Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LNG01_0023_A02
(2083 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_777028.2| solute carrier family 2, facilitated glucose tr... 92 2e-18
Alignment gi|XP_002707801.1| PREDICTED: solute carrier family 2, facilita... 83 1e-15
Alignment gi|NP_777027.1| solute carrier family 2, facilitated glucose tr... 69 2e-11
Alignment gi|NP_001094512.1| solute carrier family 2, facilitated glucose... 50 6e-06
>ref|NP_777028.2| solute carrier family 2, facilitated glucose transporter member 3
[Bos taurus].
Length = 494
Score = 91.7 bits (226), Expect = 2e-18
Identities = 46/54 (85%), Positives = 49/54 (90%)
Frame = +3
Query: 765 IIKDFLNNTLREKSKSMPSEVLLTSLWSLSVAIFSVGGMIGSFSVGLFVNKFGR 926
IIKDFLN TL E+S+ PS VLLTSLWSLSVAIFSVGGMIGSFSVGLFVN+FGR
Sbjct: 37 IIKDFLNYTLEERSEPPPSSVLLTSLWSLSVAIFSVGGMIGSFSVGLFVNRFGR 90
Score = 69.7 bits (169), Expect = 9e-12
Identities = 31/37 (83%), Positives = 35/37 (94%)
Frame = +2
Query: 140 MGTAKVTTPLVFAITIATIGSFQFGYNTGVINAPEAV 250
MGT KVT PL+FAI++ATIGSFQFGYNTGVINAPEA+
Sbjct: 1 MGTTKVTAPLIFAISVATIGSFQFGYNTGVINAPEAI 37
>ref|XP_002707801.1| PREDICTED: solute carrier family 2, facilitated glucose transporter
member 3-like [Bos taurus].
Length = 1082
Score = 82.8 bits (203), Expect = 1e-15
Identities = 41/55 (74%), Positives = 47/55 (85%)
Frame = +3
Query: 762 QIIKDFLNNTLREKSKSMPSEVLLTSLWSLSVAIFSVGGMIGSFSVGLFVNKFGR 926
+IIKDFLN L + S + PS +LLT LWSLSVAIFSVGGMIGSFS+GLFVN+FGR
Sbjct: 36 EIIKDFLNYALEKWSGTPPSSMLLTFLWSLSVAIFSVGGMIGSFSIGLFVNRFGR 90
Score = 67.8 bits (164), Expect = 4e-11
Identities = 30/37 (81%), Positives = 34/37 (91%)
Frame = +2
Query: 140 MGTAKVTTPLVFAITIATIGSFQFGYNTGVINAPEAV 250
MGTAKVT PL+F I++ATIGSFQFGYNTGVINAPE +
Sbjct: 1 MGTAKVTAPLIFTISVATIGSFQFGYNTGVINAPEEI 37
>ref|NP_777027.1| solute carrier family 2, facilitated glucose transporter member 1
[Bos taurus].
Length = 492
Score = 68.9 bits (167), Expect = 2e-11
Identities = 34/55 (61%), Positives = 42/55 (76%)
Frame = +3
Query: 762 QIIKDFLNNTLREKSKSMPSEVLLTSLWSLSVAIFSVGGMIGSFSVGLFVNKFGR 926
++I++F N T ++ LT+LWSLSVAIFSVGGMIGSFSVGLFVN+FGR
Sbjct: 38 KVIEEFYNQTWVQRYGEPIPPATLTTLWSLSVAIFSVGGMIGSFSVGLFVNRFGR 92
>ref|NP_001094512.1| solute carrier family 2, facilitated glucose transporter member 5
[Bos taurus].
Length = 501
Score = 50.4 bits (119), Expect = 6e-06
Identities = 24/56 (42%), Positives = 34/56 (60%)
Frame = +3
Query: 759 SQIIKDFLNNTLREKSKSMPSEVLLTSLWSLSVAIFSVGGMIGSFSVGLFVNKFGR 926
S+ +KDF N T ++ +E LT LWS++V++F GG +GS VG VN GR
Sbjct: 43 SEFMKDFYNYTYYDRVGEYMNEFYLTLLWSVTVSMFPFGGFLGSLMVGPLVNNLGR 98
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 62,659,911
Number of extensions: 1974301
Number of successful extensions: 4184
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4181
Number of HSP's successfully gapped: 6
Length of query: 694
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 585
Effective length of database: 14,074,782
Effective search space: 8233747470
Effective search space used: 8233747470
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LNG01_0023_A02
(2083 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003308.1| solute carrier family 2, facilitated glucose... 96 1e-19
Alignment gi|NP_001152798.1| solute carrier family 2 (facilitated glucose... 72 3e-12
Alignment gi|XP_546760.2| PREDICTED: similar to Solute carrier family 2, ... 54 6e-07
>ref|NP_001003308.1| solute carrier family 2, facilitated glucose transporter member 3
[Canis lupus familiaris].
Length = 495
Score = 95.9 bits (237), Expect = 1e-19
Identities = 47/54 (87%), Positives = 52/54 (96%)
Frame = +3
Query: 765 IIKDFLNNTLREKSKSMPSEVLLTSLWSLSVAIFSVGGMIGSFSVGLFVNKFGR 926
IIKDFLN TL EKS+++P+EVLLTSLWSLSVAIFSVGGMIGSFSVGLFVN+FGR
Sbjct: 37 IIKDFLNYTLEEKSENLPTEVLLTSLWSLSVAIFSVGGMIGSFSVGLFVNRFGR 90
Score = 64.3 bits (155), Expect = 4e-10
Identities = 29/37 (78%), Positives = 33/37 (89%)
Frame = +2
Query: 140 MGTAKVTTPLVFAITIATIGSFQFGYNTGVINAPEAV 250
MGT KVT L+FA++IATIGSFQFGYNTGVINAPE +
Sbjct: 1 MGTQKVTVSLIFALSIATIGSFQFGYNTGVINAPETI 37
>ref|NP_001152798.1| solute carrier family 2 (facilitated glucose transporter), member 1
[Canis lupus familiaris].
Length = 492
Score = 71.6 bits (174), Expect = 3e-12
Identities = 35/55 (63%), Positives = 43/55 (78%)
Frame = +3
Query: 762 QIIKDFLNNTLREKSKSMPSEVLLTSLWSLSVAIFSVGGMIGSFSVGLFVNKFGR 926
++I++F N T + + S LT+LWSLSVAIFSVGGMIGSFSVGLFVN+FGR
Sbjct: 38 KVIEEFYNQTWIHRYQESISPTTLTTLWSLSVAIFSVGGMIGSFSVGLFVNRFGR 92
>ref|XP_546760.2| PREDICTED: similar to Solute carrier family 2, facilitated glucose
transporter, member 5 (Glucose transporter type 5, small
intestine) (Fructose transporter) [Canis familiaris].
Length = 682
Score = 53.9 bits (128), Expect = 6e-07
Identities = 26/56 (46%), Positives = 37/56 (66%)
Frame = +3
Query: 759 SQIIKDFLNNTLREKSKSMPSEVLLTSLWSLSVAIFSVGGMIGSFSVGLFVNKFGR 926
++++K F N T E++ + +E LT LWS+SV++F GG IGS VG VNK GR
Sbjct: 43 AELMKAFYNETYFERNNNYINEFSLTLLWSVSVSMFPFGGFIGSLMVGPLVNKLGR 98
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 63,095,162
Number of extensions: 1563756
Number of successful extensions: 4207
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4207
Number of HSP's successfully gapped: 4
Length of query: 694
Length of database: 18,874,504
Length adjustment: 110
Effective length of query: 584
Effective length of database: 15,207,544
Effective search space: 8881205696
Effective search space used: 8881205696
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LNG01_0023_A02
(2083 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_008862.1| solute carrier family 2, facilitated glucose tr... 91 4e-18
Alignment gi|NP_703150.1| solute carrier family 2, facilitated glucose tr... 90 9e-18
Alignment gi|NP_006507.2| solute carrier family 2, facilitated glucose tr... 68 3e-11
>ref|NP_008862.1| solute carrier family 2, facilitated glucose transporter member 3
[Homo sapiens].
Length = 496
Score = 90.9 bits (224), Expect = 4e-18
Identities = 44/55 (80%), Positives = 50/55 (90%)
Frame = +3
Query: 762 QIIKDFLNNTLREKSKSMPSEVLLTSLWSLSVAIFSVGGMIGSFSVGLFVNKFGR 926
+IIK+F+N TL +K + PSEVLLTSLWSLSVAIFSVGGMIGSFSVGLFVN+FGR
Sbjct: 36 KIIKEFINKTLTDKGNAPPSEVLLTSLWSLSVAIFSVGGMIGSFSVGLFVNRFGR 90
Score = 65.5 bits (158), Expect = 2e-10
Identities = 30/37 (81%), Positives = 33/37 (89%)
Frame = +2
Query: 140 MGTAKVTTPLVFAITIATIGSFQFGYNTGVINAPEAV 250
MGT KVT L+FAIT+ATIGSFQFGYNTGVINAPE +
Sbjct: 1 MGTQKVTPALIFAITVATIGSFQFGYNTGVINAPEKI 37
>ref|NP_703150.1| solute carrier family 2, facilitated glucose transporter member 14
[Homo sapiens].
Length = 520
Score = 89.7 bits (221), Expect = 9e-18
Identities = 43/54 (79%), Positives = 50/54 (92%)
Frame = +3
Query: 765 IIKDFLNNTLREKSKSMPSEVLLTSLWSLSVAIFSVGGMIGSFSVGLFVNKFGR 926
IIK+F+N TL +K+ + PSEVLLT+LWSLSVAIFSVGGMIGSFSVGLFVN+FGR
Sbjct: 61 IIKEFINKTLTDKANAPPSEVLLTNLWSLSVAIFSVGGMIGSFSVGLFVNRFGR 114
Score = 59.3 bits (142), Expect = 1e-08
Identities = 27/35 (77%), Positives = 30/35 (85%)
Frame = +2
Query: 146 TAKVTTPLVFAITIATIGSFQFGYNTGVINAPEAV 250
T VT L+FAIT+ATIGSFQFGYNTGVINAPE +
Sbjct: 27 TLAVTPALIFAITVATIGSFQFGYNTGVINAPETI 61
>ref|NP_006507.2| solute carrier family 2, facilitated glucose transporter member 1
[Homo sapiens].
Length = 492
Score = 68.2 bits (165), Expect = 3e-11
Identities = 34/55 (61%), Positives = 41/55 (74%)
Frame = +3
Query: 762 QIIKDFLNNTLREKSKSMPSEVLLTSLWSLSVAIFSVGGMIGSFSVGLFVNKFGR 926
++I++F N T + LT+LWSLSVAIFSVGGMIGSFSVGLFVN+FGR
Sbjct: 38 KVIEEFYNQTWVHRYGESILPTTLTTLWSLSVAIFSVGGMIGSFSVGLFVNRFGR 92
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 61,743,263
Number of extensions: 1500483
Number of successful extensions: 4218
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4215
Number of HSP's successfully gapped: 5
Length of query: 694
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 584
Effective length of database: 14,671,124
Effective search space: 8567936416
Effective search space used: 8567936416
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LNG01_0023_A02
(2083 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035531.3| solute carrier family 2, facilitated glucose tr... 87 7e-17
Alignment gi|NP_035530.2| solute carrier family 2, facilitated glucose tr... 70 8e-12
Alignment gi|NP_001078998.1| solute carrier family 2, facilitated glucose... 54 5e-07
Alignment gi|NP_062715.2| solute carrier family 2, facilitated glucose tr... 52 2e-06
>ref|NP_035531.3| solute carrier family 2, facilitated glucose transporter member 3
[Mus musculus].
Length = 493
Score = 86.7 bits (213), Expect = 7e-17
Identities = 42/54 (77%), Positives = 48/54 (88%)
Frame = +3
Query: 765 IIKDFLNNTLREKSKSMPSEVLLTSLWSLSVAIFSVGGMIGSFSVGLFVNKFGR 926
I+KDFLN TL E+ + +PSE LLT+LWSL VAIFSVGGMIGSFSVGLFVN+FGR
Sbjct: 37 ILKDFLNYTLEERLEDLPSEGLLTALWSLCVAIFSVGGMIGSFSVGLFVNRFGR 90
Score = 66.2 bits (160), Expect = 9e-11
Identities = 30/37 (81%), Positives = 33/37 (89%)
Frame = +2
Query: 140 MGTAKVTTPLVFAITIATIGSFQFGYNTGVINAPEAV 250
MGT KVT LVFA+T+ATIGSFQFGYNTGVINAPE +
Sbjct: 1 MGTTKVTPSLVFAVTVATIGSFQFGYNTGVINAPETI 37
>ref|NP_035530.2| solute carrier family 2, facilitated glucose transporter member 1
[Mus musculus].
Length = 492
Score = 69.7 bits (169), Expect = 8e-12
Identities = 34/55 (61%), Positives = 41/55 (74%)
Frame = +3
Query: 762 QIIKDFLNNTLREKSKSMPSEVLLTSLWSLSVAIFSVGGMIGSFSVGLFVNKFGR 926
++I++F N T + LT+LWSLSVAIFSVGGMIGSFSVGLFVN+FGR
Sbjct: 38 KVIEEFYNQTWNHRYGEPIPSTTLTTLWSLSVAIFSVGGMIGSFSVGLFVNRFGR 92
>ref|NP_001078998.1| solute carrier family 2, facilitated glucose transporter member 7
[Mus musculus].
Length = 525
Score = 53.9 bits (128), Expect = 5e-07
Identities = 25/55 (45%), Positives = 37/55 (67%)
Frame = +3
Query: 762 QIIKDFLNNTLREKSKSMPSEVLLTSLWSLSVAIFSVGGMIGSFSVGLFVNKFGR 926
Q++K F N+T E+ + E L LWS +V++F +GG++GS VGL VNK+GR
Sbjct: 62 QVLKSFYNDTHFERHGTFMDESTLLLLWSCTVSMFPLGGLLGSLVVGLMVNKWGR 116
>ref|NP_062715.2| solute carrier family 2, facilitated glucose transporter member 5
[Mus musculus].
Length = 501
Score = 51.6 bits (122), Expect = 2e-06
Identities = 24/56 (42%), Positives = 35/56 (62%)
Frame = +3
Query: 759 SQIIKDFLNNTLREKSKSMPSEVLLTSLWSLSVAIFSVGGMIGSFSVGLFVNKFGR 926
S+ ++ F N+T ++++ LT LWSL+V++F GG IGS VG VNK GR
Sbjct: 42 SEFMQQFYNDTYYDRNEENIESFTLTLLWSLTVSMFPFGGFIGSLMVGTLVNKLGR 97
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 52,523,638
Number of extensions: 1287882
Number of successful extensions: 3505
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3501
Number of HSP's successfully gapped: 5
Length of query: 694
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 586
Effective length of database: 12,373,671
Effective search space: 7250971206
Effective search space used: 7250971206
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LNG01_0023_A02
(2083 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003356190.1| PREDICTED: solute carrier family 2, facilita... 50 5e-06
>ref|XP_003356190.1| PREDICTED: solute carrier family 2, facilitated glucose transporter
member 7-like [Sus scrofa].
Length = 473
Score = 50.1 bits (118), Expect = 5e-06
Identities = 21/55 (38%), Positives = 36/55 (65%)
Frame = +3
Query: 762 QIIKDFLNNTLREKSKSMPSEVLLTSLWSLSVAIFSVGGMIGSFSVGLFVNKFGR 926
+++K F N T E+ + E ++ LWS +V++F +GG++GS VGL V++ GR
Sbjct: 47 KVLKSFYNETFFERHGTFMDEKVMLLLWSCTVSVFPLGGLVGSLVVGLLVDRCGR 101
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 44,768,872
Number of extensions: 2014831
Number of successful extensions: 2621
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2620
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 588
Effective length of database: 8,704,850
Effective search space: 5118451800
Effective search space used: 5118451800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LNG01_0023_A02
(2083 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 2296 0.0
Sscrofa_Chr06 62 1e-06
>Sscrofa_Chr05
|| Length = 111506441
Score = 2296 bits (1158), Expect = 0.0
Identities = 1174/1178 (99%), Gaps = 1/1178 (0%)
Strand = Plus / Plus
Query: 153 aggtcactacacctctggtctttgccatcacgattgctacaataggctctttccagtttg 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65800938 aggtcactacacctctggtctttgccatcacgattgctacaataggctctttccagtttg 65800997
Query: 213 gctacaacactggagtcatcaatgctcctgaggcggtgagtgccaggcaactagagtcag 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65800998 gctacaacactggagtcatcaatgctcctgaggcggtgagtgccaggcaactagagtcag 65801057
Query: 273 agtttggactagggaaagtattcctttaggtctggtttccagaattaacaagtttagaca 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65801058 agtttggactagggaaagtattcctttaggtctggtttccagaattaacaagtttagaca 65801117
Query: 333 aacttggtatctcgcttggcaaagactggggcgggggaagatattggtggagtctaggtg 392
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65801118 aacttggtacctcgcttggcaaagactggggcgggggaagatattggtggagtctaggtg 65801177
Query: 393 ctcccggtaccctggactgtatcatcccttcttcctctcatcctgtgaggggtgacacac 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65801178 ctcccggtaccctggactgtatcatcccttcttcctctcatcctgtgaggggtgacacac 65801237
Query: 453 ttcccttattatcccttaggcgttagtcacaaagtcaccagctggtgggggagggctggg 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65801238 ttcccttattatcccttaggcgttagtcacaaagtcaccagctggtgggggagggctggg 65801297
Query: 513 gtagtcactgaacttcagtactaccacctactggcattttcaggacaataaaaaattgtt 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65801298 gtagtcactgaacttcagtactaccacctactggcattttcaggacaataaaaaattgtt 65801357
Query: 573 cttttccaagctggtaacattaacttcagtgttatctgcctctttccttactatcgattc 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65801358 cttttccaagctggtaacattaacttcagtgttatctgcctctttccttactatcgattc 65801417
Query: 633 attcccttgattgtttacctgtgaagtaactaatgctgttgttttagggagaggaagagc 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65801418 attcccttgattgtttacctgtgaagtaactaatgctgttgttttagggagaggaagagc 65801477
Query: 693 cccaatgcttgtctcttttctcatccaattgtaacagtcgtctgttctcccaccacccat 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65801478 cccaatgcttgtctcttttctcatccaattgtaacagtcgtctgttctcccaccacccat 65801537
Query: 753 tttgattcacagatcataaaggactttctcaacaacactttgagagagaagtcaaaaagc 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65801538 tttgattcacagatcataaaggactttctcaacaacactttgagagagaagtcaaaaagc 65801597
Query: 813 atgccctctgaggtgttactcacgtccctgtggtccttgtctgtggccatattctccgtt 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65801598 atgccctctgaggtgttactcacgtccctgtggtccttgtctgtggccatattctccgtt 65801657
Query: 873 ggtggtatgattggctccttttccgttggactctttgtcaacaagtttggcaggtattga 932
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 65801658 ggtggtatgattggctccttttccgttggactctttgtcaacaggtttggcaggtattga 65801717
Query: 933 ccagacactgggcaaggaaggggggctgtcgtggttgtagtgggggcaagtgttgagact 992
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 65801718 ccagacactgggcaaggaatgggggctgtcgtggttgtagtgggggcaagtgttgagact 65801777
Query: 993 tagagcaggggggtgatgatgcatttgaatgagagcaccacaaattctgatcaagggaaa 1052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65801778 tagagcaggggggtgatgatgcatttgaatgagagcaccacaaattctgatcaagggaaa 65801837
Query: 1053 gctcgtccaaagctcagcgtgactgccttgcttggagctctcctacccctcccgcgatgg 1112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65801838 gctcgtccaaagctcagcgtgactgccttgcttggagctctcctacccctcccgcgatgg 65801897
Query: 1113 ccttgtgaatgatgggtctgtctgttcagtccaacccaattcagttattctctgggaaag 1172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65801898 ccttgtgaatgatgggtctgtctgttcagtccaacccaattcagttattctctgggaaag 65801957
Query: 1173 cccatggtggcgtttccccagaaacgtactttatttacgaggtcaaaagcttttattaca 1232
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 65801958 cccatggtggcgtttccccagaaacgtactttatttacgaggtc-aaagcttttattaca 65802016
Query: 1233 gtttcggcggggggtaggagtgtttatgcaagtcatttcataatttttacaccgcaggat 1292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65802017 gtttcggcggggggtaggagtgtttatgcaagtcatttcataatttttacaccgcaggat 65802076
Query: 1293 tgggaggagatattttataatccttggtctctgggcaa 1330
||||||||||||||||||||||||||||||||||||||
Sbjct: 65802077 tgggaggagatattttataatccttggtctctgggcaa 65802114
Score = 240 bits (121), Expect = 3e-60
Identities = 121/121 (100%)
Strand = Plus / Plus
Query: 1448 ccactcaagtcagagtcatggtcaagtatcaggatgctgatcctccaacatctgccagag 1507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65802231 ccactcaagtcagagtcatggtcaagtatcaggatgctgatcctccaacatctgccagag 65802290
Query: 1508 tttttaagtttctaagcaactacattgtaacaagatgcaataagtttaaaaaaaagaatc 1567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65802291 tttttaagtttctaagcaactacattgtaacaagatgcaataagtttaaaaaaaagaatc 65802350
Query: 1568 a 1568
|
Sbjct: 65802351 a 65802351
Score = 127 bits (64), Expect = 3e-26
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 1840 gaatcagcactggtctgaatttctctggagtgtgttcttggaagggctactcagaattgc 1899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65802623 gaatcagcactggtctgaatttctctggagtgtgttcttggaagggctactcagaattgc 65802682
Query: 1900 ctct 1903
||||
Sbjct: 65802683 ctct 65802686
>Sscrofa_Chr06
|| Length = 157765593
Score = 61.9 bits (31), Expect = 1e-06
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 206 cagtttggctacaacactggagtcatcaatgctcc 240
|||||||||||||| ||||||||||||||||||||
Sbjct: 155975114 cagtttggctacaatactggagtcatcaatgctcc 155975148
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 50,785,816
Number of extensions: 292
Number of successful extensions: 292
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 291
Number of HSP's successfully gapped: 4
Length of query: 2083
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2061
Effective length of database: 2,808,408,574
Effective search space: 5788130071014
Effective search space used: 5788130071014
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)