSWKV 1113
+PTG+VGGGD + W L + A WL+ CF PV SWKV
Sbjct: 638 EPTGDVGGGDRWCWHLLAKDATEWLSSFCFKDGTGYPVQSWKV 680
Score = 224 bits (570), Expect = 3e-58
Identities = 142/340 (41%), Positives = 189/340 (55%), Gaps = 3/340 (0%)
Frame = +1
Query: 109 LDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXXXTTLR 288
LD+ I++ L P + Q+ +A+D +C L+E T T LR
Sbjct: 16 LDELIQNSLRPYGECQKQIDDAVDTICAALQE-----TEQIPTVLSVVQGGSYGRKTVLR 70
Query: 289 GRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQENPRA 468
G SD +V+F++ L F+DQ + +++ + +I + L+ACQ K EVQ R
Sbjct: 71 GNSDGMIVIFVSDLEQFQDQKRSQDKILNKIWQLLKACQLAMKLPAKMEVQRFRD----G 126
Query: 469 LSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKE--GEFSTC 642
L F LS+ Q + F VLPA++ALG KP+ +IY +L K + K GEFS C
Sbjct: 127 LIFQLSTKW--QSITFKVLPAYNALGL---SEKPSSQIYREL-KRALDMTKAHPGEFSIC 180
Query: 643 FTELQRDFPRNRPTKLKSLIRLVKHWYQTCK-KPHGNKLPPQYALELLTVYAWEQGSGKT 819
FTELQ+ F P KLK LI LVK+WYQ C+ K G+ L YALELLTVYAWEQG G
Sbjct: 181 FTELQQKFFHKYPRKLKDLILLVKYWYQQCQEKLKGSPLLTMYALELLTVYAWEQGCGAE 240
Query: 820 DFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDPADPTGN 999
+F A+G +TVL L+ + ++LC++W YNF+N V L QL+ RPVILDP DPT N
Sbjct: 241 NFDIAEGIRTVLGLIRQQEQLCVYWIVNYNFENETVRNILLSQLRSSRPVILDPTDPTNN 300
Query: 1000 VGGGDTYSWQQLVEGALIWLNYPCFLKWNRSPVGSWKVSP 1119
V D SWQ L + A WL+ L N SP SW V P
Sbjct: 301 V-SKDNASWQLLKQEAQSWLS---ALSPNESPGPSWNVLP 336
>ref|NP_001041556.1| 2'-5'-oligoadenylate synthase 3 [Canis lupus familiaris].
Length = 1087
Score = 321 bits (823), Expect = 1e-87
Identities = 175/343 (51%), Positives = 222/343 (64%), Gaps = 3/343 (0%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 273
TP DLDKFI D L PN F QV +A+D +C FLKE CFQ +A ++
Sbjct: 750 TPAGDLDKFISDFLQPNRQFLAQVNKAVDTICSFLKENCFQNSA--IKVLKVVKGGSLAK 807
Query: 274 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 453
T LRGRSDADLVVFL+ + F +Q R E I EIR QLEACQ++ + +V FE+ P++
Sbjct: 808 GTALRGRSDADLVVFLSCFSQFAEQGNRRAEIISEIRAQLEACQQKMQLEVKFEI--PKR 865
Query: 454 ENPRALSFVLSSP-QLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGE 630
EN R LSF L S L Q V+FDVLPAF+ALGQ Y+P ++YV LI S GE
Sbjct: 866 ENSRVLSFSLKSQTMLDQSVDFDVLPAFNALGQVVSSYRPPSQVYVDLIY---SYNNAGE 922
Query: 631 FSTCFTELQRDFPRNRPTKLKSLIRLVKHWYQTCKK-PHGN-KLPPQYALELLTVYAWEQ 804
+STCFTELQRDF +RPTKLKSLIRLVKHWY+ C K P G LPPQ+ LELLTVYAWEQ
Sbjct: 923 YSTCFTELQRDFIISRPTKLKSLIRLVKHWYRQCNKMPRGRGSLPPQHGLELLTVYAWEQ 982
Query: 805 GSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDPA 984
G F+ AQGF+TVLELV ++++L ++W Y+ ++ V +L+ QL++PRP+ILDPA
Sbjct: 983 GGQSAQFNMAQGFRTVLELVSQYRQLRVYWTVNYDNEDQTVRDFLSRQLRQPRPIILDPA 1042
Query: 985 DPTGNVGGGDTYSWQQLVEGALIWLNYPCFLKWNRSPVGSWKV 1113
DPTGN+ G W L A ++ C + +P+ W V
Sbjct: 1043 DPTGNL--GHNARWDLLATEATACMSALCCTDRDGTPIQPWPV 1083
Score = 261 bits (666), Expect = 2e-69
Identities = 145/346 (41%), Positives = 204/346 (58%), Gaps = 7/346 (2%)
Frame = +1
Query: 103 RDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXXXTT 282
+DLD+FI+DHL PN F+ QV +AI+++ G L+E+C + T
Sbjct: 414 KDLDRFIQDHLKPNPQFQKQVGKAINVILGCLREKCVY------KASRVSKGGSFGRGTD 467
Query: 283 LRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQENP 462
LRG DA+LV+FL + DQ R E +QE++ QLE+ ++ ++ E P Q P
Sbjct: 468 LRGGCDAELVIFLNCFEDYRDQRARRPEILQEMQAQLESWWQDPVPGLSLEF--PEQTVP 525
Query: 463 RALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKE-CKSLGKEGEFST 639
AL F L S L+ ++ ++PAFDA+GQ G KP P++Y L++ C+ GE +
Sbjct: 526 EALQFRLVSTALESWMDVCLVPAFDAVGQLCAGAKPAPQVYSTLLQSGCQG----GEHAA 581
Query: 640 CFTELQRDFPRNRPTKLKSLIRLVKHWYQTC------KKPHGNKLPPQYALELLTVYAWE 801
CF EL+R+F RP KLKSLI LVKHWY+ ++P LPP YALELLT++AWE
Sbjct: 582 CFAELRRNFVNVRPAKLKSLILLVKHWYRQVAAQNKGQQPACASLPPVYALELLTIFAWE 641
Query: 802 QGSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDP 981
QG G+ F AQG +TVLELV +H++LC++W Y+F++P + +L QL+KPRP+ILDP
Sbjct: 642 QGCGEDSFKMAQGLKTVLELVQQHQQLCVYWTVNYSFEDPAIRTHLLGQLQKPRPLILDP 701
Query: 982 ADPTGNVGGGDTYSWQQLVEGALIWLNYPCFLKWNRSPVGSWKVSP 1119
DPT NVG G SW+ L + A + C + V W V P
Sbjct: 702 GDPTWNVGQG---SWELLAQEAAVLETQACLRSTEGTSVQPWDVMP 744
Score = 245 bits (626), Expect = 9e-65
Identities = 140/342 (40%), Positives = 196/342 (57%), Gaps = 3/342 (0%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 273
TP L + L P+ F+ A+ + L+ER + A P R
Sbjct: 6 TPAAALASLVARRLQPSAEFQRAAWRALGALATTLRERGDRAAAQPWRVLKTAKGGSAGR 65
Query: 274 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 453
T LRG D+++V+FL S++D R E ++++ L++ ++ + FE T Q
Sbjct: 66 GTALRGGCDSEIVIFLDCFKSYKDHSVDRAEILKDLWDLLQSWWQKPIPGLNFE--TLWQ 123
Query: 454 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKE-CKSLGKEGE 630
+ P L F L+S L+ ++ ++PAFDALGQ G KP P++Y L+ C+ GE
Sbjct: 124 DRPGVLQFRLASTDLENWMDVSLVPAFDALGQLCAGAKPAPQVYSTLLHSGCQG----GE 179
Query: 631 FSTCFTELQRDFPRNRPTKLKSLIRLVKHWY-QTCKKPHGNK-LPPQYALELLTVYAWEQ 804
+ CF EL+R+F RP KLKSLI LVKHWY Q C++ + LPP YALELLT++AWEQ
Sbjct: 180 HAACFAELRRNFVNVRPAKLKSLILLVKHWYRQVCQEEAKREMLPPAYALELLTIFAWEQ 239
Query: 805 GSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDPA 984
G GK FS AQG +TVL L+ ++++LC+FW Y F+NP V +L+ QLKKPRPVILDPA
Sbjct: 240 GCGKDAFSLAQGLRTVLGLIQEYRQLCVFWTLNYGFENPTVRSFLSSQLKKPRPVILDPA 299
Query: 985 DPTGNVGGGDTYSWQQLVEGALIWLNYPCFLKWNRSPVGSWK 1110
DPT +VG G T+ W L A +PCFL+ V W+
Sbjct: 300 DPTWDVGNGATWHWDILAREAESCYEHPCFLQTAGDTVQPWE 341
>ref|NP_001041558.1| 59 kDa 2'-5'-oligoadenylate synthase-like protein [Canis lupus
familiaris].
Length = 519
Score = 241 bits (615), Expect = 2e-63
Identities = 139/349 (39%), Positives = 197/349 (56%), Gaps = 6/349 (1%)
Frame = +1
Query: 91 DTPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTA---DPVRXXXXXXXX 261
+TP L F+E L P ++ +VK+A + F +++CF+ VR
Sbjct: 9 ETPAERLLAFVERSLQPEGDWKEEVKDAWQRIERFFRDQCFRDELVLDQEVRVLKVVKGG 68
Query: 262 XXXXXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQ 441
TTL SD DLV+FL+ +SF+DQ R I I+++L K + +T Q
Sbjct: 69 SSGKGTTLNYSSDVDLVLFLSCFSSFQDQAAHRRSIISFIKKRLIQHSKNLAYSITIVPQ 128
Query: 442 TPRQENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGK 621
PR+LSF + + + + + DVLPA+DALG ++ +KP+PEIY LI S G
Sbjct: 129 KETTRVPRSLSFQVQARKTSEVIGVDVLPAYDALGHFSSDFKPSPEIYEDLI---TSGGP 185
Query: 622 EGEFSTCFTELQRDFPRNRPTKLKSLIRLVKHWYQTCKKP--HGNKLPPQYALELLTVYA 795
GEFS FTELQR F ++ P KLK+L+R+VKHWY C KP LPP+YA ELLT+YA
Sbjct: 186 PGEFSPSFTELQRHFVKSCPVKLKNLLRMVKHWYLQCLKPKYRNAALPPKYAFELLTIYA 245
Query: 796 WEQGSGKTD-FSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVI 972
WE G+ K+D F+ +GF+ V+EL+L ++ +C +W YY+F+N V ++ +QLK+ RPVI
Sbjct: 246 WEIGTDKSDNFNLDEGFRAVMELLLDYEDICRYWTKYYDFQNETVRIHIKQQLKECRPVI 305
Query: 973 LDPADPTGNVGGGDTYSWQQLVEGALIWLNYPCFLKWNRSPVGSWKVSP 1119
LDPADPT N+ G W + + A L C P W V P
Sbjct: 306 LDPADPTNNL--GSEKRWDLVAKEAARCLRQACCR--TEDPSQGWHVQP 350
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 59,155,023
Number of extensions: 1603470
Number of successful extensions: 6343
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6302
Number of HSP's successfully gapped: 7
Length of query: 619
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 510
Effective length of database: 15,240,880
Effective search space: 7772848800
Effective search space used: 7772848800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AMP01_0025_C08
(1859 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_058132.2| 2'-5'-oligoadenylate synthase 1 isoform 1 [Homo... 499 e-141
Alignment gi|NP_002525.2| 2'-5'-oligoadenylate synthase 1 isoform 2 [Homo... 496 e-140
Alignment gi|NP_001027581.1| 2'-5'-oligoadenylate synthase 1 isoform 3 [H... 495 e-140
Alignment gi|NP_006178.2| 2'-5'-oligoadenylate synthase 3 [Homo sapiens]. 338 1e-92
Alignment gi|NP_058197.2| 2'-5'-oligoadenylate synthase 2 isoform 1 [Homo... 333 4e-91
Alignment gi|NP_002526.2| 2'-5'-oligoadenylate synthase 2 isoform 2 [Homo... 332 5e-91
Alignment gi|NP_003724.1| 59 kDa 2'-5'-oligoadenylate synthase-like prote... 222 1e-57
Alignment gi|NP_937856.1| 59 kDa 2'-5'-oligoadenylate synthase-like prote... 124 3e-28
Alignment gi|NP_001027903.1| 2'-5'-oligoadenylate synthase 2 isoform 3 [H... 59 2e-08
>ref|NP_058132.2| 2'-5'-oligoadenylate synthase 1 isoform 1 [Homo sapiens].
Length = 400
Score = 499 bits (1285), Expect = e-141
Identities = 243/353 (68%), Positives = 281/353 (79%)
Frame = +1
Query: 91 DTPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXX 270
+TP + LDKFIED+LLP+TCFR Q+ AIDI+CGFLKERCF+G++ PV
Sbjct: 6 NTPAKSLDKFIEDYLLPDTCFRMQINHAIDIICGFLKERCFRGSSYPVCVSKVVKGGSSG 65
Query: 271 XXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPR 450
TTLRGRSDADLVVFL+ LT+F+DQL R EFIQEIRRQLEACQ+E+ F V FEVQ PR
Sbjct: 66 KGTTLRGRSDADLVVFLSPLTTFQDQLNRRGEFIQEIRRQLEACQRERAFSVKFEVQAPR 125
Query: 451 QENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGE 630
NPRALSFVLSS QL + VEFDVLPAFDALGQ T GYKPNP+IYV+LI+EC L KEGE
Sbjct: 126 WGNPRALSFVLSSLQLGEGVEFDVLPAFDALGQLTGGYKPNPQIYVKLIEECTDLQKEGE 185
Query: 631 FSTCFTELQRDFPRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYAWEQGS 810
FSTCFTELQRDF + RPTKLKSLIRLVKHWYQ CKK G KLPPQYALELLTVYAWE+GS
Sbjct: 186 FSTCFTELQRDFLKQRPTKLKSLIRLVKHWYQNCKKKLG-KLPPQYALELLTVYAWERGS 244
Query: 811 GKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDPADP 990
KT F+TAQGF+TVLELV+ +++LCI+W YY+FKNP++ +YL QL KPRPVILDPADP
Sbjct: 245 MKTHFNTAQGFRTVLELVINYQQLCIYWTKYYDFKNPIIEKYLRRQLTKPRPVILDPADP 304
Query: 991 TGNVGGGDTYSWQQLVEGALIWLNYPCFLKWNRSPVGSWKVSPEAKAPPQEED 1149
TGN+GGGD W+QL + A WLNYPCF W+ SPV SW + E+ + E D
Sbjct: 305 TGNLGGGDPKGWRQLAQEAEAWLNYPCFKNWDGSPVSSWILLAESNSADDETD 357
>ref|NP_002525.2| 2'-5'-oligoadenylate synthase 1 isoform 2 [Homo sapiens].
Length = 364
Score = 496 bits (1278), Expect = e-140
Identities = 244/351 (69%), Positives = 280/351 (79%), Gaps = 2/351 (0%)
Frame = +1
Query: 91 DTPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXX 270
+TP + LDKFIED+LLP+TCFR Q+ AIDI+CGFLKERCF+G++ PV
Sbjct: 6 NTPAKSLDKFIEDYLLPDTCFRMQINHAIDIICGFLKERCFRGSSYPVCVSKVVKGGSSG 65
Query: 271 XXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPR 450
TTLRGRSDADLVVFL+ LT+F+DQL R EFIQEIRRQLEACQ+E+ F V FEVQ PR
Sbjct: 66 KGTTLRGRSDADLVVFLSPLTTFQDQLNRRGEFIQEIRRQLEACQRERAFSVKFEVQAPR 125
Query: 451 QENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGE 630
NPRALSFVLSS QL + VEFDVLPAFDALGQ T GYKPNP+IYV+LI+EC L KEGE
Sbjct: 126 WGNPRALSFVLSSLQLGEGVEFDVLPAFDALGQLTGGYKPNPQIYVKLIEECTDLQKEGE 185
Query: 631 FSTCFTELQRDFPRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYAWEQGS 810
FSTCFTELQRDF + RPTKLKSLIRLVKHWYQ CKK G KLPPQYALELLTVYAWE+GS
Sbjct: 186 FSTCFTELQRDFLKQRPTKLKSLIRLVKHWYQNCKKKLG-KLPPQYALELLTVYAWERGS 244
Query: 811 GKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDPADP 990
KT F+TAQGF+TVLELV+ +++LCI+W YY+FKNP++ +YL QL KPRPVILDPADP
Sbjct: 245 MKTHFNTAQGFRTVLELVINYQQLCIYWTKYYDFKNPIIEKYLRRQLTKPRPVILDPADP 304
Query: 991 TGNVGGGDTYSWQQLVEGALIWLNYPCFLKWNRSPVGSW--KVSPEAKAPP 1137
TGN+GGGD W+QL + A WLNYPCF W+ SPV SW V P A + P
Sbjct: 305 TGNLGGGDPKGWRQLAQEAEAWLNYPCFKNWDGSPVSSWILLVRPPASSLP 355
>ref|NP_001027581.1| 2'-5'-oligoadenylate synthase 1 isoform 3 [Homo sapiens].
Length = 414
Score = 495 bits (1275), Expect = e-140
Identities = 240/339 (70%), Positives = 275/339 (81%)
Frame = +1
Query: 91 DTPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXX 270
+TP + LDKFIED+LLP+TCFR Q+ AIDI+CGFLKERCF+G++ PV
Sbjct: 6 NTPAKSLDKFIEDYLLPDTCFRMQINHAIDIICGFLKERCFRGSSYPVCVSKVVKGGSSG 65
Query: 271 XXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPR 450
TTLRGRSDADLVVFL+ LT+F+DQL R EFIQEIRRQLEACQ+E+ F V FEVQ PR
Sbjct: 66 KGTTLRGRSDADLVVFLSPLTTFQDQLNRRGEFIQEIRRQLEACQRERAFSVKFEVQAPR 125
Query: 451 QENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGE 630
NPRALSFVLSS QL + VEFDVLPAFDALGQ T GYKPNP+IYV+LI+EC L KEGE
Sbjct: 126 WGNPRALSFVLSSLQLGEGVEFDVLPAFDALGQLTGGYKPNPQIYVKLIEECTDLQKEGE 185
Query: 631 FSTCFTELQRDFPRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYAWEQGS 810
FSTCFTELQRDF + RPTKLKSLIRLVKHWYQ CKK G KLPPQYALELLTVYAWE+GS
Sbjct: 186 FSTCFTELQRDFLKQRPTKLKSLIRLVKHWYQNCKKKLG-KLPPQYALELLTVYAWERGS 244
Query: 811 GKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDPADP 990
KT F+TAQGF+TVLELV+ +++LCI+W YY+FKNP++ +YL QL KPRPVILDPADP
Sbjct: 245 MKTHFNTAQGFRTVLELVINYQQLCIYWTKYYDFKNPIIEKYLRRQLTKPRPVILDPADP 304
Query: 991 TGNVGGGDTYSWQQLVEGALIWLNYPCFLKWNRSPVGSW 1107
TGN+GGGD W+QL + A WLNYPCF W+ SPV SW
Sbjct: 305 TGNLGGGDPKGWRQLAQEAEAWLNYPCFKNWDGSPVSSW 343
>ref|NP_006178.2| 2'-5'-oligoadenylate synthase 3 [Homo sapiens].
Length = 1087
Score = 338 bits (867), Expect = 1e-92
Identities = 182/343 (53%), Positives = 227/343 (66%), Gaps = 3/343 (0%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 273
TP DLDKFI + L PN F QV +A+D +C FLKE CF+ + P++
Sbjct: 750 TPAGDLDKFISEFLQPNRQFLAQVNKAVDTICSFLKENCFRNS--PIKVIKVVKGGSSAK 807
Query: 274 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 453
T LRGRSDADLVVFL+ + F +Q R E I EIR QLEACQ+E++F+V FEV +
Sbjct: 808 GTALRGRSDADLVVFLSCFSQFTEQGNKRAEIISEIRAQLEACQQERQFEVKFEVS--KW 865
Query: 454 ENPRALSFVLSSP-QLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGE 630
ENPR LSF L+S L Q V+FDVLPAFDALGQ G +P+ ++YV LI S GE
Sbjct: 866 ENPRVLSFSLTSQTMLDQSVDFDVLPAFDALGQLVSGSRPSSQVYVDLIH---SYSNAGE 922
Query: 631 FSTCFTELQRDFPRNRPTKLKSLIRLVKHWYQTCKKPHGNK--LPPQYALELLTVYAWEQ 804
+STCFTELQRDF +RPTKLKSLIRLVKHWYQ C K + LPPQ+ LELLTVYAWEQ
Sbjct: 923 YSTCFTELQRDFIISRPTKLKSLIRLVKHWYQQCTKISKGRGSLPPQHGLELLTVYAWEQ 982
Query: 805 GSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDPA 984
G + F+ A+GF+TVLELV ++++LCI+W YN K+ VG +L +QL+KPRP+ILDPA
Sbjct: 983 GGKDSQFNMAEGFRTVLELVTQYRQLCIYWTINYNAKDKTVGDFLKQQLQKPRPIILDPA 1042
Query: 985 DPTGNVGGGDTYSWQQLVEGALIWLNYPCFLKWNRSPVGSWKV 1113
DPTGN+ G W L + A + C + N P+ W V
Sbjct: 1043 DPTGNL--GHNARWDLLAKEAAACTSALCCMGRNGIPIQPWPV 1083
Score = 264 bits (675), Expect = 2e-70
Identities = 148/347 (42%), Positives = 205/347 (59%), Gaps = 6/347 (1%)
Frame = +1
Query: 97 PVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXXX 276
P ++LD+FI+DHL P+ F+ QVK+AIDI+ L E C +
Sbjct: 412 PTKELDRFIQDHLKPSPQFQEQVKKAIDIILRCLHENCVH------KASRVSKGGSFGRG 465
Query: 277 TTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQE 456
T LR D +L++FL T ++DQ R E + E+R QLE+ ++Q + +Q P Q
Sbjct: 466 TDLRDGCDVELIIFLNCFTDYKDQGPRRAEILDEMRAQLESWWQDQV--PSLSLQFPEQN 523
Query: 457 NPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGEFS 636
P AL F L S L+ + +LPAFDA+GQ + G KPNP++Y +L+ S +EGE
Sbjct: 524 VPEALQFQLVSTALKSWTDVSLLPAFDAVGQLSSGTKPNPQVYSRLLT---SGCQEGEHK 580
Query: 637 TCFTELQRDFPRNRPTKLKSLIRLVKHWYQTC------KKPHGNKLPPQYALELLTVYAW 798
CF EL+R+F RP KLK+LI LVKHWY+ K P LPP YALELLT++AW
Sbjct: 581 ACFAELRRNFMNIRPVKLKNLILLVKHWYRQVAAQNKGKGPAPASLPPAYALELLTIFAW 640
Query: 799 EQGSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILD 978
EQG + F+ AQGF+TVL LV +H++LC++W Y+ ++P + +L QL+KPRP++LD
Sbjct: 641 EQGCRQDCFNMAQGFRTVLGLVQQHQQLCVYWTVNYSTEDPAMRMHLLGQLRKPRPLVLD 700
Query: 979 PADPTGNVGGGDTYSWQQLVEGALIWLNYPCFLKWNRSPVGSWKVSP 1119
PADPT NVG G SW+ L + A CFL + + V W V P
Sbjct: 701 PADPTWNVGHG---SWELLAQEAAALGMQACFLSRDGTSVQPWDVMP 744
Score = 253 bits (646), Expect = 4e-67
Identities = 143/344 (41%), Positives = 199/344 (57%), Gaps = 5/344 (1%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 273
TP LD+F+ L P F + + A+ + L+ER + A R
Sbjct: 6 TPAAALDRFVARRLQPRKEFVEKARRALGALAAALRERGGRLGAAAPRVLKTVKGGSSGR 65
Query: 274 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQK--FKVTFEVQTP 447
T L+G D++LV+FL S+ DQ R E + E+R LE+ + ++TF P
Sbjct: 66 GTALKGGCDSELVIFLDCFKSYVDQRARRAEILSEMRASLESWWQNPVPGLRLTF----P 121
Query: 448 RQENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKE-CKSLGKE 624
Q P AL F L+S L+ ++ ++PAF+ LGQ G KP P++Y L+ C+
Sbjct: 122 EQSVPGALQFRLTSVDLEDWMDVSLVPAFNVLGQAGSGVKPKPQVYSTLLNSGCQG---- 177
Query: 625 GEFSTCFTELQRDFPRNRPTKLKSLIRLVKHWY-QTCKKPHGNK-LPPQYALELLTVYAW 798
GE + CFTEL+R+F RP KLK+LI LVKHWY Q C + + LPP YALELLT++AW
Sbjct: 178 GEHAACFTELRRNFVNIRPAKLKNLILLVKHWYHQVCLQGLWKETLPPVYALELLTIFAW 237
Query: 799 EQGSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILD 978
EQG K FS A+G +TVL L+ +H+ LC+FW Y F++P VG++L QLK+PRPVILD
Sbjct: 238 EQGCKKDAFSLAEGLRTVLGLIQQHQHLCVFWTVNYGFEDPAVGQFLQRQLKRPRPVILD 297
Query: 979 PADPTGNVGGGDTYSWQQLVEGALIWLNYPCFLKWNRSPVGSWK 1110
PADPT ++G G + W L + A ++PCFL+ PV SWK
Sbjct: 298 PADPTWDLGNGAAWHWDLLAQEAASCYDHPCFLRGMGDPVQSWK 341
>ref|NP_058197.2| 2'-5'-oligoadenylate synthase 2 isoform 1 [Homo sapiens].
Length = 719
Score = 333 bits (853), Expect = 4e-91
Identities = 180/353 (50%), Positives = 235/353 (66%), Gaps = 6/353 (1%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 273
TP LDKFI++ L PN CF Q+ A++I+ FLKE CF+ + ++
Sbjct: 343 TPGHLLDKFIKEFLQPNKCFLEQIDSAVNIIRTFLKENCFRQSTAKIQIVRGGSTAKG-- 400
Query: 274 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEAC--QKEQKFKVTFEVQTP 447
T L+ SDADLVVF L S+ Q R + ++EI QL+A +KE++ +V+FE P
Sbjct: 401 -TALKTGSDADLVVFHNSLKSYTSQKNERHKIVKEIHEQLKAFWREKEEELEVSFE--PP 457
Query: 448 RQENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEG 627
+ + PR LSF L S L + V FDVLPAF+ALGQ + G P+PE+Y LI KS G
Sbjct: 458 KWKAPRVLSFSLKSKVLNESVSFDVLPAFNALGQLSSGSTPSPEVYAGLIDLYKSSDLPG 517
Query: 628 -EFSTCFTELQRDFPRNRPTKLKSLIRLVKHWYQTCK---KPHGNKLPPQYALELLTVYA 795
EFSTCFT LQR+F R+RPTKLK LIRLVKHWY+ C+ KP G+ LPP+YALELLT+YA
Sbjct: 518 GEFSTCFTVLQRNFIRSRPTKLKDLIRLVKHWYKECERKLKPKGS-LPPKYALELLTIYA 576
Query: 796 WEQGSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVIL 975
WEQGSG DF TA+GF+TVLELV ++++LCIFW+ YNF++ V ++L QL+K RPVIL
Sbjct: 577 WEQGSGVPDFDTAEGFRTVLELVTQYQQLCIFWKVNYNFEDETVRKFLLSQLQKTRPVIL 636
Query: 976 DPADPTGNVGGGDTYSWQQLVEGALIWLNYPCFLKWNRSPVGSWKVSPEAKAP 1134
DPA+PTG+VGGGD + W L + A WL+ PCF +P+ WKV P + P
Sbjct: 637 DPAEPTGDVGGGDRWCWHLLAKEAKEWLSSPCFKDGTGNPIPPWKV-PTMQTP 688
Score = 212 bits (539), Expect = 1e-54
Identities = 136/348 (39%), Positives = 183/348 (52%), Gaps = 7/348 (2%)
Frame = +1
Query: 97 PVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKER----CFQGTADPVRXXXXXXXXX 264
P + L FI+++L P +T + E ++ +C L+E QG A
Sbjct: 12 PAQKLGWFIQEYLKPYEECQTLIDEMVNTICDVLQEPEQFPLVQGVA---------IGGS 62
Query: 265 XXXXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQT 444
T LRG SD LV+F + L F+DQ + + + + + +L+ C + K FE+Q
Sbjct: 63 YGRKTVLRGNSDGTLVLFFSDLKQFQDQKRSQRDILDKTGDKLKFCLFTKWLKNNFEIQK 122
Query: 445 PRQENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKEC-KSLGK 621
F + Q + F+VL AF+AL P+P IY +L + K+
Sbjct: 123 SLD------GFTIQVFTKNQRISFEVLAAFNALSL---NDNPSPWIYRELKRSLDKTNAS 173
Query: 622 EGEFSTCFTELQRDFPRNRPTKLKSLIRLVKHWYQTCKKPHGN--KLPPQYALELLTVYA 795
GEF+ CFTELQ+ F NRP KLK LI L+KHW+Q C+K + L P YALELLTVYA
Sbjct: 174 PGEFAVCFTELQQKFFDNRPGKLKDLILLIKHWHQQCQKKIKDLPSLSP-YALELLTVYA 232
Query: 796 WEQGSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVIL 975
WEQG K +F A+G +TVLEL+ +KLCI+W YNF++ + L QL+ RPVIL
Sbjct: 233 WEQGCRKDNFDIAEGVRTVLELIKCQEKLCIYWMVNYNFEDETIRNILLHQLQSARPVIL 292
Query: 976 DPADPTGNVGGGDTYSWQQLVEGALIWLNYPCFLKWNRSPVGSWKVSP 1119
DP DPT NV GD WQ L + A WL P N P SW V P
Sbjct: 293 DPVDPTNNV-SGDKICWQWLKKEAQTWLTSPNL--DNELPAPSWNVLP 337
>ref|NP_002526.2| 2'-5'-oligoadenylate synthase 2 isoform 2 [Homo sapiens].
Length = 687
Score = 332 bits (852), Expect = 5e-91
Identities = 178/346 (51%), Positives = 232/346 (67%), Gaps = 6/346 (1%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 273
TP LDKFI++ L PN CF Q+ A++I+ FLKE CF+ + ++
Sbjct: 343 TPGHLLDKFIKEFLQPNKCFLEQIDSAVNIIRTFLKENCFRQSTAKIQIVRGGSTAKG-- 400
Query: 274 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEAC--QKEQKFKVTFEVQTP 447
T L+ SDADLVVF L S+ Q R + ++EI QL+A +KE++ +V+FE P
Sbjct: 401 -TALKTGSDADLVVFHNSLKSYTSQKNERHKIVKEIHEQLKAFWREKEEELEVSFE--PP 457
Query: 448 RQENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEG 627
+ + PR LSF L S L + V FDVLPAF+ALGQ + G P+PE+Y LI KS G
Sbjct: 458 KWKAPRVLSFSLKSKVLNESVSFDVLPAFNALGQLSSGSTPSPEVYAGLIDLYKSSDLPG 517
Query: 628 -EFSTCFTELQRDFPRNRPTKLKSLIRLVKHWYQTCK---KPHGNKLPPQYALELLTVYA 795
EFSTCFT LQR+F R+RPTKLK LIRLVKHWY+ C+ KP G+ LPP+YALELLT+YA
Sbjct: 518 GEFSTCFTVLQRNFIRSRPTKLKDLIRLVKHWYKECERKLKPKGS-LPPKYALELLTIYA 576
Query: 796 WEQGSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVIL 975
WEQGSG DF TA+GF+TVLELV ++++LCIFW+ YNF++ V ++L QL+K RPVIL
Sbjct: 577 WEQGSGVPDFDTAEGFRTVLELVTQYQQLCIFWKVNYNFEDETVRKFLLSQLQKTRPVIL 636
Query: 976 DPADPTGNVGGGDTYSWQQLVEGALIWLNYPCFLKWNRSPVGSWKV 1113
DPA+PTG+VGGGD + W L + A WL+ PCF +P+ WKV
Sbjct: 637 DPAEPTGDVGGGDRWCWHLLAKEAKEWLSSPCFKDGTGNPIPPWKV 682
Score = 212 bits (539), Expect = 1e-54
Identities = 136/348 (39%), Positives = 183/348 (52%), Gaps = 7/348 (2%)
Frame = +1
Query: 97 PVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKER----CFQGTADPVRXXXXXXXXX 264
P + L FI+++L P +T + E ++ +C L+E QG A
Sbjct: 12 PAQKLGWFIQEYLKPYEECQTLIDEMVNTICDVLQEPEQFPLVQGVA---------IGGS 62
Query: 265 XXXXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQT 444
T LRG SD LV+F + L F+DQ + + + + + +L+ C + K FE+Q
Sbjct: 63 YGRKTVLRGNSDGTLVLFFSDLKQFQDQKRSQRDILDKTGDKLKFCLFTKWLKNNFEIQK 122
Query: 445 PRQENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKEC-KSLGK 621
F + Q + F+VL AF+AL P+P IY +L + K+
Sbjct: 123 SLD------GFTIQVFTKNQRISFEVLAAFNALSL---NDNPSPWIYRELKRSLDKTNAS 173
Query: 622 EGEFSTCFTELQRDFPRNRPTKLKSLIRLVKHWYQTCKKPHGN--KLPPQYALELLTVYA 795
GEF+ CFTELQ+ F NRP KLK LI L+KHW+Q C+K + L P YALELLTVYA
Sbjct: 174 PGEFAVCFTELQQKFFDNRPGKLKDLILLIKHWHQQCQKKIKDLPSLSP-YALELLTVYA 232
Query: 796 WEQGSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVIL 975
WEQG K +F A+G +TVLEL+ +KLCI+W YNF++ + L QL+ RPVIL
Sbjct: 233 WEQGCRKDNFDIAEGVRTVLELIKCQEKLCIYWMVNYNFEDETIRNILLHQLQSARPVIL 292
Query: 976 DPADPTGNVGGGDTYSWQQLVEGALIWLNYPCFLKWNRSPVGSWKVSP 1119
DP DPT NV GD WQ L + A WL P N P SW V P
Sbjct: 293 DPVDPTNNV-SGDKICWQWLKKEAQTWLTSPNL--DNELPAPSWNVLP 337
>ref|NP_003724.1| 59 kDa 2'-5'-oligoadenylate synthase-like protein isoform a [Homo
sapiens].
Length = 514
Score = 222 bits (565), Expect = 1e-57
Identities = 130/347 (37%), Positives = 190/347 (54%), Gaps = 7/347 (2%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTA---DPVRXXXXXXXXX 264
TP LD F+ L P+ ++ +V +A+ V FL++ FQG VR
Sbjct: 10 TPASRLDSFVAQWLQPHREWKEEVLDAVRTVEEFLRQEHFQGKRGLDQDVRVLKVVKVGS 69
Query: 265 XXXXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQT 444
T LR + +LV FL+ SF++ + ++ ++ I + + Q + + E
Sbjct: 70 FGNGTVLRSTREVELVAFLSCFHSFQEAAKHHKDVLRLIWKTM--WQSQDLLDLGLEDLR 127
Query: 445 PRQENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKE 624
Q P AL F + + + + ++PA+ ALG P +P PE+YV LIK C G
Sbjct: 128 MEQRVPDALVFTIQTRGTAEPITVTIVPAYRALGPSLPNSQPPPEVYVSLIKAC---GGP 184
Query: 625 GEFSTCFTELQRDFPRNRPTKLKSLIRLVKHWYQT---CKKPHGNKLPPQYALELLTVYA 795
G F F+ELQR+F ++RPTKLKSL+RLVKHWYQ + P N LPP YALELLT+YA
Sbjct: 185 GNFCPSFSELQRNFVKHRPTKLKSLLRLVKHWYQQYVKARSPRAN-LPPLYALELLTIYA 243
Query: 796 WEQGSGKTD-FSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVI 972
WE G+ + + F +GF TV++L+L+++ +CI+W YY N ++ + +QLKK RP+I
Sbjct: 244 WEMGTEEDENFMLDEGFTTVMDLLLEYEVICIYWTKYYTLHNAIIEDCVRKQLKKERPII 303
Query: 973 LDPADPTGNVGGGDTYSWQQLVEGALIWLNYPCFLKWNRSPVGSWKV 1113
LDPADPT NV G Y W + + A L C +P+ SW V
Sbjct: 304 LDPADPTLNVAEG--YRWDIVAQRASQCLKQDCCYDNRENPISSWNV 348
>ref|NP_937856.1| 59 kDa 2'-5'-oligoadenylate synthase-like protein isoform b [Homo
sapiens].
Length = 255
Score = 124 bits (311), Expect = 3e-28
Identities = 77/227 (33%), Positives = 115/227 (50%), Gaps = 3/227 (1%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTA---DPVRXXXXXXXXX 264
TP LD F+ L P+ ++ +V +A+ V FL++ FQG VR
Sbjct: 10 TPASRLDSFVAQWLQPHREWKEEVLDAVRTVEEFLRQEHFQGKRGLDQDVRVLKVVKVGS 69
Query: 265 XXXXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQT 444
T LR + +LV FL+ SF++ + ++ ++ I + + Q + + E
Sbjct: 70 FGNGTVLRSTREVELVAFLSCFHSFQEAAKHHKDVLRLIWKTM--WQSQDLLDLGLEDLR 127
Query: 445 PRQENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKE 624
Q P AL F + + + + ++PA+ ALG P +P PE+YV LIK C G
Sbjct: 128 MEQRVPDALVFTIQTRGTAEPITVTIVPAYRALGPSLPNSQPPPEVYVSLIKAC---GGP 184
Query: 625 GEFSTCFTELQRDFPRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQ 765
G F F+ELQR+F ++RPTKLKSL+RLVKHWYQ P + PQ
Sbjct: 185 GNFCPSFSELQRNFVKHRPTKLKSLLRLVKHWYQQAHHPGSGRPHPQ 231
>ref|NP_001027903.1| 2'-5'-oligoadenylate synthase 2 isoform 3 [Homo sapiens].
Length = 172
Score = 58.9 bits (141), Expect = 2e-08
Identities = 45/163 (27%), Positives = 72/163 (44%), Gaps = 6/163 (3%)
Frame = +1
Query: 97 PVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKER----CFQGTADPVRXXXXXXXXX 264
P + L FI+++L P +T + E ++ +C L+E QG A
Sbjct: 12 PAQKLGWFIQEYLKPYEECQTLIDEMVNTICDVLQEPEQFPLVQGVA---------IGGS 62
Query: 265 XXXXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQT 444
T LRG SD LV+F + L F+DQ + + + + + +L+ C + K FE+Q
Sbjct: 63 YGRKTVLRGNSDGTLVLFFSDLKQFQDQKRSQRDILDKTGDKLKFCLFTKWLKNNFEIQK 122
Query: 445 PRQENPRALSFVLSSPQLQQEVEFDVLPAFDALGQ--WTPGYK 567
F + Q + F+VL AF+AL + W G K
Sbjct: 123 SLD------GFTIQVFTKNQRISFEVLAAFNALSKHCWVSGEK 159
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 57,748,216
Number of extensions: 1529804
Number of successful extensions: 6051
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 5987
Number of HSP's successfully gapped: 13
Length of query: 619
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 510
Effective length of database: 14,704,088
Effective search space: 7499084880
Effective search space used: 7499084880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AMP01_0025_C08
(1859 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035982.2| 2'-5' oligoadenylate synthetase 1G [Mus musculu... 430 e-120
Alignment gi|NP_660212.2| 2'-5'-oligoadenylate synthase 1A [Mus musculus]. 427 e-119
Alignment gi|NP_660135.2| 2'-5'oligoadenylate synthetase 1F [Mus musculus]. 360 2e-99
Alignment gi|NP_001077394.1| 2'-5'-oligoadenylate synthase 1B [Mus muscul... 344 2e-94
Alignment gi|NP_660262.2| 2'-5' oligoadenylate synthetase 2 [Mus musculus]. 336 3e-92
Alignment gi|NP_291019.1| 2'-5' oligoadenylate synthetase 1C [Mus musculu... 335 7e-92
Alignment gi|NP_660261.1| 2'-5'-oligoadenylate synthase 3 [Mus musculus]. 327 1e-89
Alignment gi|NP_660211.2| 2'-5' oligoadenylate synthetase 1E [Mus musculu... 326 4e-89
Alignment gi|NP_598654.1| 2'-5' oligoadenylate synthetase 1D [Mus musculu... 324 2e-88
Alignment gi|NP_660263.1| 2'-5' oligoadenylate synthetase 1H isoform 1 [M... 318 1e-86
>ref|NP_035982.2| 2'-5' oligoadenylate synthetase 1G [Mus musculus].
Length = 367
Score = 430 bits (1105), Expect = e-120
Identities = 219/356 (61%), Positives = 259/356 (72%), Gaps = 1/356 (0%)
Frame = +1
Query: 97 PVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXXX 276
P LDKFIED+LLP+T F VK A+++VC FLKERCFQG A PVR
Sbjct: 9 PAWTLDKFIEDYLLPDTTFGADVKSAVNVVCDFLKERCFQGAAHPVRVSKVVKGGSSGKG 68
Query: 277 TTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQE 456
TTL+GRSDADLVVFL LTSFEDQL R EFI+EI++QL Q E++F+V FEVQ+
Sbjct: 69 TTLKGRSDADLVVFLNNLTSFEDQLNRRGEFIKEIKKQLYEVQHERRFRVKFEVQSSWWP 128
Query: 457 NPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGEFS 636
N R+LSF LS+P L QEVEFDVLPAFD LG + KPNP IY LI EC SLGK+GEFS
Sbjct: 129 NARSLSFKLSAPHLHQEVEFDVLPAFDVLGHGSINKKPNPLIYTILIWECTSLGKDGEFS 188
Query: 637 TCFTELQRDFPRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYAWEQGSGK 816
TCFTELQR+F + RPTKLKSLIRLVKHWYQ CK+ G LPPQYALELLTVYAWEQG+G
Sbjct: 189 TCFTELQRNFLKQRPTKLKSLIRLVKHWYQLCKEKLGKPLPPQYALELLTVYAWEQGNGC 248
Query: 817 TDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDPADPTG 996
+F+TAQGF+TVLELV+ ++ L I+W YY+F++ V +YL QL+K RPVILDPADPTG
Sbjct: 249 NEFNTAQGFRTVLELVINYQHLRIYWTKYYDFQHKEVSKYLHRQLRKARPVILDPADPTG 308
Query: 997 NVGGGDTYSWQQLVEGALIWLNYPCFLKWNRSPVGSWKVSPEAKAP-PQEEDI*TC 1161
NV GG+ W++L E A +WL YPCF+K + S V SW V P Q E+ TC
Sbjct: 309 NVAGGNPEGWRRLAEEADVWLWYPCFMKNDGSRVSSWDVPTVVPVPFEQVEENWTC 364
>ref|NP_660212.2| 2'-5'-oligoadenylate synthase 1A [Mus musculus].
Length = 367
Score = 427 bits (1099), Expect = e-119
Identities = 216/356 (60%), Positives = 259/356 (72%), Gaps = 1/356 (0%)
Frame = +1
Query: 97 PVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXXX 276
P LDKFIED+LLP+T F VK A+++VC FLKERCFQG A PVR
Sbjct: 9 PAWTLDKFIEDYLLPDTTFGADVKSAVNVVCDFLKERCFQGAAHPVRVSKVVKGGSSGKG 68
Query: 277 TTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQE 456
TTL+G+SDADLVVFL LTSFEDQL R EFI+EI++QL Q E++F+V FEVQ+
Sbjct: 69 TTLKGKSDADLVVFLNNLTSFEDQLNRRGEFIKEIKKQLYEVQHERRFRVKFEVQSSWWP 128
Query: 457 NPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGEFS 636
N R+LSF LS+P L QEVEFDVLPAFD LG KP+P IY LI+EC SLGK+GEFS
Sbjct: 129 NARSLSFKLSAPHLHQEVEFDVLPAFDVLGHVNTSSKPDPRIYAILIEECTSLGKDGEFS 188
Query: 637 TCFTELQRDFPRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYAWEQGSGK 816
TCFTELQR+F + RPTKLKSLIRLVKHWYQ CK+ G LPPQYALELLTV+AWEQG+G
Sbjct: 189 TCFTELQRNFLKQRPTKLKSLIRLVKHWYQLCKEKLGKPLPPQYALELLTVFAWEQGNGC 248
Query: 817 TDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDPADPTG 996
+F+TAQGF+TVLELV+ ++ L I+W YY+F++ V +YL QL+K RPVILDPADPTG
Sbjct: 249 YEFNTAQGFRTVLELVINYQHLRIYWTKYYDFQHQEVSKYLHRQLRKARPVILDPADPTG 308
Query: 997 NVGGGDTYSWQQLVEGALIWLNYPCFLKWNRSPVGSWKVSPEAKAP-PQEEDI*TC 1161
NV GG+ W++L E A +WL YPCF+K + S V SW V P Q E+ TC
Sbjct: 309 NVAGGNPEGWRRLAEEADVWLWYPCFIKKDGSRVSSWDVPTVVPVPFEQVEENWTC 364
>ref|NP_660135.2| 2'-5'oligoadenylate synthetase 1F [Mus musculus].
Length = 364
Score = 360 bits (924), Expect = 2e-99
Identities = 188/352 (53%), Positives = 232/352 (65%), Gaps = 5/352 (1%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 273
TP +LDKFI DHLLP++ F + + +D + FLKERCFQG PVR
Sbjct: 8 TPACELDKFIRDHLLPDSSFHAEARADVDFIGAFLKERCFQGATHPVRVSRVVMGGSYDE 67
Query: 274 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 453
T L+ +S+A +VVFL LTSFE+QL+ R EFI+EIR+ L Q E+ FKV FEVQ+ +
Sbjct: 68 HTALKSKSEAKMVVFLNNLTSFEEQLKRRGEFIEEIRKHLCQLQDEKPFKVKFEVQSSEE 127
Query: 454 ENPRALSFVLSSPQLQQEVEFDVLPAFDAL-----GQWTPGYKPNPEIYVQLIKECKSLG 618
N R+LSF LSSP+LQQEVEFDV PA+D L ++ Y N +IY QLI EC +L
Sbjct: 128 PNSRSLSFKLSSPELQQEVEFDVQPAYDVLYELRNNKYAELYLYN-KIYAQLIHECTTLK 186
Query: 619 KEGEFSTCFTELQRDFPRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYAW 798
KEGEFS CFT+L + F +R KLK+LIRLVKHWYQ CK+ G LPPQYALELLTVYAW
Sbjct: 187 KEGEFSICFTDLHQSFLEDRAPKLKNLIRLVKHWYQLCKEKLGKPLPPQYALELLTVYAW 246
Query: 799 EQGSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILD 978
E GS +F+TAQGF+TVLELV K+K L I+W YY+F+ V YL + L+K RPVILD
Sbjct: 247 ESGSRDCEFNTAQGFRTVLELVTKYKWLRIYWTVYYDFRKTKVSEYLHKMLQKVRPVILD 306
Query: 979 PADPTGNVGGGDTYSWQQLVEGALIWLNYPCFLKWNRSPVGSWKVSPEAKAP 1134
PADPT NV G + W L + A IWL CF + VG W V + + P
Sbjct: 307 PADPTRNVAGTNLLGWGLLAKEAAIWLQSSCFRNCDTCLVGPWGVPMKVEIP 358
>ref|NP_001077394.1| 2'-5'-oligoadenylate synthase 1B [Mus musculus].
Length = 376
Score = 344 bits (882), Expect = 2e-94
Identities = 187/346 (54%), Positives = 227/346 (65%)
Frame = +1
Query: 97 PVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXXX 276
P LDKFIE+HL P+T F ++E ID +C LK+R F+G PVR
Sbjct: 9 PASKLDKFIENHL-PDTSFCADLREVIDALCALLKDRSFRG---PVRRMRASKGVKGKG- 63
Query: 277 TTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQE 456
TTL+GRSDADLVVFL LTSFEDQL + I+EI++QL Q E++ V FEV + R
Sbjct: 64 TTLKGRSDADLVVFLNNLTSFEDQLNQQGVLIKEIKKQLCEVQHERRCGVKFEVHSLRSP 123
Query: 457 NPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGEFS 636
N RALSF LS+P L +EV+FDVLPA+D L KPN + Y LI GKEG+ S
Sbjct: 124 NSRALSFKLSAPDLLKEVKFDVLPAYDLLDHLNILKKPNQQFYANLISGRTPPGKEGKLS 183
Query: 637 TCFTELQRDFPRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYAWEQGSGK 816
CF L++ F RPTKLK LIRLV HWYQ CK+ G+ LPPQYALELLTVYAWE GS
Sbjct: 184 ICFMGLRKYFLNCRPTKLKRLIRLVTHWYQLCKEKLGDPLPPQYALELLTVYAWEYGSRV 243
Query: 817 TDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDPADPTG 996
T F+TAQGF+TVLELV K+K+L I+W YY+F++ V YL +QLKK RPVILDPADPT
Sbjct: 244 TKFNTAQGFRTVLELVTKYKQLRIYWTVYYDFRHQEVSEYLHQQLKKDRPVILDPADPTR 303
Query: 997 NVGGGDTYSWQQLVEGALIWLNYPCFLKWNRSPVGSWKVSPEAKAP 1134
N+ G + W++L A WL YPCF + SPV SW+V E P
Sbjct: 304 NIAGLNPKDWRRLAGEAATWLQYPCFKYRDGSPVCSWEVPTEVGVP 349
>ref|NP_660262.2| 2'-5' oligoadenylate synthetase 2 [Mus musculus].
Length = 742
Score = 336 bits (862), Expect = 3e-92
Identities = 177/343 (51%), Positives = 228/343 (66%), Gaps = 3/343 (0%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 273
TP L+KFI+D L PN F Q+KEA+DI+C FLK CF + V
Sbjct: 382 TPSHLLNKFIKDFLQPNKLFLKQIKEAVDIICSFLKNVCFLNSDTKV--LKTVKGGSTAK 439
Query: 274 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 453
T L+ SDAD+VVFL+ L S++ R +F+QEI++QLE + Q+++VTFE+ +
Sbjct: 440 GTALKRGSDADIVVFLSSLESYDSLKTNRSQFVQEIQKQLEEFVQAQEWEVTFEIS--KW 497
Query: 454 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLG-KEGE 630
+ PR LSF L S L + VEFDVLPA+DALGQ + PE Y LI+ C S KEGE
Sbjct: 498 KAPRVLSFTLKSKTLNESVEFDVLPAYDALGQLRSDFTLRPEAYKDLIELCASQDIKEGE 557
Query: 631 FSTCFTELQRDFPRNRPTKLKSLIRLVKHWYQTCKKPHGNK--LPPQYALELLTVYAWEQ 804
FS CFTELQR+F + RPTKLKSL+RL+KHWY+ ++ K LPP+YALELLTVYAWEQ
Sbjct: 558 FSICFTELQRNFIQTRPTKLKSLLRLIKHWYKQYERKMKPKASLPPKYALELLTVYAWEQ 617
Query: 805 GSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDPA 984
GSG DF A+GF+TVL+LV+K+++LCIFW YNF+ + ++L Q++K RPVILDPA
Sbjct: 618 GSGTDDFDIAEGFRTVLDLVIKYRQLCIFWTVNYNFEEEYMRKFLLTQIQKKRPVILDPA 677
Query: 985 DPTGNVGGGDTYSWQQLVEGALIWLNYPCFLKWNRSPVGSWKV 1113
DPTG+VGGGD + W L E A WL+ PCF + V WKV
Sbjct: 678 DPTGDVGGGDRWCWHLLAEEAKEWLSSPCFQVEQKGLVQPWKV 720
Score = 192 bits (488), Expect = 7e-49
Identities = 125/345 (36%), Positives = 177/345 (51%), Gaps = 4/345 (1%)
Frame = +1
Query: 97 PVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXXX 276
P + L+ +I+++L PN Q+ +A+D + L+ + PV+
Sbjct: 61 PSQKLEGYIQENLKPNRESLKQIDQAVDAIWDLLRSQI------PVKEVAKGGSYGRE-- 112
Query: 277 TTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQE 456
T LRG SD LV+F+ F+DQ++ ++ ++ I L+ +K+ +
Sbjct: 113 TALRGCSDGTLVLFMDCFQQFQDQIKYQDAYLDVIELWLKIHEKKSV------------K 160
Query: 457 NPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSL-GKEGEF 633
+ AL +S P Q + +LP F+ L P+ +YV L K + GEF
Sbjct: 161 HEHALVVQVSVPG--QRILLQLLPVFNPLRS---NENPSSCVYVDLKKSMDQVRASPGEF 215
Query: 634 STCFTELQRDFPRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQ---YALELLTVYAWEQ 804
S CFT LQ+ F + P +LK LI LVKHWY+ C++ PPQ YALELLTVYAWEQ
Sbjct: 216 SDCFTTLQQRFFKKYPQRLKDLILLVKHWYEQCQEKWKTP-PPQPLLYALELLTVYAWEQ 274
Query: 805 GSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDPA 984
G DF AQG +TVL L+ + +LC++W YNF++ V L QL+ RPVILDP
Sbjct: 275 GCQAEDFDMAQGVRTVLRLIQRPTELCVYWTVNYNFEDETVRNILLHQLRSQRPVILDPT 334
Query: 985 DPTGNVGGGDTYSWQQLVEGALIWLNYPCFLKWNRSPVGSWKVSP 1119
DPT NVG D + W+ L E A+ WL P SP W V P
Sbjct: 335 DPTNNVGKDDGF-WELLTEEAMAWLYSPSLN--TESPAPYWDVLP 376
>ref|NP_291019.1| 2'-5' oligoadenylate synthetase 1C [Mus musculus].
Length = 362
Score = 335 bits (859), Expect = 7e-92
Identities = 174/345 (50%), Positives = 227/345 (65%), Gaps = 5/345 (1%)
Frame = +1
Query: 103 RDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXXXTT 282
R+LD+FI D+L P+T F T+++ ID + FLKERCFQG A PVR T
Sbjct: 11 RELDEFICDYLFPDTTFLTELRADIDSISAFLKERCFQGAAHPVRVSRVVMGGSYDEHTA 70
Query: 283 LRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQENP 462
L+G+S+A +V+F LTSFE+QL+ R EF++EI++ L Q+E+ FKV FEVQ+ + N
Sbjct: 71 LKGKSEAKMVLFFNNLTSFEEQLKRRGEFVEEIQKHLCQLQQEKPFKVKFEVQSSEEPNS 130
Query: 463 RALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPE----IYVQLIKECKSLGKEGE 630
R+LSF LSSP+LQQEVEFDV PA+D L + P+ +Y QLI EC +L KEG+
Sbjct: 131 RSLSFKLSSPELQQEVEFDVQPAYDVLYELRNNTYAEPQFYNKVYAQLIHECTTLEKEGD 190
Query: 631 FSTCFTELQRDFPRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYAWEQGS 810
FS CFT+L ++F R R KL +LIRLVKHWYQ CK+ LPPQYALELLTVY WE +
Sbjct: 191 FSICFTDLHQNFMRYRAPKLWNLIRLVKHWYQLCKEKLREPLPPQYALELLTVYVWEHSN 250
Query: 811 -GKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDPAD 987
+ +TA+ F+T LELV +K L I+W YY+F++ V YL QLKK RP+ILDPAD
Sbjct: 251 KNQEKVTTAKNFRTFLELVAYYKNLRIYWTWYYDFRHQEVCAYLCRQLKKARPLILDPAD 310
Query: 988 PTGNVGGGDTYSWQQLVEGALIWLNYPCFLKWNRSPVGSWKVSPE 1122
PT NV G D +W L + A W+ CF + S V +W +SPE
Sbjct: 311 PTRNVAGSDLQAWDLLAKEAQTWMQSSCFRNCDMSFVPTWDLSPE 355
>ref|NP_660261.1| 2'-5'-oligoadenylate synthase 3 [Mus musculus].
Length = 1138
Score = 327 bits (839), Expect = 1e-89
Identities = 173/343 (50%), Positives = 223/343 (65%), Gaps = 3/343 (0%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 273
T DLDKFI + L PN F TQVK A+D +C FLKE CF+ + ++
Sbjct: 801 TLAEDLDKFISEFLQPNRHFLTQVKRAVDTICSFLKENCFRNST--IKVLKVVKGGSSAK 858
Query: 274 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 453
T L+GRSDADLVVFL+ F +Q R E I EI+ LEACQ+ F V FEV ++
Sbjct: 859 GTALQGRSDADLVVFLSCFRQFSEQGSHRAEIISEIQAHLEACQQMHSFDVKFEVS--KR 916
Query: 454 ENPRALSFVLSSPQL-QQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGE 630
+NPR LSF L+S L Q V+FDVLPAFDALGQ G +P+P +Y LI C + G E
Sbjct: 917 KNPRVLSFTLTSQTLLDQSVDFDVLPAFDALGQLRSGSRPDPRVYTDLIHSCSNAG---E 973
Query: 631 FSTCFTELQRDFPRNRPTKLKSLIRLVKHWYQTCKKPHGNK--LPPQYALELLTVYAWEQ 804
FSTCFTELQRDF +RPTKLKSLIRLVK+WYQ C K K LPPQ+ LELLTVYAWEQ
Sbjct: 974 FSTCFTELQRDFITSRPTKLKSLIRLVKYWYQQCNKTIKGKGSLPPQHGLELLTVYAWEQ 1033
Query: 805 GSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDPA 984
G F+ A+GF+TVLEL++++++LC++W Y+ ++ +G +L QL+KPRPVILDPA
Sbjct: 1034 GGQNPQFNMAEGFRTVLELIVQYRQLCVYWTINYSAEDKTIGDFLKMQLRKPRPVILDPA 1093
Query: 985 DPTGNVGGGDTYSWQQLVEGALIWLNYPCFLKWNRSPVGSWKV 1113
DPTGN+ G W L + A ++ + C + + +P+ W V
Sbjct: 1094 DPTGNL--GHNARWDLLAKEATVYASALCCVDRDGNPIKPWPV 1134
Score = 231 bits (590), Expect = 1e-60
Identities = 138/341 (40%), Positives = 186/341 (54%), Gaps = 2/341 (0%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 273
TP LDK + +L P F V+ A+ + L++ +G+ P R
Sbjct: 6 TPAGALDKLVAHNLHPAPEFTAAVRGALGSLNITLQQHRARGSQRP-RVIRIAKGGAYAR 64
Query: 274 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 453
T LRG +D +LV+FL SF DQ E + +R LE+ +TFE +
Sbjct: 65 GTALRGGTDVELVIFLDCFQSFGDQKTCHSETLGAMRMLLESWGGHPGPGLTFEFSQSKA 124
Query: 454 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKE-CKSLGKEGE 630
R L F L+S + ++ ++PAFD LGQ G KP P +Y L+ C++ GE
Sbjct: 125 S--RILQFRLASADGEHWIDVSLVPAFDVLGQPRSGVKPTPNVYSSLLSSHCQA----GE 178
Query: 631 FSTCFTELQRDFPRNRPTKLKSLIRLVKHWY-QTCKKPHGNKLPPQYALELLTVYAWEQG 807
+S CFTE +++F RP KLK+LI LVKHWY Q + LPP YALELLT++AWEQG
Sbjct: 179 YSACFTEPRKNFVNTRPAKLKNLILLVKHWYHQVQTRAVRATLPPSYALELLTIFAWEQG 238
Query: 808 SGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDPAD 987
GK FS AQG +TVL L+ K LCIFW Y F++P VG +L QLK+PRPVILDPAD
Sbjct: 239 CGKDSFSLAQGLRTVLALIQHSKYLCIFWTENYGFEDPAVGEFLRRQLKRPRPVILDPAD 298
Query: 988 PTGNVGGGDTYSWQQLVEGALIWLNYPCFLKWNRSPVGSWK 1110
PT +VG G + W L + A + CF + + V W+
Sbjct: 299 PTWDVGNGTAWRWDVLAQEAESSFSQQCFKQASGVLVQPWE 339
Score = 229 bits (584), Expect = 6e-60
Identities = 133/359 (37%), Positives = 197/359 (54%), Gaps = 7/359 (1%)
Frame = +1
Query: 97 PVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXXX 276
P +DLD FI+DHL P+ F+ QVK+AID + L+E+ +
Sbjct: 464 PSKDLDCFIQDHLRPSPQFQQQVKQAIDAILCCLREKSVY------KVLRVSKGGSFGRG 517
Query: 277 TTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQE 456
T LRG D +LV+F L F+ Q + E +++++ QL + ++ + ++
Sbjct: 518 TDLRGSCDVELVIFYKTLGDFKGQKPHQAEILRDMQAQLRHWCQNPVPGLSLQFI---EQ 574
Query: 457 NPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKE-CKSLGKEGEF 633
P AL L+S L V+ VLPAFDA+G G KP P++Y L+ C++ GE
Sbjct: 575 KPNALQLQLASTDLSNRVDLSVLPAFDAVGPLKSGTKPQPQVYSSLLSSGCQA----GEH 630
Query: 634 STCFTELQRDFPRNRPTKLKSLIRLVKHWYQTCKKPH------GNKLPPQYALELLTVYA 795
+ CF EL+R+F P KLKSL+ LVKHWY+ + G+ PP YALELLT++A
Sbjct: 631 AACFAELRRNFINTCPPKLKSLMLLVKHWYRQVVTRYKGGEAAGDAPPPAYALELLTIFA 690
Query: 796 WEQGSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVIL 975
WEQG G+ FS A+G +T+L L+ +H+ LCI+W Y+ ++P + +L QL+K RP++L
Sbjct: 691 WEQGCGEQKFSLAEGLRTILRLIQQHQSLCIYWTVNYSVQDPAIRAHLLCQLRKARPLVL 750
Query: 976 DPADPTGNVGGGDTYSWQQLVEGALIWLNYPCFLKWNRSPVGSWKVSPEAKAPPQEEDI 1152
DPADPT NVG GD W+ L + A + C + + V W V+P ED+
Sbjct: 751 DPADPTWNVGQGD---WKLLAQEAAALGSQVCLQSGDGTLVPPWDVTPALLHQTLAEDL 806
>ref|NP_660211.2| 2'-5' oligoadenylate synthetase 1E [Mus musculus].
Length = 356
Score = 326 bits (835), Expect = 4e-89
Identities = 177/350 (50%), Positives = 225/350 (64%), Gaps = 7/350 (2%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 273
TP+ LD FIED LLP+T F T+++ ID + FLKERCFQG P+R
Sbjct: 8 TPIWRLDNFIEDQLLPDTTFLTELRADIDSISAFLKERCFQGATHPMRVARVVMGGSYDE 67
Query: 274 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 453
L+GRS+A++VVF LTSFEDQL+ ++ FI+EIR+ L Q+E+ K+ FEVQ+ +
Sbjct: 68 HNALKGRSEANMVVFFNDLTSFEDQLKWQQVFIEEIRKHLLQLQQEKPCKLKFEVQSSEE 127
Query: 454 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPE------IYVQLIKECKSL 615
N R+L+F L SP+ QQEVEFDV PA+DAL + GY + E +Y QLI EC +L
Sbjct: 128 PNTRSLTFKLCSPERQQEVEFDVQPAYDAL--YEGGYCKSFESINYNKVYAQLIHECTTL 185
Query: 616 GKEGEFSTCFTELQRDFPRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYA 795
KEGEFS CFT+L + F R R KL +LIRLVKHWYQ CK+ LPPQYALELLTVY
Sbjct: 186 EKEGEFSICFTDLHQSFLRYRAPKLWNLIRLVKHWYQLCKEKLRGPLPPQYALELLTVYV 245
Query: 796 WEQG-SGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVI 972
WE G AQ F+TVLELV K+K L I+W +Y+F+ P + YL Q+KK RP+I
Sbjct: 246 WEFGVQDSFGLHAAQCFRTVLELVTKYKCLLIYWTWFYDFR-PEISDYLHGQIKKARPLI 304
Query: 973 LDPADPTGNVGGGDTYSWQQLVEGALIWLNYPCFLKWNRSPVGSWKVSPE 1122
LDPADPT NV G D +W L + A W++ F + S V W+VSPE
Sbjct: 305 LDPADPTRNVAGSDLQAWDLLAKEAQTWIHSNFFRNCDMSLVNGWEVSPE 354
>ref|NP_598654.1| 2'-5' oligoadenylate synthetase 1D [Mus musculus].
Length = 361
Score = 324 bits (830), Expect = 2e-88
Identities = 178/349 (51%), Positives = 226/349 (64%), Gaps = 6/349 (1%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 273
TP+ LDKFIED LLP+T F T+++ ID + FL ERCFQG A PVR
Sbjct: 8 TPIWRLDKFIEDQLLPDTTFLTELRADIDSISAFLMERCFQGAAHPVRVSRVVMGGCYNE 67
Query: 274 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 453
T L+GRS+A++VVFL LTSFEDQ + FI+EI R L Q+E+ K+ FEVQ+P++
Sbjct: 68 YTVLKGRSEANMVVFLINLTSFEDQFNGQVVFIEEIWRHLLQLQQEKLCKLKFEVQSPKE 127
Query: 454 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKP-----NPEIYVQLIKECKSLG 618
N R LSF LS P+ Q E+EFDV PA+DAL + +KP ++Y QL EC +L
Sbjct: 128 PNSRFLSFKLSCPERQHELEFDVQPAYDALYE-VRHFKPFDSSNYNKVYAQLTHECTTLE 186
Query: 619 KEGEFSTCFTELQRDFPRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYAW 798
KEGEFS CFT+L + F R R KL +LIRLVKHWYQ CK+ LPPQYALELLTVY W
Sbjct: 187 KEGEFSICFTDLHQSFLRYRAPKLWNLIRLVKHWYQLCKEKLRGPLPPQYALELLTVYVW 246
Query: 799 EQGSGKT-DFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVIL 975
E G + TAQ F+TVLELV K+K+L I+W Y+F++ + YL Q+KK RP+IL
Sbjct: 247 EYGIHENPGLHTAQCFRTVLELVTKYKRLRIYWTWCYDFQHE-ISDYLQGQIKKARPLIL 305
Query: 976 DPADPTGNVGGGDTYSWQQLVEGALIWLNYPCFLKWNRSPVGSWKVSPE 1122
DPADPT NV G D +W L + A IW++ F + S V +W+V PE
Sbjct: 306 DPADPTRNVAGSDLQAWDLLAKEAQIWIDSTFFTNHDMSIVEAWEVMPE 354
>ref|NP_660263.1| 2'-5' oligoadenylate synthetase 1H isoform 1 [Mus musculus].
Length = 369
Score = 318 bits (814), Expect = 1e-86
Identities = 171/350 (48%), Positives = 224/350 (64%), Gaps = 5/350 (1%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 273
TP LDKFIE HLL + F T+++ ++ + FLKERCFQG A P+R
Sbjct: 15 TPAWRLDKFIEGHLLGDITFLTELRTDVNSISAFLKERCFQGAAHPMRVSRVVMGGSYNR 74
Query: 274 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 453
T L+GRS+ DL+VF LT F+DQ +L++E I+EI++ L Q+E++ + F+VQ+ Q
Sbjct: 75 YTVLKGRSEVDLLVFFNNLTCFDDQFKLQKEVIEEIQKHLCQFQQEKRLREKFKVQSSDQ 134
Query: 454 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEI----YVQLIKECKSLGK 621
N R++SF LS P+ QQEVEF + A+DAL + N EI Y +LI+EC LGK
Sbjct: 135 PNFRSVSFKLSYPKFQQEVEFHMQTAYDALYEVRRKENHNCEIYNKVYARLIRECTMLGK 194
Query: 622 EGEFSTCFTELQRDFPRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYAWE 801
EGEF+ CF ELQ+DF RP +LK+LI LVKHWYQ CK+ LPPQYALELLTVYAWE
Sbjct: 195 EGEFNICFMELQQDFLWKRPCELKNLICLVKHWYQLCKEKLREPLPPQYALELLTVYAWE 254
Query: 802 -QGSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILD 978
+ K + TA+GF+TVLEL+ K+ L I+W YY+ + V YL Q+K+ P+ILD
Sbjct: 255 HELPDKHETQTARGFRTVLELITKYLCLRIYWTLYYDVLHEQVNAYLYSQVKRVSPLILD 314
Query: 979 PADPTGNVGGGDTYSWQQLVEGALIWLNYPCFLKWNRSPVGSWKVSPEAK 1128
PADPT NV G + W L E A WL+YPCF + S V SW V P+ K
Sbjct: 315 PADPTWNVAGLNLQGWCILAEEAKAWLDYPCFKNRDGSRVSSWDVPPDKK 364
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 48,853,917
Number of extensions: 1289824
Number of successful extensions: 4973
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 4911
Number of HSP's successfully gapped: 16
Length of query: 619
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 512
Effective length of database: 12,403,707
Effective search space: 6350697984
Effective search space used: 6350697984
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AMP01_0025_C08
(1859 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999468.1| 2'-5'-oligoadenylate synthase 1 [Sus scrofa]. 597 e-171
Alignment gi|NP_001026966.1| 2'-5'-oligoadenylate synthase 2 [Sus scrofa]. 327 1e-89
Alignment gi|NP_001026960.1| 59 kDa 2'-5'-oligoadenylate synthase-like pr... 196 3e-50
Alignment gi|XP_003359156.1| PREDICTED: two pore calcium channel protein ... 141 1e-33
>ref|NP_999468.1| 2'-5'-oligoadenylate synthase 1 [Sus scrofa].
Length = 349
Score = 597 bits (1538), Expect = e-171
Identities = 290/338 (85%), Positives = 304/338 (89%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 273
TP RDLDKFIEDHLLPNTCFRTQVKEAIDIVC FLKERCFQGTADPVR
Sbjct: 6 TPARDLDKFIEDHLLPNTCFRTQVKEAIDIVCRFLKERCFQGTADPVRVSKVVKGGSSGK 65
Query: 274 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 453
TTLRGRSDADLVVFLTKLTSFEDQL+ R EFIQEIRRQLEACQ+EQKFKVTFEVQ+PR+
Sbjct: 66 GTTLRGRSDADLVVFLTKLTSFEDQLRRRGEFIQEIRRQLEACQREQKFKVTFEVQSPRR 125
Query: 454 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGEF 633
ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKS GKEGEF
Sbjct: 126 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSRGKEGEF 185
Query: 634 STCFTELQRDFPRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYAWEQGSG 813
STCFTELQRDF RNRPTKLKSLIRLVKHWYQTCKK HGNKLPPQYALELLTVYAWEQGS
Sbjct: 186 STCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKTHGNKLPPQYALELLTVYAWEQGSR 245
Query: 814 KTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDPADPT 993
KTDFSTAQGFQTVLELVLKH+KLCIFWEAYY+F NPVVGR + +QLKKPRPVILDPADPT
Sbjct: 246 KTDFSTAQGFQTVLELVLKHQKLCIFWEAYYDFTNPVVGRCMLQQLKKPRPVILDPADPT 305
Query: 994 GNVGGGDTYSWQQLVEGALIWLNYPCFLKWNRSPVGSW 1107
GNVGGGDT+SWQ+L + A +WL YPC + S VG+W
Sbjct: 306 GNVGGGDTHSWQRLAQEARVWLGYPCCKNLDGSLVGAW 343
>ref|NP_001026966.1| 2'-5'-oligoadenylate synthase 2 [Sus scrofa].
Length = 707
Score = 327 bits (839), Expect = 1e-89
Identities = 179/352 (50%), Positives = 228/352 (64%), Gaps = 5/352 (1%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 273
TP LDKFI+D L P+ F Q K+A+DI+C FLKE CF+ +A V+
Sbjct: 341 TPSHHLDKFIKDFLQPDKTFLDQTKKAVDIICKFLKENCFRHSATKVQKIVKGGSTAKG- 399
Query: 274 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 453
T SDADLVVF L S+ Q R I+EI +QLEACQ+ Q F+VTFE+ +
Sbjct: 400 --TALKNSDADLVVFTDLLKSYTSQKNERCTIIKEIHKQLEACQQAQDFEVTFEIS--KW 455
Query: 454 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKS---LGKE 624
+ PR LSF L S L + V FDVLPAF+ALG G P+P+IY +LI KS LG
Sbjct: 456 KAPRVLSFSLKSKVLNECVHFDVLPAFNALGDLKSGSAPSPKIYAELISLYKSSDILG-- 513
Query: 625 GEFSTCFTELQRDFPRNRPTKLKSLIRLVKHWYQTCKKPHGNK--LPPQYALELLTVYAW 798
GEFSTCFT+LQRDF R++PTKLK LIRLVKHWY+ C++ K LPP+YALELLT+YAW
Sbjct: 514 GEFSTCFTKLQRDFVRSQPTKLKDLIRLVKHWYKWCERKLKQKGSLPPKYALELLTIYAW 573
Query: 799 EQGSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILD 978
E+GSG F TA+GF+TVL+L+ +++ LCIFW YNF N +V +L Q+++ RPVILD
Sbjct: 574 EKGSGVLSFDTAEGFRTVLKLITEYQHLCIFWTVNYNFDNEIVRNFLLAQMQRTRPVILD 633
Query: 979 PADPTGNVGGGDTYSWQQLVEGALIWLNYPCFLKWNRSPVGSWKVSPEAKAP 1134
PADPT +VGGG+ + W L + A WL CF + P+ SW V P + P
Sbjct: 634 PADPTADVGGGNRWCWHLLAKEATEWLCSLCFQDGSGYPIQSWDV-PAVQTP 684
Score = 218 bits (556), Expect = 7e-57
Identities = 133/345 (38%), Positives = 178/345 (51%), Gaps = 2/345 (0%)
Frame = +1
Query: 91 DTPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXX 270
D P + L +F++++L P+ + Q+ + +D +C L Q
Sbjct: 10 DRPPQKLGEFVQNNLRPSEDCQKQIDQTVDTICKVL-----QDAEQLPLVISVARGGSYG 64
Query: 271 XXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPR 450
T LRG SD LV+F++ L F+DQ + E + +I QL+ CQ +K + E+Q
Sbjct: 65 RKTVLRGNSDGSLVIFISDLEKFQDQSKNHSELLSQIWAQLKCCQLTRKLEAKMEIQN-F 123
Query: 451 QENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSL-GKEG 627
P + +Q + F +LPAF+ALG KP+P Y L + + G
Sbjct: 124 NSGPTTIQLFAK----EQSITFKILPAFNALGL---SEKPSPWTYRDLKRSLDMMKASPG 176
Query: 628 EFSTCFTELQRDFPRNRPTKLKSLIRLVKHWYQTCKKPHGNKLP-PQYALELLTVYAWEQ 804
EFS CFTELQ F N P KLK LI LVK+WYQ C++ P YALELLTVYAWEQ
Sbjct: 177 EFSVCFTELQERFFNNLPRKLKDLILLVKYWYQQCQEKLAVSFQLPVYALELLTVYAWEQ 236
Query: 805 GSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDPA 984
G G DF A+G +TVL L+ K +LC++W YNF++ V L QL+ RPVILDP
Sbjct: 237 GCGAEDFDIAEGLRTVLGLIRKPGELCVYWTVNYNFEDETVRNVLLGQLRARRPVILDPT 296
Query: 985 DPTGNVGGGDTYSWQQLVEGALIWLNYPCFLKWNRSPVGSWKVSP 1119
DPT NV D W L A WL++ N SP SW V P
Sbjct: 297 DPTNNV-SQDNSCWHLLKLEAETWLSF-----LNESPGPSWNVLP 335
>ref|NP_001026960.1| 59 kDa 2'-5'-oligoadenylate synthase-like protein [Sus scrofa].
Length = 348
Score = 196 bits (499), Expect = 3e-50
Identities = 128/345 (37%), Positives = 185/345 (53%), Gaps = 3/345 (0%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 273
TP LD F+ L P+ + +V EA+ V FL ++CF G +
Sbjct: 6 TPASKLDTFVAKCLHPHKECKEEVLEAVRTVKKFLWQQCFPG-----KNVQVLEVGSFGN 60
Query: 274 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 453
T LR ++ +LV FL SF + L + + ++ + L +CQ F + +
Sbjct: 61 GTVLRDSTEVELVAFLCCFRSFRETEDL-DNMLDQLSKTLCSCQGLLAFDLKDVWLV--E 117
Query: 454 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGEF 633
E RA++F + + L+ + F ++PA+ L P P+ E+YV LI+ K G F
Sbjct: 118 EVFRAIAFTIWTKNLEGPITFTIMPAYRDL---VPHGGPSAEVYVDLIEARKP---PGNF 171
Query: 634 STCFTELQRDFPRNRPTKLKSLIRLVKHWYQTCKKPHGN--KLPPQYALELLTVYAWEQG 807
S F +LQR F ++RP KLKSL+RLVKHWY K +LPP YALELLT+YAWE G
Sbjct: 172 SPSFAKLQRSFVKHRPAKLKSLLRLVKHWYLKYVKARCPIARLPPLYALELLTIYAWEVG 231
Query: 808 SGKTD-FSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDPA 984
+ + F +G TV+ L+ +++ LCI+W YY F+NP++ ++ EQLKK RP+ILDPA
Sbjct: 232 TKAHERFHLDRGLVTVMCLLQEYQSLCIYWTNYYKFQNPIIEDFVREQLKKERPIILDPA 291
Query: 985 DPTGNVGGGDTYSWQQLVEGALIWLNYPCFLKWNRSPVGSWKVSP 1119
DPT NV G Y W + + A L C N+SPV W + P
Sbjct: 292 DPTYNVAYG--YRWDIVSQRARQCLK-QCCCHNNKSPVPPWYIKP 333
>ref|XP_003359156.1| PREDICTED: two pore calcium channel protein 1 [Sus scrofa].
Length = 323
Score = 141 bits (356), Expect = 1e-33
Identities = 63/66 (95%), Positives = 64/66 (96%)
Frame = +1
Query: 955 KPRPVILDPADPTGNVGGGDTYSWQQLVEGALIWLNYPCFLKWNRSPVGSWKVSPEAKAP 1134
K +PVILDPADPTGNVGGGDTYSWQQLVEGALIWLNYPCFLKWNRSPVGSW VSPEAKAP
Sbjct: 258 KEQPVILDPADPTGNVGGGDTYSWQQLVEGALIWLNYPCFLKWNRSPVGSWNVSPEAKAP 317
Query: 1135 PQEEDI 1152
PQEEDI
Sbjct: 318 PQEEDI 323
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 41,489,226
Number of extensions: 1874654
Number of successful extensions: 3809
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3789
Number of HSP's successfully gapped: 5
Length of query: 619
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 514
Effective length of database: 8,729,747
Effective search space: 4487089958
Effective search space used: 4487089958
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AMP01_0025_C08
(1859 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 535 e-149
>Sscrofa_Chr14
|| Length = 153851969
Score = 535 bits (270), Expect = e-149
Identities = 291/298 (97%)
Strand = Plus / Plus
Query: 254 agggtggctcctcgggcaaaggcacgaccctcaggggccgatcagatgctgacctcgtcg 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41258545 agggtggctcctcgggcaaaggcacgaccctcaggggccgatcagatgctgacctcgtcg 41258604
Query: 314 tcttcctcaccaagctcacaagttttgaggatcagcttcagctccgagaagaattcatcc 373
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 41258605 tcttcctcaccaagctcacaagttttgaggatcagcttcggctccgaggagaattcatcc 41258664
Query: 374 aggaaattcggagacagctggaagcctgtcaaaaagaacaaaagtttaaagtgacgtttg 433
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 41258665 aggaaattcggagacagctggaagcctgtcaaagagaacaaaagtttaaagtgacgtttg 41258724
Query: 434 aggtccagactccacgacaggagaacccccgtgccctcagcttcgtgctcagctcccccc 493
||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 41258725 aggtccagagtccacgacgggagaacccccgtgctctcagcttcgtgctcagctcccccc 41258784
Query: 494 agctccagcaggaggtggagtttgatgtcctgcccgcctttgatgccctgggtcagtg 551
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 41258785 agctccagcaggaggtggagtttgatgtcctgcccgcctttgatgccctgggtgagtg 41258842
Score = 535 bits (270), Expect = e-149
Identities = 291/298 (97%)
Strand = Plus / Plus
Query: 254 agggtggctcctcgggcaaaggcacgaccctcaggggccgatcagatgctgacctcgtcg 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41261746 agggtggctcctcgggcaaaggcacgaccctcaggggccgatcagatgctgacctcgtcg 41261805
Query: 314 tcttcctcaccaagctcacaagttttgaggatcagcttcagctccgagaagaattcatcc 373
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 41261806 tcttcctcaccaagctcacaagttttgaggatcagcttcggctccgaggagaattcatcc 41261865
Query: 374 aggaaattcggagacagctggaagcctgtcaaaaagaacaaaagtttaaagtgacgtttg 433
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 41261866 aggaaattcggagacagctggaagcctgtcaaagagaacaaaagtttaaagtgacgtttg 41261925
Query: 434 aggtccagactccacgacaggagaacccccgtgccctcagcttcgtgctcagctcccccc 493
||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 41261926 aggtccagagtccacgacgggagaacccccgtgctctcagcttcgtgctcagctcccccc 41261985
Query: 494 agctccagcaggaggtggagtttgatgtcctgcccgcctttgatgccctgggtcagtg 551
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 41261986 agctccagcaggaggtggagtttgatgtcctgcccgcctttgatgccctgggtgagtg 41262043
Score = 426 bits (215), Expect = e-116
Identities = 230/235 (97%)
Strand = Plus / Plus
Query: 729 gtgtaagaagcctcatggaaataaactgcccccacagtatgccctggagctcctgacagt 788
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41265364 gtgtaagaagactcatggaaataaactgcccccacagtatgccctggagctcctgacagt 41265423
Query: 789 ctatgcatgggagcaaggaagcgggaaaacagattttagcacagctcagggatttcagac 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41265424 ctatgcatgggagcaaggaagcgggaaaacagattttagcacagctcagggatttcagac 41265483
Query: 849 tgttttggaattagtcctaaagcataagaagctttgcatcttctgggaagcatattataa 908
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
Sbjct: 41265484 tgttttggaattagtcctaaagcataagaagctttgcatcttctggaaaacatattatga 41265543
Query: 909 ctttaaaaaccctgtcgttggacgatatctgactgagcaactcaagaaacccagg 963
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 41265544 ctttaaaaaccctgtcattggacgatatctgactgagcaactcaagaaacccagg 41265598
Score = 337 bits (170), Expect = 1e-89
Identities = 182/186 (97%)
Strand = Plus / Plus
Query: 544 ggtcagtggaccccgggctacaaacccaacccggaaatctacgtccagcttatcaaagag 603
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 41263089 ggtcagtggaccccgggctacaaacccaacccggaaatctacgtccagcttatccaagag 41263148
Query: 604 tgcaagtccctagggaaagagggcgagttttccacctgcttcacggagctgcagcgagac 663
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41263149 tgcaagtcccgagggaaagagggcgagttttccacctgcttcacggagctgcagcgagac 41263208
Query: 664 ttcccgaggaaccgaccaaccaagctgaagagcctcatccgccttgtcaagcactggtac 723
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41263209 ttcctgaggaaccgacctaccaagctgaagagcctcatccgccttgtcaagcactggtac 41263268
Query: 724 cagacg 729
||||||
Sbjct: 41263269 cagacg 41263274
Score = 313 bits (158), Expect = 2e-82
Identities = 161/162 (99%)
Strand = Plus / Plus
Query: 1330 ttcacagagagtatttccccataggcctctccccaccagagaggagaggtctctaagcca 1389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41268451 ttcacagagagtatttccccataggcctctccccaccagagaggagaggtctctaagcca 41268510
Query: 1390 caacaggaaagacttagacaagagtggaaccccagcctggactttcttctgtatacctgg 1449
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 41268511 caacaggaaagacttagacaagagtggaaccccagcctggactttcttctgtgtacctgg 41268570
Query: 1450 tggagagttatggtccaaagtatcgtcattacaataaaaata 1491
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41268571 tggagagttatggtccaaagtatcgtcattacaataaaaata 41268612
Score = 303 bits (153), Expect = 2e-79
Identities = 156/157 (99%)
Strand = Plus / Plus
Query: 960 caggcctgtgattctggacccggctgaccctacaggcaacgttggtggtggagacacata 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41266685 caggcctgtgattctggacccggctgaccctacaggcaacgttggtggtggagacacata 41266744
Query: 1020 cagctggcagcagctggtagaaggggcactaatctggctgaattatccgtgctttttgaa 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41266745 cagctggcagcagctggtagaaggggcactaatctggctgaattatccgtgctttttgaa 41266804
Query: 1080 atggaacaggtcaccggtgggatcctggaaggtgtcg 1116
|||||||||||||||||||||||||||||| ||||||
Sbjct: 41266805 atggaacaggtcaccggtgggatcctggaatgtgtcg 41266841
Score = 295 bits (149), Expect = 4e-77
Identities = 161/165 (97%)
Strand = Plus / Plus
Query: 92 atacccctgttagggacctagacaagttcatcgaagaccacctcctgccaaacacatgtt 151
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 41260734 atacccctgctagggacctagacaagttcatcgaagaccacctcctgccaaacacgtgtt 41260793
Query: 152 tccgaacgcaggtcaaggaagccatcgacatcgtctgcggtttcctgaaggagaggtgct 211
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 41260794 tccgaacgcaggtcaaggaagccatcgacatcgtctgcagtttcctgaaggagaggtgct 41260853
Query: 212 tccaggggaccgccgaccctgttcgcgtctccaaagttgtgaagg 256
|||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 41260854 tccaggggaccgcccaccctgttcgcgtctccaaagttgtgaagg 41260898
Score = 281 bits (142), Expect = 7e-73
Identities = 142/142 (100%)
Strand = Plus / Plus
Query: 1116 gcctgaggccaaggcccctccacaggaggaagatatctagacgtgcaccagagcatctta 1175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41268237 gcctgaggccaaggcccctccacaggaggaagatatctagacgtgcaccagagcatctta 41268296
Query: 1176 agagtgaggtccctggagccgcctggaccagccccctcatccctagggtcggggcccgga 1235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41268297 agagtgaggtccctggagccgcctggaccagccccctcatccctagggtcggggcccgga 41268356
Query: 1236 gccttcatccctagagggccat 1257
||||||||||||||||||||||
Sbjct: 41268357 gccttcatccctagagggccat 41268378
Score = 272 bits (137), Expect = 6e-70
Identities = 143/145 (98%)
Strand = Plus / Plus
Query: 112 gacaagttcatcgaagaccacctcctgccaaacacatgtttccgaacgcaggtcaaggaa 171
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 41257553 gacaagttcatcgaagaccacctcctgccaaacacgtgtttccgaacgcaggtcaaggaa 41257612
Query: 172 gccatcgacatcgtctgcggtttcctgaaggagaggtgcttccaggggaccgccgaccct 231
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 41257613 gccatcgacatcgtctgcggtttcctgaaggagaggtgcttctaggggaccgccgaccct 41257672
Query: 232 gttcgcgtctccaaagttgtgaagg 256
|||||||||||||||||||||||||
Sbjct: 41257673 gttcgcgtctccaaagttgtgaagg 41257697
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 39,945,334
Number of extensions: 326
Number of successful extensions: 326
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 326
Number of HSP's successfully gapped: 9
Length of query: 1859
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1837
Effective length of database: 2,808,408,574
Effective search space: 5159046550438
Effective search space used: 5159046550438
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)