Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AMP01_0050_G01
(639 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002695672.1| PREDICTED: similar to C-C motif chemokine 23... 118 5e-27
Alignment gi|XP_585475.2| PREDICTED: chemokine (C-C motif) ligand 15 [Bos... 118 5e-27
Alignment gi|NP_776936.1| C-C motif chemokine 3 precursor [Bos taurus]. 70 1e-12
Alignment gi|NP_001068615.1| C-C motif chemokine 4 precursor [Bos taurus]. 69 2e-12
Alignment gi|XP_002695671.1| PREDICTED: chemokine (C-C motif) ligand 3-li... 68 6e-12
Alignment gi|XP_873462.2| PREDICTED: chemokine (C-C motif) ligand 3-like ... 68 6e-12
Alignment gi|XP_002695669.1| PREDICTED: macrophage inflammatory protein-1... 68 7e-12
Alignment gi|XP_603768.2| PREDICTED: macrophage inflammatory protein-1 al... 68 7e-12
Alignment gi|XP_002695668.1| PREDICTED: macrophage inflammatory protein-1... 67 2e-11
Alignment gi|XP_002702141.1| PREDICTED: macrophage inflammatory protein-1... 67 2e-11
>ref|XP_002695672.1| PREDICTED: similar to C-C motif chemokine 23 precursor
(Small-inducible cytokine A23) (Macrophage inflammatory
protein 3) (MIP-3) (Myeloid progenitor inhibitory factor
1) (MPIF-1) (CK-beta-8) (CKB-8) [Bos taurus].
Length = 146
Score = 118 bits (295), Expect = 5e-27
Identities = 54/93 (58%), Positives = 73/93 (78%)
Frame = +3
Query: 228 HSIQSHGGFHRPADCCFSYTPRKIQCVNMKDYTLTTSECSKPAVIFLTKKGQRVCTNPDD 407
HS+ S GGF+RP DCC SYTPR I+CV M++Y T+S CS+PAVIF+TKKGQ VC +P++
Sbjct: 39 HSL-SQGGFYRPTDCCMSYTPRNIRCVFMENYIETSSACSRPAVIFITKKGQSVCADPNN 97
Query: 408 EQVQKCMSELKLTSTTKDLKSILLKKEHFWRRP 506
E VQKC SEL+L S +DL+S+L++++ R P
Sbjct: 98 EGVQKCKSELRLGSAVEDLRSLLVERKRLDRAP 130
>ref|XP_585475.2| PREDICTED: chemokine (C-C motif) ligand 15 [Bos taurus].
Length = 146
Score = 118 bits (295), Expect = 5e-27
Identities = 54/93 (58%), Positives = 73/93 (78%)
Frame = +3
Query: 228 HSIQSHGGFHRPADCCFSYTPRKIQCVNMKDYTLTTSECSKPAVIFLTKKGQRVCTNPDD 407
HS+ S GGF+RP DCC SYTPR I+CV M++Y T+S CS+PAVIF+TKKGQ VC +P++
Sbjct: 39 HSL-SQGGFYRPTDCCMSYTPRNIRCVFMENYIETSSACSRPAVIFITKKGQSVCADPNN 97
Query: 408 EQVQKCMSELKLTSTTKDLKSILLKKEHFWRRP 506
E VQKC SEL+L S +DL+S+L++++ R P
Sbjct: 98 EGVQKCKSELRLGSAVEDLRSLLVERKRLDRAP 130
>ref|NP_776936.1| C-C motif chemokine 3 precursor [Bos taurus].
Length = 93
Score = 70.1 bits (170), Expect = 1e-12
Identities = 31/67 (46%), Positives = 46/67 (68%)
Frame = +3
Query: 249 GFHRPADCCFSYTPRKIQCVNMKDYTLTTSECSKPAVIFLTKKGQRVCTNPDDEQVQKCM 428
G P CCFSY R++ + DY T+S+CSKP VIF TKKG++VC NP ++ VQ+ +
Sbjct: 27 GADTPTACCFSYVARQLSRKIVADYFETSSQCSKPGVIFQTKKGRQVCANPTEDWVQEYI 86
Query: 429 SELKLTS 449
++L+L +
Sbjct: 87 TDLELNA 93
>ref|NP_001068615.1| C-C motif chemokine 4 precursor [Bos taurus].
Length = 92
Score = 69.3 bits (168), Expect = 2e-12
Identities = 35/81 (43%), Positives = 50/81 (61%)
Frame = +3
Query: 201 LAMMKNVKQHSIQSHGGFHRPADCCFSYTPRKIQCVNMKDYTLTTSECSKPAVIFLTKKG 380
L +M ++ + G P CCFSYT RKI + DY T+S CS+PAV+F TKKG
Sbjct: 11 LVLMAAFCSPALSAPMGSDPPTACCFSYTLRKIPRNFVNDYFETSSLCSQPAVVFQTKKG 70
Query: 381 QRVCTNPDDEQVQKCMSELKL 443
++VC NP + VQ+ + +L+L
Sbjct: 71 RQVCANPSEPWVQEYVDDLEL 91
>ref|XP_002695671.1| PREDICTED: chemokine (C-C motif) ligand 3-like [Bos taurus].
Length = 93
Score = 68.2 bits (165), Expect = 6e-12
Identities = 30/81 (37%), Positives = 52/81 (64%)
Frame = +3
Query: 201 LAMMKNVKQHSIQSHGGFHRPADCCFSYTPRKIQCVNMKDYTLTTSECSKPAVIFLTKKG 380
L + + H+ + G + P CCFS+ R+I + DY T+S+CSKP +IF TK+G
Sbjct: 11 LLLTAALSAHTCSASLGANTPTACCFSFVSRQIPRKFVDDYYETSSQCSKPGIIFKTKRG 70
Query: 381 QRVCTNPDDEQVQKCMSELKL 443
++VC +P ++ VQ+ +++L+L
Sbjct: 71 RQVCADPSEDWVQEYITDLEL 91
>ref|XP_873462.2| PREDICTED: chemokine (C-C motif) ligand 3-like [Bos taurus].
Length = 93
Score = 68.2 bits (165), Expect = 6e-12
Identities = 30/81 (37%), Positives = 52/81 (64%)
Frame = +3
Query: 201 LAMMKNVKQHSIQSHGGFHRPADCCFSYTPRKIQCVNMKDYTLTTSECSKPAVIFLTKKG 380
L + + H+ + G + P CCFS+ R+I + DY T+S+CSKP +IF TK+G
Sbjct: 11 LLLTAALSAHTCSASLGANTPTACCFSFVSRQIPRKFVDDYYETSSQCSKPGIIFKTKRG 70
Query: 381 QRVCTNPDDEQVQKCMSELKL 443
++VC +P ++ VQ+ +++L+L
Sbjct: 71 RQVCADPSEDWVQEYITDLEL 91
>ref|XP_002695669.1| PREDICTED: macrophage inflammatory protein-1 alpha-like isoform 2
[Bos taurus].
Length = 93
Score = 67.8 bits (164), Expect = 7e-12
Identities = 30/81 (37%), Positives = 51/81 (62%)
Frame = +3
Query: 201 LAMMKNVKQHSIQSHGGFHRPADCCFSYTPRKIQCVNMKDYTLTTSECSKPAVIFLTKKG 380
L + + H+ + + P DCCFS+ R+I + DY T+S+CSKP +IF TK+G
Sbjct: 11 LLLTAALSAHTCSATFSTNTPTDCCFSFVSRQIPRKLVDDYYETSSQCSKPGIIFKTKRG 70
Query: 381 QRVCTNPDDEQVQKCMSELKL 443
++VC +P ++ VQ+ + +L+L
Sbjct: 71 RQVCADPSEDWVQEYIIDLEL 91
>ref|XP_603768.2| PREDICTED: macrophage inflammatory protein-1 alpha-like isoform 2
[Bos taurus].
Length = 93
Score = 67.8 bits (164), Expect = 7e-12
Identities = 30/81 (37%), Positives = 51/81 (62%)
Frame = +3
Query: 201 LAMMKNVKQHSIQSHGGFHRPADCCFSYTPRKIQCVNMKDYTLTTSECSKPAVIFLTKKG 380
L + + H+ + + P DCCFS+ R+I + DY T+S+CSKP +IF TK+G
Sbjct: 11 LLLTAALSAHTCSATFSTNTPTDCCFSFVSRQIPRKLVDDYYETSSQCSKPGIIFKTKRG 70
Query: 381 QRVCTNPDDEQVQKCMSELKL 443
++VC +P ++ VQ+ + +L+L
Sbjct: 71 RQVCADPSEDWVQEYIIDLEL 91
>ref|XP_002695668.1| PREDICTED: macrophage inflammatory protein-1 alpha-like isoform 1
[Bos taurus].
Length = 124
Score = 66.6 bits (161), Expect = 2e-11
Identities = 28/61 (45%), Positives = 44/61 (72%)
Frame = +3
Query: 261 PADCCFSYTPRKIQCVNMKDYTLTTSECSKPAVIFLTKKGQRVCTNPDDEQVQKCMSELK 440
P DCCFS+ R+I + DY T+S+CSKP +IF TK+G++VC +P ++ VQ+ + +L+
Sbjct: 62 PTDCCFSFVSRQIPRKLVDDYYETSSQCSKPGIIFKTKRGRQVCADPSEDWVQEYIIDLE 121
Query: 441 L 443
L
Sbjct: 122 L 122
>ref|XP_002702141.1| PREDICTED: macrophage inflammatory protein-1 alpha-like [Bos
taurus].
Length = 124
Score = 66.6 bits (161), Expect = 2e-11
Identities = 28/61 (45%), Positives = 44/61 (72%)
Frame = +3
Query: 261 PADCCFSYTPRKIQCVNMKDYTLTTSECSKPAVIFLTKKGQRVCTNPDDEQVQKCMSELK 440
P DCCFS+ R+I + DY T+S+CSKP +IF TK+G++VC +P ++ VQ+ + +L+
Sbjct: 62 PTDCCFSFVSRQIPRKLVDDYYETSSQCSKPGIIFKTKRGRQVCADPSEDWVQEYIIDLE 121
Query: 441 L 443
L
Sbjct: 122 L 122
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 22,590,747
Number of extensions: 574192
Number of successful extensions: 1583
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 1575
Number of HSP's successfully gapped: 19
Length of query: 213
Length of database: 17,681,374
Length adjustment: 98
Effective length of query: 115
Effective length of database: 14,438,750
Effective search space: 1660456250
Effective search space used: 1660456250
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AMP01_0050_G01
(639 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537722.1| PREDICTED: similar to Small inducible cytokine ... 92 4e-19
Alignment gi|NP_001005250.1| C-C motif chemokine 4 precursor [Canis lupus... 68 8e-12
Alignment gi|XP_537720.1| PREDICTED: similar to Small inducible cytokine ... 67 1e-11
Alignment gi|XP_537723.2| PREDICTED: similar to chemokine (C-C motif) lig... 67 2e-11
Alignment gi|NP_001005251.1| C-C motif chemokine 3 precursor [Canis lupus... 62 4e-10
Alignment gi|NP_001003010.1| C-C motif chemokine 5 precursor [Canis lupus... 57 1e-08
Alignment gi|NP_001005253.1| C-C motif chemokine 26 precursor [Canis lupu... 53 3e-07
Alignment gi|NP_001003966.1| C-C motif chemokine 13 precursor [Canis lupu... 50 1e-06
Alignment gi|NP_001005255.1| C-C motif chemokine 8 precursor [Canis lupus... 50 1e-06
Alignment gi|NP_001003297.1| C-C motif chemokine 2 precursor [Canis lupus... 50 2e-06
>ref|XP_537722.1| PREDICTED: similar to Small inducible cytokine A23 precursor
(CCL23) (Macrophage inflammatory protein 3) (MIP-3)
(Myeloid progenitor inhibitory factor-1) (MPIF-1)
(CK-beta-8) (CKB-8) [Canis familiaris].
Length = 119
Score = 92.0 bits (227), Expect = 4e-19
Identities = 43/88 (48%), Positives = 57/88 (64%)
Frame = +3
Query: 183 IQSHGDLAMMKNVKQHSIQSHGGFHRPADCCFSYTPRKIQCVNMKDYTLTTSECSKPAVI 362
IQ + + K + IQ G HRPADCC + TPRKI+C NM+D+ T+S CS+P +I
Sbjct: 21 IQDLHESMVAKQQHEPLIQLEAGIHRPADCCPNLTPRKIRCENMQDFFKTSSGCSRPGII 80
Query: 363 FLTKKGQRVCTNPDDEQVQKCMSELKLT 446
F TKKG+ VC NP D +VQ CM L ++
Sbjct: 81 FRTKKGRLVCANPYDLEVQNCMRSLLMS 108
>ref|NP_001005250.1| C-C motif chemokine 4 precursor [Canis lupus familiaris].
Length = 92
Score = 67.8 bits (164), Expect = 8e-12
Identities = 32/65 (49%), Positives = 44/65 (67%)
Frame = +3
Query: 249 GFHRPADCCFSYTPRKIQCVNMKDYTLTTSECSKPAVIFLTKKGQRVCTNPDDEQVQKCM 428
G P CCFSYT RKI + DY T+S CS+PAV+F T++G++VC NP + VQ+ M
Sbjct: 27 GSDPPTACCFSYTLRKIPRNFVADYFETSSLCSQPAVVFQTRRGRQVCANPSEPWVQEYM 86
Query: 429 SELKL 443
+L+L
Sbjct: 87 DDLEL 91
>ref|XP_537720.1| PREDICTED: similar to Small inducible cytokine A3-like 1 precursor
(Tonsillar lymphocyte LD78 beta protein)
(LD78-beta(1-70)) (G0/G1 switch regulatory protein 19-2)
(G0S19-2 protein) (PAT 464.2) [Canis familiaris].
Length = 93
Score = 67.0 bits (162), Expect = 1e-11
Identities = 31/67 (46%), Positives = 43/67 (64%)
Frame = +3
Query: 249 GFHRPADCCFSYTPRKIQCVNMKDYTLTTSECSKPAVIFLTKKGQRVCTNPDDEQVQKCM 428
G P CCFSY R+I + DY T+S+CSKP VIF TK+GQ++C +P VQK +
Sbjct: 27 GADTPTSCCFSYISRQIPRKFVVDYYETSSQCSKPGVIFQTKRGQQICADPGKAWVQKYI 86
Query: 429 SELKLTS 449
+ L+L +
Sbjct: 87 TNLELNA 93
>ref|XP_537723.2| PREDICTED: similar to chemokine (C-C motif) ligand 14 isoform 1
precursor [Canis familiaris].
Length = 96
Score = 66.6 bits (161), Expect = 2e-11
Identities = 29/69 (42%), Positives = 43/69 (62%)
Frame = +3
Query: 234 IQSHGGFHRPADCCFSYTPRKIQCVNMKDYTLTTSECSKPAVIFLTKKGQRVCTNPDDEQ 413
+ S G +H PA+CCF Y R I + DY T+S+CS+ +IF+TK G +C NP D+
Sbjct: 26 LSSRGPYH-PAECCFRYITRAIPRHRITDYFETSSQCSRAGIIFITKNGHSICANPSDDW 84
Query: 414 VQKCMSELK 440
VQ + +L+
Sbjct: 85 VQDYIKDLR 93
>ref|NP_001005251.1| C-C motif chemokine 3 precursor [Canis lupus familiaris].
Length = 92
Score = 62.0 bits (149), Expect = 4e-10
Identities = 28/65 (43%), Positives = 42/65 (64%)
Frame = +3
Query: 249 GFHRPADCCFSYTPRKIQCVNMKDYTLTTSECSKPAVIFLTKKGQRVCTNPDDEQVQKCM 428
G P CCFSY ++I + D T+S+CSKP +IF T+KG++ C NP + VQ+ +
Sbjct: 26 GADTPIACCFSYVSKQIPRKFIVDCFETSSQCSKPGIIFETRKGRQACANPSEAWVQEYV 85
Query: 429 SELKL 443
++LKL
Sbjct: 86 ADLKL 90
>ref|NP_001003010.1| C-C motif chemokine 5 precursor [Canis lupus familiaris].
Length = 91
Score = 57.0 bits (136), Expect = 1e-08
Identities = 21/59 (35%), Positives = 43/59 (72%)
Frame = +3
Query: 270 CCFSYTPRKIQCVNMKDYTLTTSECSKPAVIFLTKKGQRVCTNPDDEQVQKCMSELKLT 446
CCF+Y ++ ++++Y T+S+CS PAV+F+T+K ++VC NP + V++ ++ L+++
Sbjct: 33 CCFAYISGRLPFTHVQEYFYTSSKCSMPAVVFVTRKHRQVCANPQKKWVREYINSLEMS 91
>ref|NP_001005253.1| C-C motif chemokine 26 precursor [Canis lupus familiaris].
Length = 94
Score = 52.8 bits (125), Expect = 3e-07
Identities = 23/57 (40%), Positives = 36/57 (63%)
Frame = +3
Query: 270 CCFSYTPRKIQCVNMKDYTLTTSECSKPAVIFLTKKGQRVCTNPDDEQVQKCMSELK 440
CCF Y+ + + ++ Y T S CS+ AVIF TKKG +VC P ++ VQ+ ++ L+
Sbjct: 33 CCFQYSHKILPWKWIQSYKFTRSSCSQQAVIFTTKKGHKVCAQPKEKWVQRYIALLR 89
>ref|NP_001003966.1| C-C motif chemokine 13 precursor [Canis lupus familiaris].
Length = 98
Score = 50.4 bits (119), Expect = 1e-06
Identities = 21/62 (33%), Positives = 36/62 (58%)
Frame = +3
Query: 270 CCFSYTPRKIQCVNMKDYTLTTSECSKPAVIFLTKKGQRVCTNPDDEQVQKCMSELKLTS 449
CCF++ +KI ++ Y +T+S C + AVIF TK + +C +P ++ VQ + L +
Sbjct: 34 CCFTFNNKKIPLQRLESYRITSSHCPRKAVIFSTKLAKAICADPKEKWVQDYVKHLDQRT 93
Query: 450 TT 455
T
Sbjct: 94 QT 95
>ref|NP_001005255.1| C-C motif chemokine 8 precursor [Canis lupus familiaris].
Length = 99
Score = 50.4 bits (119), Expect = 1e-06
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +3
Query: 261 PADCCFSYTPRKIQCVNMKDYT-LTTSECSKPAVIFLTKKGQRVCTNPDDEQVQKCMSEL 437
P CCFS RKI ++ Y +T S+C + AVIF TK + +C +P + VQ M+ L
Sbjct: 31 PITCCFSMVKRKIPMQKLESYMRITNSQCPQEAVIFKTKASREICADPKQKWVQDYMNHL 90
>ref|NP_001003297.1| C-C motif chemokine 2 precursor [Canis lupus familiaris].
Length = 101
Score = 50.1 bits (118), Expect = 2e-06
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Frame = +3
Query: 261 PADCCFSYTPRKIQCVNMKDYT-LTTSECSKPAVIFLTKKGQRVCTNPDDEQVQKCMSEL 437
P CC++ T +KI + Y +T+S+C K AVIF T + +C +P + VQ M+ L
Sbjct: 31 PVTCCYTLTNKKISIQRLASYKRVTSSKCPKEAVIFKTVLNKEICADPKQKWVQDSMAHL 90
Query: 438 KLTSTTKDLK 467
S T+ K
Sbjct: 91 DKKSQTQTAK 100
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 23,411,576
Number of extensions: 567800
Number of successful extensions: 1622
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 1617
Number of HSP's successfully gapped: 13
Length of query: 213
Length of database: 18,874,504
Length adjustment: 98
Effective length of query: 115
Effective length of database: 15,607,576
Effective search space: 1794871240
Effective search space used: 1794871240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AMP01_0050_G01
(639 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005055.2| C-C motif chemokine 23 isoform CKbeta8-1 precur... 92 4e-19
Alignment gi|NP_665905.1| C-C motif chemokine 23 isoform CKbeta8 precurso... 89 4e-18
Alignment gi|NP_116741.1| C-C motif chemokine 15 precursor [Homo sapiens]. 79 2e-15
Alignment gi|NP_001001437.2| C-C motif chemokine 3-like 1 precursor [Homo... 75 4e-14
Alignment gi|NP_066286.1| C-C motif chemokine 3-like 1 precursor [Homo sa... 75 4e-14
Alignment gi|NP_116738.1| C-C motif chemokine 14 isoform 2 precursor [Hom... 75 4e-14
Alignment gi|NP_116739.1| C-C motif chemokine 14 isoform 1 precursor [Hom... 74 8e-14
Alignment gi|NP_002974.1| C-C motif chemokine 3 precursor [Homo sapiens]. 73 2e-13
Alignment gi|NP_996890.1| chemokine (C-C motif) ligand 4-like 2 precursor... 65 6e-11
Alignment gi|NP_001001435.1| C-C motif chemokine 4-like precursor [Homo s... 65 6e-11
>ref|NP_005055.2| C-C motif chemokine 23 isoform CKbeta8-1 precursor [Homo sapiens].
Length = 137
Score = 92.0 bits (227), Expect = 4e-19
Identities = 45/83 (54%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Frame = +3
Query: 225 QHSIQSHGGFHRP-ADCCFSYTPRKIQCVNMKDYTLTTSECSKPAVIFLTKKGQRVCTNP 401
Q ++ GFH ADCC SYTPR I C ++ Y T SECSKP VIFLTKKG+R C NP
Sbjct: 55 QMTLSHAAGFHATSADCCISYTPRSIPCSLLESYFETNSECSKPGVIFLTKKGRRFCANP 114
Query: 402 DDEQVQKCMSELKLTSTTKDLKS 470
D+QVQ C+ LKL + K K+
Sbjct: 115 SDKQVQVCVRMLKLDTRIKTRKN 137
>ref|NP_665905.1| C-C motif chemokine 23 isoform CKbeta8 precursor [Homo sapiens].
Length = 120
Score = 88.6 bits (218), Expect = 4e-18
Identities = 41/69 (59%), Positives = 48/69 (69%)
Frame = +3
Query: 264 ADCCFSYTPRKIQCVNMKDYTLTTSECSKPAVIFLTKKGQRVCTNPDDEQVQKCMSELKL 443
ADCC SYTPR I C ++ Y T SECSKP VIFLTKKG+R C NP D+QVQ C+ LKL
Sbjct: 52 ADCCISYTPRSIPCSLLESYFETNSECSKPGVIFLTKKGRRFCANPSDKQVQVCVRMLKL 111
Query: 444 TSTTKDLKS 470
+ K K+
Sbjct: 112 DTRIKTRKN 120
>ref|NP_116741.1| C-C motif chemokine 15 precursor [Homo sapiens].
Length = 113
Score = 79.3 bits (194), Expect = 2e-15
Identities = 37/63 (58%), Positives = 42/63 (66%)
Frame = +3
Query: 252 FHRPADCCFSYTPRKIQCVNMKDYTLTTSECSKPAVIFLTKKGQRVCTNPDDEQVQKCMS 431
FH ADCC SY + I C MK Y T+SECSKP VIFLTKKG++VC P VQ CM
Sbjct: 47 FHFAADCCTSYISQSIPCSLMKSYFETSSECSKPGVIFLTKKGRQVCAKPSGPGVQDCMK 106
Query: 432 ELK 440
+LK
Sbjct: 107 KLK 109
>ref|NP_001001437.2| C-C motif chemokine 3-like 1 precursor [Homo sapiens].
Length = 93
Score = 75.5 bits (184), Expect = 4e-14
Identities = 34/63 (53%), Positives = 49/63 (77%)
Frame = +3
Query: 261 PADCCFSYTPRKIQCVNMKDYTLTTSECSKPAVIFLTKKGQRVCTNPDDEQVQKCMSELK 440
P CCFSYT R+I + DY T+S+CSKP+VIFLTK+G++VC +P +E VQK +S+L+
Sbjct: 31 PTACCFSYTSRQIPQNFIADYFETSSQCSKPSVIFLTKRGRQVCADPSEEWVQKYVSDLE 90
Query: 441 LTS 449
L++
Sbjct: 91 LSA 93
>ref|NP_066286.1| C-C motif chemokine 3-like 1 precursor [Homo sapiens].
Length = 93
Score = 75.5 bits (184), Expect = 4e-14
Identities = 34/63 (53%), Positives = 49/63 (77%)
Frame = +3
Query: 261 PADCCFSYTPRKIQCVNMKDYTLTTSECSKPAVIFLTKKGQRVCTNPDDEQVQKCMSELK 440
P CCFSYT R+I + DY T+S+CSKP+VIFLTK+G++VC +P +E VQK +S+L+
Sbjct: 31 PTACCFSYTSRQIPQNFIADYFETSSQCSKPSVIFLTKRGRQVCADPSEEWVQKYVSDLE 90
Query: 441 LTS 449
L++
Sbjct: 91 LSA 93
>ref|NP_116738.1| C-C motif chemokine 14 isoform 2 precursor [Homo sapiens].
Length = 109
Score = 75.5 bits (184), Expect = 4e-14
Identities = 31/65 (47%), Positives = 45/65 (69%)
Frame = +3
Query: 246 GGFHRPADCCFSYTPRKIQCVNMKDYTLTTSECSKPAVIFLTKKGQRVCTNPDDEQVQKC 425
GG + P++CCF+YT KI + DY T S+CSKP ++F+TK+G VCTNP D+ VQ
Sbjct: 43 GGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCSKPGIVFITKRGHSVCTNPSDKWVQDY 102
Query: 426 MSELK 440
+ ++K
Sbjct: 103 IKDMK 107
>ref|NP_116739.1| C-C motif chemokine 14 isoform 1 precursor [Homo sapiens].
Length = 93
Score = 74.3 bits (181), Expect = 8e-14
Identities = 32/67 (47%), Positives = 46/67 (68%)
Frame = +3
Query: 240 SHGGFHRPADCCFSYTPRKIQCVNMKDYTLTTSECSKPAVIFLTKKGQRVCTNPDDEQVQ 419
S G +H P++CCF+YT KI + DY T S+CSKP ++F+TK+G VCTNP D+ VQ
Sbjct: 26 SRGPYH-PSECCFTYTTYKIPRQRIMDYYETNSQCSKPGIVFITKRGHSVCTNPSDKWVQ 84
Query: 420 KCMSELK 440
+ ++K
Sbjct: 85 DYIKDMK 91
>ref|NP_002974.1| C-C motif chemokine 3 precursor [Homo sapiens].
Length = 92
Score = 72.8 bits (177), Expect = 2e-13
Identities = 33/63 (52%), Positives = 47/63 (74%)
Frame = +3
Query: 261 PADCCFSYTPRKIQCVNMKDYTLTTSECSKPAVIFLTKKGQRVCTNPDDEQVQKCMSELK 440
P CCFSYT R+I + DY T+S+CSKP VIFLTK+ ++VC +P +E VQK +S+L+
Sbjct: 30 PTACCFSYTSRQIPQNFIADYFETSSQCSKPGVIFLTKRSRQVCADPSEEWVQKYVSDLE 89
Query: 441 LTS 449
L++
Sbjct: 90 LSA 92
>ref|NP_996890.1| chemokine (C-C motif) ligand 4-like 2 precursor [Homo sapiens].
Length = 92
Score = 64.7 bits (156), Expect = 6e-11
Identities = 30/65 (46%), Positives = 44/65 (67%)
Frame = +3
Query: 249 GFHRPADCCFSYTPRKIQCVNMKDYTLTTSECSKPAVIFLTKKGQRVCTNPDDEQVQKCM 428
G P CCFSYT RK+ + DY T+S CS+PAV+F TK+G++VC +P + VQ+ +
Sbjct: 27 GSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQPAVVFQTKRGKQVCADPSESWVQEYV 86
Query: 429 SELKL 443
+L+L
Sbjct: 87 YDLEL 91
>ref|NP_001001435.1| C-C motif chemokine 4-like precursor [Homo sapiens].
Length = 92
Score = 64.7 bits (156), Expect = 6e-11
Identities = 30/65 (46%), Positives = 44/65 (67%)
Frame = +3
Query: 249 GFHRPADCCFSYTPRKIQCVNMKDYTLTTSECSKPAVIFLTKKGQRVCTNPDDEQVQKCM 428
G P CCFSYT RK+ + DY T+S CS+PAV+F TK+G++VC +P + VQ+ +
Sbjct: 27 GSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQPAVVFQTKRGKQVCADPSESWVQEYV 86
Query: 429 SELKL 443
+L+L
Sbjct: 87 YDLEL 91
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 23,064,548
Number of extensions: 559690
Number of successful extensions: 1643
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 1637
Number of HSP's successfully gapped: 18
Length of query: 213
Length of database: 18,297,164
Length adjustment: 98
Effective length of query: 115
Effective length of database: 15,066,692
Effective search space: 1732669580
Effective search space used: 1732669580
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AMP01_0050_G01
(639 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_038680.1| C-C motif chemokine 4 [Mus musculus]. 72 4e-13
Alignment gi|NP_035468.1| C-C motif chemokine 9 precursor [Mus musculus]. 70 1e-12
Alignment gi|NP_033165.1| C-C motif chemokine 6 precursor [Mus musculus]. 63 2e-10
Alignment gi|NP_035467.1| C-C motif chemokine 3 [Mus musculus]. 57 1e-08
Alignment gi|NP_038681.2| C-C motif chemokine 5 precursor [Mus musculus]. 55 6e-08
Alignment gi|NP_035463.1| C-C motif chemokine 2 [Mus musculus]. 51 8e-07
Alignment gi|NP_062523.1| C-C motif chemokine 24 precursor [Mus musculus]. 49 4e-06
Alignment gi|NP_036018.1| C-C motif chemokine 19 precursor [Mus musculus]. 48 7e-06
Alignment gi|XP_001473709.1| PREDICTED: c-C motif chemokine 19-like [Mus ... 48 7e-06
Alignment gi|XP_001474036.1| PREDICTED: c-C motif chemokine 19-like [Mus ... 48 7e-06
>ref|NP_038680.1| C-C motif chemokine 4 [Mus musculus].
Length = 92
Score = 71.6 bits (174), Expect = 4e-13
Identities = 32/65 (49%), Positives = 45/65 (69%)
Frame = +3
Query: 249 GFHRPADCCFSYTPRKIQCVNMKDYTLTTSECSKPAVIFLTKKGQRVCTNPDDEQVQKCM 428
G P CCFSYT R++ + DY T+S CSKPAV+FLTK+G+++C NP + V + M
Sbjct: 27 GSDPPTSCCFSYTSRQLHRSFVMDYYETSSLCSKPAVVFLTKRGRQICANPSEPWVTEYM 86
Query: 429 SELKL 443
S+L+L
Sbjct: 87 SDLEL 91
>ref|NP_035468.1| C-C motif chemokine 9 precursor [Mus musculus].
Length = 122
Score = 70.1 bits (170), Expect = 1e-12
Identities = 31/75 (41%), Positives = 45/75 (60%)
Frame = +3
Query: 243 HGGFHRPADCCFSYTPRKIQCVNMKDYTLTTSECSKPAVIFLTKKGQRVCTNPDDEQVQK 422
H GF +DCC SY R IQC Y T+ C++P +IF++K+G +VC NP D +VQ+
Sbjct: 48 HMGFQDSSDCCLSYNSR-IQCSRFIGYFPTSGGCTRPGIIFISKRGFQVCANPSDRRVQR 106
Query: 423 CMSELKLTSTTKDLK 467
C+ L+ S + K
Sbjct: 107 CIERLEQNSQPRTYK 121
>ref|NP_033165.1| C-C motif chemokine 6 precursor [Mus musculus].
Length = 116
Score = 62.8 bits (151), Expect = 2e-10
Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Frame = +3
Query: 243 HGGFH-RPADCCFSYTPRKIQCVNMKDYTLTTSECSKPAVIFLTKKGQRVCTNPDDEQVQ 419
H GF +DCCFSY + I C Y T+ C KP +IF++++G +VC +P D +VQ
Sbjct: 40 HQGFQDTSSDCCFSYATQ-IPCKRFIYYFPTSGGCIKPGIIFISRRGTQVCADPSDRRVQ 98
Query: 420 KCMSELK 440
+C+S LK
Sbjct: 99 RCLSTLK 105
>ref|NP_035467.1| C-C motif chemokine 3 [Mus musculus].
Length = 92
Score = 56.6 bits (135), Expect = 1e-08
Identities = 28/67 (41%), Positives = 44/67 (65%)
Frame = +3
Query: 249 GFHRPADCCFSYTPRKIQCVNMKDYTLTTSECSKPAVIFLTKKGQRVCTNPDDEQVQKCM 428
G P CCFSY+ RKI + DY T+S CS+P VIFLTK+ +++C + + VQ+ +
Sbjct: 27 GADTPTACCFSYS-RKIPRQFIVDYFETSSLCSQPGVIFLTKRNRQICADSKETWVQEYI 85
Query: 429 SELKLTS 449
++L+L +
Sbjct: 86 TDLELNA 92
>ref|NP_038681.2| C-C motif chemokine 5 precursor [Mus musculus].
Length = 91
Score = 54.7 bits (130), Expect = 6e-08
Identities = 21/59 (35%), Positives = 42/59 (71%)
Frame = +3
Query: 270 CCFSYTPRKIQCVNMKDYTLTTSECSKPAVIFLTKKGQRVCTNPDDEQVQKCMSELKLT 446
CCF+Y + ++K+Y T+S+CS AV+F+T++ ++VC NP+ + VQ+ ++ L+++
Sbjct: 33 CCFAYLSLALPRAHVKEYFYTSSKCSNLAVVFVTRRNRQVCANPEKKWVQEYINYLEMS 91
>ref|NP_035463.1| C-C motif chemokine 2 [Mus musculus].
Length = 148
Score = 50.8 bits (120), Expect = 8e-07
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +3
Query: 228 HSIQSHGGFHRPADCCFSYTPRKIQCVNMKDYT-LTTSECSKPAVIFLTKKGQRVCTNPD 404
H + + P CC+S+T + I ++ Y +T+S C K AV+F+TK + VC +P
Sbjct: 20 HVLAQPDAVNAPLTCCYSFTSKMIPMSRLESYKRITSSRCPKEAVVFVTKLKREVCADPK 79
Query: 405 DEQVQKCMSEL 437
E VQ + L
Sbjct: 80 KEWVQTYIKNL 90
>ref|NP_062523.1| C-C motif chemokine 24 precursor [Mus musculus].
Length = 119
Score = 48.5 bits (114), Expect = 4e-06
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Frame = +3
Query: 261 PADCCFSYTPRKIQCVNMKDYTLTT-SECSKPAVIFLTKKGQRVCTNPDDEQVQKCMSEL 437
P+ CC S+ +KI + Y L S C K VIF+TKKG ++CT+P VQ+ + +L
Sbjct: 30 PSSCCTSFISKKIPENRVVSYQLANGSICPKAGVIFITKKGHKICTDPKLLWVQRHIQKL 89
Query: 438 --KLTSTTKDLKSILLK 482
K +K K++ K
Sbjct: 90 DAKKNQPSKGAKAVRTK 106
>ref|NP_036018.1| C-C motif chemokine 19 precursor [Mus musculus].
Length = 108
Score = 47.8 bits (112), Expect = 7e-06
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = +3
Query: 246 GGFHRPADCCFSYTPRKI--QCVNMKDYTLTTSECSKPAVIFLTKKGQRVCTNPDDEQVQ 419
GG + DCC S T R I V Y L C PAV+F T +G ++C PD V
Sbjct: 25 GGANDAEDCCLSVTQRPIPGNIVKAFRYLLNEDGCRVPAVVFTTLRGYQLCAPPDQPWVD 84
Query: 420 KCMSELKLTS 449
+ + LK +S
Sbjct: 85 RIIRRLKKSS 94
>ref|XP_001473709.1| PREDICTED: c-C motif chemokine 19-like [Mus musculus].
Length = 164
Score = 47.8 bits (112), Expect = 7e-06
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = +3
Query: 246 GGFHRPADCCFSYTPRKI--QCVNMKDYTLTTSECSKPAVIFLTKKGQRVCTNPDDEQVQ 419
GG + DCC S T R I V Y L C PAV+F T +G ++C PD V
Sbjct: 81 GGANDAEDCCLSVTQRPIPGNIVKAFRYLLNEDGCRVPAVVFTTLRGYQLCAPPDQPWVD 140
Query: 420 KCMSELKLTS 449
+ + LK +S
Sbjct: 141 RIIRRLKKSS 150
>ref|XP_001474036.1| PREDICTED: c-C motif chemokine 19-like [Mus musculus].
Length = 164
Score = 47.8 bits (112), Expect = 7e-06
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = +3
Query: 246 GGFHRPADCCFSYTPRKI--QCVNMKDYTLTTSECSKPAVIFLTKKGQRVCTNPDDEQVQ 419
GG + DCC S T R I V Y L C PAV+F T +G ++C PD V
Sbjct: 81 GGANDAEDCCLSVTQRPIPGNIVKAFRYLLNEDGCRVPAVVFTTLRGYQLCAPPDQPWVD 140
Query: 420 KCMSELKLTS 449
+ + LK +S
Sbjct: 141 RIIRRLKKSS 150
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 19,704,840
Number of extensions: 477548
Number of successful extensions: 1540
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 1524
Number of HSP's successfully gapped: 16
Length of query: 213
Length of database: 15,617,559
Length adjustment: 97
Effective length of query: 116
Effective length of database: 12,704,067
Effective search space: 1473671772
Effective search space used: 1473671772
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AMP01_0050_G01
(639 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003358198.1| PREDICTED: c-C motif chemokine 23-like [Sus ... 225 1e-59
Alignment gi|XP_003131760.1| PREDICTED: c-C motif chemokine 23-like [Sus ... 225 1e-59
Alignment gi|NP_001009579.1| C-C motif chemokine 3-like 1 [Sus scrofa]. 74 6e-14
Alignment gi|NP_998944.1| C-C motif chemokine 4 precursor [Sus scrofa]. 72 2e-13
Alignment gi|XP_003131759.2| PREDICTED: c-C motif chemokine 3-like [Sus s... 71 5e-13
Alignment gi|XP_003131761.2| PREDICTED: c-C motif chemokine 14-like [Sus ... 61 4e-10
Alignment gi|NP_001123418.1| C-C motif chemokine 5 [Sus scrofa]. 59 2e-09
Alignment gi|NP_001072133.1| chemokine ligand 26-like protein [Sus scrofa]. 54 9e-08
Alignment gi|XP_003131762.2| PREDICTED: LOW QUALITY PROTEIN: c-C motif ch... 52 3e-07
Alignment gi|NP_999379.1| C-C motif chemokine 2 precursor [Sus scrofa]. 49 2e-06
>ref|XP_003358198.1| PREDICTED: c-C motif chemokine 23-like [Sus scrofa].
Length = 129
Score = 225 bits (574), Expect = 1e-59
Identities = 108/114 (94%), Positives = 109/114 (95%)
Frame = +3
Query: 186 QSHGDLAMMKNVKQHSIQSHGGFHRPADCCFSYTPRKIQCVNMKDYTLTTSECSKPAVIF 365
Q+ DLAMMKNVKQHSI SHGGFHRPADCCFSYTPRKIQCVNMKDYTLTTSECSKPAVIF
Sbjct: 16 QAAMDLAMMKNVKQHSILSHGGFHRPADCCFSYTPRKIQCVNMKDYTLTTSECSKPAVIF 75
Query: 366 LTKKGQRVCTNPDDEQVQKCMSELKLTSTTKDLKSILLKKEHFWRRPPLGEALA 527
LTKKGQRVCTNPDDEQVQKCMSELKLTST KDLKSILLKKEHFW RPPLGEALA
Sbjct: 76 LTKKGQRVCTNPDDEQVQKCMSELKLTSTIKDLKSILLKKEHFWPRPPLGEALA 129
>ref|XP_003131760.1| PREDICTED: c-C motif chemokine 23-like [Sus scrofa].
Length = 129
Score = 225 bits (574), Expect = 1e-59
Identities = 108/114 (94%), Positives = 109/114 (95%)
Frame = +3
Query: 186 QSHGDLAMMKNVKQHSIQSHGGFHRPADCCFSYTPRKIQCVNMKDYTLTTSECSKPAVIF 365
Q+ DLAMMKNVKQHSI SHGGFHRPADCCFSYTPRKIQCVNMKDYTLTTSECSKPAVIF
Sbjct: 16 QAAMDLAMMKNVKQHSILSHGGFHRPADCCFSYTPRKIQCVNMKDYTLTTSECSKPAVIF 75
Query: 366 LTKKGQRVCTNPDDEQVQKCMSELKLTSTTKDLKSILLKKEHFWRRPPLGEALA 527
LTKKGQRVCTNPDDEQVQKCMSELKLTST KDLKSILLKKEHFW RPPLGEALA
Sbjct: 76 LTKKGQRVCTNPDDEQVQKCMSELKLTSTIKDLKSILLKKEHFWPRPPLGEALA 129
>ref|NP_001009579.1| C-C motif chemokine 3-like 1 [Sus scrofa].
Length = 93
Score = 73.9 bits (180), Expect = 6e-14
Identities = 34/67 (50%), Positives = 46/67 (68%)
Frame = +3
Query: 249 GFHRPADCCFSYTPRKIQCVNMKDYTLTTSECSKPAVIFLTKKGQRVCTNPDDEQVQKCM 428
G P CCFSYT R++ + DY T+S+CSKP VIF TKKG+ VC NP+D VQ+ +
Sbjct: 27 GADTPTACCFSYTSRQLPRKFVADYFETSSQCSKPGVIFQTKKGREVCANPEDAWVQEYI 86
Query: 429 SELKLTS 449
S+L+L +
Sbjct: 87 SDLELNA 93
>ref|NP_998944.1| C-C motif chemokine 4 precursor [Sus scrofa].
Length = 92
Score = 72.0 bits (175), Expect = 2e-13
Identities = 33/65 (50%), Positives = 45/65 (69%)
Frame = +3
Query: 249 GFHRPADCCFSYTPRKIQCVNMKDYTLTTSECSKPAVIFLTKKGQRVCTNPDDEQVQKCM 428
G P CCF+YT RK+ + DY T+S CS+PAV+F TKKG++VC NP D+ VQ+ M
Sbjct: 27 GSDPPTSCCFTYTVRKLPRNFVTDYYETSSLCSQPAVVFQTKKGRQVCANPSDDWVQEYM 86
Query: 429 SELKL 443
+L+L
Sbjct: 87 DDLEL 91
>ref|XP_003131759.2| PREDICTED: c-C motif chemokine 3-like [Sus scrofa].
Length = 85
Score = 70.9 bits (172), Expect = 5e-13
Identities = 30/63 (47%), Positives = 46/63 (73%)
Frame = +3
Query: 261 PADCCFSYTPRKIQCVNMKDYTLTTSECSKPAVIFLTKKGQRVCTNPDDEQVQKCMSELK 440
P DCC +YT R+I ++DY T+S CSKP +IF TKKG+++C NP++ VQ+ + +LK
Sbjct: 23 PPDCCLAYTTRRIPRKLVQDYYKTSSYCSKPGIIFQTKKGRQICANPEEAWVQEYIIDLK 82
Query: 441 LTS 449
L++
Sbjct: 83 LSA 85
>ref|XP_003131761.2| PREDICTED: c-C motif chemokine 14-like [Sus scrofa].
Length = 99
Score = 61.2 bits (147), Expect = 4e-10
Identities = 27/62 (43%), Positives = 39/62 (62%)
Frame = +3
Query: 255 HRPADCCFSYTPRKIQCVNMKDYTLTTSECSKPAVIFLTKKGQRVCTNPDDEQVQKCMSE 434
++P DCCF++ R I + Y T+S+C KP +IF+T G+ VC NP D+ VQ + E
Sbjct: 36 YQPTDCCFTHLTRAIPRERISSYYETSSQCPKPGIIFITIIGRFVCANPRDDWVQDYIKE 95
Query: 435 LK 440
LK
Sbjct: 96 LK 97
>ref|NP_001123418.1| C-C motif chemokine 5 [Sus scrofa].
Length = 91
Score = 59.3 bits (142), Expect = 2e-09
Identities = 23/59 (38%), Positives = 43/59 (72%)
Frame = +3
Query: 270 CCFSYTPRKIQCVNMKDYTLTTSECSKPAVIFLTKKGQRVCTNPDDEQVQKCMSELKLT 446
CCFSY R + ++++Y T+S+CS AV+F+T+K ++VC NP+ + V++ ++ L+L+
Sbjct: 33 CCFSYLSRPLPRAHLQEYFYTSSKCSMAAVVFITRKNRQVCANPEKKWVREYINSLELS 91
>ref|NP_001072133.1| chemokine ligand 26-like protein [Sus scrofa].
Length = 94
Score = 53.5 bits (127), Expect = 9e-08
Identities = 25/57 (43%), Positives = 34/57 (59%)
Frame = +3
Query: 270 CCFSYTPRKIQCVNMKDYTLTTSECSKPAVIFLTKKGQRVCTNPDDEQVQKCMSELK 440
CCF Y+ + + + Y T + CS+ AVIF TKKG +VC P + VQK +S LK
Sbjct: 33 CCFQYSHKILPWRWVNTYEFTRNSCSQQAVIFTTKKGHKVCAKPQETWVQKYISLLK 89
>ref|XP_003131762.2| PREDICTED: LOW QUALITY PROTEIN: c-C motif chemokine 16-like [Sus
scrofa].
Length = 148
Score = 52.0 bits (123), Expect = 3e-07
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Frame = +3
Query: 261 PADCCFSY----TPRKIQCVNMKDYTLTTSECSKPAVIFLTKKGQRVCTNPDDEQVQKCM 428
P CC +Y PRK+ K + C PA+IF+TK+ + +CTNPDD+ VQK +
Sbjct: 34 PPTCCLTYHEKVLPRKLVVGYKKAFN-----CHLPAIIFITKRNREICTNPDDKWVQKYI 88
Query: 429 SELKLT 446
+ KL+
Sbjct: 89 KDPKLS 94
>ref|NP_999379.1| C-C motif chemokine 2 precursor [Sus scrofa].
Length = 99
Score = 49.3 bits (116), Expect = 2e-06
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +3
Query: 261 PADCCFSYTPRKIQCVNMKDYT-LTTSECSKPAVIFLTKKGQRVCTNPDDEQVQKCMSEL 437
P CC++ T +KI + Y +T+S+C K AVIF T G+ +C P + VQ +S L
Sbjct: 31 PVTCCYTLTSKKISMQRLMSYRRVTSSKCPKEAVIFKTIAGKEICAEPKQKWVQDSISHL 90
Query: 438 KLTSTT 455
+ T
Sbjct: 91 DKKNQT 96
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 14,735,899
Number of extensions: 398173
Number of successful extensions: 1055
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 1051
Number of HSP's successfully gapped: 11
Length of query: 213
Length of database: 11,343,932
Length adjustment: 95
Effective length of query: 118
Effective length of database: 8,978,717
Effective search space: 1059488606
Effective search space used: 1059488606
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AMP01_0050_G01
(639 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 448 e-123
>Sscrofa_Chr12
|| Length = 63588571
Score = 448 bits (226), Expect = e-123
Identities = 241/246 (97%)
Strand = Plus / Plus
Query: 362 cttcctcaccaagaaggggcagcgtgtctgtaccaaccctgatgacgaacaagttcagaa 421
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 41164677 cttcctcaccaagaaggggcagcgtgtctgcaccaaccctgatgacgagcaagttcagaa 41164736
Query: 422 atgcatgtcagagctgaagctgacctccaccaccaaggacctgaaaagcatactgcttaa 481
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 41164737 atgcatgtcagagctgaagctgacctccaccatcaaggacctgaaaagcatactgcttaa 41164796
Query: 482 gaaggaacacttttggcgccggccacctcttggggaagccttggcctgaattatttttta 541
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41164797 gaaggaacacttttggccccggccacctcttggggaagccttggcctgaattatttttta 41164856
Query: 542 aaaagcaacaattactgttctgttctggttacaaaagcaaagcagaaataaagagtattc 601
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41164857 aaaagcagcaattactgttctgttctggttacaaaagcaaagcagaaataaagagtattc 41164916
Query: 602 cactgc 607
||||||
Sbjct: 41164917 cactgc 41164922
Score = 291 bits (147), Expect = 2e-76
Identities = 147/147 (100%)
Strand = Plus / Plus
Query: 1 cttcttataaatacaaaggcagagctgggatcttggggcatcagagagcccaggagtgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41161011 cttcttataaatacaaaggcagagctgggatcttggggcatcagagagcccaggagtgct 41161070
Query: 61 caggctggcacagtctgcccaccgagaagatgaagacctcgattgctgccctctccgtcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41161071 caggctggcacagtctgcccaccgagaagatgaagacctcgattgctgccctctccgtcc 41161130
Query: 121 tcatccttgccgcccaggctgcgatgg 147
|||||||||||||||||||||||||||
Sbjct: 41161131 tcatccttgccgcccaggctgcgatgg 41161157
Score = 226 bits (114), Expect = 1e-56
Identities = 114/114 (100%)
Strand = Plus / Plus
Query: 248 aggctttcaccgtcctgctgactgctgcttctcttacaccccacgaaaaatccaatgtgt 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41164208 aggctttcaccgtcctgctgactgctgcttctcttacaccccacgaaaaatccaatgtgt 41164267
Query: 308 aaacatgaaagattatacactaacgaccagtgagtgctccaagcctgctgtcat 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41164268 aaacatgaaagattatacactaacgaccagtgagtgctccaagcctgctgtcat 41164321
Score = 99.6 bits (50), Expect = 2e-18
Identities = 53/54 (98%)
Strand = Plus / Plus
Query: 197 agatctggccatgatgaagaacgtgaagcaacattcaatacagtctcatggagg 250
||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 41163376 agatctggccatgatgaagaacgtgaagcaacattcaatactgtctcatggagg 41163429
Score = 95.6 bits (48), Expect = 3e-17
Identities = 51/52 (98%)
Strand = Plus / Plus
Query: 147 gatctggccatgatgaagaacgtgaagcaacattcaatacagtctcatggag 198
|||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 41163377 gatctggccatgatgaagaacgtgaagcaacattcaatactgtctcatggag 41163428
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 21,085,716
Number of extensions: 939
Number of successful extensions: 939
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 939
Number of HSP's successfully gapped: 5
Length of query: 639
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 618
Effective length of database: 2,808,413,156
Effective search space: 1735599330408
Effective search space used: 1735599330408
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)