Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ITT01_0029_H11
(2589 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540920.2| PREDICTED: similar to cytochrome b, ascorbate d... 340 4e-93
Alignment gi|XP_535960.2| PREDICTED: similar to cytochrome b reductase 1 ... 181 2e-45
Alignment gi|XP_853258.1| PREDICTED: similar to Cytochrome b561 (Cytochro... 138 3e-32
>ref|XP_540920.2| PREDICTED: similar to cytochrome b, ascorbate dependent 3 protein
[Canis familiaris].
Length = 242
Score = 340 bits (872), Expect = 4e-93
Identities = 165/242 (68%), Positives = 178/242 (73%)
Frame = +3
Query: 540 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYS 719
MAVGWFYLS +L+ LG MCI+ TIYW++ WH GFAWDGT+L FN+HPV MV G VVLYS
Sbjct: 1 MAVGWFYLSFYSLWFLGLMCIILTIYWVQLWHGGFAWDGTLLMFNYHPVFMVVGSVVLYS 60
Query: 720 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWL 899
AASL YRLPQSWVGPKLPWK+GHA +HL+AFILTVLGL AVF H +I NLYSLHSWL
Sbjct: 61 AASLLYRLPQSWVGPKLPWKIGHAMLHLLAFILTVLGLVAVFQLHRRSRITNLYSLHSWL 120
Query: 900 GITTVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLF 1079
GI TVFLFACQWFLGFVVFLLPW SV LRSLLKPIHVFF NEKLF
Sbjct: 121 GIVTVFLFACQWFLGFVVFLLPWMSVWLRSLLKPIHVFFGVVILSLSIASVISGINEKLF 180
Query: 1080 FSLKNGTTSYSNLPGEAVFANSAGMXXXXXXXXXXYILQASSWKRPEPGLQAERQTLLHG 1259
FSL N T YSNLP EA+FANS GM YIL SSWKRPEPG+ E Q LL
Sbjct: 181 FSLNNATQPYSNLPSEAIFANSLGMLVVVFGLLVLYILLVSSWKRPEPGILTEGQPLLRD 240
Query: 1260 EE 1265
E
Sbjct: 241 GE 242
>ref|XP_535960.2| PREDICTED: similar to cytochrome b reductase 1 [Canis familiaris].
Length = 280
Score = 181 bits (460), Expect = 2e-45
Identities = 86/212 (40%), Positives = 124/212 (58%)
Frame = +3
Query: 585 LGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 764
+G + ++ ++ W+ ++ +G WDGT L FNWHPV MVTG V + A + YRLP +W
Sbjct: 17 VGFLAVVFSLVWVLHYREGLGWDGTALEFNWHPVFMVTGFVFIQGIAIIVYRLPWTWKCS 76
Query: 765 KLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWLGITTVFLFACQWFLG 944
KL K HA +H +A IL ++ L +VF++HN IPN+YSLHSW+G+T V L+ Q LG
Sbjct: 77 KLLMKSIHAGLHTVAAILVIISLVSVFDYHNAGNIPNMYSLHSWVGLTVVILYILQLLLG 136
Query: 945 FVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLFFSLKNGTTSYSNLPG 1124
+VFLLPWA + LR+L+ P+HV+ EKL F G + YS+ P
Sbjct: 137 VLVFLLPWAPLSLRALVMPMHVYSGLLIFGTVIATVLMGVTEKLIF----GVSGYSSFPP 192
Query: 1125 EAVFANSAGMXXXXXXXXXXYILQASSWKRPE 1220
E VFAN+ G+ +I+ W+RP+
Sbjct: 193 EGVFANTLGLLNVVFGALIFWIVTRPQWQRPK 224
>ref|XP_853258.1| PREDICTED: similar to Cytochrome b561 (Cytochrome b-561) [Canis
familiaris].
Length = 252
Score = 138 bits (347), Expect = 3e-32
Identities = 83/222 (37%), Positives = 109/222 (49%)
Frame = +3
Query: 585 LGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 764
LG + T W+ + G AW+G L FN HP+ MV G++ L A L YR+ ++
Sbjct: 24 LGLTVVAMTGAWLGLYRGGIAWEGA-LQFNVHPLCMVIGLIFLQGDALLVYRVFRNEA-- 80
Query: 765 KLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWLGITTVFLFACQWFLG 944
K K+ H +H++A I+ ++GL AVF++H + +LYSLHSW GI L+ QW +G
Sbjct: 81 KRTTKVLHGLLHVLALIIALVGLVAVFDYHRQKGYADLYSLHSWCGILVFVLYFMQWLVG 140
Query: 945 FVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLFFSLKNGTTSYSNLPG 1124
F FL P AS LRS +P HVFF E L F L YS
Sbjct: 141 FSFFLFPGASFSLRSRYRPQHVFFGATIFVLSLGTALLGLKEALLFKL---GAKYSTFEA 197
Query: 1125 EAVFANSAGMXXXXXXXXXXYILQASSWKRPEPGLQAERQTL 1250
E V AN G+ YIL + WKRP QAE Q L
Sbjct: 198 EGVLANVLGLLLASFGVTVLYILTRADWKRPP---QAEEQAL 236
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 114,919,207
Number of extensions: 3570791
Number of successful extensions: 17186
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 17043
Number of HSP's successfully gapped: 3
Length of query: 863
Length of database: 18,874,504
Length adjustment: 112
Effective length of query: 751
Effective length of database: 15,140,872
Effective search space: 11370794872
Effective search space used: 11370794872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ITT01_0029_H11
(2589 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001154926.1| cytochrome b ascorbate-dependent protein 3 i... 355 2e-97
Alignment gi|NP_001154924.1| cytochrome b ascorbate-dependent protein 3 i... 345 9e-95
Alignment gi|NP_705839.3| cytochrome b ascorbate-dependent protein 3 isof... 345 9e-95
Alignment gi|NP_079119.3| cytochrome b reductase 1 isoform 1 [Homo sapien... 174 3e-43
Alignment gi|NP_001017916.1| cytochrome b561 [Homo sapiens]. 133 9e-31
Alignment gi|NP_001017917.1| cytochrome b561 [Homo sapiens]. 133 9e-31
Alignment gi|NP_001906.3| cytochrome b561 [Homo sapiens]. 133 9e-31
Alignment gi|NP_001120855.1| cytochrome b reductase 1 isoform 2 [Homo sap... 60 8e-09
>ref|NP_001154926.1| cytochrome b ascorbate-dependent protein 3 isoform 1 [Homo sapiens].
Length = 259
Score = 355 bits (910), Expect = 2e-97
Identities = 173/247 (70%), Positives = 185/247 (74%)
Frame = +3
Query: 525 ECLIRMAVGWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGM 704
EC+IRM G FYLS L L SLGSMCIL TIYWM+YW GFAW+G+I FNWHPVLMV GM
Sbjct: 13 ECVIRMVSGRFYLSCLLLGSLGSMCILFTIYWMQYWRGGFAWNGSIYMFNWHPVLMVAGM 72
Query: 705 VVLYSAASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYS 884
VV Y ASL YRLPQSWVGPKLPWKL HAA+HLMAF+LTV+GL AVF FHNH + NLYS
Sbjct: 73 VVFYGGASLVYRLPQSWVGPKLPWKLLHAALHLMAFVLTVVGLVAVFTFHNHGRTANLYS 132
Query: 885 LHSWLGITTVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXX 1064
LHSWLGITTVFLFACQWFLGF VFLLPWAS+ LRSLLKPIHVFF
Sbjct: 133 LHSWLGITTVFLFACQWFLGFAVFLLPWASMWLRSLLKPIHVFFGAAILSLSIASVISGI 192
Query: 1065 NEKLFFSLKNGTTSYSNLPGEAVFANSAGMXXXXXXXXXXYILQASSWKRPEPGLQAERQ 1244
NEKLFFSLKN T Y +LP EAVFANS GM YIL ASSWKRPEPG+ +RQ
Sbjct: 193 NEKLFFSLKNTTRPYHSLPSEAVFANSTGMLVVAFGLLVLYILLASSWKRPEPGILTDRQ 252
Query: 1245 TLLHGEE 1265
LLH E
Sbjct: 253 PLLHDGE 259
>ref|NP_001154924.1| cytochrome b ascorbate-dependent protein 3 isoform 2 [Homo sapiens].
Length = 242
Score = 345 bits (886), Expect = 9e-95
Identities = 169/242 (69%), Positives = 180/242 (74%)
Frame = +3
Query: 540 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYS 719
M G FYLS L L SLGSMCIL TIYWM+YW GFAW+G+I FNWHPVLMV GMVV Y
Sbjct: 1 MVSGRFYLSCLLLGSLGSMCILFTIYWMQYWRGGFAWNGSIYMFNWHPVLMVAGMVVFYG 60
Query: 720 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWL 899
ASL YRLPQSWVGPKLPWKL HAA+HLMAF+LTV+GL AVF FHNH + NLYSLHSWL
Sbjct: 61 GASLVYRLPQSWVGPKLPWKLLHAALHLMAFVLTVVGLVAVFTFHNHGRTANLYSLHSWL 120
Query: 900 GITTVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLF 1079
GITTVFLFACQWFLGF VFLLPWAS+ LRSLLKPIHVFF NEKLF
Sbjct: 121 GITTVFLFACQWFLGFAVFLLPWASMWLRSLLKPIHVFFGAAILSLSIASVISGINEKLF 180
Query: 1080 FSLKNGTTSYSNLPGEAVFANSAGMXXXXXXXXXXYILQASSWKRPEPGLQAERQTLLHG 1259
FSLKN T Y +LP EAVFANS GM YIL ASSWKRPEPG+ +RQ LLH
Sbjct: 181 FSLKNTTRPYHSLPSEAVFANSTGMLVVAFGLLVLYILLASSWKRPEPGILTDRQPLLHD 240
Query: 1260 EE 1265
E
Sbjct: 241 GE 242
>ref|NP_705839.3| cytochrome b ascorbate-dependent protein 3 isoform 2 [Homo sapiens].
Length = 242
Score = 345 bits (886), Expect = 9e-95
Identities = 169/242 (69%), Positives = 180/242 (74%)
Frame = +3
Query: 540 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYS 719
M G FYLS L L SLGSMCIL TIYWM+YW GFAW+G+I FNWHPVLMV GMVV Y
Sbjct: 1 MVSGRFYLSCLLLGSLGSMCILFTIYWMQYWRGGFAWNGSIYMFNWHPVLMVAGMVVFYG 60
Query: 720 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWL 899
ASL YRLPQSWVGPKLPWKL HAA+HLMAF+LTV+GL AVF FHNH + NLYSLHSWL
Sbjct: 61 GASLVYRLPQSWVGPKLPWKLLHAALHLMAFVLTVVGLVAVFTFHNHGRTANLYSLHSWL 120
Query: 900 GITTVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLF 1079
GITTVFLFACQWFLGF VFLLPWAS+ LRSLLKPIHVFF NEKLF
Sbjct: 121 GITTVFLFACQWFLGFAVFLLPWASMWLRSLLKPIHVFFGAAILSLSIASVISGINEKLF 180
Query: 1080 FSLKNGTTSYSNLPGEAVFANSAGMXXXXXXXXXXYILQASSWKRPEPGLQAERQTLLHG 1259
FSLKN T Y +LP EAVFANS GM YIL ASSWKRPEPG+ +RQ LLH
Sbjct: 181 FSLKNTTRPYHSLPSEAVFANSTGMLVVAFGLLVLYILLASSWKRPEPGILTDRQPLLHD 240
Query: 1260 EE 1265
E
Sbjct: 241 GE 242
>ref|NP_079119.3| cytochrome b reductase 1 isoform 1 [Homo sapiens].
Length = 286
Score = 174 bits (442), Expect = 3e-43
Identities = 92/250 (36%), Positives = 133/250 (53%), Gaps = 1/250 (0%)
Frame = +3
Query: 552 WFYLSAL-ALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYSAAS 728
W +L+ L + +G + ++ + W+ ++ +G WDG+ L FNWHPVLMVTG V + A
Sbjct: 7 WRFLALLGSALLVGFLSVIFALVWVLHYREGLGWDGSALEFNWHPVLMVTGFVFIQGIAI 66
Query: 729 LAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWLGIT 908
+ YRLP +W KL K HA ++ +A IL ++ + AVF HN I N+YSLHSW+G+
Sbjct: 67 IVYRLPWTWKCSKLLMKSIHAGLNAVAAILAIISVVAVFENHNVNNIANMYSLHSWVGLI 126
Query: 909 TVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLFFSL 1088
V + Q GF VFLLPWA + LR+ L PIHV+ EKL FSL
Sbjct: 127 AVICYLLQLLSGFSVFLLPWAPLSLRAFLMPIHVYSGIVIFGTVIATALMGLTEKLIFSL 186
Query: 1089 KNGTTSYSNLPGEAVFANSAGMXXXXXXXXXXYILQASSWKRPEPGLQAERQTLLHGEE* 1268
++ +YS P E VF N+ G+ +I+ WKRP + T+LH
Sbjct: 187 RD--PAYSTFPPEGVFVNTLGLLILVFGALIFWIVTRPQWKRP----KEPNSTILHPNGG 240
Query: 1269 SRRGFQEQSP 1298
+ +G + P
Sbjct: 241 TEQGARGSMP 250
>ref|NP_001017916.1| cytochrome b561 [Homo sapiens].
Length = 251
Score = 133 bits (334), Expect = 9e-31
Identities = 80/222 (36%), Positives = 108/222 (48%)
Frame = +3
Query: 585 LGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 764
LG + T W+ + G AW+ L FN HP+ MV G++ L A L YR+ ++
Sbjct: 23 LGLTLVAMTGAWLGLYRGGIAWESD-LQFNAHPLCMVIGLIFLQGNALLVYRVFRNEA-- 79
Query: 765 KLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWLGITTVFLFACQWFLG 944
K K+ H +H+ A ++ ++GL AVF++H + +LYSLHSW GI L+ QW +G
Sbjct: 80 KRTTKVLHGLLHIFALVIALVGLVAVFDYHRKKGYADLYSLHSWCGILVFVLYFVQWLVG 139
Query: 945 FVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLFFSLKNGTTSYSNLPG 1124
F FL P AS LRS +P H+FF E L F+L YS
Sbjct: 140 FSFFLFPGASFSLRSRYRPQHIFFGATIFLLSVGTALLGLKEALLFNLGG---KYSAFEP 196
Query: 1125 EAVFANSAGMXXXXXXXXXXYILQASSWKRPEPGLQAERQTL 1250
E V AN G+ YIL + WKRP QAE Q L
Sbjct: 197 EGVLANVLGLLLACFGGAVLYILTRADWKRPS---QAEEQAL 235
>ref|NP_001017917.1| cytochrome b561 [Homo sapiens].
Length = 251
Score = 133 bits (334), Expect = 9e-31
Identities = 80/222 (36%), Positives = 108/222 (48%)
Frame = +3
Query: 585 LGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 764
LG + T W+ + G AW+ L FN HP+ MV G++ L A L YR+ ++
Sbjct: 23 LGLTLVAMTGAWLGLYRGGIAWESD-LQFNAHPLCMVIGLIFLQGNALLVYRVFRNEA-- 79
Query: 765 KLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWLGITTVFLFACQWFLG 944
K K+ H +H+ A ++ ++GL AVF++H + +LYSLHSW GI L+ QW +G
Sbjct: 80 KRTTKVLHGLLHIFALVIALVGLVAVFDYHRKKGYADLYSLHSWCGILVFVLYFVQWLVG 139
Query: 945 FVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLFFSLKNGTTSYSNLPG 1124
F FL P AS LRS +P H+FF E L F+L YS
Sbjct: 140 FSFFLFPGASFSLRSRYRPQHIFFGATIFLLSVGTALLGLKEALLFNLGG---KYSAFEP 196
Query: 1125 EAVFANSAGMXXXXXXXXXXYILQASSWKRPEPGLQAERQTL 1250
E V AN G+ YIL + WKRP QAE Q L
Sbjct: 197 EGVLANVLGLLLACFGGAVLYILTRADWKRPS---QAEEQAL 235
>ref|NP_001906.3| cytochrome b561 [Homo sapiens].
Length = 251
Score = 133 bits (334), Expect = 9e-31
Identities = 80/222 (36%), Positives = 108/222 (48%)
Frame = +3
Query: 585 LGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 764
LG + T W+ + G AW+ L FN HP+ MV G++ L A L YR+ ++
Sbjct: 23 LGLTLVAMTGAWLGLYRGGIAWESD-LQFNAHPLCMVIGLIFLQGNALLVYRVFRNEA-- 79
Query: 765 KLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWLGITTVFLFACQWFLG 944
K K+ H +H+ A ++ ++GL AVF++H + +LYSLHSW GI L+ QW +G
Sbjct: 80 KRTTKVLHGLLHIFALVIALVGLVAVFDYHRKKGYADLYSLHSWCGILVFVLYFVQWLVG 139
Query: 945 FVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLFFSLKNGTTSYSNLPG 1124
F FL P AS LRS +P H+FF E L F+L YS
Sbjct: 140 FSFFLFPGASFSLRSRYRPQHIFFGATIFLLSVGTALLGLKEALLFNLGG---KYSAFEP 196
Query: 1125 EAVFANSAGMXXXXXXXXXXYILQASSWKRPEPGLQAERQTL 1250
E V AN G+ YIL + WKRP QAE Q L
Sbjct: 197 EGVLANVLGLLLACFGGAVLYILTRADWKRPS---QAEEQAL 235
>ref|NP_001120855.1| cytochrome b reductase 1 isoform 2 [Homo sapiens].
Length = 157
Score = 60.5 bits (145), Expect = 8e-09
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Frame = +3
Query: 552 WFYLSAL-ALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYSAAS 728
W +L+ L + +G + ++ + W+ ++ +G WDG+ L FNWHPVLMVTG V + AS
Sbjct: 7 WRFLALLGSALLVGFLSVIFALVWVLHYREGLGWDGSALEFNWHPVLMVTGFVFIQGIAS 66
Query: 729 LAYRLPQSWVGPKLPWKLGHA 791
+ + +G + HA
Sbjct: 67 FRFFSLSASMGSAFSPSISHA 87
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 112,610,739
Number of extensions: 3472621
Number of successful extensions: 16269
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 16141
Number of HSP's successfully gapped: 8
Length of query: 863
Length of database: 18,297,164
Length adjustment: 111
Effective length of query: 752
Effective length of database: 14,638,160
Effective search space: 11007896320
Effective search space used: 11007896320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA ITT01_0029_H11
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ITT01_0029_H11
(2589 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092619.1| cytochrome b ascorbate-dependent protein 3 [... 380 e-105
Alignment gi|NP_001192978.1| cytochrome b reductase 1 [Bos taurus]. 195 1e-49
Alignment gi|XP_002685326.1| PREDICTED: cytochrome b reductase 1-like [Bo... 195 1e-49
Alignment gi|NP_777262.1| cytochrome b561 [Bos taurus]. 139 2e-32
>ref|NP_001092619.1| cytochrome b ascorbate-dependent protein 3 [Bos taurus].
Length = 265
Score = 380 bits (976), Expect = e-105
Identities = 183/235 (77%), Positives = 193/235 (82%)
Frame = +3
Query: 540 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYS 719
MAVGWFYLS LAL SLGSMCIL TIYWMRYWH GFAWDG++L FNWHPVLMVTGMVVLYS
Sbjct: 1 MAVGWFYLSVLALCSLGSMCILFTIYWMRYWHGGFAWDGSMLMFNWHPVLMVTGMVVLYS 60
Query: 720 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWL 899
AASL YRLPQSWVGP+LPWK GHAAMHL+AF+LTVLGL AVF FHNH KIP+LYSLHSWL
Sbjct: 61 AASLVYRLPQSWVGPRLPWKSGHAAMHLLAFLLTVLGLHAVFEFHNHAKIPHLYSLHSWL 120
Query: 900 GITTVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLF 1079
GITTVFLFACQWFLGF VFLLPWAS+ LRSLLKPIHVFF NEKLF
Sbjct: 121 GITTVFLFACQWFLGFSVFLLPWASMWLRSLLKPIHVFFGASILSLAIASVVSGINEKLF 180
Query: 1080 FSLKNGTTSYSNLPGEAVFANSAGMXXXXXXXXXXYILQASSWKRPEPGLQAERQ 1244
FSLKNGT +YSNLP EAVFAN AGM YIL ASSWKRPEPG+QAER+
Sbjct: 181 FSLKNGTKTYSNLPSEAVFANCAGMLVVVFGLLVLYILLASSWKRPEPGMQAERE 235
>ref|NP_001192978.1| cytochrome b reductase 1 [Bos taurus].
Length = 285
Score = 195 bits (496), Expect = 1e-49
Identities = 99/224 (44%), Positives = 134/224 (59%)
Frame = +3
Query: 549 GWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYSAAS 728
G+ L AL +G + ++ T+ W+ + +G WDGT L FNWHPVL+VTG V + A
Sbjct: 8 GFLALLVSALL-VGFLSVIFTLIWVLHHREGLGWDGTALEFNWHPVLVVTGFVFILGIAI 66
Query: 729 LAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWLGIT 908
+ YRLP +W KL K HA ++ +A IL ++ L AVF+FHN +KIPN+YSLHSW+G+T
Sbjct: 67 IVYRLPWTWKCSKLLMKSIHAGLNTVAAILAIISLVAVFDFHNAKKIPNMYSLHSWVGLT 126
Query: 909 TVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLFFSL 1088
V L+ Q LGF VFLLPWA + LR+LL PIHV+ EKL F+L
Sbjct: 127 AVILYILQLLLGFFVFLLPWAPLSLRALLMPIHVYSGLFIFGTVIATVLMGLTEKLIFAL 186
Query: 1089 KNGTTSYSNLPGEAVFANSAGMXXXXXXXXXXYILQASSWKRPE 1220
KN SYS+LP E +F N+ G+ +I+ WKRP+
Sbjct: 187 KN--PSYSSLPPEGIFTNTLGLLILVFGALIFWIVTRPQWKRPK 228
>ref|XP_002685326.1| PREDICTED: cytochrome b reductase 1-like [Bos taurus].
Length = 285
Score = 195 bits (496), Expect = 1e-49
Identities = 99/224 (44%), Positives = 134/224 (59%)
Frame = +3
Query: 549 GWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYSAAS 728
G+ L AL +G + ++ T+ W+ + +G WDGT L FNWHPVL+VTG V + A
Sbjct: 8 GFLALLVSALL-VGFLSVIFTLIWVLHHREGLGWDGTALEFNWHPVLVVTGFVFILGIAI 66
Query: 729 LAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWLGIT 908
+ YRLP +W KL K HA ++ +A IL ++ L AVF+FHN +KIPN+YSLHSW+G+T
Sbjct: 67 IVYRLPWTWKCSKLLMKSIHAGLNTVAAILAIISLVAVFDFHNAKKIPNMYSLHSWVGLT 126
Query: 909 TVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLFFSL 1088
V L+ Q LGF VFLLPWA + LR+LL PIHV+ EKL F+L
Sbjct: 127 AVILYILQLLLGFFVFLLPWAPLSLRALLMPIHVYSGLFIFGTVIATVLMGLTEKLIFAL 186
Query: 1089 KNGTTSYSNLPGEAVFANSAGMXXXXXXXXXXYILQASSWKRPE 1220
KN SYS+LP E +F N+ G+ +I+ WKRP+
Sbjct: 187 KN--PSYSSLPPEGIFTNTLGLLILVFGALIFWIVTRPQWKRPK 228
>ref|NP_777262.1| cytochrome b561 [Bos taurus].
Length = 273
Score = 139 bits (349), Expect = 2e-32
Identities = 85/222 (38%), Positives = 109/222 (49%)
Frame = +3
Query: 585 LGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 764
LG + + T W+ + G AW+ L FN HP+ M+ G+V L A L YR+ ++
Sbjct: 45 LGLIVVAMTGAWLGMYRGGIAWESA-LQFNVHPLCMIIGLVFLQGDALLVYRVFRNEA-- 101
Query: 765 KLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWLGITTVFLFACQWFLG 944
K K+ H +H+ AF++ ++GL AVF H + +LYSLHSW GI LF QW +G
Sbjct: 102 KRTTKVLHGLLHVFAFVIALVGLVAVFEHHRKKGYADLYSLHSWCGILVFALFFAQWLVG 161
Query: 945 FVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLFFSLKNGTTSYSNLPG 1124
F FL P AS LRS +P HVFF E L F L T YS
Sbjct: 162 FSFFLFPGASFSLRSRYRPQHVFFGAAIFLLSVATALLGLKEALLFEL---GTKYSMFEP 218
Query: 1125 EAVFANSAGMXXXXXXXXXXYILQASSWKRPEPGLQAERQTL 1250
E V AN G+ YIL + WKRP LQAE Q L
Sbjct: 219 EGVLANVLGLLLATFATVILYILTRADWKRP---LQAEEQAL 257
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 110,694,347
Number of extensions: 3501526
Number of successful extensions: 16932
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 16785
Number of HSP's successfully gapped: 4
Length of query: 863
Length of database: 17,681,374
Length adjustment: 111
Effective length of query: 752
Effective length of database: 14,008,606
Effective search space: 10534471712
Effective search space used: 10534471712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ITT01_0029_H11
(2589 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_958739.1| cytochrome b ascorbate-dependent protein 3 [Mus... 345 1e-94
Alignment gi|NP_082869.2| cytochrome b reductase 1 [Mus musculus]. 175 1e-43
Alignment gi|NP_031831.2| cytochrome b561 [Mus musculus]. 137 4e-32
>ref|NP_958739.1| cytochrome b ascorbate-dependent protein 3 [Mus musculus].
Length = 242
Score = 345 bits (884), Expect = 1e-94
Identities = 164/242 (67%), Positives = 180/242 (74%)
Frame = +3
Query: 540 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYS 719
MA GWFYLS + L SLGSMCIL T YWM+YW GFAWDGT+L FNWHPVLMV GMVVLY
Sbjct: 1 MASGWFYLSCMVLGSLGSMCILFTAYWMQYWRGGFAWDGTVLMFNWHPVLMVAGMVVLYG 60
Query: 720 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWL 899
AASL YRLP SWVGP+LPWK+ HAA+HL+AF TV+GL AVF FHNH +I +LYSLHSWL
Sbjct: 61 AASLVYRLPSSWVGPRLPWKVLHAALHLLAFTCTVVGLIAVFRFHNHSRIAHLYSLHSWL 120
Query: 900 GITTVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLF 1079
GITTV LFACQWFLGF VFLLPWAS LRSLLKP+HVFF NEKLF
Sbjct: 121 GITTVVLFACQWFLGFAVFLLPWASQWLRSLLKPLHVFFGACILSLSITSVISGINEKLF 180
Query: 1080 FSLKNGTTSYSNLPGEAVFANSAGMXXXXXXXXXXYILQASSWKRPEPGLQAERQTLLHG 1259
F LKN T YS+LPGEAVFANS G+ Y+L ASSWKRP+PG +RQ LLH
Sbjct: 181 FVLKNATKPYSSLPGEAVFANSTGLLVVAFGLLVLYVLLASSWKRPDPGALTDRQPLLHD 240
Query: 1260 EE 1265
E
Sbjct: 241 RE 242
>ref|NP_082869.2| cytochrome b reductase 1 [Mus musculus].
Length = 290
Score = 175 bits (444), Expect = 1e-43
Identities = 86/215 (40%), Positives = 126/215 (58%), Gaps = 1/215 (0%)
Frame = +3
Query: 585 LGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 764
+G + ++ + W+ ++ +G W+G+ L FNWHPVL VTG V + A + YRLP +W
Sbjct: 19 VGFLSVIFVLIWVLHFREGLGWNGSGLEFNWHPVLAVTGFVFIQGIAIIVYRLPWTWKCS 78
Query: 765 KLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWLGITTVFLFACQWFLG 944
KL K HA ++ +A IL ++ + AVF +HN +K+P++YSLHSW+G+T + L+ Q +G
Sbjct: 79 KLLMKSIHAGLNAVAAILAIISVVAVFEYHNVQKVPHMYSLHSWVGLTALILYIQQLVVG 138
Query: 945 FVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLFFSLKNGTTSYSNLPG 1124
F VFLLPWA LR+++ PIHV+ EKLFF LK+ SY + P
Sbjct: 139 FFVFLLPWAPPSLRAIVMPIHVYSGLLLFGTVIATVLMGVTEKLFFVLKH--PSYHSFPP 196
Query: 1125 EAVFANSAGMXXXXXXXXXXYILQASSWKRP-EPG 1226
E VF N+ G+ +I+ WKRP EPG
Sbjct: 197 EGVFTNTLGLLILVFGALIFWIVTRPQWKRPREPG 231
>ref|NP_031831.2| cytochrome b561 [Mus musculus].
Length = 250
Score = 137 bits (345), Expect = 4e-32
Identities = 83/222 (37%), Positives = 109/222 (49%)
Frame = +3
Query: 585 LGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 764
LG + T W+ + G AW+ + L FN HP+ MV GM+ L A L YR+ +
Sbjct: 22 LGLTVVAVTGAWLGLYRGGIAWESS-LQFNVHPLCMVIGMIFLQGDALLVYRVFRREA-- 78
Query: 765 KLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWLGITTVFLFACQWFLG 944
K K+ H +H+ AFI+ ++GL AVF++H + +LYSLHSW GI L+ QW +G
Sbjct: 79 KRTTKILHGLLHVFAFIIALVGLVAVFDYHKKKGYADLYSLHSWCGILVFVLYFVQWLVG 138
Query: 945 FVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLFFSLKNGTTSYSNLPG 1124
F FL P AS LRS +P H+FF E L F L + YS
Sbjct: 139 FSFFLFPGASFSLRSRYRPQHIFFGATIFLFSVGTALLGLKEALLFKL---GSKYSTFEP 195
Query: 1125 EAVFANSAGMXXXXXXXXXXYILQASSWKRPEPGLQAERQTL 1250
E V AN G+ YIL + WKRP QAE Q L
Sbjct: 196 EGVLANVLGLLLVCFGVVVLYILAQADWKRPS---QAEEQAL 234
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 94,632,239
Number of extensions: 2852102
Number of successful extensions: 13062
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 12967
Number of HSP's successfully gapped: 3
Length of query: 863
Length of database: 15,617,559
Length adjustment: 110
Effective length of query: 753
Effective length of database: 12,313,599
Effective search space: 9272140047
Effective search space used: 9272140047
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ITT01_0029_H11
(2589 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122687.1| PREDICTED: cytochrome b ascorbate-dependent ... 441 e-123
Alignment gi|XP_003122686.1| PREDICTED: cytochrome b ascorbate-dependent ... 441 e-123
Alignment gi|NP_001121924.1| cytochrome b reductase 1 [Sus scrofa]. 189 5e-48
Alignment gi|NP_001090991.1| cytochrome b561 [Sus scrofa]. 141 2e-33
>ref|XP_003122687.1| PREDICTED: cytochrome b ascorbate-dependent protein 3-like isoform 2
[Sus scrofa].
Length = 242
Score = 441 bits (1134), Expect = e-123
Identities = 215/242 (88%), Positives = 215/242 (88%)
Frame = +3
Query: 540 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYS 719
MAVGWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYS
Sbjct: 1 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYS 60
Query: 720 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWL 899
AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWL
Sbjct: 61 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWL 120
Query: 900 GITTVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLF 1079
GITTVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFF NEKLF
Sbjct: 121 GITTVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFFGASILSLAIASVISGINEKLF 180
Query: 1080 FSLKNGTTSYSNLPGEAVFANSAGMXXXXXXXXXXYILQASSWKRPEPGLQAERQTLLHG 1259
FSLKNGTTSYSNLP EAVFANSAGM YILQASSWKRPEPGLQAERQTLLHG
Sbjct: 181 FSLKNGTTSYSNLPDEAVFANSAGMLVVVFGLLVLYILQASSWKRPEPGLQAERQTLLHG 240
Query: 1260 EE 1265
EE
Sbjct: 241 EE 242
>ref|XP_003122686.1| PREDICTED: cytochrome b ascorbate-dependent protein 3-like isoform 1
[Sus scrofa].
Length = 242
Score = 441 bits (1134), Expect = e-123
Identities = 215/242 (88%), Positives = 215/242 (88%)
Frame = +3
Query: 540 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYS 719
MAVGWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYS
Sbjct: 1 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYS 60
Query: 720 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWL 899
AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWL
Sbjct: 61 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWL 120
Query: 900 GITTVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLF 1079
GITTVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFF NEKLF
Sbjct: 121 GITTVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFFGASILSLAIASVISGINEKLF 180
Query: 1080 FSLKNGTTSYSNLPGEAVFANSAGMXXXXXXXXXXYILQASSWKRPEPGLQAERQTLLHG 1259
FSLKNGTTSYSNLP EAVFANSAGM YILQASSWKRPEPGLQAERQTLLHG
Sbjct: 181 FSLKNGTTSYSNLPDEAVFANSAGMLVVVFGLLVLYILQASSWKRPEPGLQAERQTLLHG 240
Query: 1260 EE 1265
EE
Sbjct: 241 EE 242
>ref|NP_001121924.1| cytochrome b reductase 1 [Sus scrofa].
Length = 285
Score = 189 bits (481), Expect = 5e-48
Identities = 96/224 (42%), Positives = 132/224 (58%)
Frame = +3
Query: 549 GWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYSAAS 728
G+ L AL +G + ++ T+ W+ ++ +G WDGT L FNWHPVL+VTG V + A
Sbjct: 8 GFLALLVSALL-VGFLSVIFTLIWVLHYREGLGWDGTALEFNWHPVLIVTGFVFIQGIAI 66
Query: 729 LAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWLGIT 908
+ YRLP +W KL K HA ++ +A IL ++ L AVF+FHN KIPN+YSLHSW+G+
Sbjct: 67 IVYRLPWTWKCSKLLMKSIHAGLNTVAAILAIISLVAVFDFHNARKIPNMYSLHSWVGLA 126
Query: 909 TVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLFFSL 1088
V L+ Q LGF VFLLPWA + LR+LL PIHV+ EKL F+L
Sbjct: 127 AVILYMLQLLLGFFVFLLPWAPLSLRALLMPIHVYSGLLIFGTVIATVLMGVTEKLIFAL 186
Query: 1089 KNGTTSYSNLPGEAVFANSAGMXXXXXXXXXXYILQASSWKRPE 1220
+ + +YS LP E VF N+ G+ +I+ WKRP+
Sbjct: 187 Q--SPAYSTLPPEGVFTNTFGLLVLVFGALIFWIVTRPQWKRPK 228
>ref|NP_001090991.1| cytochrome b561 [Sus scrofa].
Length = 252
Score = 141 bits (355), Expect = 2e-33
Identities = 85/222 (38%), Positives = 111/222 (50%)
Frame = +3
Query: 585 LGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 764
LG + T W+ + G AW+ L FN HP+ M+ G+V L A L YR+ ++
Sbjct: 24 LGLTVVAVTGAWLGAYRGGIAWESA-LQFNVHPLCMIIGLVFLQGDALLVYRVFRNEA-- 80
Query: 765 KLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWLGITTVFLFACQWFLG 944
K K+ H +H++AF++ ++GL AVF++H + I +LYSLHSW GI LF QW +G
Sbjct: 81 KRTTKILHGLLHVLAFVIALVGLVAVFDYHRKKGIADLYSLHSWCGILVFVLFLAQWLVG 140
Query: 945 FVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLFFSLKNGTTSYSNLPG 1124
FL P AS LRS +P HVFF E L F L T YS
Sbjct: 141 LGFFLFPGASFSLRSRYRPQHVFFGAAIFLLSVGTALLGLKEALLFQL---GTKYSAFES 197
Query: 1125 EAVFANSAGMXXXXXXXXXXYILQASSWKRPEPGLQAERQTL 1250
E V AN G+ YIL + WKRP LQAE Q L
Sbjct: 198 EGVLANVLGLLLVAFGAVVLYILTRADWKRP---LQAEEQAL 236
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 71,915,668
Number of extensions: 2313733
Number of successful extensions: 11111
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 11015
Number of HSP's successfully gapped: 4
Length of query: 863
Length of database: 11,343,932
Length adjustment: 108
Effective length of query: 755
Effective length of database: 8,655,056
Effective search space: 6534567280
Effective search space used: 6534567280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ITT01_0029_H11
(2589 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 2587 0.0
>Sscrofa_Chr02
|| Length = 162569375
Score = 2587 bits (1305), Expect = 0.0
Identities = 1320/1325 (99%)
Strand = Plus / Plus
Query: 1242 cagaccctgttgcacggggaggagtgaagcaggagggggttccaggagcagtcgccaggc 1301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9703010 cagaccctgttgcacggggaggagtgaagcaggagggggttccaggagcagtcgccaggc 9703069
Query: 1302 ggtcttcagaggctctgctttcccgggggctcccatctggttcagggccccagtccccct 1361
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 9703070 ggtcttcagaggctctgctttcccgggggctcccatctggttcggggccccagtccccct 9703129
Query: 1362 cgcctctgtgctgggcctgctctccccacagcctgctgctcaccccctctgcatggtggc 1421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9703130 cgcctctgtgctgggcctgctctccccacagcctgctgctcaccccctctgcatggtggc 9703189
Query: 1422 tttggctgctccagcccttcttggcattgacttcccacgtcctctttttaccccggcccc 1481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9703190 tttggctgctccagcccttcttggcattgacttcccacgtcctctttttaccccggcccc 9703249
Query: 1482 cttgccctagctgcccgcgccactcctgctcacaaggagtcaaggtcatttccccttcag 1541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9703250 cttgccctagctgcccgcgccactcctgctcacaaggagtcaaggtcatttccccttcag 9703309
Query: 1542 acccccggggatgtgggagaaaagcctgatggctcagatgaactgggagtggagcgcagc 1601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9703310 acccccggggatgtgggagaaaagcctgatggctcagatgaactgggagtggagcgcagc 9703369
Query: 1602 ctgtgctgtgaatgagggggaggcgatgcttccatcagctttccccgtgcaggtcaggcc 1661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9703370 ctgtgctgtgaatgagggggaggcgatgcttccatcagctttccccgtgcaggtcaggcc 9703429
Query: 1662 gcccgccctgggttgcgcttcttctgctctggtctccatccagcccctccagacgtgagg 1721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9703430 gcccgccctgggttgcgcttcttctgctctggtctccatccagcccctccagacgtgagg 9703489
Query: 1722 cggggcggacacgcgtgcacgcggtggagggagaggggccaagggcagagctgctccgca 1781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9703490 cggggcggacacgcgtgcacgcggtggagggagaggggccaagggcagagctgctccgca 9703549
Query: 1782 gagaagctgagggccccctgctcccgctgcctcgtgtctacacacgtgcccttcttgctg 1841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9703550 gagaagctgagggccccctgctcccgctgcctcgtgtctacacacgtgcccttcttgctg 9703609
Query: 1842 ctgctacagccggggcctggatcccggcctttccctgtgactgacacgctcatcaccatc 1901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9703610 ctgctacagccggggcctggatcccggcctttccctgtgactgacacgctcatcaccatc 9703669
Query: 1902 ggacagctctctgaaccctggtggccctgtgtccgaaccctggaagcagcctttcccttc 1961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9703670 ggacagctctctgaaccctggtggccctgtgtccgaaccctggaagcagcctttcccttc 9703729
Query: 1962 cctcccctcgtcaggcccgggcaccttcaaccttgctgtctcggcagggcccttggccag 2021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9703730 cctcccctcgtcaggcccgggcaccttcaaccttgctgtctcggcagggcccttggccag 9703789
Query: 2022 cggttgtcacgtgccagctcaccatgaaacgtgccgaagatgtggtgtgtcgtgcccagc 2081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9703790 cggttgtcacgtgccagctcaccatgaaacgtgccgaagatgtggtgtgtcgtgcccagc 9703849
Query: 2082 agagccctgggagcacggccgcttctggaggcttccttgctgagtgtcaaagtgcctcac 2141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9703850 agagccctgggagcacggccgcttctggaggcttccttgctgagtgtcaaagtgcctcac 9703909
Query: 2142 gtgcccgtacagcagccacccgcctggcaaacccagtctcaggtgtaatgctgcagtgtg 2201
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 9703910 gtgcccgtacagcagccacccgcctggcaaacccagtctcaggtgtaatgctgcagcgtg 9703969
Query: 2202 tgcccttgcccttttcccgacgagaccggggtggcgggtcttgcttctgtgttggcatcg 2261
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9703970 tgcccttgctcttttcccgacgagaccggggtggcgggtcttgcttctgtgttggcatcg 9704029
Query: 2262 cggcttttcctgctctctgcaaaccagtgctgccaggccctgggctcagtactgttgtgc 2321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9704030 cggcttttcctgctctctgcaaaccagtgctgccaggccctgggctcagtactgttgtgc 9704089
Query: 2322 ttaggtgacaagcagcacaacaccaggggccccaagtgggcttactgcttggcaggtggc 2381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9704090 ttaggtgacaagcagcacaacaccaggggccccaagtgggcttactgcttggcaggtggc 9704149
Query: 2382 cacaaagctggccgtccaccctgccccatgtggccagatgctggcgggaggctacggtgg 2441
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 9704150 cacaaagctggccgtccaccctgccccatgtggccagatgctggcaggaggctacggtgg 9704209
Query: 2442 aacttcctgatccactggaatgactgccaggcaccttggtcccaggaccacctacacccc 2501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9704210 aacttcctgatccactggaatgactgccaggcaccttggtcccaggaccacctacacccc 9704269
Query: 2502 tttccacgtgggtaggcgtttcacttacgaagctggattttcattaaatgtgttttttaa 2561
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9704270 tttctacgtgggtaggcgtttcacttacgaagctggattttcattaaatgtgttttttaa 9704329
Query: 2562 gaatc 2566
|||||
Sbjct: 9704330 gaatc 9704334
Score = 416 bits (210), Expect = e-113
Identities = 210/210 (100%)
Strand = Plus / Plus
Query: 723 gcgtcgctggcgtaccgcctgccccagtcatgggtagggcccaagctgccctggaagttg 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9700219 gcgtcgctggcgtaccgcctgccccagtcatgggtagggcccaagctgccctggaagttg 9700278
Query: 783 ggccacgcagccatgcacctgatggccttcatcctgactgtgctggggctggcggccgtc 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9700279 ggccacgcagccatgcacctgatggccttcatcctgactgtgctggggctggcggccgtc 9700338
Query: 843 tttaactttcacaaccacgagaagatccccaacctctactccctgcacagctggctgggc 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9700339 tttaactttcacaaccacgagaagatccccaacctctactccctgcacagctggctgggc 9700398
Query: 903 atcaccaccgtcttcctcttcgcctgccag 932
||||||||||||||||||||||||||||||
Sbjct: 9700399 atcaccaccgtcttcctcttcgcctgccag 9700428
Score = 406 bits (205), Expect = e-110
Identities = 205/205 (100%)
Strand = Plus / Plus
Query: 519 aggagcgagtgcctgatcagaatggctgtgggatggttttacctgtcggccctggcgctg 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9694957 aggagcgagtgcctgatcagaatggctgtgggatggttttacctgtcggccctggcgctg 9695016
Query: 579 ttctccctgggctccatgtgcatcctctccaccatctattggatgcggtactggcacaaa 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9695017 ttctccctgggctccatgtgcatcctctccaccatctattggatgcggtactggcacaaa 9695076
Query: 639 ggctttgcctgggatggcaccatactcacgttcaactggcacccggtgctcatggtgact 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9695077 ggctttgcctgggatggcaccatactcacgttcaactggcacccggtgctcatggtgact 9695136
Query: 699 ggcatggtggtgctctacagtgctg 723
|||||||||||||||||||||||||
Sbjct: 9695137 ggcatggtggtgctctacagtgctg 9695161
Score = 315 bits (159), Expect = 7e-83
Identities = 159/159 (100%)
Strand = Plus / Plus
Query: 930 cagtggttcttgggctttgtggtctttctgctgccctgggcgtctgtgcggctgcgcagc 989
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9701373 cagtggttcttgggctttgtggtctttctgctgccctgggcgtctgtgcggctgcgcagc 9701432
Query: 990 ctccttaaacccatccacgtcttctttggagcctccattctctctctggccattgcgtct 1049
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9701433 ctccttaaacccatccacgtcttctttggagcctccattctctctctggccattgcgtct 9701492
Query: 1050 gtcatttccggcatcaatgagaagctcttcttcagtttg 1088
|||||||||||||||||||||||||||||||||||||||
Sbjct: 9701493 gtcatttccggcatcaatgagaagctcttcttcagtttg 9701531
Score = 303 bits (153), Expect = 3e-79
Identities = 156/157 (99%)
Strand = Plus / Plus
Query: 1088 gaaaaatggcaccacttcatactccaacctgcccggtgaggccgtcttcgcgaacagtgc 1147
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 9702230 gaaaaatggcaccacttcatactccaacctgcccgatgaggccgtcttcgcgaacagtgc 9702289
Query: 1148 ggggatgctggtggtggtctttgggctgctggtgctctatatcttacaggcctcgtcttg 1207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9702290 ggggatgctggtggtggtctttgggctgctggtgctctatatcttacaggcctcgtcttg 9702349
Query: 1208 gaaacgcccagagccagggctccaggccgaaagacag 1244
|||||||||||||||||||||||||||||||||||||
Sbjct: 9702350 gaaacgcccagagccagggctccaggccgaaagacag 9702386
Score = 246 bits (124), Expect = 5e-62
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 163 ggtggtggtttttaagtacggaagggcccttggttccaccggaggaatctgccgtgggtc 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9690278 ggtggtggtttttaagtacggaagggcccttggttccaccggaggaatctgccgtgggtc 9690337
Query: 223 cccgagttcctggagctgtcttccgtatacctgagtcagaccagagcacagtccgaaggg 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9690338 cccgagttcctggagctgtcttccgtatacctgagtcagaccagagcacagtccgaaggg 9690397
Query: 283 cggg 286
||||
Sbjct: 9690398 cggg 9690401
Score = 230 bits (116), Expect = 3e-57
Identities = 125/128 (97%)
Strand = Plus / Plus
Query: 285 ggcaggagggctcatctgtgtactgtgtgcagtaaaacattccagccatctgtcaggaaa 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9691614 ggcaggagggctcatctgtgtactgtgtgcagtaaaacattccagccatctgtcaggaaa 9691673
Query: 345 gtgttcccactatggatttcaagtctgtctcaaagcagcagtccaggaccaggacctctt 404
|||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||
Sbjct: 9691674 gtgttcccactatggatttcaagtctgtctcagagcaacagtccaagaccaggacctctt 9691733
Query: 405 ctagggag 412
||||||||
Sbjct: 9691734 ctagggag 9691741
Score = 212 bits (107), Expect = 7e-52
Identities = 110/111 (99%)
Strand = Plus / Plus
Query: 411 agatgagaagactgagtcctacaaacattaaatgattttctcaagcagcctcagtgcata 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9693334 agatgagaagactgagtcctacaaacattaaatgattttctcaagcagcctcagtgcata 9693393
Query: 471 agaattggggtccaggccaccactccgtcagcctgcctctaggtgtgaagg 521
||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 9693394 agaattggggtccagaccaccactccgtcagcctgcctctaggtgtgaagg 9693444
Score = 174 bits (88), Expect = 2e-40
Identities = 94/96 (97%)
Strand = Plus / Plus
Query: 71 tctgggactctcgggagctgcggctccggcgccaggtggcaagacgcgggtctcggagac 130
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 9690032 tctgggaccctcgggagcggcggctccggcgccaggtggcaagacgcgggtctcggagac 9690091
Query: 131 gccagcctccgtgcatcccactgtggttcgggggtg 166
||||||||||||||||||||||||||||||||||||
Sbjct: 9690092 gccagcctccgtgcatcccactgtggttcgggggtg 9690127
Score = 85.7 bits (43), Expect = 1e-13
Identities = 46/47 (97%)
Strand = Plus / Plus
Query: 1 tagaaggcagtggctgcaggtggctgtcggtttaagcagttgcgtgc 47
||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 9689968 tagaaggcagtggctgctggtggctgtcggtttaagcagttgcgtgc 9690014
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 69,547,605
Number of extensions: 507
Number of successful extensions: 507
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 507
Number of HSP's successfully gapped: 10
Length of query: 2589
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2567
Effective length of database: 2,808,408,574
Effective search space: 7209184809458
Effective search space used: 7209184809458
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)