Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AMP01_0076_B01
(655 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776962.1| high affinity immunoglobulin epsilon receptor s... 124 9e-29
Alignment gi|NP_776437.1| T-cell surface glycoprotein CD3 zeta chain [Bos... 49 3e-06
>ref|NP_776962.1| high affinity immunoglobulin epsilon receptor subunit gamma
precursor [Bos taurus].
Length = 85
Score = 124 bits (310), Expect = 9e-29
Identities = 62/67 (92%), Positives = 63/67 (94%)
Frame = +1
Query: 127 GEPQLCYILDAILFLYGIVLTLLYCRLKLQVRKAAIDSYEKSDGVYTGLSTRNQETYETL 306
GEPQLCYILDAILFLYGIVLTLLYCRLKLQVRKAA S EKSDG+YTGLSTR QETYETL
Sbjct: 20 GEPQLCYILDAILFLYGIVLTLLYCRLKLQVRKAATAS-EKSDGIYTGLSTRTQETYETL 78
Query: 307 KHEKPPQ 327
KHEKPPQ
Sbjct: 79 KHEKPPQ 85
>ref|NP_776437.1| T-cell surface glycoprotein CD3 zeta chain [Bos taurus].
Length = 166
Score = 49.3 bits (116), Expect = 3e-06
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Frame = +1
Query: 130 EPQLCYILDAILFLYGIVLTLLYCRLKLQVRKAAIDSYEKSDG-VYTGLSTRNQETYETL 306
+P+LCY+LD ILF+YG+++T L+ R K R A +Y++ VY L+ +E Y L
Sbjct: 28 DPKLCYLLDGILFIYGVIVTALFLRAKFS-RSANAPAYQQGQNPVYNELNVGRREEYAVL 86
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 24,217,405
Number of extensions: 683128
Number of successful extensions: 1751
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1750
Number of HSP's successfully gapped: 2
Length of query: 218
Length of database: 17,681,374
Length adjustment: 98
Effective length of query: 120
Effective length of database: 14,438,750
Effective search space: 1732650000
Effective search space used: 1732650000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AMP01_0076_B01
(655 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003171.1| high affinity immunoglobulin epsilon recepto... 132 2e-31
>ref|NP_001003171.1| high affinity immunoglobulin epsilon receptor subunit gamma [Canis
lupus familiaris].
Length = 86
Score = 132 bits (333), Expect = 2e-31
Identities = 62/67 (92%), Positives = 65/67 (97%)
Frame = +1
Query: 127 GEPQLCYILDAILFLYGIVLTLLYCRLKLQVRKAAIDSYEKSDGVYTGLSTRNQETYETL 306
GEPQLCYILDAILFLYGIVLTLLYCRLK+QVRKAA+ SYEK DG+YTGLSTRNQETYETL
Sbjct: 20 GEPQLCYILDAILFLYGIVLTLLYCRLKIQVRKAAVTSYEKPDGIYTGLSTRNQETYETL 79
Query: 307 KHEKPPQ 327
KHEKPPQ
Sbjct: 80 KHEKPPQ 86
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 25,031,541
Number of extensions: 674236
Number of successful extensions: 1762
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1761
Number of HSP's successfully gapped: 1
Length of query: 218
Length of database: 18,874,504
Length adjustment: 99
Effective length of query: 119
Effective length of database: 15,574,240
Effective search space: 1853334560
Effective search space used: 1853334560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AMP01_0076_B01
(655 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004097.1| high affinity immunoglobulin epsilon receptor s... 135 3e-32
Alignment gi|NP_000725.1| T-cell surface glycoprotein CD3 zeta chain isof... 51 1e-06
Alignment gi|NP_932170.1| T-cell surface glycoprotein CD3 zeta chain isof... 51 1e-06
>ref|NP_004097.1| high affinity immunoglobulin epsilon receptor subunit gamma
precursor [Homo sapiens].
Length = 86
Score = 135 bits (340), Expect = 3e-32
Identities = 65/67 (97%), Positives = 66/67 (98%)
Frame = +1
Query: 127 GEPQLCYILDAILFLYGIVLTLLYCRLKLQVRKAAIDSYEKSDGVYTGLSTRNQETYETL 306
GEPQLCYILDAILFLYGIVLTLLYCRLK+QVRKAAI SYEKSDGVYTGLSTRNQETYETL
Sbjct: 20 GEPQLCYILDAILFLYGIVLTLLYCRLKIQVRKAAITSYEKSDGVYTGLSTRNQETYETL 79
Query: 307 KHEKPPQ 327
KHEKPPQ
Sbjct: 80 KHEKPPQ 86
>ref|NP_000725.1| T-cell surface glycoprotein CD3 zeta chain isoform 2 precursor
[Homo sapiens].
Length = 163
Score = 50.8 bits (120), Expect = 1e-06
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Frame = +1
Query: 130 EPQLCYILDAILFLYGIVLTLLYCRLKLQVRKAAIDSYEKSDG-VYTGLSTRNQETYETL 306
+P+LCY+LD ILF+YG++LT L+ R+K R A +Y++ +Y L+ +E Y+ L
Sbjct: 28 DPKLCYLLDGILFIYGVILTALFLRVKFS-RSADAPAYQQGQNQLYNELNLGRREEYDVL 86
>ref|NP_932170.1| T-cell surface glycoprotein CD3 zeta chain isoform 1 precursor
[Homo sapiens].
Length = 164
Score = 50.8 bits (120), Expect = 1e-06
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Frame = +1
Query: 130 EPQLCYILDAILFLYGIVLTLLYCRLKLQVRKAAIDSYEKSDG-VYTGLSTRNQETYETL 306
+P+LCY+LD ILF+YG++LT L+ R+K R A +Y++ +Y L+ +E Y+ L
Sbjct: 28 DPKLCYLLDGILFIYGVILTALFLRVKFS-RSADAPAYQQGQNQLYNELNLGRREEYDVL 86
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 24,574,626
Number of extensions: 659542
Number of successful extensions: 1638
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1638
Number of HSP's successfully gapped: 3
Length of query: 218
Length of database: 18,297,164
Length adjustment: 98
Effective length of query: 120
Effective length of database: 15,066,692
Effective search space: 1808003040
Effective search space used: 1808003040
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AMP01_0076_B01
(655 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034315.1| high affinity immunoglobulin epsilon receptor s... 124 5e-29
Alignment gi|NP_001106865.1| CD247 antigen isoform eta precursor [Mus mus... 51 7e-07
Alignment gi|NP_001106864.2| CD247 antigen isoform theta precursor [Mus m... 51 7e-07
Alignment gi|NP_001106863.1| CD247 antigen isoform iota precursor [Mus mu... 51 7e-07
Alignment gi|NP_001106862.1| CD247 antigen isoform zeta precursor [Mus mu... 51 7e-07
Alignment gi|NP_112439.1| CD247 antigen isoform eta precursor [Mus muscul... 51 7e-07
>ref|NP_034315.1| high affinity immunoglobulin epsilon receptor subunit gamma
precursor [Mus musculus].
Length = 86
Score = 124 bits (312), Expect = 5e-29
Identities = 59/67 (88%), Positives = 64/67 (95%)
Frame = +1
Query: 127 GEPQLCYILDAILFLYGIVLTLLYCRLKLQVRKAAIDSYEKSDGVYTGLSTRNQETYETL 306
GEPQLCYILDA+LFLYGIVLTLLYCRLK+QVRKAAI S EK+D VYTGL+TR+QETYETL
Sbjct: 20 GEPQLCYILDAVLFLYGIVLTLLYCRLKIQVRKAAIASREKADAVYTGLNTRSQETYETL 79
Query: 307 KHEKPPQ 327
KHEKPPQ
Sbjct: 80 KHEKPPQ 86
>ref|NP_001106865.1| CD247 antigen isoform eta precursor [Mus musculus].
Length = 206
Score = 51.2 bits (121), Expect = 7e-07
Identities = 21/63 (33%), Positives = 38/63 (60%)
Frame = +1
Query: 130 EPQLCYILDAILFLYGIVLTLLYCRLKLQVRKAAIDSYEKSDGVYTGLSTRNQETYETLK 309
+P+LCY+LD ILF+YG+++T LY R K + + + +Y L+ +E Y+ L+
Sbjct: 28 DPKLCYLLDGILFIYGVIITALYLRAKFSRSAETAANLQDPNQLYNELNLGRREEYDVLE 87
Query: 310 HEK 318
++
Sbjct: 88 KKR 90
>ref|NP_001106864.2| CD247 antigen isoform theta precursor [Mus musculus].
Length = 188
Score = 51.2 bits (121), Expect = 7e-07
Identities = 21/63 (33%), Positives = 38/63 (60%)
Frame = +1
Query: 130 EPQLCYILDAILFLYGIVLTLLYCRLKLQVRKAAIDSYEKSDGVYTGLSTRNQETYETLK 309
+P+LCY+LD ILF+YG+++T LY R K + + + +Y L+ +E Y+ L+
Sbjct: 28 DPKLCYLLDGILFIYGVIITALYLRAKFSRSAETAANLQDPNQLYNELNLGRREEYDVLE 87
Query: 310 HEK 318
++
Sbjct: 88 KKR 90
>ref|NP_001106863.1| CD247 antigen isoform iota precursor [Mus musculus].
Length = 177
Score = 51.2 bits (121), Expect = 7e-07
Identities = 21/63 (33%), Positives = 38/63 (60%)
Frame = +1
Query: 130 EPQLCYILDAILFLYGIVLTLLYCRLKLQVRKAAIDSYEKSDGVYTGLSTRNQETYETLK 309
+P+LCY+LD ILF+YG+++T LY R K + + + +Y L+ +E Y+ L+
Sbjct: 28 DPKLCYLLDGILFIYGVIITALYLRAKFSRSAETAANLQDPNQLYNELNLGRREEYDVLE 87
Query: 310 HEK 318
++
Sbjct: 88 KKR 90
>ref|NP_001106862.1| CD247 antigen isoform zeta precursor [Mus musculus].
Length = 164
Score = 51.2 bits (121), Expect = 7e-07
Identities = 21/63 (33%), Positives = 38/63 (60%)
Frame = +1
Query: 130 EPQLCYILDAILFLYGIVLTLLYCRLKLQVRKAAIDSYEKSDGVYTGLSTRNQETYETLK 309
+P+LCY+LD ILF+YG+++T LY R K + + + +Y L+ +E Y+ L+
Sbjct: 28 DPKLCYLLDGILFIYGVIITALYLRAKFSRSAETAANLQDPNQLYNELNLGRREEYDVLE 87
Query: 310 HEK 318
++
Sbjct: 88 KKR 90
>ref|NP_112439.1| CD247 antigen isoform eta precursor [Mus musculus].
Length = 206
Score = 51.2 bits (121), Expect = 7e-07
Identities = 21/63 (33%), Positives = 38/63 (60%)
Frame = +1
Query: 130 EPQLCYILDAILFLYGIVLTLLYCRLKLQVRKAAIDSYEKSDGVYTGLSTRNQETYETLK 309
+P+LCY+LD ILF+YG+++T LY R K + + + +Y L+ +E Y+ L+
Sbjct: 28 DPKLCYLLDGILFIYGVIITALYLRAKFSRSAETAANLQDPNQLYNELNLGRREEYDVLE 87
Query: 310 HEK 318
++
Sbjct: 88 KKR 90
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 20,841,795
Number of extensions: 553153
Number of successful extensions: 1330
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1330
Number of HSP's successfully gapped: 6
Length of query: 218
Length of database: 15,617,559
Length adjustment: 97
Effective length of query: 121
Effective length of database: 12,704,067
Effective search space: 1537192107
Effective search space used: 1537192107
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AMP01_0076_B01
(655 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003355138.1| PREDICTED: high affinity immunoglobulin epsi... 139 2e-33
Alignment gi|NP_001001265.1| high affinity immunoglobulin epsilon recepto... 139 2e-33
Alignment gi|NP_999320.2| T-cell surface glycoprotein CD3 zeta chain [Sus... 50 1e-06
>ref|XP_003355138.1| PREDICTED: high affinity immunoglobulin epsilon receptor subunit
gamma-like [Sus scrofa].
Length = 86
Score = 139 bits (349), Expect = 2e-33
Identities = 67/67 (100%), Positives = 67/67 (100%)
Frame = +1
Query: 127 GEPQLCYILDAILFLYGIVLTLLYCRLKLQVRKAAIDSYEKSDGVYTGLSTRNQETYETL 306
GEPQLCYILDAILFLYGIVLTLLYCRLKLQVRKAAIDSYEKSDGVYTGLSTRNQETYETL
Sbjct: 20 GEPQLCYILDAILFLYGIVLTLLYCRLKLQVRKAAIDSYEKSDGVYTGLSTRNQETYETL 79
Query: 307 KHEKPPQ 327
KHEKPPQ
Sbjct: 80 KHEKPPQ 86
>ref|NP_001001265.1| high affinity immunoglobulin epsilon receptor subunit gamma
precursor [Sus scrofa].
Length = 86
Score = 139 bits (349), Expect = 2e-33
Identities = 67/67 (100%), Positives = 67/67 (100%)
Frame = +1
Query: 127 GEPQLCYILDAILFLYGIVLTLLYCRLKLQVRKAAIDSYEKSDGVYTGLSTRNQETYETL 306
GEPQLCYILDAILFLYGIVLTLLYCRLKLQVRKAAIDSYEKSDGVYTGLSTRNQETYETL
Sbjct: 20 GEPQLCYILDAILFLYGIVLTLLYCRLKLQVRKAAIDSYEKSDGVYTGLSTRNQETYETL 79
Query: 307 KHEKPPQ 327
KHEKPPQ
Sbjct: 80 KHEKPPQ 86
>ref|NP_999320.2| T-cell surface glycoprotein CD3 zeta chain [Sus scrofa].
Length = 166
Score = 50.1 bits (118), Expect = 1e-06
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Frame = +1
Query: 130 EPQLCYILDAILFLYGIVLTLLYCRLKLQVRKAAIDSYEKSDG-VYTGLSTRNQETYETL 306
+P+LCY+LD ILF+YG+++T L+ R K R A + +Y+ VY L+ +E Y L
Sbjct: 28 DPKLCYLLDGILFIYGVIITALFLREKFS-RSADVSAYQSGQNQVYNELNIGRREEYAVL 86
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 15,817,432
Number of extensions: 469134
Number of successful extensions: 1123
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1122
Number of HSP's successfully gapped: 3
Length of query: 218
Length of database: 11,343,932
Length adjustment: 95
Effective length of query: 123
Effective length of database: 8,978,717
Effective search space: 1104382191
Effective search space used: 1104382191
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AMP01_0076_B01
(655 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 708 0.0
>Sscrofa_Chr04
|| Length = 143465943
Score = 708 bits (357), Expect = 0.0
Identities = 357/357 (100%)
Strand = Plus / Minus
Query: 267 gggcctgagcacccggaaccaggagacttatgagaccctgaagcatgagaaaccaccaca 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97099508 gggcctgagcacccggaaccaggagacttatgagaccctgaagcatgagaaaccaccaca 97099449
Query: 327 gtaaatttagaacagatgccctttgtcacttccttcttccactttcctcttagtccccgt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97099448 gtaaatttagaacagatgccctttgtcacttccttcttccactttcctcttagtccccgt 97099389
Query: 387 ggttggcatcacatatgcctccctgccactaatgccagctgaccctgtccctgtaatgat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97099388 ggttggcatcacatatgcctccctgccactaatgccagctgaccctgtccctgtaatgat 97099329
Query: 447 gctatgcccccattaataggcaccagtggttcctcctccctgtcaaaggcctcagatgct 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97099328 gctatgcccccattaataggcaccagtggttcctcctccctgtcaaaggcctcagatgct 97099269
Query: 507 cttcattaatgtttgtattcttgtctcacccccttatggaaccttctaaatcttccccat 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97099268 cttcattaatgtttgtattcttgtctcacccccttatggaaccttctaaatcttccccat 97099209
Query: 567 ccccaactccctctaaacaatgggaagggactaccatcaataaagccgccacagact 623
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97099208 ccccaactccctctaaacaatgggaagggactaccatcaataaagccgccacagact 97099152
Score = 234 bits (118), Expect = 5e-59
Identities = 118/118 (100%)
Strand = Plus / Minus
Query: 1 agagcacagctgcgcagtgctgtcagtgtgtgcgatccctggctctcggcccctcagtcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97103073 agagcacagctgcgcagtgctgtcagtgtgtgcgatccctggctctcggcccctcagtcc 97103014
Query: 61 ttacccaagatgattccagcagtggtcttgctcttactccttttggttgaacaagcag 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97103013 ttacccaagatgattccagcagtggtcttgctcttactccttttggttgaacaagcag 97102956
Score = 188 bits (95), Expect = 3e-45
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 116 cagcggccctgggagaacctcagctctgctatatcctggatgcgatcctctttctgtatg 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97100435 cagcggccctgggagaacctcagctctgctatatcctggatgcgatcctctttctgtatg 97100376
Query: 176 gcattgtcctcaccctcctctactgtcgactcaag 210
|||||||||||||||||||||||||||||||||||
Sbjct: 97100375 gcattgtcctcaccctcctctactgtcgactcaag 97100341
Score = 77.8 bits (39), Expect = 7e-12
Identities = 42/43 (97%)
Strand = Plus / Minus
Query: 204 actcaagctccaggtgcgaaaggcagctatagacagctatgag 246
|||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 97100185 actccagctccaggtgcgaaaggcagctatagacagctatgag 97100143
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 18,601,462
Number of extensions: 355
Number of successful extensions: 355
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 355
Number of HSP's successfully gapped: 4
Length of query: 655
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 634
Effective length of database: 2,808,413,156
Effective search space: 1780533940904
Effective search space used: 1780533940904
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)