Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DCI01_0022_F02
(1547 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030215.1| beta-galactosidase precursor [Bos taurus]. 663 0.0
Alignment gi|NP_001192931.1| beta-galactosidase-1-like protein [Bos tauru... 384 e-107
Alignment gi|XP_002685627.1| PREDICTED: galactosidase, beta 1-like [Bos t... 384 e-107
Alignment gi|XP_002693892.1| PREDICTED: galactosidase, beta 1-like [Bos t... 184 1e-46
Alignment gi|XP_597358.2| PREDICTED: galactosidase, beta 1-like [Bos taur... 184 1e-46
Alignment gi|XP_002693891.1| PREDICTED: galactosidase, beta 1-like [Bos t... 171 2e-42
Alignment gi|XP_600640.5| PREDICTED: galactosidase, beta 1-like [Bos taur... 171 2e-42
Alignment gi|XP_001254795.2| PREDICTED: galactosidase, beta 1-like [Bos t... 93 7e-19
>ref|NP_001030215.1| beta-galactosidase precursor [Bos taurus].
Length = 653
Score = 663 bits (1711), Expect = 0.0
Identities = 317/393 (80%), Positives = 340/393 (86%), Gaps = 2/393 (0%)
Frame = +3
Query: 3 PRGPLINSEFYTGWLDHWGQPHSTVKTQVVASFLHDILALGANVNMYMFIGGTNFAYWNG 182
P GPL+NSEFYTGWLDHWGQ HSTV ++ VA LHD+LALGANVNMYMFIGGTNFAYWNG
Sbjct: 259 PTGPLVNSEFYTGWLDHWGQRHSTVSSKAVAFTLHDMLALGANVNMYMFIGGTNFAYWNG 318
Query: 183 ANTPYQPQPTSYDYDAPLSEAGDLTEKYFALRDVIQKFKKVPEGLIPPSTPKFAYGKVAL 362
AN PYQPQPTSYDYDAPLSEAGDLTEKYFALRD+IQKF KVPEG IPPSTPKFAYGKVAL
Sbjct: 319 ANIPYQPQPTSYDYDAPLSEAGDLTEKYFALRDIIQKFAKVPEGPIPPSTPKFAYGKVAL 378
Query: 363 KKLKTVVEALDILCPSGPIKSFYPLTFIQVKQYFGFVLYRTTLPKDCKDPTHLSSPFNGV 542
KLKTV +AL+ILCPSGPIKS YPLTFI VKQYFGFVLYRT LP+DC DPT LSSP +GV
Sbjct: 379 NKLKTVEDALNILCPSGPIKSVYPLTFIDVKQYFGFVLYRTMLPEDCSDPTPLSSPLSGV 438
Query: 543 HDRAYVSVDGVPQGVLERNIVITLNITGKAGATLDLLVENMGRVNYGNSINDFKGLISNL 722
HDRAYVSV+GV QG+LER VITLNITGKAGATLDLLVENMGRVNYG+SINDFKGL+SNL
Sbjct: 439 HDRAYVSVNGVAQGILERESVITLNITGKAGATLDLLVENMGRVNYGSSINDFKGLVSNL 498
Query: 723 TLGSSILTDWQIFPMDTEDAVRRYLGAWHGYGGKGHHEAHTHSPSEYTLPAFYVANFSIP 902
TLGS ILT+W+IFP+D EDAVR +LG W G H++A HSP Y LP FYV NF+IP
Sbjct: 499 TLGSKILTNWEIFPLDMEDAVRSHLGTWGGRDRGYHNKARAHSPPTYALPTFYVGNFTIP 558
Query: 903 SEIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPARGPQKTLFVPQHILVTSAPNTIIVL 1082
S I DLPQDTFIQFPGWTKGQVWINGFNLGRYWP RGPQ TLFVPQHILVTS PNTI+VL
Sbjct: 559 SGIADLPQDTFIQFPGWTKGQVWINGFNLGRYWPVRGPQMTLFVPQHILVTSTPNTIVVL 618
Query: 1083 ELEHAPCGDKEP--CTVEFVDKPLIGATETWSH 1175
ELEHAPC D P CTVEFVDKP+ +T H
Sbjct: 619 ELEHAPCQDGGPELCTVEFVDKPVFRTVQTHRH 651
>ref|NP_001192931.1| beta-galactosidase-1-like protein [Bos taurus].
Length = 647
Score = 384 bits (987), Expect = e-107
Identities = 203/395 (51%), Positives = 263/395 (66%), Gaps = 3/395 (0%)
Frame = +3
Query: 3 PRGPLINSEFYTGWLDHWGQPHSTVKTQVVASFLHDILALGANVNMYMFIGGTNFAYWNG 182
PRGPL+NSE+YTGWLD+WGQ HST V L +L LGA+VNMYMF GGTNF YWNG
Sbjct: 255 PRGPLVNSEYYTGWLDYWGQNHSTRSIPAVTKGLEKMLKLGASVNMYMFHGGTNFGYWNG 314
Query: 183 ANTP--YQPQPTSYDYDAPLSEAGDLTEKYFALRDVIQKFKKVPEGLIPPSTPKFAYGKV 356
A+ + P TSYDYDAP+SEAGD T K FA+R+VI KF++VP G +PP +PK G +
Sbjct: 315 ADEKGRFLPITTSYDYDAPISEAGDPTPKLFAIRNVISKFQEVPLGPLPPPSPKMTLGPL 374
Query: 357 ALKKLKTVVEALDILCPSGPIKSFYPLTFIQVKQYFGFVLYRTTLPKDCKDPTHLSSPFN 536
L +++ LD LCP GPI S P+TF V Q G++LYRT LP +PT L P N
Sbjct: 375 NLHLDGNLLDFLDFLCPQGPIHSVLPMTFEAVNQVHGYMLYRTYLPHTVSEPTQLWVPNN 434
Query: 537 GVHDRAYVSVDGVPQGVLERNIVITLNITGKAGATLDLLVENMGRVNYGNSINDFKGLIS 716
GVHDRAYV VDGV QGVLERN+ L + GK GATLD+L+ENMGR+++G++ +DFKGL+
Sbjct: 435 GVHDRAYVMVDGVFQGVLERNMKHNLFLMGKIGATLDVLLENMGRLSFGSNSSDFKGLLQ 494
Query: 717 NLTLGSSILTDWQIFPMDTEDAVRRYLGAWHGYGGKGHHEAHTHSPSEYTLPAFYVANFS 896
LG +ILT W +FP+ ++ V+ W H +H +PS P FY F
Sbjct: 495 PPILGQTILTQWLMFPLKVDNLVK----GWFPIQPLKH--SHPQTPSG---PTFYSTTFP 545
Query: 897 IPSEIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPARGPQKTLFVPQHILV-TSAPNTI 1073
I + DTF+ PGWTKGQVWINGFNLGRYW RGPQ+TL+VP+ +L A N I
Sbjct: 546 ILNS----GGDTFLFLPGWTKGQVWINGFNLGRYWTKRGPQQTLYVPRPLLFPRGAHNRI 601
Query: 1074 IVLELEHAPCGDKEPCTVEFVDKPLIGATETWSHV 1178
+LELE+ P +P ++F+D+P++ +T+ ++V
Sbjct: 602 TLLELENVP---PQP-QIQFLDRPILNSTKHRTYV 632
>ref|XP_002685627.1| PREDICTED: galactosidase, beta 1-like [Bos taurus].
Length = 647
Score = 384 bits (987), Expect = e-107
Identities = 203/395 (51%), Positives = 263/395 (66%), Gaps = 3/395 (0%)
Frame = +3
Query: 3 PRGPLINSEFYTGWLDHWGQPHSTVKTQVVASFLHDILALGANVNMYMFIGGTNFAYWNG 182
PRGPL+NSE+YTGWLD+WGQ HST V L +L LGA+VNMYMF GGTNF YWNG
Sbjct: 255 PRGPLVNSEYYTGWLDYWGQNHSTRSIPAVTKGLEKMLKLGASVNMYMFHGGTNFGYWNG 314
Query: 183 ANTP--YQPQPTSYDYDAPLSEAGDLTEKYFALRDVIQKFKKVPEGLIPPSTPKFAYGKV 356
A+ + P TSYDYDAP+SEAGD T K FA+R+VI KF++VP G +PP +PK G +
Sbjct: 315 ADEKGRFLPITTSYDYDAPISEAGDPTPKLFAIRNVISKFQEVPLGPLPPPSPKMTLGPL 374
Query: 357 ALKKLKTVVEALDILCPSGPIKSFYPLTFIQVKQYFGFVLYRTTLPKDCKDPTHLSSPFN 536
L +++ LD LCP GPI S P+TF V Q G++LYRT LP +PT L P N
Sbjct: 375 NLHLDGNLLDFLDFLCPQGPIHSVLPMTFEAVNQVHGYMLYRTYLPHTVSEPTQLWVPNN 434
Query: 537 GVHDRAYVSVDGVPQGVLERNIVITLNITGKAGATLDLLVENMGRVNYGNSINDFKGLIS 716
GVHDRAYV VDGV QGVLERN+ L + GK GATLD+L+ENMGR+++G++ +DFKGL+
Sbjct: 435 GVHDRAYVMVDGVFQGVLERNMKHNLFLMGKIGATLDVLLENMGRLSFGSNSSDFKGLLQ 494
Query: 717 NLTLGSSILTDWQIFPMDTEDAVRRYLGAWHGYGGKGHHEAHTHSPSEYTLPAFYVANFS 896
LG +ILT W +FP+ ++ V+ W H +H +PS P FY F
Sbjct: 495 PPILGQTILTQWLMFPLKVDNLVK----GWFPIQPLKH--SHPQTPSG---PTFYSTTFP 545
Query: 897 IPSEIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPARGPQKTLFVPQHILV-TSAPNTI 1073
I + DTF+ PGWTKGQVWINGFNLGRYW RGPQ+TL+VP+ +L A N I
Sbjct: 546 ILNS----GGDTFLFLPGWTKGQVWINGFNLGRYWTKRGPQQTLYVPRPLLFPRGAHNRI 601
Query: 1074 IVLELEHAPCGDKEPCTVEFVDKPLIGATETWSHV 1178
+LELE+ P +P ++F+D+P++ +T+ ++V
Sbjct: 602 TLLELENVP---PQP-QIQFLDRPILNSTKHRTYV 632
>ref|XP_002693892.1| PREDICTED: galactosidase, beta 1-like [Bos taurus].
Length = 758
Score = 184 bits (468), Expect = 1e-46
Identities = 138/393 (35%), Positives = 197/393 (50%), Gaps = 9/393 (2%)
Frame = +3
Query: 12 PLINSEFYTGWLDHWGQPHSTVKTQVVASFLHDILALGANVNMYMFIGGTNFAYWNGAN- 188
P + E++TGW D WG PH + + V + + I+ G+++N+YMF GGTNF + GA
Sbjct: 394 PKMVMEYWTGWFDSWGGPHYILDSSEVLNTVSAIVKAGSSINLYMFHGGTNFGFIGGAMH 453
Query: 189 -TPYQPQPTSYDYDAPLSEAGDLTEKYFALRDVIQKFKKVPEGLIPPSTPKFAYGKVALK 365
Y+P TSYDYDA L+EAGD T KY LR+ P + P PK AY V
Sbjct: 454 FQDYKPDVTSYDYDAVLTEAGDYTAKYTKLREFFGSMAGAPLPVPPDLLPKTAYDPVTPA 513
Query: 366 KLKTVVEALDILCPSGPIKSFYPLTFIQVK------QYFGFVLYRTTLPKDCKDPTHLSS 527
++ +AL+ L P+ S +P+ + Q FG+ LY TT+ T
Sbjct: 514 FYVSLWDALNFL--ELPVTSEHPVNMENLPINGGSGQSFGYTLYETTI-------TASGV 564
Query: 528 PFNGVHDRAYVSVDGVPQGVLERNIVITLNITGKAGATLDLLVENMGRVNYGNSIN-DFK 704
V DR V ++ G L+ + T + TL +LVEN GRVNYG++I+ K
Sbjct: 565 LTALVRDRGQVFLNTFFLGTLDYKKKTIVIPTVQGFTTLRILVENCGRVNYGDNIDQQRK 624
Query: 705 GLISNLTLGSSILTDWQIFPMDTEDAVRRYLGAWHGYGGKGHHEAHTHSPSEYTLPAFYV 884
G+I N+ L S L ++I+ ++ + R +L + K E E PAF++
Sbjct: 625 GIIGNVYLNDSPLKKFKIYSLEMD---RSFLQRFTADKWKPLTE-------EPMFPAFFL 674
Query: 885 ANFSIPSEIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPARGPQKTLFVPQHILVTSAP 1064
S + D P DTF++ GW KG V+IN NLGRYW GPQ+TL++P L
Sbjct: 675 GALS----VLDSPYDTFVKLEGWEKGVVFINNQNLGRYWNI-GPQETLYLPGAWLDVGL- 728
Query: 1065 NTIIVLELEHAPCGDKEPCTVEFVDKPLIGATE 1163
N IIV E + A ++FVD P +G E
Sbjct: 729 NKIIVFEEKMA------QRIIQFVDTPNLGQHE 755
>ref|XP_597358.2| PREDICTED: galactosidase, beta 1-like [Bos taurus].
Length = 758
Score = 184 bits (468), Expect = 1e-46
Identities = 138/393 (35%), Positives = 197/393 (50%), Gaps = 9/393 (2%)
Frame = +3
Query: 12 PLINSEFYTGWLDHWGQPHSTVKTQVVASFLHDILALGANVNMYMFIGGTNFAYWNGAN- 188
P + E++TGW D WG PH + + V + + I+ G+++N+YMF GGTNF + GA
Sbjct: 394 PKMVMEYWTGWFDSWGGPHYILDSSEVLNTVSAIVKAGSSINLYMFHGGTNFGFIGGAMH 453
Query: 189 -TPYQPQPTSYDYDAPLSEAGDLTEKYFALRDVIQKFKKVPEGLIPPSTPKFAYGKVALK 365
Y+P TSYDYDA L+EAGD T KY LR+ P + P PK AY V
Sbjct: 454 FQDYKPDVTSYDYDAVLTEAGDYTAKYTKLREFFGSMAGAPLPVPPDLLPKTAYDPVTPA 513
Query: 366 KLKTVVEALDILCPSGPIKSFYPLTFIQVK------QYFGFVLYRTTLPKDCKDPTHLSS 527
++ +AL+ L P+ S +P+ + Q FG+ LY TT+ T
Sbjct: 514 FYVSLWDALNFL--ELPVTSEHPVNMENLPINGGSGQSFGYTLYETTI-------TASGV 564
Query: 528 PFNGVHDRAYVSVDGVPQGVLERNIVITLNITGKAGATLDLLVENMGRVNYGNSIN-DFK 704
V DR V ++ G L+ + T + TL +LVEN GRVNYG++I+ K
Sbjct: 565 LTALVRDRGQVFLNTFFLGTLDYKKKTIVIPTVQGFTTLRILVENCGRVNYGDNIDQQRK 624
Query: 705 GLISNLTLGSSILTDWQIFPMDTEDAVRRYLGAWHGYGGKGHHEAHTHSPSEYTLPAFYV 884
G+I N+ L S L ++I+ ++ + R +L + K E E PAF++
Sbjct: 625 GIIGNVYLNDSPLKKFKIYSLEMD---RSFLQRFTADKWKPLTE-------EPMFPAFFL 674
Query: 885 ANFSIPSEIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPARGPQKTLFVPQHILVTSAP 1064
S + D P DTF++ GW KG V+IN NLGRYW GPQ+TL++P L
Sbjct: 675 GALS----VLDSPYDTFVKLEGWEKGVVFINNQNLGRYWNI-GPQETLYLPGAWLDVGL- 728
Query: 1065 NTIIVLELEHAPCGDKEPCTVEFVDKPLIGATE 1163
N IIV E + A ++FVD P +G E
Sbjct: 729 NKIIVFEEKMA------QRIIQFVDTPNLGQHE 755
>ref|XP_002693891.1| PREDICTED: galactosidase, beta 1-like [Bos taurus].
Length = 899
Score = 171 bits (432), Expect = 2e-42
Identities = 129/377 (34%), Positives = 183/377 (48%), Gaps = 12/377 (3%)
Frame = +3
Query: 12 PLINSEFYTGWLDHWGQPHSTVKTQVVASFLHDILALGANVNMYMFIGGTNFAYWNGANT 191
P++ EF+ GW D WG H + V + + + G + N+YMF GGTNF + NGA +
Sbjct: 537 PILIMEFWVGWFDTWGIDHRVMGVNEVEKSVSEFIRYGISFNVYMFHGGTNFGFMNGATS 596
Query: 192 --PYQPQPTSYDYDAPLSEAGDLTEKYFALRDVIQKFKKVPEGLIPPSTPKFAYGKVALK 365
++ TSYDYDA L+EAGD T KYF LR + + P +P TPK Y + L
Sbjct: 597 FEKHRGVTTSYDYDAVLTEAGDYTAKYFMLRSLFESILVRPLPPVPSPTPKAVYPSLKLS 656
Query: 366 KLKTVVEALDILCPSGPIKSFYPLTFIQVK------QYFGFVLYRTTLPKDCKDPTHLSS 527
+ EAL L P+ S P+ + Q FGFVLY T+ + H ++
Sbjct: 657 HYLPLWEALPYL--QRPVTSNVPINMENLPINNGNGQSFGFVLYEMTICSGGR--LHANA 712
Query: 528 PFNGVHDRAYVSVDGVPQGVLERNIVITLNITGKAGA-TLDLLVENMGRVNYGNSI-NDF 701
D A V ++ G+L ++ ++I L +LVEN GRVN+ I N
Sbjct: 713 -----QDEAQVFLNETSLGIL-TDVYRDIDIPPITECQLLRILVENQGRVNFSWKIQNQR 766
Query: 702 KGLISNLTLGSSILTDWQIFPMDTEDAVRRYL--GAWHGYGGKGHHEAHTHSPSEYTLPA 875
KGLI +TL L + I+ ++ + + L W GG PS + PA
Sbjct: 767 KGLIGPVTLDKIPLNWFTIYSLELKTQFFKKLRSARWRPLGG----------PS--SSPA 814
Query: 876 FYVANFSIPSEIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPARGPQKTLFVPQHILVT 1055
F++ S PQDTF+Q GW +G V+ING NLGRYW GPQ+ L++P L
Sbjct: 815 FHLGTLMADSS----PQDTFLQLLGWNRGCVFINGRNLGRYWNI-GPQEALYLPGSWL-Q 868
Query: 1056 SAPNTIIVLELEHAPCG 1106
N I++ E E + G
Sbjct: 869 PGTNEIVLFEKEKSGSG 885
>ref|XP_600640.5| PREDICTED: galactosidase, beta 1-like [Bos taurus].
Length = 899
Score = 171 bits (432), Expect = 2e-42
Identities = 129/377 (34%), Positives = 183/377 (48%), Gaps = 12/377 (3%)
Frame = +3
Query: 12 PLINSEFYTGWLDHWGQPHSTVKTQVVASFLHDILALGANVNMYMFIGGTNFAYWNGANT 191
P++ EF+ GW D WG H + V + + + G + N+YMF GGTNF + NGA +
Sbjct: 537 PILIMEFWVGWFDTWGIDHRVMGVNEVEKSVSEFIRYGISFNVYMFHGGTNFGFMNGATS 596
Query: 192 --PYQPQPTSYDYDAPLSEAGDLTEKYFALRDVIQKFKKVPEGLIPPSTPKFAYGKVALK 365
++ TSYDYDA L+EAGD T KYF LR + + P +P TPK Y + L
Sbjct: 597 FEKHRGVTTSYDYDAVLTEAGDYTAKYFMLRSLFESILVRPLPPVPSPTPKAVYPSLKLS 656
Query: 366 KLKTVVEALDILCPSGPIKSFYPLTFIQVK------QYFGFVLYRTTLPKDCKDPTHLSS 527
+ EAL L P+ S P+ + Q FGFVLY T+ + H ++
Sbjct: 657 HYLPLWEALPYL--QRPVTSNVPINMENLPINNGNGQSFGFVLYEMTICSGGR--LHANA 712
Query: 528 PFNGVHDRAYVSVDGVPQGVLERNIVITLNITGKAGA-TLDLLVENMGRVNYGNSI-NDF 701
D A V ++ G+L ++ ++I L +LVEN GRVN+ I N
Sbjct: 713 -----QDEAQVFLNETSLGIL-TDVYRDIDIPPITECQLLRILVENQGRVNFSWKIQNQR 766
Query: 702 KGLISNLTLGSSILTDWQIFPMDTEDAVRRYL--GAWHGYGGKGHHEAHTHSPSEYTLPA 875
KGLI +TL L + I+ ++ + + L W GG PS + PA
Sbjct: 767 KGLIGPVTLDKIPLNWFTIYSLELKTQFFKKLRSARWRPLGG----------PS--SSPA 814
Query: 876 FYVANFSIPSEIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPARGPQKTLFVPQHILVT 1055
F++ S PQDTF+Q GW +G V+ING NLGRYW GPQ+ L++P L
Sbjct: 815 FHLGTLMADSS----PQDTFLQLLGWNRGCVFINGRNLGRYWNI-GPQEALYLPGSWL-Q 868
Query: 1056 SAPNTIIVLELEHAPCG 1106
N I++ E E + G
Sbjct: 869 PGTNEIVLFEKEKSGSG 885
>ref|XP_001254795.2| PREDICTED: galactosidase, beta 1-like [Bos taurus].
Length = 393
Score = 92.8 bits (229), Expect = 7e-19
Identities = 95/306 (31%), Positives = 140/306 (45%), Gaps = 11/306 (3%)
Frame = +3
Query: 201 PQPTSYDYDAPLSEAGDLTEKYFALRDVIQKFKKVPEGLIPPSTPKFAYGKVALKKLKTV 380
P DY A L+E G T +Y V Q+F + G + T+
Sbjct: 115 PAARLIDYGALLTEDGGYTPEYL----VFQEFFRPDAGHF-------------ISLWDTL 157
Query: 381 VEALDILCPSGPIKSFYPLTFIQVK------QYFGFVLYRTTLPKDCKDPTHLSSPFNGV 542
+ D P++S PL+ Q+ Q G++LY T + + + + V
Sbjct: 158 IHQDD-----EPVRSTGPLSMEQLSVNEGSGQSAGYILYETVITRG-----GILNSDGHV 207
Query: 543 HDRAYVSVDGVPQGVLE-RNIVITLNITG-KAGATLDLLVENMGRVNYGNSIN-DFKGLI 713
DR V +D GVL+ + +TL K TL +LVEN GR+ G S+N + KGL
Sbjct: 208 KDRGQVFLDDKYIGVLDDTHQKLTLPSDHYKEFLTLRILVENQGRLASGTSMNQERKGLT 267
Query: 714 SNLTLGSSILTDWQIFPMDTEDAV--RRYLGAWHGYGGKGHHEAHTHSPSEYTLPAFYVA 887
N+ L S L ++I+ ++ ++ R+ W + H+ PAF++A
Sbjct: 268 GNIYLNGSPLRKFKIYSLEMQNKFIQRKLPNIWK--------PSFLHTVG----PAFFLA 315
Query: 888 NFSIPSEIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPARGPQKTLFVPQHILVTSAPN 1067
+ S+ P+DTF+ GWTKG V+ING NLGRYW GPQ+TL+VP L N
Sbjct: 316 LLRVGSQ----PKDTFMSLQGWTKGVVFINGQNLGRYWNV-GPQETLYVPGPWLKPGL-N 369
Query: 1068 TIIVLE 1085
IIV E
Sbjct: 370 EIIVFE 375
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 67,315,310
Number of extensions: 2036700
Number of successful extensions: 6491
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 6454
Number of HSP's successfully gapped: 8
Length of query: 515
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 408
Effective length of database: 14,140,958
Effective search space: 5769510864
Effective search space used: 5769510864
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DCI01_0022_F02
(1547 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001032730.1| beta-galactosidase precursor [Canis lupus fa... 690 0.0
Alignment gi|XP_851411.1| PREDICTED: similar to galactosidase, beta 1-lik... 378 e-105
Alignment gi|XP_536076.2| PREDICTED: similar to galactosidase, beta 1-lik... 231 1e-60
Alignment gi|XP_863702.1| PREDICTED: similar to galactosidase, beta 1-lik... 198 1e-50
Alignment gi|XP_855708.1| PREDICTED: similar to CG3132-PA isoform 3 [Cani... 193 3e-49
Alignment gi|XP_855681.1| PREDICTED: similar to CG3132-PA isoform 2 [Cani... 193 3e-49
Alignment gi|XP_848226.1| PREDICTED: similar to CG3132-PA isoform 1 [Cani... 193 3e-49
Alignment gi|XP_546385.2| PREDICTED: similar to T19B10.3 [Canis familiari... 155 8e-38
Alignment gi|XP_849131.1| PREDICTED: similar to beta-galactosidase-like p... 143 4e-34
>ref|NP_001032730.1| beta-galactosidase precursor [Canis lupus familiaris].
Length = 668
Score = 690 bits (1781), Expect = 0.0
Identities = 328/397 (82%), Positives = 353/397 (88%), Gaps = 2/397 (0%)
Frame = +3
Query: 3 PRGPLINSEFYTGWLDHWGQPHSTVKTQVVASFLHDILALGANVNMYMFIGGTNFAYWNG 182
P+GPL+NSEFYTGWLDHWGQPHSTV+T+VVAS LHDILA GANVN+YMFIGGTNFAYWNG
Sbjct: 261 PKGPLVNSEFYTGWLDHWGQPHSTVRTEVVASSLHDILAHGANVNLYMFIGGTNFAYWNG 320
Query: 183 ANTPYQPQPTSYDYDAPLSEAGDLTEKYFALRDVIQKFKKVPEGLIPPSTPKFAYGKVAL 362
AN PYQ QPTSYDYDAPLSEAGDLTEKYFALR+VI+KF+KVPEG IPPSTPKFAYGKVAL
Sbjct: 321 ANMPYQAQPTSYDYDAPLSEAGDLTEKYFALREVIRKFEKVPEGFIPPSTPKFAYGKVAL 380
Query: 363 KKLKTVVEALDILCPSGPIKSFYPLTFIQVKQYFGFVLYRTTLPKDCKDPTHLSSPFNGV 542
KKLKTV EAL++LCP GPI S YPLTFIQVKQYFGFV+YRTTLP+DC DPT LSSP +GV
Sbjct: 381 KKLKTVEEALNVLCPPGPINSLYPLTFIQVKQYFGFVMYRTTLPQDCSDPTPLSSPLSGV 440
Query: 543 HDRAYVSVDGVPQGVLERNIVITLNITGKAGATLDLLVENMGRVNYGNSINDFKGLISNL 722
HDRAYVSVDGVPQGV+ER+ VITLNITGKAGATLDLLVENMGRVNYG INDFKGLISNL
Sbjct: 441 HDRAYVSVDGVPQGVMERSNVITLNITGKAGATLDLLVENMGRVNYGRYINDFKGLISNL 500
Query: 723 TLGSSILTDWQIFPMDTEDAVRRYLGAWHGYGGKGHHEAHTHSPSEYTLPAFYVANFSIP 902
TLGSSILT+W IFP++TEDAVR +LG WHG H + H S YTLPAFY+ NFSIP
Sbjct: 501 TLGSSILTNWMIFPLNTEDAVRSHLGGWHGPNNGRHDKTFAHRSSNYTLPAFYMGNFSIP 560
Query: 903 SEIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPARGPQKTLFVPQHILVTSAPNTIIVL 1082
S IPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPARGPQ TLFVP+HILVTS PNTI+VL
Sbjct: 561 SGIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPARGPQMTLFVPRHILVTSTPNTIMVL 620
Query: 1083 ELEHAPCGDKEP--CTVEFVDKPLIGATETWSHVPQD 1187
ELEHAPCGD P CTVEFVD+P+IGA T H P D
Sbjct: 621 ELEHAPCGDSGPEVCTVEFVDRPVIGAPPTPGHPPPD 657
>ref|XP_851411.1| PREDICTED: similar to galactosidase, beta 1-like isoform 2 [Canis
familiaris].
Length = 651
Score = 378 bits (971), Expect = e-105
Identities = 197/389 (50%), Positives = 253/389 (65%), Gaps = 3/389 (0%)
Frame = +3
Query: 3 PRGPLINSEFYTGWLDHWGQPHSTVKTQVVASFLHDILALGANVNMYMFIGGTNFAYWNG 182
P GPL+NSE+YTGWLD+WGQ HST V L ++L LGA+VNMYMF GGTNF YWNG
Sbjct: 255 PHGPLVNSEYYTGWLDYWGQNHSTRSVLAVTRGLENMLKLGASVNMYMFHGGTNFGYWNG 314
Query: 183 ANTP--YQPQPTSYDYDAPLSEAGDLTEKYFALRDVIQKFKKVPEGLIPPSTPKFAYGKV 356
A+ + P TSYDYDAP+SEAGDLT K FALR+VI +F+++P G +PP +PK G +
Sbjct: 315 ADEKGRFLPITTSYDYDAPISEAGDLTPKLFALRNVISEFQEIPLGPLPPPSPKMMLGPL 374
Query: 357 ALKKLKTVVEALDILCPSGPIKSFYPLTFIQVKQYFGFVLYRTTLPKDCKDPTHLSSPFN 536
L ++ LD LCP GPI S PL+F VKQ GF+LYRT LP +PT P N
Sbjct: 375 TLHLDGDLLAFLDFLCPQGPIHSILPLSFEAVKQDHGFMLYRTFLPHPIPEPTQFWVPNN 434
Query: 537 GVHDRAYVSVDGVPQGVLERNIVITLNITGKAGATLDLLVENMGRVNYGNSINDFKGLIS 716
GVHDRAYV VDGV GVLERN+ L +TGK GA LD+L+ENMGR+++G++ +DFKGL+
Sbjct: 435 GVHDRAYVMVDGVFHGVLERNMKHQLFLTGKGGAKLDILLENMGRLSFGSNSSDFKGLLE 494
Query: 717 NLTLGSSILTDWQIFPMDTEDAVRRYLGAWHGYGGKGHHEAHTHSPSEYTLPAFYVANFS 896
LG +LT W +FP++ + V+ + H + P + P FY F
Sbjct: 495 PPVLGQMVLTQWLMFPLNVDKLVKWWFPL---------HLMKSTRPQAPSGPTFYSTTFP 545
Query: 897 IPSEIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPARGPQKTLFVPQHILVT-SAPNTI 1073
I E DTF+ PGWTKGQVWINGFNLGRYW RGPQ+TL+VP+ +L + N I
Sbjct: 546 IFGE----GGDTFLFLPGWTKGQVWINGFNLGRYWTKRGPQQTLYVPRPLLFSRGGLNKI 601
Query: 1074 IVLELEHAPCGDKEPCTVEFVDKPLIGAT 1160
+LELE P + ++FVD+P++ +T
Sbjct: 602 TLLELESVPLQPQ----IQFVDRPILNST 626
>ref|XP_536076.2| PREDICTED: similar to galactosidase, beta 1-like isoform 1 [Canis
familiaris].
Length = 283
Score = 231 bits (589), Expect = 1e-60
Identities = 124/258 (48%), Positives = 161/258 (62%), Gaps = 1/258 (0%)
Frame = +3
Query: 390 LDILCPSGPIKSFYPLTFIQVKQYFGFVLYRTTLPKDCKDPTHLSSPFNGVHDRAYVSVD 569
LD LCP GPI S PL+F VKQ GF+LYRT LP +PT P NGVHDRAYV VD
Sbjct: 18 LDFLCPQGPIHSILPLSFEAVKQDHGFMLYRTFLPHPIPEPTQFWVPNNGVHDRAYVMVD 77
Query: 570 GVPQGVLERNIVITLNITGKAGATLDLLVENMGRVNYGNSINDFKGLISNLTLGSSILTD 749
GV GVLERN+ L +TGK GA LD+L+ENMGR+++G++ +DFKGL+ LG +LT
Sbjct: 78 GVFHGVLERNMKHQLFLTGKGGAKLDILLENMGRLSFGSNSSDFKGLLEPPVLGQMVLTQ 137
Query: 750 WQIFPMDTEDAVRRYLGAWHGYGGKGHHEAHTHSPSEYTLPAFYVANFSIPSEIPDLPQD 929
W +FP++ + V+ + H + P + P FY F I E D
Sbjct: 138 WLMFPLNVDKLVKWWFPL---------HLMKSTRPQAPSGPTFYSTTFPIFGE----GGD 184
Query: 930 TFIQFPGWTKGQVWINGFNLGRYWPARGPQKTLFVPQHILVT-SAPNTIIVLELEHAPCG 1106
TF+ PGWTKGQVWINGFNLGRYW RGPQ+TL+VP+ +L + N I +LELE P
Sbjct: 185 TFLFLPGWTKGQVWINGFNLGRYWTKRGPQQTLYVPRPLLFSRGGLNKITLLELESVPLQ 244
Query: 1107 DKEPCTVEFVDKPLIGAT 1160
+ ++FVD+P++ +T
Sbjct: 245 PQ----IQFVDRPILNST 258
>ref|XP_863702.1| PREDICTED: similar to galactosidase, beta 1-like isoform 3 [Canis
familiaris].
Length = 239
Score = 198 bits (504), Expect = 1e-50
Identities = 107/231 (46%), Positives = 143/231 (61%), Gaps = 1/231 (0%)
Frame = +3
Query: 471 VLYRTTLPKDCKDPTHLSSPFNGVHDRAYVSVDGVPQGVLERNIVITLNITGKAGATLDL 650
+LYRT LP +PT P NGVHDRAYV VDGV GVLERN+ L +TGK GA LD+
Sbjct: 1 MLYRTFLPHPIPEPTQFWVPNNGVHDRAYVMVDGVFHGVLERNMKHQLFLTGKGGAKLDI 60
Query: 651 LVENMGRVNYGNSINDFKGLISNLTLGSSILTDWQIFPMDTEDAVRRYLGAWHGYGGKGH 830
L+ENMGR+++G++ +DFKGL+ LG +LT W +FP++ + V+ +
Sbjct: 61 LLENMGRLSFGSNSSDFKGLLEPPVLGQMVLTQWLMFPLNVDKLVKWWFPL--------- 111
Query: 831 HEAHTHSPSEYTLPAFYVANFSIPSEIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPAR 1010
H + P + P FY F I E DTF+ PGWTKGQVWINGFNLGRYW R
Sbjct: 112 HLMKSTRPQAPSGPTFYSTTFPIFGE----GGDTFLFLPGWTKGQVWINGFNLGRYWTKR 167
Query: 1011 GPQKTLFVPQHILVT-SAPNTIIVLELEHAPCGDKEPCTVEFVDKPLIGAT 1160
GPQ+TL+VP+ +L + N I +LELE P + ++FVD+P++ +T
Sbjct: 168 GPQQTLYVPRPLLFSRGGLNKITLLELESVPLQPQ----IQFVDRPILNST 214
>ref|XP_855708.1| PREDICTED: similar to CG3132-PA isoform 3 [Canis familiaris].
Length = 631
Score = 193 bits (491), Expect = 3e-49
Identities = 140/397 (35%), Positives = 197/397 (49%), Gaps = 13/397 (3%)
Frame = +3
Query: 12 PLINSEFYTGWLDHWGQPHSTVKTQVVASFLHDILALGANVNMYMFIGGTNFAYWNGAN- 188
P + E++TGW D WG PH+ + + V + IL G+++N+YMF GGTNF + NGA
Sbjct: 267 PRMVMEYWTGWFDSWGGPHNILDSSEVLKTVSAILDAGSSINLYMFHGGTNFGFINGAMH 326
Query: 189 -TPYQPQPTSYDYDAPLSEAGDLTEKYFALRDVIQKFKKVPEGLIPPSTPKFAYGKVALK 365
Y+ TSYDYDA L+EAGD T KYF LRD VP P PK AY V
Sbjct: 327 FHEYKSDVTSYDYDAVLTEAGDYTAKYFKLRDFFGSLSGVPLPPQPSLLPKIAYEPVRPN 386
Query: 366 KLKTVVEALDILCPSGPIKSFYPLTFIQVK------QYFGFVLYRTTLPKDCKDPTHLSS 527
++ +AL + P+ S P+ + Q FG+ LY TT+ S
Sbjct: 387 LYLSLWDALQHM--EEPVSSEKPVNMENLPVNDGNGQSFGYTLYETTIAS--------SG 436
Query: 528 PFNG-VHDRAYVSVDGVPQGVLE---RNIVITLNITGKAGATLDLLVENMGRVNYGNSIN 695
+G V DR V V+ V G L+ + IVI L + L +LVEN GRVNYG++I+
Sbjct: 437 VLSGLVRDRGQVFVNTVSVGFLDYERKKIVIPL---VQGYTRLRILVENRGRVNYGDNID 493
Query: 696 D-FKGLISNLTLGSSILTDWQIFPMDTEDAVRRYLGAWHGYGGKGHHEAHTHSPSEYTLP 872
D KGLI N+ L + L ++I+ +D + + + + P T P
Sbjct: 494 DQRKGLIGNIYLNDAPLKKFRIYSLDMRKSFFQRFSV----------DKWSPIPEAPTFP 543
Query: 873 AFYVANFSIPSEIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPARGPQKTLFVPQHILV 1052
AF++ SI P DTF++ GW KG V+ING NLGRYW GPQ+TL++P L
Sbjct: 544 AFFLGALSISLS----PFDTFMKLEGWEKGVVFINGQNLGRYWNI-GPQETLYLPGAWLD 598
Query: 1053 TSAPNTIIVLELEHAPCGDKEPCTVEFVDKPLIGATE 1163
I+ E P ++F + P +G ++
Sbjct: 599 QGINQVIVFEERMAGP-------AIQFTETPHLGRSQ 628
>ref|XP_855681.1| PREDICTED: similar to CG3132-PA isoform 2 [Canis familiaris].
Length = 638
Score = 193 bits (491), Expect = 3e-49
Identities = 140/397 (35%), Positives = 197/397 (49%), Gaps = 13/397 (3%)
Frame = +3
Query: 12 PLINSEFYTGWLDHWGQPHSTVKTQVVASFLHDILALGANVNMYMFIGGTNFAYWNGAN- 188
P + E++TGW D WG PH+ + + V + IL G+++N+YMF GGTNF + NGA
Sbjct: 274 PRMVMEYWTGWFDSWGGPHNILDSSEVLKTVSAILDAGSSINLYMFHGGTNFGFINGAMH 333
Query: 189 -TPYQPQPTSYDYDAPLSEAGDLTEKYFALRDVIQKFKKVPEGLIPPSTPKFAYGKVALK 365
Y+ TSYDYDA L+EAGD T KYF LRD VP P PK AY V
Sbjct: 334 FHEYKSDVTSYDYDAVLTEAGDYTAKYFKLRDFFGSLSGVPLPPQPSLLPKIAYEPVRPN 393
Query: 366 KLKTVVEALDILCPSGPIKSFYPLTFIQVK------QYFGFVLYRTTLPKDCKDPTHLSS 527
++ +AL + P+ S P+ + Q FG+ LY TT+ S
Sbjct: 394 LYLSLWDALQHM--EEPVSSEKPVNMENLPVNDGNGQSFGYTLYETTIAS--------SG 443
Query: 528 PFNG-VHDRAYVSVDGVPQGVLE---RNIVITLNITGKAGATLDLLVENMGRVNYGNSIN 695
+G V DR V V+ V G L+ + IVI L + L +LVEN GRVNYG++I+
Sbjct: 444 VLSGLVRDRGQVFVNTVSVGFLDYERKKIVIPL---VQGYTRLRILVENRGRVNYGDNID 500
Query: 696 D-FKGLISNLTLGSSILTDWQIFPMDTEDAVRRYLGAWHGYGGKGHHEAHTHSPSEYTLP 872
D KGLI N+ L + L ++I+ +D + + + + P T P
Sbjct: 501 DQRKGLIGNIYLNDAPLKKFRIYSLDMRKSFFQRFSV----------DKWSPIPEAPTFP 550
Query: 873 AFYVANFSIPSEIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPARGPQKTLFVPQHILV 1052
AF++ SI P DTF++ GW KG V+ING NLGRYW GPQ+TL++P L
Sbjct: 551 AFFLGALSISLS----PFDTFMKLEGWEKGVVFINGQNLGRYWNI-GPQETLYLPGAWLD 605
Query: 1053 TSAPNTIIVLELEHAPCGDKEPCTVEFVDKPLIGATE 1163
I+ E P ++F + P +G ++
Sbjct: 606 QGINQVIVFEERMAGP-------AIQFTETPHLGRSQ 635
>ref|XP_848226.1| PREDICTED: similar to CG3132-PA isoform 1 [Canis familiaris].
Length = 636
Score = 193 bits (491), Expect = 3e-49
Identities = 140/397 (35%), Positives = 197/397 (49%), Gaps = 13/397 (3%)
Frame = +3
Query: 12 PLINSEFYTGWLDHWGQPHSTVKTQVVASFLHDILALGANVNMYMFIGGTNFAYWNGAN- 188
P + E++TGW D WG PH+ + + V + IL G+++N+YMF GGTNF + NGA
Sbjct: 272 PRMVMEYWTGWFDSWGGPHNILDSSEVLKTVSAILDAGSSINLYMFHGGTNFGFINGAMH 331
Query: 189 -TPYQPQPTSYDYDAPLSEAGDLTEKYFALRDVIQKFKKVPEGLIPPSTPKFAYGKVALK 365
Y+ TSYDYDA L+EAGD T KYF LRD VP P PK AY V
Sbjct: 332 FHEYKSDVTSYDYDAVLTEAGDYTAKYFKLRDFFGSLSGVPLPPQPSLLPKIAYEPVRPN 391
Query: 366 KLKTVVEALDILCPSGPIKSFYPLTFIQVK------QYFGFVLYRTTLPKDCKDPTHLSS 527
++ +AL + P+ S P+ + Q FG+ LY TT+ S
Sbjct: 392 LYLSLWDALQHM--EEPVSSEKPVNMENLPVNDGNGQSFGYTLYETTIAS--------SG 441
Query: 528 PFNG-VHDRAYVSVDGVPQGVLE---RNIVITLNITGKAGATLDLLVENMGRVNYGNSIN 695
+G V DR V V+ V G L+ + IVI L + L +LVEN GRVNYG++I+
Sbjct: 442 VLSGLVRDRGQVFVNTVSVGFLDYERKKIVIPL---VQGYTRLRILVENRGRVNYGDNID 498
Query: 696 D-FKGLISNLTLGSSILTDWQIFPMDTEDAVRRYLGAWHGYGGKGHHEAHTHSPSEYTLP 872
D KGLI N+ L + L ++I+ +D + + + + P T P
Sbjct: 499 DQRKGLIGNIYLNDAPLKKFRIYSLDMRKSFFQRFSV----------DKWSPIPEAPTFP 548
Query: 873 AFYVANFSIPSEIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPARGPQKTLFVPQHILV 1052
AF++ SI P DTF++ GW KG V+ING NLGRYW GPQ+TL++P L
Sbjct: 549 AFFLGALSISLS----PFDTFMKLEGWEKGVVFINGQNLGRYWNI-GPQETLYLPGAWLD 603
Query: 1053 TSAPNTIIVLELEHAPCGDKEPCTVEFVDKPLIGATE 1163
I+ E P ++F + P +G ++
Sbjct: 604 QGINQVIVFEERMAGP-------AIQFTETPHLGRSQ 633
>ref|XP_546385.2| PREDICTED: similar to T19B10.3 [Canis familiaris].
Length = 908
Score = 155 bits (393), Expect = 8e-38
Identities = 125/391 (31%), Positives = 178/391 (45%), Gaps = 11/391 (2%)
Frame = +3
Query: 12 PLINSEFYTGWLDHWGQPHSTVKTQVVASFLHDILALGANVNMYMFIGGTNFAYWNGANT 191
P++ EF+ GW D WG H + V + +A + N+YMF GGTNF + NGA
Sbjct: 551 PIMVMEFWVGWFDTWGSEHKVKNPKDVEETVTKFIASEISFNVYMFHGGTNFGFMNGATD 610
Query: 192 --PYQPQPTSYDYDAPLSEAGDLTEKYFALRDVIQKFKKVPEGLIPPSTPKFAYGKVALK 365
++ TSYDYDA L+EAGD TEKYF LR + +P +P TPK Y V
Sbjct: 611 FGIHRGVVTSYDYDAVLTEAGDYTEKYFKLRRLFGSVSAIPLPPLPELTPKAEYPSVKPS 670
Query: 366 KLKTVVEALDILCPSGPIKSFYPLTFIQVK------QYFGFVLYRTTLPKDCKDPTHLSS 527
+ + L L + P+ S P+ + Q +GFVLY T++ C S
Sbjct: 671 LYLPLWDVLQYL--NEPVMSNTPVNMENLPINGGNGQSYGFVLYETSI---CSG----GS 721
Query: 528 PFNGVHDRAYVSVDGVPQGVLERNIVITLNITGKAGATLDLLVENMGRVNYGNSIND-FK 704
VHD A V ++ + G L + T L +LVEN GRVN+ I D K
Sbjct: 722 LRADVHDTAQVFLNEINIGHLHDHAKTLTVPTMTRCQLLRILVENQGRVNFSWKIQDQRK 781
Query: 705 GLISNLTLGSSILTDWQIFPMD-TEDAVRRYLGA-WHGYGGKGHHEAHTHSPSEYTLPAF 878
GL ++T+ + L + I+ ++ T R A W P PAF
Sbjct: 782 GLTGSVTINNMPLQGFAIYSLEMTMSFFERLRSATWRPV------------PKACLGPAF 829
Query: 879 YVANFSIPSEIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPARGPQKTLFVPQHILVTS 1058
Y+ + S P+DTF++ W G +ING NLGRY GPQ TL++P L
Sbjct: 830 YLGTLKVDSS----PKDTFLRLRTWNSGFAFINGHNLGRY-SIMGPQGTLYLPGAWL--- 881
Query: 1059 APNTIIVLELEHAPCGDKEPCTVEFVDKPLI 1151
P ++ E CG ++ D+P++
Sbjct: 882 HPEDNEIILFEKRKCGS----YIQTTDEPVL 908
>ref|XP_849131.1| PREDICTED: similar to beta-galactosidase-like protein [Canis
familiaris].
Length = 938
Score = 143 bits (361), Expect = 4e-34
Identities = 118/374 (31%), Positives = 179/374 (47%), Gaps = 14/374 (3%)
Frame = +3
Query: 6 RGPLINSEFYTGWLDHWGQPHSTVKTQVVASFLHDILALGANVNMYMFIGGTNFAYWNGA 185
R P++ + LD WG + ++ + ++ ++N YMF GGTNF + G+
Sbjct: 568 RSPILMMVYTARSLDGWGTAPHFADSHMLKKEVREMFNASFSLNFYMFHGGTNFGFMGGS 627
Query: 186 NT--PYQPQPTSYDYDAPLSEAGDLTEKYFALRDVIQKFKKVPEGLIPPSTPKFAYGKVA 359
+ Y P TSYDY A L+E G+ T +YF+ +D S PK Y V
Sbjct: 628 ASLDNYLPMITSYDYGALLTENGEYTPEYFSYQDFFS--------FSLDSIPKATYKSVI 679
Query: 360 LKKLKTVVEALDILCPSGPIKSFYPLTFIQVK------QYFGFVLYRTTLPKDCKDPTHL 521
++ + + L PI S P+ ++ Q G+VLY T + L
Sbjct: 680 TPYYISLWDVMPYL--EEPISSVKPICMEKLSVNQGSGQSSGYVLYETMIISG-----GL 732
Query: 522 SSPFNGVHDRAYVSVDGVPQGVLERN---IVITLNITGKAGATLDLLVENMGRVNYGNSI 692
+ + DR V VD + G+L+ + + I + K TL +LVEN GR+ YG +I
Sbjct: 733 LTTKGHLQDRGQVFVDDIYIGILDHSTNHLTIPTKMVYKNNPTLRILVENQGRLAYGQNI 792
Query: 693 N-DFKGLISNLTLGSSILTDWQIFPMDTEDA-VRRYL-GAWHGYGGKGHHEAHTHSPSEY 863
N + KGLI ++ L +S L ++I+ +D + +RR L W K H+
Sbjct: 793 NKERKGLIGDIYLNNSPLRKFKIYSLDMKTKFLRRDLPNIWKPVVFK--HQG-------- 842
Query: 864 TLPAFYVANFSIPSEIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPARGPQKTLFVPQH 1043
PAF++ + + P+DTFI+ GWTKG ++ING NLGRYW GPQ+TL++P
Sbjct: 843 --PAFFLGIL----RMGNYPRDTFIKMEGWTKGVIFINGQNLGRYWNI-GPQETLYLPGP 895
Query: 1044 ILVTSAPNTIIVLE 1085
L N IIV E
Sbjct: 896 WL-RPGSNEIIVFE 908
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 69,942,015
Number of extensions: 2070895
Number of successful extensions: 6506
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 6475
Number of HSP's successfully gapped: 9
Length of query: 515
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 408
Effective length of database: 15,307,552
Effective search space: 6245481216
Effective search space used: 6245481216
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DCI01_0022_F02
(1547 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001073279.1| beta-galactosidase isoform b [Homo sapiens]. 667 0.0
Alignment gi|NP_000395.2| beta-galactosidase isoform a preproprotein [Hom... 667 0.0
Alignment gi|NP_001129074.1| beta-galactosidase isoform c preproprotein [... 667 0.0
Alignment gi|NP_078782.3| beta-galactosidase-1-like protein precursor [Ho... 380 e-105
Alignment gi|NP_612351.2| beta-galactosidase-1-like protein 2 precursor [... 203 4e-52
Alignment gi|NP_001073876.2| beta-galactosidase-1-like protein 3 [Homo sa... 156 6e-38
>ref|NP_001073279.1| beta-galactosidase isoform b [Homo sapiens].
Length = 647
Score = 667 bits (1720), Expect = 0.0
Identities = 323/414 (78%), Positives = 356/414 (85%), Gaps = 14/414 (3%)
Frame = +3
Query: 3 PRGPLINSEFYTGWLDHWGQPHSTVKTQVVASFLHDILALGANVNMYMFIGGTNFAYWNG 182
P+GPLINSEFYTGWLDHWGQPHST+KT+ VAS L+DILA GA+VN+YMFIGGTNFAYWNG
Sbjct: 230 PKGPLINSEFYTGWLDHWGQPHSTIKTEAVASSLYDILARGASVNLYMFIGGTNFAYWNG 289
Query: 183 ANTPYQPQPTSYDYDAPLSEAGDLTEKYFALRDVIQKFKKVPEGLIPPSTPKFAYGKVAL 362
AN+PY QPTSYDYDAPLSEAGDLTEKYFALR++IQKF+KVPEG IPPSTPKFAYGKV L
Sbjct: 290 ANSPYAAQPTSYDYDAPLSEAGDLTEKYFALRNIIQKFEKVPEGPIPPSTPKFAYGKVTL 349
Query: 363 KKLKTVVEALDILCPSGPIKSFYPLTFIQVKQYFGFVLYRTTLPKDCKDPTHLSSPFNGV 542
+KLKTV ALDILCPSGPIKS YPLTFIQVKQ++GFVLYRTTLP+DC +P LSSP NGV
Sbjct: 350 EKLKTVGAALDILCPSGPIKSLYPLTFIQVKQHYGFVLYRTTLPQDCSNPAPLSSPLNGV 409
Query: 543 HDRAYVSVDGVPQGVLERNIVITLNITGKAGATLDLLVENMGRVNYGNSINDFKGLISNL 722
HDRAYV+VDG+PQGVLERN VITLNITGKAGATLDLLVENMGRVNYG INDFKGL+SNL
Sbjct: 410 HDRAYVAVDGIPQGVLERNNVITLNITGKAGATLDLLVENMGRVNYGAYINDFKGLVSNL 469
Query: 723 TLGSSILTDWQIFPMDTEDAVRRYLGAWHGYGGKGHH-EAHTHSPSEYTLPAFYVANFSI 899
TL S+ILTDW IFP+DTEDAVR +LG W G+ GHH EA H+ S YTLPAFY+ NFSI
Sbjct: 470 TLSSNILTDWTIFPLDTEDAVRSHLGGW-GHRDSGHHDEAWAHNSSNYTLPAFYMGNFSI 528
Query: 900 PSEIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPARGPQKTLFVPQHILVTSAPNTIIV 1079
PS IPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPARGPQ TLFVPQHIL+TSAPNTI V
Sbjct: 529 PSGIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPARGPQLTLFVPQHILMTSAPNTITV 588
Query: 1080 LELEHAPCGDKEP--CTVEFVDKPLIGATETWSH-----------VPQDQNRDS 1202
LELE APC +P C V FVD+P+IG++ T+ H P +N+DS
Sbjct: 589 LELEWAPCSSDDPELCAVTFVDRPVIGSSVTYDHPSKPVEKRLMPPPPQKNKDS 642
>ref|NP_000395.2| beta-galactosidase isoform a preproprotein [Homo sapiens].
Length = 677
Score = 667 bits (1720), Expect = 0.0
Identities = 323/414 (78%), Positives = 356/414 (85%), Gaps = 14/414 (3%)
Frame = +3
Query: 3 PRGPLINSEFYTGWLDHWGQPHSTVKTQVVASFLHDILALGANVNMYMFIGGTNFAYWNG 182
P+GPLINSEFYTGWLDHWGQPHST+KT+ VAS L+DILA GA+VN+YMFIGGTNFAYWNG
Sbjct: 260 PKGPLINSEFYTGWLDHWGQPHSTIKTEAVASSLYDILARGASVNLYMFIGGTNFAYWNG 319
Query: 183 ANTPYQPQPTSYDYDAPLSEAGDLTEKYFALRDVIQKFKKVPEGLIPPSTPKFAYGKVAL 362
AN+PY QPTSYDYDAPLSEAGDLTEKYFALR++IQKF+KVPEG IPPSTPKFAYGKV L
Sbjct: 320 ANSPYAAQPTSYDYDAPLSEAGDLTEKYFALRNIIQKFEKVPEGPIPPSTPKFAYGKVTL 379
Query: 363 KKLKTVVEALDILCPSGPIKSFYPLTFIQVKQYFGFVLYRTTLPKDCKDPTHLSSPFNGV 542
+KLKTV ALDILCPSGPIKS YPLTFIQVKQ++GFVLYRTTLP+DC +P LSSP NGV
Sbjct: 380 EKLKTVGAALDILCPSGPIKSLYPLTFIQVKQHYGFVLYRTTLPQDCSNPAPLSSPLNGV 439
Query: 543 HDRAYVSVDGVPQGVLERNIVITLNITGKAGATLDLLVENMGRVNYGNSINDFKGLISNL 722
HDRAYV+VDG+PQGVLERN VITLNITGKAGATLDLLVENMGRVNYG INDFKGL+SNL
Sbjct: 440 HDRAYVAVDGIPQGVLERNNVITLNITGKAGATLDLLVENMGRVNYGAYINDFKGLVSNL 499
Query: 723 TLGSSILTDWQIFPMDTEDAVRRYLGAWHGYGGKGHH-EAHTHSPSEYTLPAFYVANFSI 899
TL S+ILTDW IFP+DTEDAVR +LG W G+ GHH EA H+ S YTLPAFY+ NFSI
Sbjct: 500 TLSSNILTDWTIFPLDTEDAVRSHLGGW-GHRDSGHHDEAWAHNSSNYTLPAFYMGNFSI 558
Query: 900 PSEIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPARGPQKTLFVPQHILVTSAPNTIIV 1079
PS IPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPARGPQ TLFVPQHIL+TSAPNTI V
Sbjct: 559 PSGIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPARGPQLTLFVPQHILMTSAPNTITV 618
Query: 1080 LELEHAPCGDKEP--CTVEFVDKPLIGATETWSH-----------VPQDQNRDS 1202
LELE APC +P C V FVD+P+IG++ T+ H P +N+DS
Sbjct: 619 LELEWAPCSSDDPELCAVTFVDRPVIGSSVTYDHPSKPVEKRLMPPPPQKNKDS 672
>ref|NP_001129074.1| beta-galactosidase isoform c preproprotein [Homo sapiens].
Length = 546
Score = 667 bits (1720), Expect = 0.0
Identities = 323/414 (78%), Positives = 356/414 (85%), Gaps = 14/414 (3%)
Frame = +3
Query: 3 PRGPLINSEFYTGWLDHWGQPHSTVKTQVVASFLHDILALGANVNMYMFIGGTNFAYWNG 182
P+GPLINSEFYTGWLDHWGQPHST+KT+ VAS L+DILA GA+VN+YMFIGGTNFAYWNG
Sbjct: 129 PKGPLINSEFYTGWLDHWGQPHSTIKTEAVASSLYDILARGASVNLYMFIGGTNFAYWNG 188
Query: 183 ANTPYQPQPTSYDYDAPLSEAGDLTEKYFALRDVIQKFKKVPEGLIPPSTPKFAYGKVAL 362
AN+PY QPTSYDYDAPLSEAGDLTEKYFALR++IQKF+KVPEG IPPSTPKFAYGKV L
Sbjct: 189 ANSPYAAQPTSYDYDAPLSEAGDLTEKYFALRNIIQKFEKVPEGPIPPSTPKFAYGKVTL 248
Query: 363 KKLKTVVEALDILCPSGPIKSFYPLTFIQVKQYFGFVLYRTTLPKDCKDPTHLSSPFNGV 542
+KLKTV ALDILCPSGPIKS YPLTFIQVKQ++GFVLYRTTLP+DC +P LSSP NGV
Sbjct: 249 EKLKTVGAALDILCPSGPIKSLYPLTFIQVKQHYGFVLYRTTLPQDCSNPAPLSSPLNGV 308
Query: 543 HDRAYVSVDGVPQGVLERNIVITLNITGKAGATLDLLVENMGRVNYGNSINDFKGLISNL 722
HDRAYV+VDG+PQGVLERN VITLNITGKAGATLDLLVENMGRVNYG INDFKGL+SNL
Sbjct: 309 HDRAYVAVDGIPQGVLERNNVITLNITGKAGATLDLLVENMGRVNYGAYINDFKGLVSNL 368
Query: 723 TLGSSILTDWQIFPMDTEDAVRRYLGAWHGYGGKGHH-EAHTHSPSEYTLPAFYVANFSI 899
TL S+ILTDW IFP+DTEDAVR +LG W G+ GHH EA H+ S YTLPAFY+ NFSI
Sbjct: 369 TLSSNILTDWTIFPLDTEDAVRSHLGGW-GHRDSGHHDEAWAHNSSNYTLPAFYMGNFSI 427
Query: 900 PSEIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPARGPQKTLFVPQHILVTSAPNTIIV 1079
PS IPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPARGPQ TLFVPQHIL+TSAPNTI V
Sbjct: 428 PSGIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPARGPQLTLFVPQHILMTSAPNTITV 487
Query: 1080 LELEHAPCGDKEP--CTVEFVDKPLIGATETWSH-----------VPQDQNRDS 1202
LELE APC +P C V FVD+P+IG++ T+ H P +N+DS
Sbjct: 488 LELEWAPCSSDDPELCAVTFVDRPVIGSSVTYDHPSKPVEKRLMPPPPQKNKDS 541
>ref|NP_078782.3| beta-galactosidase-1-like protein precursor [Homo sapiens].
Length = 654
Score = 380 bits (977), Expect = e-105
Identities = 202/395 (51%), Positives = 258/395 (65%), Gaps = 7/395 (1%)
Frame = +3
Query: 3 PRGPLINSEFYTGWLDHWGQPHSTVKTQVVASFLHDILALGANVNMYMFIGGTNFAYWNG 182
P GPL+NSE+YTGWLD+WGQ HST V L ++L LGA+VNMYMF GGTNF YWNG
Sbjct: 256 PHGPLVNSEYYTGWLDYWGQNHSTRSVSAVTKGLENMLKLGASVNMYMFHGGTNFGYWNG 315
Query: 183 ANTP--YQPQPTSYDYDAPLSEAGDLTEKYFALRDVIQKFKKVPEGLIPPSTPKFAYGKV 356
A+ + P TSYDYDAP+SEAGD T K FALRDVI KF++VP G +PP +PK G V
Sbjct: 316 ADKKGRFLPITTSYDYDAPISEAGDPTPKLFALRDVISKFQEVPLGPLPPPSPKMMLGPV 375
Query: 357 ALKKLKTVVEALDILCPSGPIKSFYPLTFIQVKQYFGFVLYRTTLPKDCKDPTHLSSPFN 536
L + ++ LD+LCP GPI S P+TF VKQ GF+LYRT + +PT P N
Sbjct: 376 TLHLVGHLLAFLDLLCPRGPIHSILPMTFEAVKQDHGFMLYRTYMTHTIFEPTPFWVPNN 435
Query: 537 GVHDRAYVSVDGVPQGVLERNIVITLNITGKAGATLDLLVENMGRVNYGNSINDFKGLIS 716
GVHDRAYV VDGV QGV+ERN+ L +TGK G+ LD+LVENMGR+++G++ +DFKGL+
Sbjct: 436 GVHDRAYVMVDGVFQGVVERNMRDKLFLTGKLGSKLDILVENMGRLSFGSNSSDFKGLLK 495
Query: 717 NLTLGSSILTDWQIFPMDTEDAVRRY----LGAWHGYGGKGHHEAHTHSPSEYTLPAFYV 884
LG +ILT W +FP+ ++ V+ + L W + +PS P FY
Sbjct: 496 PPILGQTILTQWMMFPLKIDNLVKWWFPLQLPKW----------PYPQAPSG---PTFYS 542
Query: 885 ANFSIPSEIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPARGPQKTLFVPQHILV-TSA 1061
F I + DTF+ PGWTKGQVWINGFNLGRYW +GPQ+TL+VP+ +L A
Sbjct: 543 KTFPILGSV----GDTFLYLPGWTKGQVWINGFNLGRYWTKQGPQQTLYVPRFLLFPRGA 598
Query: 1062 PNTIIVLELEHAPCGDKEPCTVEFVDKPLIGATET 1166
N I +LELE P + V+F+DKP++ +T T
Sbjct: 599 LNKITLLELEDVPLQPQ----VQFLDKPILNSTST 629
>ref|NP_612351.2| beta-galactosidase-1-like protein 2 precursor [Homo sapiens].
Length = 636
Score = 203 bits (516), Expect = 4e-52
Identities = 138/367 (37%), Positives = 190/367 (51%), Gaps = 9/367 (2%)
Frame = +3
Query: 12 PLINSEFYTGWLDHWGQPHSTVKTQVVASFLHDILALGANVNMYMFIGGTNFAYWNGAN- 188
P + E++TGW D WG PH+ + + V + I+ G+++N+YMF GGTNF + NGA
Sbjct: 272 PKMVMEYWTGWFDSWGGPHNILDSSEVLKTVSAIVDAGSSINLYMFHGGTNFGFMNGAMH 331
Query: 189 -TPYQPQPTSYDYDAPLSEAGDLTEKYFALRDVIQKFKKVPEGLIPPSTPKFAYGKVALK 365
Y+ TSYDYDA L+EAGD T KY LRD +P P PK Y +
Sbjct: 332 FHDYKSDVTSYDYDAVLTEAGDYTAKYMKLRDFFGSISGIPLPPPPDLLPKMPYEPLTPV 391
Query: 366 KLKTVVEALDILCPSGPIKSFYPLTFIQVK------QYFGFVLYRTTLPKDCKDPTHLSS 527
++ +AL L PIKS P+ + Q FG++LY T++ H
Sbjct: 392 LYLSLWDALKYL--GEPIKSEKPINMENLPVNGGNGQSFGYILYETSITSSGILSGH--- 446
Query: 528 PFNGVHDRAYVSVDGVPQGVLERNIVITLNITGKAGATLDLLVENMGRVNYGNSIND-FK 704
VHDR V V+ V G L+ + L +LVEN GRVNYG +I+D K
Sbjct: 447 ----VHDRGQVFVNTVSIGFLDYKTTKIAVPLIQGYTVLRILVENRGRVNYGENIDDQRK 502
Query: 705 GLISNLTLGSSILTDWQIFPMDTEDAVRRYLGAWHGYGGKGHHEAHTHSPSEYTLPAFYV 884
GLI NL L S L +++I+ +D + + + G + + P TLPAF++
Sbjct: 503 GLIGNLYLNDSPLKNFRIYSLDMKKSFFQRFGL----------DKWSSLPETPTLPAFFL 552
Query: 885 ANFSIPSEIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPARGPQKTLFVPQHILVTSAP 1064
+ SI S P DTF++ GW KG V+ING NLGRYW GPQKTL++P L +S
Sbjct: 553 GSLSISS----TPCDTFLKLEGWEKGVVFINGQNLGRYWNI-GPQKTLYLPGPWL-SSGI 606
Query: 1065 NTIIVLE 1085
N +IV E
Sbjct: 607 NQVIVFE 613
>ref|NP_001073876.2| beta-galactosidase-1-like protein 3 [Homo sapiens].
Length = 653
Score = 156 bits (394), Expect = 6e-38
Identities = 117/370 (31%), Positives = 171/370 (46%), Gaps = 12/370 (3%)
Frame = +3
Query: 12 PLINSEFYTGWLDHWGQPHSTVKTQVVASFLHDILALGANVNMYMFIGGTNFAYWNGAN- 188
PL+ E++ GW D WG H + V + + + + N+YMF GGTNF + NGA
Sbjct: 296 PLLIMEYWVGWFDRWGDKHHVKDAKEVEHAVSEFIKYEISFNVYMFHGGTNFGFMNGATY 355
Query: 189 -TPYQPQPTSYDYDAPLSEAGDLTEKYFALRDVIQKFKKVPEGLIPPSTPKFAYGKVALK 365
+ TSYDYDA L+EAGD TEKY L+ + Q P +P PK Y V
Sbjct: 356 FGKHSGIVTSYDYDAVLTEAGDYTEKYLKLQKLFQSVSATPLPRVPKLPPKAVYPPVRPS 415
Query: 366 KLKTVVEALDILCPSGPIKSFYPLTFIQVK------QYFGFVLYRTTLPKDCKDPTHLSS 527
+ +AL L + P++S P+ + Q +G VLY ++ + H
Sbjct: 416 LYLPLWDALSYL--NEPVRSRQPVNMENLPINNGSGQSYGLVLYEKSICSGGRLRAH--- 470
Query: 528 PFNGVHDRAYVSVDGVPQGVLERNIVITLNITGKAGATLDLLVENMGRVNYGNSI-NDFK 704
HD A V +D G+L N + L +LVEN GRVN+ I N+ K
Sbjct: 471 ----AHDVAQVFLDETMIGILNENNKDLHIPELRDCRYLRILVENQGRVNFSWQIQNEQK 526
Query: 705 GLISNLTLGSSILTDWQIFPMDTEDAV--RRYLGAWHGYGGKGHHEAHTHSPSEYTLPAF 878
G+ ++++ +S L + I+ ++ + + R W P + PAF
Sbjct: 527 GITGSVSINNSSLEGFTIYSLEMKMSFFERLRSATWKPV------------PDSHQGPAF 574
Query: 879 YVANFSI-PSEIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPARGPQKTLFVPQHILVT 1055
Y PS P+DTF+ W G V+ING NLGRYW GPQKTL++P + +
Sbjct: 575 YCGTLKAGPS-----PKDTFLSLLNWNYGFVFINGRNLGRYWNI-GPQKTLYLP-GVWLH 627
Query: 1056 SAPNTIIVLE 1085
N +I+ E
Sbjct: 628 PEDNEVILFE 637
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 68,794,610
Number of extensions: 2041236
Number of successful extensions: 6422
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6401
Number of HSP's successfully gapped: 6
Length of query: 515
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 408
Effective length of database: 14,770,016
Effective search space: 6026166528
Effective search space used: 6026166528
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DCI01_0022_F02
(1547 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033882.1| beta-galactosidase precursor [Mus musculus]. 605 e-173
Alignment gi|NP_083286.1| beta-galactosidase-1-like protein precursor [Mu... 379 e-105
Alignment gi|NP_722498.1| beta-galactosidase-1-like protein 2 [Mus muscul... 190 3e-48
Alignment gi|NP_001106794.1| beta-galactosidase-1-like protein 3 [Mus mus... 176 3e-44
Alignment gi|NP_001170980.1| beta-galactosidase-like protein [Mus musculu... 149 4e-36
>ref|NP_033882.1| beta-galactosidase precursor [Mus musculus].
Length = 647
Score = 605 bits (1559), Expect = e-173
Identities = 290/391 (74%), Positives = 332/391 (84%), Gaps = 8/391 (2%)
Frame = +3
Query: 3 PRGPLINSEFYTGWLDHWGQPHSTVKTQVVASFLHDILALGANVNMYMFIGGTNFAYWNG 182
P+GPLINSEFYTGWLDHWG+PHSTVKT+ +A+ L+++LA GANVN+YMFIGGTNFAYWNG
Sbjct: 261 PKGPLINSEFYTGWLDHWGKPHSTVKTKTLATSLYNLLARGANVNLYMFIGGTNFAYWNG 320
Query: 183 ANTPYQPQPTSYDYDAPLSEAGDLTEKYFALRDVIQKFKKVPEGLIPPSTPKFAYGKVAL 362
ANTPY+PQPTSYDYDAPLSEAGDLT+KYFALR+VIQ FK+VPEG IPPSTPKFAYGKVAL
Sbjct: 321 ANTPYEPQPTSYDYDAPLSEAGDLTKKYFALREVIQMFKEVPEGPIPPSTPKFAYGKVAL 380
Query: 363 KKLKTVVEALDILCPSGPIKSFYPLTFIQVKQYFGFVLYRTTLPKDCKDPTHL-SSPFNG 539
+K KTV EAL ILCP+GP+KS YPLTF QVKQYFG+VLYRTTLP+DC +P + SSPFNG
Sbjct: 381 RKFKTVAEALGILCPNGPVKSLYPLTFTQVKQYFGYVLYRTTLPQDCSNPKPIFSSPFNG 440
Query: 540 VHDRAYVSVDGVPQGVLERNIVITLNITGKAGATLDLLVENMGRVNYGNSINDFKGLISN 719
V DRAYVSVDGVPQG+L+RN++ LNI GKAGATLD+LVENMGRVNYG INDFKGLISN
Sbjct: 441 VRDRAYVSVDGVPQGILDRNLMTALNIRGKAGATLDILVENMGRVNYGRFINDFKGLISN 500
Query: 720 LTLGSSILTDWQIFPMDTEDAVRRYLGAWHGYGGKGHHEAH-----THSPSEYTLPAFYV 884
+T+ S++LT+W +FP++TE VR +L +G + E H T + S+ LP FYV
Sbjct: 501 MTINSTVLTNWTVFPLNTEAMVRNHL-----WGREASDEGHLDGRSTSNSSDLILPTFYV 555
Query: 885 ANFSIPSEIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPARGPQKTLFVPQHILVTSAP 1064
NFSIPS IPDLPQDTFIQFPGW+KGQVWINGFNLGRYWP GPQKTLFVP++IL TSAP
Sbjct: 556 GNFSIPSGIPDLPQDTFIQFPGWSKGQVWINGFNLGRYWPTMGPQKTLFVPRNILTTSAP 615
Query: 1065 NTIIVLELEHAPC--GDKEPCTVEFVDKPLI 1151
N I VLELE APC G E CTVEFVD P+I
Sbjct: 616 NNITVLELEFAPCSEGTPELCTVEFVDTPVI 646
>ref|NP_083286.1| beta-galactosidase-1-like protein precursor [Mus musculus].
Length = 646
Score = 379 bits (974), Expect = e-105
Identities = 194/393 (49%), Positives = 256/393 (65%), Gaps = 2/393 (0%)
Frame = +3
Query: 3 PRGPLINSEFYTGWLDHWGQPHSTVKTQVVASFLHDILALGANVNMYMFIGGTNFAYWNG 182
P GPL+NSE+YTGWLD+WGQ HST + VA L +L LGA+VNMYMF GGTNF YWNG
Sbjct: 252 PHGPLVNSEYYTGWLDYWGQNHSTRSSPAVAQGLEKMLKLGASVNMYMFHGGTNFGYWNG 311
Query: 183 ANTP--YQPQPTSYDYDAPLSEAGDLTEKYFALRDVIQKFKKVPEGLIPPSTPKFAYGKV 356
A+ + P TSYDYDAP+SEAGD T K FA+R+VI KF+++P G +PP +PK +G +
Sbjct: 312 ADEKGRFLPITTSYDYDAPISEAGDPTPKLFAIRNVISKFQEIPLGPLPPPSPKMKFGPL 371
Query: 357 ALKKLKTVVEALDILCPSGPIKSFYPLTFIQVKQYFGFVLYRTTLPKDCKDPTHLSSPFN 536
+ ++ LD LCP GPI S PLTF VK GF+LYRT L +PT P N
Sbjct: 372 TMSLDGNLLSFLDFLCPQGPIHSVLPLTFEAVKLDHGFMLYRTYLTSPVLEPTPFWVPNN 431
Query: 537 GVHDRAYVSVDGVPQGVLERNIVITLNITGKAGATLDLLVENMGRVNYGNSINDFKGLIS 716
G+HDRAYV VDGV +GVLER++ L +TG G LD+L+ENMGR+++G++ +DFKGL+
Sbjct: 432 GIHDRAYVMVDGVLKGVLERSLKQELYLTGTVGTRLDILLENMGRLSFGSNHSDFKGLLE 491
Query: 717 NLTLGSSILTDWQIFPMDTEDAVRRYLGAWHGYGGKGHHEAHTHSPSEYTLPAFYVANFS 896
LG +ILT+W +FP+ + V+ + P ++PAFY A F
Sbjct: 492 APLLGQTILTEWMMFPLKVDKLVKWWFPL---------QLMKRALPQASSVPAFYSAKFP 542
Query: 897 IPSEIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPARGPQKTLFVPQHILVTSAPNTII 1076
+ L DTF+ PGWTKGQVWINGFNLGRYW RGPQ+TL+VP+ +L + N I
Sbjct: 543 VFG----LLGDTFLYLPGWTKGQVWINGFNLGRYWTMRGPQQTLYVPRLLLFGRSINKIT 598
Query: 1077 VLELEHAPCGDKEPCTVEFVDKPLIGATETWSH 1175
+LELE+ P + V+F+DKP++ +T W +
Sbjct: 599 LLELENVPHNPQ----VQFLDKPILNSTLHWGY 627
>ref|NP_722498.1| beta-galactosidase-1-like protein 2 [Mus musculus].
Length = 652
Score = 190 bits (482), Expect = 3e-48
Identities = 130/371 (35%), Positives = 197/371 (53%), Gaps = 13/371 (3%)
Frame = +3
Query: 12 PLINSEFYTGWLDHWGQPHSTVKTQVVASFLHDILALGANVNMYMFIGGTNFAYWNGAN- 188
P + E++TGW D WG H+ + + V + I+ G+++N+YMF GGTNF + NGA
Sbjct: 288 PKMVMEYWTGWFDSWGGSHNILDSSEVLQTVSAIIKDGSSINLYMFHGGTNFGFINGAMH 347
Query: 189 -TPYQPQPTSYDYDAPLSEAGDLTEKYFALRDVIQKFKKVPEGLIPPSTPKFAYGKVALK 365
Y+ TSYDYDA L+EAGD T KY LR++ +P P T K Y ++
Sbjct: 348 FNDYKADVTSYDYDAILTEAGDYTAKYTKLRELFGTVSGIPPPPPPELTAKMVYEPMSPA 407
Query: 366 KLKTVVEALDILCPSGPIKSFYPLTFIQVK------QYFGFVLYRTTLPKDCKDPTHLSS 527
++ +A+ + P+ S P+ + Q FG+VLY TT+ S
Sbjct: 408 LYLSLWDAIQYM--DKPVTSETPINMENLPVNNGNGQAFGYVLYETTI--------FSSG 457
Query: 528 PFNG-VHDRAYVSVDGVPQGVLE-RNIVITLNITGKAGATLDLLVENMGRVNYGNSI-ND 698
+G V DR V ++ V G L+ + IT+ +T + L +LVEN GRVNYGN+I +
Sbjct: 458 VLSGLVRDRGQVFLNRVSIGFLDYKTTKITIPLT-QGYTILRILVENRGRVNYGNNIDSQ 516
Query: 699 FKGLISNLTLGSSILTDWQIFPMD-TEDAVRRY-LGAWHGYGGKGHHEAHTHSPSEYTLP 872
KGLI NL L + L +++I+ +D T+ ++R+ + W + P E T P
Sbjct: 517 RKGLIGNLYLNNKALKNFKIYSLDMTKQFLQRFDMDNW------------SVIPKELTFP 564
Query: 873 AFYVANFSIPSEIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPARGPQKTLFVPQHILV 1052
AF++ S+ P DTF++ GW KG V++NG NLGRYW GPQ+TL++P + +
Sbjct: 565 AFFLGALSVGI----YPSDTFLKLEGWVKGVVFVNGHNLGRYWNV-GPQETLYLP-GVWL 618
Query: 1053 TSAPNTIIVLE 1085
N +I+ E
Sbjct: 619 DKGINKVIIFE 629
>ref|NP_001106794.1| beta-galactosidase-1-like protein 3 [Mus musculus].
Length = 662
Score = 176 bits (447), Expect = 3e-44
Identities = 127/369 (34%), Positives = 180/369 (48%), Gaps = 11/369 (2%)
Frame = +3
Query: 12 PLINSEFYTGWLDHWGQPHSTVKTQVVASFLHDILALGANVNMYMFIGGTNFAYWNGA-- 185
P++ E++TGW D WG H + + ++ ++ G + NMYMF GGTNF + NG
Sbjct: 285 PIMIMEYWTGWYDSWGSKHIEKSAEEIRHTVYKFISYGLSFNMYMFHGGTNFGFINGGRY 344
Query: 186 NTPYQPQPTSYDYDAPLSEAGDLTEKYFALRDVIQKFKKVPEGLIPPSTPKFAYGKVALK 365
+ TSYDYDA LSEAGD TEKYF LR + P +PP PK Y V L
Sbjct: 345 ENHHISVVTSYDYDAVLSEAGDYTEKYFKLRKLFASGSARPLPPLPPLIPKAIYPSVNLS 404
Query: 366 KLKTVVEALDILCPSGPIKSFYPLTFIQVK------QYFGFVLYRTTLPKDCKDPTHLSS 527
+ + L L + P+ P+T + Q FG VLY T++ C S
Sbjct: 405 FYLPLFDILPYL--NQPVMLHTPVTMENLPINNGSGQPFGLVLYETSI---CSG----GS 455
Query: 528 PFNGVHDRAYVSVDGVPQGVLERNIVITLNITGKAGATLDLLVENMGRVNYGNSI-NDFK 704
F VHD A V ++ G+L+ N + + L +LVEN GR+NY I ++ K
Sbjct: 456 LFASVHDSAQVFLNDQSIGILDENHEVLQIPKIQGCQLLRILVENQGRINYSWRIQSEQK 515
Query: 705 GLISNLTLGSSILTDWQIFPMDTEDAVRRYL--GAWHGYGGKGHHEAHTHSPSEYTLPAF 878
GL +++ +LT++ I+ +D + + + L +W +P Y PAF
Sbjct: 516 GLKEVVSIDGLLLTNFTIYSLDMKMSFFKRLRSASWR------------LAPKTYNGPAF 563
Query: 879 YVANFSIPSEIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPARGPQKTLFVPQHILVTS 1058
Y + S P DTF+ P W G V+ING NLGRYW GPQ+TL++P L
Sbjct: 564 YWGILNAGSS----PTDTFLHLPNWHYGFVFINGRNLGRYWDI-GPQRTLYLPGPWL-HP 617
Query: 1059 APNTIIVLE 1085
N +IV E
Sbjct: 618 EDNEVIVFE 626
>ref|NP_001170980.1| beta-galactosidase-like protein [Mus musculus].
Length = 638
Score = 149 bits (377), Expect = 4e-36
Identities = 123/399 (30%), Positives = 190/399 (47%), Gaps = 16/399 (4%)
Frame = +3
Query: 6 RGPLINSEFYTGWLDHWGQPHSTVKTQVVASFLHDILALGANVNMYMFIGGTNFAYWNGA 185
+ P++ + T D WG H T Q++ +H++ LG ++N YMF GGTNF GA
Sbjct: 270 KSPILMMVYTTKSFDTWGTLHQTGDAQMLLKDVHEMFHLGFSLNFYMFQGGTNFGLIGGA 329
Query: 186 NTP--YQPQPTSYDYDAPLSEAGDLTEKYFALRDVIQKFKKVPEGLI--PPSTPKFAYGK 353
+ Y+P TSYDY+A +SE G+ T +Y + L P +T FAY
Sbjct: 330 QSSEGYKPVVTSYDYNALVSEGGEYTVQYREFQRFFHSVTVADSHLTVQPKTTQMFAYQP 389
Query: 354 VALKKLKTVVEALDILCPSGPIKSFYPLTFIQVK------QYFGFVLYRTTLPKDCKDPT 515
V L T+ E L L + KS PL+ Q++ Q FG++LY T +
Sbjct: 390 VTLLYFMTLWEFLPNLVKT--TKSSKPLSMEQLRVNERSGQSFGYILYETVIFSG----- 442
Query: 516 HLSSPFNGVHDRA-YVSVDGVPQGVLER--NIVITLNITGKAGATLDLLVENMGRVNYGN 686
L + + DR V +D + G+L++ + ++ K L +LVEN GR+ G
Sbjct: 443 GLITSRGHIRDRGQVVFLDNIYIGLLDQSNSELLLYKDVSKKSQILRILVENQGRLTSGQ 502
Query: 687 SIN-DFKGLISNLTLGSSILTDWQIFPMDTEDAV--RRYLGAWHGYGGKGHHEAHTHSPS 857
IN + KGL ++ L S L ++I+ ++ + R + +W S
Sbjct: 503 DINKERKGLTGDIYLDKSPLRPFKIYSLEMNNIFIQREFPNSWQ------------RVTS 550
Query: 858 EYTLPAFYVANFSIPSEIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPARGPQKTLFVP 1037
+ PAF+++ + D PQDTF++ GW KG + ING +LGRYW GPQ+T+FVP
Sbjct: 551 QVQGPAFFLSYL----KAGDPPQDTFMKIQGWGKGVISINGRSLGRYWNI-GPQETVFVP 605
Query: 1038 QHILVTSAPNTIIVLELEHAPCGDKEPCTVEFVDKPLIG 1154
L I+ EL+ GD++ + F K +G
Sbjct: 606 GSWLQPGVNKIIMFEELK----GDEK---IHFSTKAQLG 637
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 58,348,916
Number of extensions: 1719735
Number of successful extensions: 5366
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5345
Number of HSP's successfully gapped: 5
Length of query: 515
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 409
Effective length of database: 12,433,743
Effective search space: 5085400887
Effective search space used: 5085400887
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DCI01_0022_F02
(1547 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361222.1| PREDICTED: beta-galactosidase-like, partial ... 565 e-161
Alignment gi|XP_001928410.1| PREDICTED: beta-galactosidase-1-like protein... 371 e-103
Alignment gi|XP_003130137.1| PREDICTED: beta-galactosidase-1-like protein... 186 3e-47
Alignment gi|XP_003130139.2| PREDICTED: beta-galactosidase-1-like protein... 163 2e-40
>ref|XP_003361222.1| PREDICTED: beta-galactosidase-like, partial [Sus scrofa].
Length = 332
Score = 565 bits (1457), Expect = e-161
Identities = 284/327 (86%), Positives = 292/327 (89%), Gaps = 13/327 (3%)
Frame = +3
Query: 18 INSEFYTGWLDHWGQPHSTVKTQVVASFLHDILALGANVNMYMFIGGTNFAYWNGANTPY 197
INSEFYTGWLDHWGQPHSTVKTQVVASFLHDILALGANVNMYMFIGGTNFAYWNGANTP+
Sbjct: 1 INSEFYTGWLDHWGQPHSTVKTQVVASFLHDILALGANVNMYMFIGGTNFAYWNGANTPH 60
Query: 198 QPQPTSYDYDAPLSEAGDLTEKYFALRDVIQKFKKVPEGLIPPSTPKFAYGKVALKKLKT 377
QPQPTSYDYDAPLSEAGDLTEKYFALRDVIQKFKKVPEGLIPPSTPKFAYGKVALKKLKT
Sbjct: 61 QPQPTSYDYDAPLSEAGDLTEKYFALRDVIQKFKKVPEGLIPPSTPKFAYGKVALKKLKT 120
Query: 378 VVEALDILCPSGPIKSFYPLTFIQVKQYFGFVLYRTTLP-KDCKDPTHLSSPFNGVH-DR 551
VVEALDILCPSGPIKSFYPLTFIQVKQ +++ LP K P+ SP NG+H
Sbjct: 121 VVEALDILCPSGPIKSFYPLTFIQVKQR---AVHKMPLPQKPSWSPSPGPSPLNGLHVIH 177
Query: 552 AYVSVDG-----------VPQGVLERNIVITLNITGKAGATLDLLVENMGRVNYGNSIND 698
A+ G VPQGVLERNIVITLNITGKAGATLDLLVENMGRVNYGNSIND
Sbjct: 178 AFFPPGGQVNSHLALNPQVPQGVLERNIVITLNITGKAGATLDLLVENMGRVNYGNSIND 237
Query: 699 FKGLISNLTLGSSILTDWQIFPMDTEDAVRRYLGAWHGYGGKGHHEAHTHSPSEYTLPAF 878
FKGLISNLTLGSSILTDWQIFPMDTEDAVR +LGAWHGYGGKGHHEAHTHSPSEYTLPAF
Sbjct: 238 FKGLISNLTLGSSILTDWQIFPMDTEDAVRGHLGAWHGYGGKGHHEAHTHSPSEYTLPAF 297
Query: 879 YVANFSIPSEIPDLPQDTFIQFPGWTK 959
YVANFSIPSEIPDLPQDTFIQFPGWTK
Sbjct: 298 YVANFSIPSEIPDLPQDTFIQFPGWTK 324
>ref|XP_001928410.1| PREDICTED: beta-galactosidase-1-like protein [Sus scrofa].
Length = 652
Score = 371 bits (952), Expect = e-103
Identities = 200/408 (49%), Positives = 262/408 (64%), Gaps = 6/408 (1%)
Frame = +3
Query: 3 PRGPLINSEFYTGWLDHWGQPHSTVKTQVVASFLHDILALGANVNMYMFIGGTNFAYWNG 182
P GPL+NSE+YTGWLD+WGQ HST V L +L LGA+VNMYMF GGTNF YWNG
Sbjct: 256 PHGPLVNSEYYTGWLDYWGQNHSTRSVPAVTKGLEKMLELGASVNMYMFHGGTNFGYWNG 315
Query: 183 ANTP--YQPQPTSYDYDAPLSEAGDLTEKYFALRDVIQKFKKVPEGLIPPSTPKFAYGKV 356
A+ + P TSYDYDAP+SEAGD T K+ A+R+VI KF+++P G +PP +PK G +
Sbjct: 316 ADEKGRFLPITTSYDYDAPISEAGDXTPKFXAIRNVISKFQEIPLGPLPPPSPKMMLGPL 375
Query: 357 ALKKLKTVVEALDILCPSGPIKSFYPLTFIQVKQYFGFVLYRTTLPKDCKDPTHLSSPFN 536
L+ ++ LD LCP GPI S P+TF V Q GF+LYRT L +PT P N
Sbjct: 376 TLQLDGDLLAFLDFLCPQGPIHSILPMTFEAVNQDRGFMLYRTHLTHTVSEPTQFWVPNN 435
Query: 537 GVHDRAYVSVDGVPQGVLERNIVITLNITGKAGATLDLLVENMGRVNYGNSINDFKGLIS 716
GVHDRAYV VDGV QGVLERN+ L + GK GA LD+L+ENMGR+++G++ +DFKGL+
Sbjct: 436 GVHDRAYVMVDGVFQGVLERNMEHNLFLMGKRGAKLDVLLENMGRLSFGSNSSDFKGLLE 495
Query: 717 NLTLGSSILTDWQIFPMDTEDAVRRYLGAWHGYGGKGHHEAHTHSPSEYTLPAFYVANFS 896
LG +ILT W +FP+ ++ V+ + T P + P FY F
Sbjct: 496 PPILGQTILTPWLMFPLKVDNLVKWWFPI---------QLLKTPHPQIPSGPTFYSTTF- 545
Query: 897 IPSEIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPARGPQKTLFVPQHILV-TSAPNTI 1073
+ D DTF+ PGWTKGQVWINGFNLGRYW RGPQ+TL+VP+ +L A N I
Sbjct: 546 ---PVFDSGGDTFLYLPGWTKGQVWINGFNLGRYWTKRGPQQTLYVPRPLLFPRGALNKI 602
Query: 1074 IVLELEHAPCGDKEPCTVEFVDKPLIGAT--ETWSH-VPQDQNRDSKP 1208
VLELE+ P +P ++F+D+P++ +T +T+ + + D DS+P
Sbjct: 603 TVLELENVP---PQP-QIQFLDRPILNSTLHKTYIYSLSTDIQGDSEP 646
>ref|XP_003130137.1| PREDICTED: beta-galactosidase-1-like protein 2 [Sus scrofa].
Length = 635
Score = 186 bits (472), Expect = 3e-47
Identities = 134/393 (34%), Positives = 193/393 (49%), Gaps = 12/393 (3%)
Frame = +3
Query: 12 PLINSEFYTGWLDHWGQPHSTVKTQVVASFLHDILALGANVNMYMFIGGTNFAYWNGAN- 188
P + E++TGW D WG PH + T V + I+ GA++N+YMF GGTNF + NGA
Sbjct: 271 PKMVMEYWTGWFDSWGGPHHILDTSEVLRTVSAIIDAGASINLYMFHGGTNFGFINGAMH 330
Query: 189 -TPYQPQPTSYDYDAPLSEAGDLTEKYFALRDVIQKFKKVPEGLIPPSTPKFAYGKVALK 365
Y TSYDYDA L+EAGD T KY LR++ L P PK Y V
Sbjct: 331 FQDYMSDVTSYDYDAVLTEAGDYTPKYIRLRELFGSISGASLPLPPDLLPKVRYEPVVPA 390
Query: 366 KLKTVVEALDILCPSGPIKSFYPLTFIQVK------QYFGFVLYRTTLPKDCKDPTHLSS 527
++ +AL + P+ S P+ + Q FG+ LY TT+ + + S
Sbjct: 391 FYLSLWDALPYI--KEPVTSEKPVNMENLPINDGNGQSFGYTLYETTITS-----SGILS 443
Query: 528 PFNGVHDRAYVSVDGVPQGVLE---RNIVITLNITGKAGATLDLLVENMGRVNYGNSI-N 695
V DR V ++ G L+ + I I L + L +LVEN GRVNYG +I N
Sbjct: 444 AL--VRDRGQVFLNTETIGFLDYKTKKIPIPLI---QGFTILRILVENCGRVNYGENIDN 498
Query: 696 DFKGLISNLTLGSSILTDWQIFPMDTEDAVRRYLGAWHGYGGKGHHEAHTHSPSEYTLPA 875
KGLI ++ L + L ++I+ +D + + + A E P TLPA
Sbjct: 499 QRKGLIGDIYLNDTPLKKFKIYSLDMKKSFFQRFTA----------EKWDPVPGVPTLPA 548
Query: 876 FYVANFSIPSEIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPARGPQKTLFVPQHILVT 1055
F++ S+ S P DTF++ GW KG V++NG+NLGRYW GPQ+TL++P L
Sbjct: 549 FFLGALSVTS----FPYDTFVKLEGWEKGVVFVNGYNLGRYWNI-GPQETLYLPGVWLNE 603
Query: 1056 SAPNTIIVLELEHAPCGDKEPCTVEFVDKPLIG 1154
I+ E+ P ++F++ P +G
Sbjct: 604 GINQVIVFEEMMQGP-------VIQFMEMPYLG 629
>ref|XP_003130139.2| PREDICTED: beta-galactosidase-1-like protein 3, partial [Sus scrofa].
Length = 533
Score = 163 bits (413), Expect = 2e-40
Identities = 127/369 (34%), Positives = 173/369 (46%), Gaps = 11/369 (2%)
Frame = +3
Query: 12 PLINSEFYTGWLDHWGQPHSTVKTQVVASFLHDILALGANVNMYMFIGGTNFAYWNGAN- 188
P++ EF+ GW D WG H+ V + + D + L + N+YMF GGTNF + NGA
Sbjct: 175 PILIMEFWVGWFDTWGNKHAVRDAIDVENTIFDFIRLEISFNVYMFHGGTNFGFMNGATY 234
Query: 189 -TPYQPQPTSYDYDAPLSEAGDLTEKYFALRDVIQKFKKVPEGLIPPSTPKFAYGKVALK 365
++ TSYDYDA L+EAGD T K+F LR++ + P +P TPK Y V
Sbjct: 235 FEQHRGVVTSYDYDAVLTEAGDYTPKFFKLRELFKSIFVTPLPALPEPTPKAVYPLVRPS 294
Query: 366 KLKTVVEALDILCPSGPIKSFYPLTFIQVK------QYFGFVLYRTTLPKDCKDPTHLSS 527
+ +AL L + P+ S PL + Q +G VLY+TT+ C
Sbjct: 295 LYLPLWDALQYL--NSPVLSNVPLNMENLPINNGNGQSYGLVLYQTTI---CSG----GQ 345
Query: 528 PFNGVHDRAYVSVDGVPQGVLE--RNIVITLNITGKAGATLDLLVENMGRVNYGNSI-ND 698
D A V ++ G L R V IT L +LVEN GRVN+ I N
Sbjct: 346 LHANAQDMAQVFLNETNLGTLANGRQDVYIPRIT--ECQLLRILVENQGRVNFSWKIQNQ 403
Query: 699 FKGLISNLTLGSSILTDWQIFPMDTEDAVRRYLGAWHGYGGKGHHEAHTHSPSEYTLPAF 878
KGLI +T+ L + I+ ++ + + + L + H H PAF
Sbjct: 404 QKGLIGPVTINDIPLESFTIYSLELKMSFFKRLRSASWKPVPDGHLGH---------PAF 454
Query: 879 YVANFSIPSEIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPARGPQKTLFVPQHILVTS 1058
Y+ S P DTF+ P W G V+ING NLGRYW GPQKTL++P L
Sbjct: 455 YLGTLKAGSS----PMDTFLTLPDWNYGFVFINGRNLGRYWNI-GPQKTLYLPGSWL-QP 508
Query: 1059 APNTIIVLE 1085
N II+ E
Sbjct: 509 EDNEIILFE 517
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 43,583,160
Number of extensions: 1342272
Number of successful extensions: 4119
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4104
Number of HSP's successfully gapped: 4
Length of query: 515
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 412
Effective length of database: 8,779,541
Effective search space: 3617170892
Effective search space used: 3617170892
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DCI01_0022_F02
(1547 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL895559.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 785 0.0
gb|GL893784.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 496 e-137
gb|GL895089.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 236 3e-59
>gb|GL895559.1| Sus scrofa unplaced genomic scaffold chrU_scaffold4111
Length = 57015
Score = 785 bits (396), Expect = 0.0
Identities = 399/400 (99%)
Strand = Plus / Minus
Query: 1117 cgtgcactgtggagttcgtggacaagccgcttattggcgcaaccgagacctggagccatg 1176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49701 cgtgcactgtggagttcgtggacaagccgcttattggcgcaaccgagacctggagccatg 49642
Query: 1177 tccctcaagaccaaaaccgagactcaaagccaggccgcgtgtaatgacgatgactgtgac 1236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49641 tccctcaagaccaaaaccgagactcaaagccaggccgcgtgtaatgacgatgactgtgac 49582
Query: 1237 ccttcggaactgtagccttgcacatacctcgcataaccctcaggatgccagcattcactg 1296
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 49581 ccttcggaactgtagccttgcacatacctcgcataaccctcaggatgccggcattcactg 49522
Query: 1297 aggagttcgattggaaaacagatgagttgttttctcacccaaggatttcctgcagccttg 1356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49521 aggagttcgattggaaaacagatgagttgttttctcacccaaggatttcctgcagccttg 49462
Query: 1357 tggcacctgaggcacccctgtccactgcacagatgtggggtaggatggtggtagcccagc 1416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49461 tggcacctgaggcacccctgtccactgcacagatgtggggtaggatggtggtagcccagc 49402
Query: 1417 aatgcacagaagcctccaaagaattgaaatggaggctttaagggtgtttctaattttcac 1476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49401 aatgcacagaagcctccaaagaattgaaatggaggctttaagggtgtttctaattttcac 49342
Query: 1477 tttggaagaatcatgtctttttattaaataaaatttgtat 1516
||||||||||||||||||||||||||||||||||||||||
Sbjct: 49341 tttggaagaatcatgtctttttattaaataaaatttgtat 49302
Score = 281 bits (142), Expect = 6e-73
Identities = 142/142 (100%)
Strand = Plus / Minus
Query: 958 agggtcaggtgtggataaatggttttaaccttggccgctattggccagctcgaggtcccc 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49943 agggtcaggtgtggataaatggttttaaccttggccgctattggccagctcgaggtcccc 49884
Query: 1018 agaagaccttatttgtgccgcagcacatcctggtgacctcggctccaaacaccatcatcg 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49883 agaagaccttatttgtgccgcagcacatcctggtgacctcggctccaaacaccatcatcg 49824
Query: 1078 tgctggagctggagcatgcacc 1099
||||||||||||||||||||||
Sbjct: 49823 tgctggagctggagcatgcacc 49802
>gb|GL893784.1| Sus scrofa unplaced genomic scaffold chrU_scaffold2514
Length = 30851
Score = 496 bits (250), Expect = e-137
Identities = 256/258 (99%)
Strand = Plus / Plus
Query: 703 agggtcttatttctaacctgacccttggttccagtatcctcactgactggcagatcttcc 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25947 agggtcttatttctaacctgacccttggttccagtatcctcactgactggcagatcttcc 26006
Query: 763 cgatggacactgaggatgcagttcgccgctaccttggggcctggcatggctatggtggca 822
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 26007 cgatggacactgaggatgcagttcgcggccaccttggggcctggcatggctatggtggca 26066
Query: 823 agggccaccatgaagcccatacccacagcccatctgagtacacactgccagccttttatg 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26067 agggccaccatgaagcccatacccacagcccatctgagtacacactgccagccttttatg 26126
Query: 883 tggctaacttctctattcccagtgagatcccagacttgccccaggacacctttatccagt 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26127 tggctaacttctctattcccagtgagatcccagacttgccccaggacacctttatccagt 26186
Query: 943 ttcctggatggaccaagg 960
||||||||||||||||||
Sbjct: 26187 ttcctggatggaccaagg 26204
Score = 266 bits (134), Expect = 3e-68
Identities = 134/134 (100%)
Strand = Plus / Plus
Query: 572 ggtcccccagggagtccttgagcgaaatattgtgattaccctgaacataacagggaaagc 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24103 ggtcccccagggagtccttgagcgaaatattgtgattaccctgaacataacagggaaagc 24162
Query: 632 tggagccaccctggacctcctggtggagaacatggggcgtgtgaactatggcaattccat 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24163 tggagccaccctggacctcctggtggagaacatggggcgtgtgaactatggcaattccat 24222
Query: 692 caatgattttaagg 705
||||||||||||||
Sbjct: 24223 caatgattttaagg 24236
Score = 248 bits (125), Expect = 8e-63
Identities = 125/125 (100%)
Strand = Plus / Plus
Query: 17 gatcaattctgaattctacactggctggttagaccattggggccaacctcactcgacagt 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 gatcaattctgaattctacactggctggttagaccattggggccaacctcactcgacagt 795
Query: 77 caagactcaagtggtggcttctttcctccacgacatacttgcccttggtgcaaatgtgaa 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 caagactcaagtggtggcttctttcctccacgacatacttgcccttggtgcaaatgtgaa 855
Query: 137 catgt 141
|||||
Sbjct: 856 catgt 860
Score = 210 bits (106), Expect = 2e-51
Identities = 112/114 (98%)
Strand = Plus / Plus
Query: 180 ggggccaacacaccctaccaaccacagcccaccagctatgattatgatgccccactgagt 239
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6604 ggggccaacacaccccaccaaccacagcccaccagctatgattatgatgccccactgagt 6663
Query: 240 gaggctggggatcttactgagaagtattttgctctgcgagatgtgattcagaag 293
|||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 6664 gaggctggggatctcactgagaagtattttgctctgcgagatgtgattcagaag 6717
Score = 182 bits (92), Expect = 4e-43
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 367 agttaaaaacagtggtggaagctctggacattctgtgtccctctggacccataaaaagct 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20561 agttaaaaacagtggtggaagctctggacattctgtgtccctctggacccataaaaagct 20620
Query: 427 tttatcccttgacatttatccaggtgaaacag 458
||||||||||||||||||||||||||||||||
Sbjct: 20621 tttatcccttgacatttatccaggtgaaacag 20652
Score = 153 bits (77), Expect = 3e-34
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 292 agttcaaaaaagtaccagaaggtcttattcctccatccacacccaagtttgcatatggaa 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17780 agttcaaaaaagtaccagaaggtcttattcctccatccacacccaagtttgcatatggaa 17839
Query: 352 aagttgctctgaaaaag 368
|||||||||||||||||
Sbjct: 17840 aagttgctctgaaaaag 17856
Score = 83.8 bits (42), Expect = 3e-13
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 140 gtacatgtttattggtggcaccaatttcgcctattggaatgg 181
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 945 gtacatgtttattggtggcaccaatttcgcctattggaatgg 986
>gb|GL895089.1| Sus scrofa unplaced genomic scaffold chrU_scaffold369
Length = 783
Score = 236 bits (119), Expect = 3e-59
Identities = 119/119 (100%)
Strand = Plus / Minus
Query: 456 cagtattttgggtttgtactgtaccggacaacgcttcctaaagactgcaaggacccaaca 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 cagtattttgggtttgtactgtaccggacaacgcttcctaaagactgcaaggacccaaca 349
Query: 516 catctctcttcgcccttcaatggtgtccacgatcgggcttatgtctctgtggacggggt 574
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 catctctcttcgcccttcaatggtgtccacgatcgggcttatgtctctgtggacggggt 290
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 46,405,364
Number of extensions: 4861
Number of successful extensions: 4861
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4861
Number of HSP's successfully gapped: 10
Length of query: 1547
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1526
Effective length of database: 2,808,413,156
Effective search space: 4285638476056
Effective search space used: 4285638476056
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)