Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LNG01_0005_H03
(1155 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001020493.1| eukaryotic translation initiation factor 3 s... 289 4e-78
>ref|NP_001020493.1| eukaryotic translation initiation factor 3 subunit H [Bos taurus].
Length = 352
Score = 289 bits (739), Expect = 4e-78
Identities = 147/175 (84%), Positives = 150/175 (85%)
Frame = +1
Query: 484 KRRIFSPEALKKGNITFEHMFEEVPIVIKNSHLINVLMWELEKKSAVADKHELLSLASSN 663
K + FSPEALKKGNITFEHMFEEVPIVIKNSHLINVLMWELEKKSAVADKHELLSLASSN
Sbjct: 178 KEKDFSPEALKKGNITFEHMFEEVPIVIKNSHLINVLMWELEKKSAVADKHELLSLASSN 237
Query: 664 HLGKNLQLLMDRVDEMSQDIVKYNTYLRNTSKXXXXXXXXXXXXXXXXXXXXXXGEPPLP 843
HLGK LQLLMDRVDEMSQDIVKYNTY+RNTSK GEPPLP
Sbjct: 238 HLGKTLQLLMDRVDEMSQDIVKYNTYMRNTSKQQQQKHQYQQRRQQENMQRQSRGEPPLP 297
Query: 844 EEDLSKLFKPHQPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYNN 1008
EEDLSKLFKPHQPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYN+
Sbjct: 298 EEDLSKLFKPHQPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYNS 352
Score = 246 bits (628), Expect = 3e-65
Identities = 133/190 (70%), Positives = 136/190 (71%), Gaps = 25/190 (13%)
Frame = +3
Query: 27 MASRKEXXXXXXXXXXXXXXXXXXXXXXXXXXDSAVKQVQIDGLVVLKIIKHYQEEGQGT 206
MASRKE DSAVKQVQIDGLVVLKIIKHYQEEGQGT
Sbjct: 1 MASRKEGTGSSATSSSSTTGAAGKGKGKGGSGDSAVKQVQIDGLVVLKIIKHYQEEGQGT 60
Query: 207 E-------------------------HTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWY 311
E HTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWY
Sbjct: 61 EVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWY 120
Query: 312 QSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEK 491
QSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEK
Sbjct: 121 QSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEK 180
Query: 492 DFFSRSIEKG 521
DF +++KG
Sbjct: 181 DFSPEALKKG 190
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,304,325
Number of extensions: 828469
Number of successful extensions: 2139
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2135
Number of HSP's successfully gapped: 2
Length of query: 385
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 281
Effective length of database: 14,240,222
Effective search space: 4001502382
Effective search space used: 4001502382
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LNG01_0005_H03
(1155 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003747.1| eukaryotic translation initiation factor 3 subu... 285 7e-77
>ref|NP_003747.1| eukaryotic translation initiation factor 3 subunit H [Homo sapiens].
Length = 352
Score = 285 bits (728), Expect = 7e-77
Identities = 146/175 (83%), Positives = 149/175 (85%)
Frame = +1
Query: 484 KRRIFSPEALKKGNITFEHMFEEVPIVIKNSHLINVLMWELEKKSAVADKHELLSLASSN 663
K + FSPEALKK NITFE+MFEEVPIVIKNSHLINVLMWELEKKSAVADKHELLSLASSN
Sbjct: 178 KEKDFSPEALKKANITFEYMFEEVPIVIKNSHLINVLMWELEKKSAVADKHELLSLASSN 237
Query: 664 HLGKNLQLLMDRVDEMSQDIVKYNTYLRNTSKXXXXXXXXXXXXXXXXXXXXXXGEPPLP 843
HLGKNLQLLMDRVDEMSQDIVKYNTY+RNTSK GEPPLP
Sbjct: 238 HLGKNLQLLMDRVDEMSQDIVKYNTYMRNTSKQQQQKHQYQQRRQQENMQRQSRGEPPLP 297
Query: 844 EEDLSKLFKPHQPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYNN 1008
EEDLSKLFKP QPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYNN
Sbjct: 298 EEDLSKLFKPPQPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYNN 352
Score = 244 bits (622), Expect = 1e-64
Identities = 132/189 (69%), Positives = 135/189 (71%), Gaps = 25/189 (13%)
Frame = +3
Query: 27 MASRKEXXXXXXXXXXXXXXXXXXXXXXXXXXDSAVKQVQIDGLVVLKIIKHYQEEGQGT 206
MASRKE DSAVKQVQIDGLVVLKIIKHYQEEGQGT
Sbjct: 1 MASRKEGTGSTATSSSSTAGAAGKGKGKGGSGDSAVKQVQIDGLVVLKIIKHYQEEGQGT 60
Query: 207 E-------------------------HTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWY 311
E HTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWY
Sbjct: 61 EVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWY 120
Query: 312 QSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEK 491
QSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEK
Sbjct: 121 QSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEK 180
Query: 492 DFFSRSIEK 518
DF +++K
Sbjct: 181 DFSPEALKK 189
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,142,085
Number of extensions: 815730
Number of successful extensions: 2204
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2202
Number of HSP's successfully gapped: 2
Length of query: 385
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 281
Effective length of database: 14,868,908
Effective search space: 4178163148
Effective search space used: 4178163148
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LNG01_0005_H03
(1155 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_855439.1| PREDICTED: similar to eukaryotic translation in... 275 e-107
Alignment gi|XP_860929.1| PREDICTED: similar to eukaryotic translation in... 289 3e-78
Alignment gi|XP_532315.1| PREDICTED: similar to eukaryotic translation in... 289 3e-78
Alignment gi|XP_860962.1| PREDICTED: similar to eukaryotic translation in... 246 3e-65
Alignment gi|XP_860898.1| PREDICTED: similar to eukaryotic translation in... 161 1e-39
Alignment gi|XP_860864.1| PREDICTED: similar to eukaryotic translation in... 69 8e-12
>ref|XP_855439.1| PREDICTED: similar to eukaryotic translation initiation factor 3,
subunit 3 gamma, 40kDa [Canis familiaris].
Length = 289
Score = 275 bits (704), Expect(2) = e-107
Identities = 142/171 (83%), Positives = 144/171 (84%)
Frame = +1
Query: 496 FSPEALKKGNITFEHMFEEVPIVIKNSHLINVLMWELEKKSAVADKHELLSLASSNHLGK 675
FSPEALKKGNITFEH FEEVPI IKNSHLINVL+WELEKKSAVADKHELLSLASSNHLGK
Sbjct: 119 FSPEALKKGNITFEHTFEEVPIGIKNSHLINVLLWELEKKSAVADKHELLSLASSNHLGK 178
Query: 676 NLQLLMDRVDEMSQDIVKYNTYLRNTSKXXXXXXXXXXXXXXXXXXXXXXGEPPLPEEDL 855
NLQLLMDRVDEMSQDIVKYNTY+RNTSK E PLPEEDL
Sbjct: 179 NLQLLMDRVDEMSQDIVKYNTYMRNTSKQQQQKRQYQQPRRQENMQHQSQREAPLPEEDL 238
Query: 856 SKLFKPHQPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYNN 1008
SKLFKP QPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYNN
Sbjct: 239 SKLFKPPQPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYNN 289
Score = 134 bits (336), Expect(2) = e-107
Identities = 83/165 (50%), Positives = 91/165 (55%)
Frame = +3
Query: 27 MASRKEXXXXXXXXXXXXXXXXXXXXXXXXXXDSAVKQVQIDGLVVLKIIKHYQEEGQGT 206
MASRKE DSAVKQ QIDGLVVLKII+HYQEEGQ T
Sbjct: 1 MASRKEGTGSAAPSSSSTTGQVGKGKGKGGSRDSAVKQGQIDGLVVLKIIEHYQEEGQAT 60
Query: 207 EHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWYQSTYYGSFVTRALLDSQFSYQHAIE 386
E ++ V ALLDSQFSYQHAIE
Sbjct: 61 EVVQE--------------------------------------VLLALLDSQFSYQHAIE 82
Query: 387 ESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEKDFFSRSIEKG 521
ESVVLIY+PIK AQGSLSLKAYRLTPKLMEVC+EKDF +++KG
Sbjct: 83 ESVVLIYNPIKAAQGSLSLKAYRLTPKLMEVCEEKDFSPEALKKG 127
>ref|XP_860929.1| PREDICTED: similar to eukaryotic translation initiation factor 3,
subunit 3 gamma, 40kDa isoform 6 [Canis familiaris].
Length = 252
Score = 289 bits (740), Expect = 3e-78
Identities = 148/175 (84%), Positives = 150/175 (85%)
Frame = +1
Query: 484 KRRIFSPEALKKGNITFEHMFEEVPIVIKNSHLINVLMWELEKKSAVADKHELLSLASSN 663
K + FSPEALKKGNITFEHMFEEVPIVIKNSHLINVLMWELEKKSAVADKHELLSLASSN
Sbjct: 78 KEKDFSPEALKKGNITFEHMFEEVPIVIKNSHLINVLMWELEKKSAVADKHELLSLASSN 137
Query: 664 HLGKNLQLLMDRVDEMSQDIVKYNTYLRNTSKXXXXXXXXXXXXXXXXXXXXXXGEPPLP 843
HLGKNLQLLMDRVDEMSQDIVKYNTY+RNTSK GEPPLP
Sbjct: 138 HLGKNLQLLMDRVDEMSQDIVKYNTYMRNTSKQQQQKHQYQQRRQQENMQRQSRGEPPLP 197
Query: 844 EEDLSKLFKPHQPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYNN 1008
EEDLSKLFKP QPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYNN
Sbjct: 198 EEDLSKLFKPPQPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYNN 252
Score = 174 bits (440), Expect = 2e-43
Identities = 84/90 (93%), Positives = 87/90 (96%)
Frame = +3
Query: 252 MEMMRSLRHVNIDHLHVGWYQSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQG 431
MEMMRSLRHVNIDHLHVGWYQSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQG
Sbjct: 1 MEMMRSLRHVNIDHLHVGWYQSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQG 60
Query: 432 SLSLKAYRLTPKLMEVCKEKDFFSRSIEKG 521
SLSLKAYRLTPKLMEVCKEKDF +++KG
Sbjct: 61 SLSLKAYRLTPKLMEVCKEKDFSPEALKKG 90
>ref|XP_532315.1| PREDICTED: similar to eukaryotic translation initiation factor 3,
subunit 3 gamma, 40kDa isoform 1 [Canis familiaris].
Length = 352
Score = 289 bits (740), Expect = 3e-78
Identities = 148/175 (84%), Positives = 150/175 (85%)
Frame = +1
Query: 484 KRRIFSPEALKKGNITFEHMFEEVPIVIKNSHLINVLMWELEKKSAVADKHELLSLASSN 663
K + FSPEALKKGNITFEHMFEEVPIVIKNSHLINVLMWELEKKSAVADKHELLSLASSN
Sbjct: 178 KEKDFSPEALKKGNITFEHMFEEVPIVIKNSHLINVLMWELEKKSAVADKHELLSLASSN 237
Query: 664 HLGKNLQLLMDRVDEMSQDIVKYNTYLRNTSKXXXXXXXXXXXXXXXXXXXXXXGEPPLP 843
HLGKNLQLLMDRVDEMSQDIVKYNTY+RNTSK GEPPLP
Sbjct: 238 HLGKNLQLLMDRVDEMSQDIVKYNTYMRNTSKQQQQKHQYQQRRQQENMQRQSRGEPPLP 297
Query: 844 EEDLSKLFKPHQPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYNN 1008
EEDLSKLFKP QPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYNN
Sbjct: 298 EEDLSKLFKPPQPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYNN 352
Score = 246 bits (628), Expect = 3e-65
Identities = 133/190 (70%), Positives = 136/190 (71%), Gaps = 25/190 (13%)
Frame = +3
Query: 27 MASRKEXXXXXXXXXXXXXXXXXXXXXXXXXXDSAVKQVQIDGLVVLKIIKHYQEEGQGT 206
MASRKE DSAVKQVQIDGLVVLKIIKHYQEEGQGT
Sbjct: 1 MASRKEGAGSAATSSSSTTGPAGKGKGKGGSGDSAVKQVQIDGLVVLKIIKHYQEEGQGT 60
Query: 207 E-------------------------HTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWY 311
E HTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWY
Sbjct: 61 EVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWY 120
Query: 312 QSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEK 491
QSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEK
Sbjct: 121 QSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEK 180
Query: 492 DFFSRSIEKG 521
DF +++KG
Sbjct: 181 DFSPEALKKG 190
>ref|XP_860962.1| PREDICTED: similar to eukaryotic translation initiation factor 3,
subunit 3 gamma, 40kDa isoform 7 [Canis familiaris].
Length = 303
Score = 246 bits (628), Expect = 3e-65
Identities = 133/190 (70%), Positives = 136/190 (71%), Gaps = 25/190 (13%)
Frame = +3
Query: 27 MASRKEXXXXXXXXXXXXXXXXXXXXXXXXXXDSAVKQVQIDGLVVLKIIKHYQEEGQGT 206
MASRKE DSAVKQVQIDGLVVLKIIKHYQEEGQGT
Sbjct: 1 MASRKEGAGSAATSSSSTTGPAGKGKGKGGSGDSAVKQVQIDGLVVLKIIKHYQEEGQGT 60
Query: 207 E-------------------------HTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWY 311
E HTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWY
Sbjct: 61 EVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWY 120
Query: 312 QSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEK 491
QSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEK
Sbjct: 121 QSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEK 180
Query: 492 DFFSRSIEKG 521
DF +++KG
Sbjct: 181 DFSPEALKKG 190
Score = 177 bits (449), Expect = 2e-44
Identities = 88/92 (95%), Positives = 90/92 (97%)
Frame = +1
Query: 484 KRRIFSPEALKKGNITFEHMFEEVPIVIKNSHLINVLMWELEKKSAVADKHELLSLASSN 663
K + FSPEALKKGNITFEHMFEEVPIVIKNSHLINVLMWELEKKSAVADKHELLSLASSN
Sbjct: 178 KEKDFSPEALKKGNITFEHMFEEVPIVIKNSHLINVLMWELEKKSAVADKHELLSLASSN 237
Query: 664 HLGKNLQLLMDRVDEMSQDIVKYNTYLRNTSK 759
HLGKNLQLLMDRVDEMSQDIVKYNTY+RNTSK
Sbjct: 238 HLGKNLQLLMDRVDEMSQDIVKYNTYMRNTSK 269
>ref|XP_860898.1| PREDICTED: similar to eukaryotic translation initiation factor 3,
subunit 3 gamma, 40kDa isoform 5 [Canis familiaris].
Length = 106
Score = 161 bits (407), Expect = 1e-39
Identities = 82/106 (77%), Positives = 83/106 (78%)
Frame = +1
Query: 691 MDRVDEMSQDIVKYNTYLRNTSKXXXXXXXXXXXXXXXXXXXXXXGEPPLPEEDLSKLFK 870
MDRVDEMSQDIVKYNTY+RNTSK GEPPLPEEDLSKLFK
Sbjct: 1 MDRVDEMSQDIVKYNTYMRNTSKQQQQKHQYQQRRQQENMQRQSRGEPPLPEEDLSKLFK 60
Query: 871 PHQPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYNN 1008
P QPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYNN
Sbjct: 61 PPQPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYNN 106
>ref|XP_860864.1| PREDICTED: similar to eukaryotic translation initiation factor 3,
subunit 3 gamma, 40kDa isoform 4 [Canis familiaris].
Length = 99
Score = 68.9 bits (167), Expect = 8e-12
Identities = 45/96 (46%), Positives = 45/96 (46%), Gaps = 25/96 (26%)
Frame = +3
Query: 27 MASRKEXXXXXXXXXXXXXXXXXXXXXXXXXXDSAVKQVQIDGLVVLKIIKHYQEEGQGT 206
MASRKE DSAVKQVQIDGLVVLKIIKHYQEEGQGT
Sbjct: 1 MASRKEGAGSAATSSSSTTGPAGKGKGKGGSGDSAVKQVQIDGLVVLKIIKHYQEEGQGT 60
Query: 207 E-------------------------HTEDDADFDE 239
E HTEDDADFDE
Sbjct: 61 EVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDE 96
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,661,218
Number of extensions: 814784
Number of successful extensions: 2232
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2225
Number of HSP's successfully gapped: 11
Length of query: 385
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 280
Effective length of database: 15,374,224
Effective search space: 4304782720
Effective search space used: 4304782720
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LNG01_0005_H03
(1155 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_542366.1| eukaryotic translation initiation factor 3 subu... 283 1e-76
>ref|NP_542366.1| eukaryotic translation initiation factor 3 subunit H [Mus musculus].
Length = 352
Score = 283 bits (725), Expect = 1e-76
Identities = 144/175 (82%), Positives = 149/175 (85%)
Frame = +1
Query: 484 KRRIFSPEALKKGNITFEHMFEEVPIVIKNSHLINVLMWELEKKSAVADKHELLSLASSN 663
K + FSPEALKK +ITFEHMFEEVPIVIKNSHLINVLMWELEKKSAVADKHELLSLASSN
Sbjct: 178 KEKDFSPEALKKASITFEHMFEEVPIVIKNSHLINVLMWELEKKSAVADKHELLSLASSN 237
Query: 664 HLGKNLQLLMDRVDEMSQDIVKYNTYLRNTSKXXXXXXXXXXXXXXXXXXXXXXGEPPLP 843
HLGK+LQLLMDRVDEMSQDI+KYNTY+RNTSK GEPPLP
Sbjct: 238 HLGKSLQLLMDRVDEMSQDIIKYNTYMRNTSKQQQQKHQYQQRRQQENMQRQSRGEPPLP 297
Query: 844 EEDLSKLFKPHQPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYNN 1008
EEDLSKLFKPHQ PARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYNN
Sbjct: 298 EEDLSKLFKPHQAPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYNN 352
Score = 244 bits (622), Expect = 1e-64
Identities = 132/189 (69%), Positives = 135/189 (71%), Gaps = 25/189 (13%)
Frame = +3
Query: 27 MASRKEXXXXXXXXXXXXXXXXXXXXXXXXXXDSAVKQVQIDGLVVLKIIKHYQEEGQGT 206
MASRKE DSAVKQVQIDGLVVLKIIKHYQEEGQGT
Sbjct: 1 MASRKEGTGSTATSSGSAGGAVGKGKGKGGSGDSAVKQVQIDGLVVLKIIKHYQEEGQGT 60
Query: 207 E-------------------------HTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWY 311
E HTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWY
Sbjct: 61 EVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWY 120
Query: 312 QSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEK 491
QSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEK
Sbjct: 121 QSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEK 180
Query: 492 DFFSRSIEK 518
DF +++K
Sbjct: 181 DFSPEALKK 189
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,954,310
Number of extensions: 699905
Number of successful extensions: 1917
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1914
Number of HSP's successfully gapped: 2
Length of query: 385
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 282
Effective length of database: 12,523,851
Effective search space: 3531725982
Effective search space used: 3531725982
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LNG01_0005_H03
(1155 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003355036.1| PREDICTED: eukaryotic translation initiation... 294 7e-80
Alignment gi|XP_003125563.2| PREDICTED: eukaryotic translation initiation... 294 7e-80
>ref|XP_003355036.1| PREDICTED: eukaryotic translation initiation factor 3 subunit H-like
isoform 2 [Sus scrofa].
Length = 352
Score = 294 bits (752), Expect = 7e-80
Identities = 150/175 (85%), Positives = 151/175 (86%)
Frame = +1
Query: 484 KRRIFSPEALKKGNITFEHMFEEVPIVIKNSHLINVLMWELEKKSAVADKHELLSLASSN 663
K + FSPEALKKGNITFEHMFEEVPIVIKNSHLINVLMWELEKKSAVADKHELLSLASSN
Sbjct: 178 KEKDFSPEALKKGNITFEHMFEEVPIVIKNSHLINVLMWELEKKSAVADKHELLSLASSN 237
Query: 664 HLGKNLQLLMDRVDEMSQDIVKYNTYLRNTSKXXXXXXXXXXXXXXXXXXXXXXGEPPLP 843
HLGKNLQLLMDRVDEMSQDIVKYNTYLRNTSK GEPPLP
Sbjct: 238 HLGKNLQLLMDRVDEMSQDIVKYNTYLRNTSKQQQQKHQYQQRRQQENMQRQSRGEPPLP 297
Query: 844 EEDLSKLFKPHQPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYNN 1008
EEDLSKLFKPHQPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYNN
Sbjct: 298 EEDLSKLFKPHQPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYNN 352
Score = 246 bits (628), Expect = 2e-65
Identities = 133/190 (70%), Positives = 136/190 (71%), Gaps = 25/190 (13%)
Frame = +3
Query: 27 MASRKEXXXXXXXXXXXXXXXXXXXXXXXXXXDSAVKQVQIDGLVVLKIIKHYQEEGQGT 206
MASRKE DSAVKQVQIDGLVVLKIIKHYQEEGQGT
Sbjct: 1 MASRKEGTGSAATSSSSTTGAAGKGKGKGGSGDSAVKQVQIDGLVVLKIIKHYQEEGQGT 60
Query: 207 E-------------------------HTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWY 311
E HTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWY
Sbjct: 61 EVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWY 120
Query: 312 QSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEK 491
QSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEK
Sbjct: 121 QSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEK 180
Query: 492 DFFSRSIEKG 521
DF +++KG
Sbjct: 181 DFSPEALKKG 190
>ref|XP_003125563.2| PREDICTED: eukaryotic translation initiation factor 3 subunit H-like
isoform 1 [Sus scrofa].
Length = 352
Score = 294 bits (752), Expect = 7e-80
Identities = 150/175 (85%), Positives = 151/175 (86%)
Frame = +1
Query: 484 KRRIFSPEALKKGNITFEHMFEEVPIVIKNSHLINVLMWELEKKSAVADKHELLSLASSN 663
K + FSPEALKKGNITFEHMFEEVPIVIKNSHLINVLMWELEKKSAVADKHELLSLASSN
Sbjct: 178 KEKDFSPEALKKGNITFEHMFEEVPIVIKNSHLINVLMWELEKKSAVADKHELLSLASSN 237
Query: 664 HLGKNLQLLMDRVDEMSQDIVKYNTYLRNTSKXXXXXXXXXXXXXXXXXXXXXXGEPPLP 843
HLGKNLQLLMDRVDEMSQDIVKYNTYLRNTSK GEPPLP
Sbjct: 238 HLGKNLQLLMDRVDEMSQDIVKYNTYLRNTSKQQQQKHQYQQRRQQENMQRQSRGEPPLP 297
Query: 844 EEDLSKLFKPHQPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYNN 1008
EEDLSKLFKPHQPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYNN
Sbjct: 298 EEDLSKLFKPHQPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYNN 352
Score = 246 bits (628), Expect = 2e-65
Identities = 133/190 (70%), Positives = 136/190 (71%), Gaps = 25/190 (13%)
Frame = +3
Query: 27 MASRKEXXXXXXXXXXXXXXXXXXXXXXXXXXDSAVKQVQIDGLVVLKIIKHYQEEGQGT 206
MASRKE DSAVKQVQIDGLVVLKIIKHYQEEGQGT
Sbjct: 1 MASRKEGTGSAATSSSSTTGAAGKGKGKGGSGDSAVKQVQIDGLVVLKIIKHYQEEGQGT 60
Query: 207 E-------------------------HTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWY 311
E HTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWY
Sbjct: 61 EVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWY 120
Query: 312 QSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEK 491
QSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEK
Sbjct: 121 QSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEK 180
Query: 492 DFFSRSIEKG 521
DF +++KG
Sbjct: 181 DFSPEALKKG 190
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,943,102
Number of extensions: 573704
Number of successful extensions: 1339
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1335
Number of HSP's successfully gapped: 4
Length of query: 385
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 284
Effective length of database: 8,829,335
Effective search space: 2507531140
Effective search space used: 2507531140
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LNG01_0005_H03
(1155 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 408 e-111
>Sscrofa_Chr04
|| Length = 143465943
Score = 408 bits (206), Expect = e-111
Identities = 206/206 (100%)
Strand = Plus / Plus
Query: 911 caggccagattaacacttactgccagaacatcaaggagttcactgcccaaaacttaggca 970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23448658 caggccagattaacacttactgccagaacatcaaggagttcactgcccaaaacttaggca 23448717
Query: 971 aactcttcatggcccaggctcttcaagaatacaacaactaagaaaaggaagtttccagaa 1030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23448718 aactcttcatggcccaggctcttcaagaatacaacaactaagaaaaggaagtttccagaa 23448777
Query: 1031 aaggagttaacatggactcttgagatcacattggggcgacttttggaagaaacacacttg 1090
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23448778 aaggagttaacatggactcttgagatcacattggggcgacttttggaagaaacacacttg 23448837
Query: 1091 catattgaaaagtctttctagcacat 1116
||||||||||||||||||||||||||
Sbjct: 23448838 catattgaaaagtctttctagcacat 23448863
Score = 337 bits (170), Expect = 8e-90
Identities = 170/170 (100%)
Strand = Plus / Plus
Query: 239 agttcaatatcagatggaaatgatgcgcagccttcgccacgtaaacattgaccatctcca 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23434124 agttcaatatcagatggaaatgatgcgcagccttcgccacgtaaacattgaccatctcca 23434183
Query: 299 tgtgggctggtaccagtccacatactatggctcttttgtcacccgggcacttctggattc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23434184 tgtgggctggtaccagtccacatactatggctcttttgtcacccgggcacttctggattc 23434243
Query: 359 tcagtttagttaccagcatgcgattgaagagtctgttgttctcatttacg 408
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23434244 tcagtttagttaccagcatgcgattgaagagtctgttgttctcatttacg 23434293
Score = 301 bits (152), Expect = 4e-79
Identities = 152/152 (100%)
Strand = Plus / Minus
Query: 10 cctgtccggctaggaagatggcgtcccgcaaggaaggcactggttctgccgccacctctt 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23195743 cctgtccggctaggaagatggcgtcccgcaaggaaggcactggttctgccgccacctctt 23195684
Query: 70 ccagctccaccaccggcgctgctgggaaaggcaaaggcaaaggagggtctggagattcgg 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23195683 ccagctccaccaccggcgctgctgggaaaggcaaaggcaaaggagggtctggagattcgg 23195624
Query: 130 cggtgaagcaagtgcagatagatggcttggtg 161
||||||||||||||||||||||||||||||||
Sbjct: 23195623 cggtgaagcaagtgcagatagatggcttggtg 23195592
Score = 301 bits (152), Expect = 4e-79
Identities = 152/152 (100%)
Strand = Plus / Plus
Query: 10 cctgtccggctaggaagatggcgtcccgcaaggaaggcactggttctgccgccacctctt 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23328002 cctgtccggctaggaagatggcgtcccgcaaggaaggcactggttctgccgccacctctt 23328061
Query: 70 ccagctccaccaccggcgctgctgggaaaggcaaaggcaaaggagggtctggagattcgg 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23328062 ccagctccaccaccggcgctgctgggaaaggcaaaggcaaaggagggtctggagattcgg 23328121
Query: 130 cggtgaagcaagtgcagatagatggcttggtg 161
||||||||||||||||||||||||||||||||
Sbjct: 23328122 cggtgaagcaagtgcagatagatggcttggtg 23328153
Score = 297 bits (150), Expect = 7e-78
Identities = 150/150 (100%)
Strand = Plus / Plus
Query: 510 attgaaaaagggaaatatcacctttgagcacatgtttgaagaagtgccgattgtcattaa 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23437103 attgaaaaagggaaatatcacctttgagcacatgtttgaagaagtgccgattgtcattaa 23437162
Query: 570 aaattcacatctgatcaatgtcctaatgtgggagcttgagaagaagtcagctgtagcaga 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23437163 aaattcacatctgatcaatgtcctaatgtgggagcttgagaagaagtcagctgtagcaga 23437222
Query: 630 taaacatgaattgctcagtcttgccagcag 659
||||||||||||||||||||||||||||||
Sbjct: 23437223 taaacatgaattgctcagtcttgccagcag 23437252
Score = 270 bits (136), Expect = 2e-69
Identities = 136/136 (100%)
Strand = Plus / Plus
Query: 779 agtatcagcagcgccgccagcaggagaatatgcagcgccagagtcgaggagaaccgccac 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23447140 agtatcagcagcgccgccagcaggagaatatgcagcgccagagtcgaggagaaccgccac 23447199
Query: 839 tccctgaggaggacctgtccaagctcttcaagccgcaccagccccctgccaggatggatt 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23447200 tccctgaggaggacctgtccaagctcttcaagccgcaccagccccctgccaggatggatt 23447259
Query: 899 cactgctcattgcagg 914
||||||||||||||||
Sbjct: 23447260 cactgctcattgcagg 23447275
Score = 246 bits (124), Expect = 2e-62
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 657 cagcaatcatttggggaagaacctccagttgctgatggacagagtggatgaaatgagcca 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23444469 cagcaatcatttggggaagaacctccagttgctgatggacagagtggatgaaatgagcca 23444528
Query: 717 agatatagttaaatataacacatatctgaggaacacgagtaaacagcagcagcagaaaca 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23444529 agatatagttaaatataacacatatctgaggaacacgagtaaacagcagcagcagaaaca 23444588
Query: 777 tcag 780
||||
Sbjct: 23444589 tcag 23444592
Score = 186 bits (94), Expect = 2e-44
Identities = 101/102 (99%), Gaps = 1/102 (0%)
Strand = Plus / Plus
Query: 408 gatcccataaaaactgcccaaggatctctctcactaaaggcatacagactgactcctaaa 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23435803 gatcccataaaaactgcccaaggatctctctcactaaaggcatacagactgactcctaaa 23435862
Query: 468 ctgatggaagtttgtaaagagaaggattttttctcccgaagc 509
|||||||||||||||||||||||||| |||||||||||||||
Sbjct: 23435863 ctgatggaagtttgtaaagagaagga-tttttctcccgaagc 23435903
Score = 103 bits (52), Expect = 2e-19
Identities = 52/52 (100%)
Strand = Plus / Minus
Query: 158 ggtggtcttgaagattatcaaacattaccaagaagaaggacaaggaactgag 209
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23170918 ggtggtcttgaagattatcaaacattaccaagaagaaggacaaggaactgag 23170867
Score = 103 bits (52), Expect = 2e-19
Identities = 52/52 (100%)
Strand = Plus / Plus
Query: 158 ggtggtcttgaagattatcaaacattaccaagaagaaggacaaggaactgag 209
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23352826 ggtggtcttgaagattatcaaacattaccaagaagaaggacaaggaactgag 23352877
Score = 65.9 bits (33), Expect = 5e-08
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 208 agcacacagaagatgatgctgactttgatgaag 240
|||||||||||||||||||||||||||||||||
Sbjct: 23170793 agcacacagaagatgatgctgactttgatgaag 23170761
Score = 65.9 bits (33), Expect = 5e-08
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 208 agcacacagaagatgatgctgactttgatgaag 240
|||||||||||||||||||||||||||||||||
Sbjct: 23352951 agcacacagaagatgatgctgactttgatgaag 23352983
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,896,650
Number of extensions: 227
Number of successful extensions: 227
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 12
Length of query: 1155
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1134
Effective length of database: 2,808,413,156
Effective search space: 3184740518904
Effective search space used: 3184740518904
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)