Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LNG01_0025_E01
(1695 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001009186.1| T-complex protein 1 subunit zeta isoform b [... 112 1e-24
Alignment gi|NP_001753.1| T-complex protein 1 subunit zeta isoform a [Hom... 112 1e-24
Alignment gi|NP_001180459.1| T-complex protein 1 subunit zeta-2 isoform 3... 97 6e-20
Alignment gi|NP_001180458.1| T-complex protein 1 subunit zeta-2 isoform 2... 97 6e-20
Alignment gi|NP_006575.2| T-complex protein 1 subunit zeta-2 isoform 1 [H... 97 6e-20
>ref|NP_001009186.1| T-complex protein 1 subunit zeta isoform b [Homo sapiens].
Length = 486
Score = 112 bits (279), Expect = 1e-24
Identities = 57/61 (93%), Positives = 59/61 (96%)
Frame = +2
Query: 794 GLHPRIITEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVHAELADVLTEVC 973
GLHPRIITEGFEAAKEKALQFLE+VKVS+EMDRETLIDVARTSLRTKVHAELADVLTE
Sbjct: 68 GLHPRIITEGFEAAKEKALQFLEEVKVSREMDRETLIDVARTSLRTKVHAELADVLTEAV 127
Query: 974 V 976
V
Sbjct: 128 V 128
>ref|NP_001753.1| T-complex protein 1 subunit zeta isoform a [Homo sapiens].
Length = 531
Score = 112 bits (279), Expect = 1e-24
Identities = 57/61 (93%), Positives = 59/61 (96%)
Frame = +2
Query: 794 GLHPRIITEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVHAELADVLTEVC 973
GLHPRIITEGFEAAKEKALQFLE+VKVS+EMDRETLIDVARTSLRTKVHAELADVLTE
Sbjct: 113 GLHPRIITEGFEAAKEKALQFLEEVKVSREMDRETLIDVARTSLRTKVHAELADVLTEAV 172
Query: 974 V 976
V
Sbjct: 173 V 173
>ref|NP_001180459.1| T-complex protein 1 subunit zeta-2 isoform 3 [Homo sapiens].
Length = 485
Score = 96.7 bits (239), Expect = 6e-20
Identities = 52/80 (65%), Positives = 63/80 (78%)
Frame = +2
Query: 794 GLHPRIITEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVHAELADVLTEVC 973
GLHPRII EGFEAAK KAL+ LE+VKV+KEM R+ L+DVARTSL+TKVHAELADVLTEV
Sbjct: 68 GLHPRIIAEGFEAAKIKALEVLEEVKVTKEMKRKILLDVARTSLQTKVHAELADVLTEVV 127
Query: 974 VRCGVCLVQYTYTEDPWQLE 1033
V + + + Y D + +E
Sbjct: 128 VDSVLAVRRPGYPIDLFMVE 147
>ref|NP_001180458.1| T-complex protein 1 subunit zeta-2 isoform 2 [Homo sapiens].
Length = 493
Score = 96.7 bits (239), Expect = 6e-20
Identities = 52/80 (65%), Positives = 63/80 (78%)
Frame = +2
Query: 794 GLHPRIITEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVHAELADVLTEVC 973
GLHPRII EGFEAAK KAL+ LE+VKV+KEM R+ L+DVARTSL+TKVHAELADVLTEV
Sbjct: 113 GLHPRIIAEGFEAAKIKALEVLEEVKVTKEMKRKILLDVARTSLQTKVHAELADVLTEVV 172
Query: 974 VRCGVCLVQYTYTEDPWQLE 1033
V + + + Y D + +E
Sbjct: 173 VDSVLAVRRPGYPIDLFMVE 192
>ref|NP_006575.2| T-complex protein 1 subunit zeta-2 isoform 1 [Homo sapiens].
Length = 530
Score = 96.7 bits (239), Expect = 6e-20
Identities = 52/80 (65%), Positives = 63/80 (78%)
Frame = +2
Query: 794 GLHPRIITEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVHAELADVLTEVC 973
GLHPRII EGFEAAK KAL+ LE+VKV+KEM R+ L+DVARTSL+TKVHAELADVLTEV
Sbjct: 113 GLHPRIIAEGFEAAKIKALEVLEEVKVTKEMKRKILLDVARTSLQTKVHAELADVLTEVV 172
Query: 974 VRCGVCLVQYTYTEDPWQLE 1033
V + + + Y D + +E
Sbjct: 173 VDSVLAVRRPGYPIDLFMVE 192
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 26,336,522
Number of extensions: 558476
Number of successful extensions: 1193
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1193
Number of HSP's successfully gapped: 5
Length of query: 565
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 457
Effective length of database: 14,737,052
Effective search space: 6734832764
Effective search space used: 6734832764
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LNG01_0025_E01
(1695 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_853780.1| PREDICTED: similar to T-complex protein 1, zeta... 114 3e-25
Alignment gi|XP_856003.1| PREDICTED: similar to T-complex protein 1, zeta... 114 3e-25
Alignment gi|XP_855959.1| PREDICTED: similar to T-complex protein 1, zeta... 114 3e-25
Alignment gi|XP_848355.1| PREDICTED: similar to T-complex protein 1, zeta... 114 3e-25
Alignment gi|XP_855873.1| PREDICTED: similar to T-complex protein 1, zeta... 114 3e-25
Alignment gi|XP_867909.1| PREDICTED: similar to chaperonin containing TCP... 95 2e-19
Alignment gi|XP_548266.2| PREDICTED: similar to chaperonin containing TCP... 95 2e-19
Alignment gi|XP_855106.1| PREDICTED: similar to chaperonin containing TCP... 52 2e-06
>ref|XP_853780.1| PREDICTED: similar to T-complex protein 1, zeta subunit
(TCP-1-zeta) (CCT-zeta) (CCT-zeta-1) [Canis familiaris].
Length = 514
Score = 114 bits (285), Expect = 3e-25
Identities = 59/61 (96%), Positives = 59/61 (96%)
Frame = +2
Query: 794 GLHPRIITEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVHAELADVLTEVC 973
GLHPRIITEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVHAELADVLTE
Sbjct: 148 GLHPRIITEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVHAELADVLTEAV 207
Query: 974 V 976
V
Sbjct: 208 V 208
>ref|XP_856003.1| PREDICTED: similar to T-complex protein 1, zeta subunit
(TCP-1-zeta) (CCT-zeta) (CCT-zeta-1) isoform 4 [Canis
familiaris].
Length = 450
Score = 114 bits (285), Expect = 3e-25
Identities = 59/61 (96%), Positives = 59/61 (96%)
Frame = +2
Query: 794 GLHPRIITEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVHAELADVLTEVC 973
GLHPRIITEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVHAELADVLTE
Sbjct: 113 GLHPRIITEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVHAELADVLTEAV 172
Query: 974 V 976
V
Sbjct: 173 V 173
>ref|XP_855959.1| PREDICTED: similar to T-complex protein 1, zeta subunit
(TCP-1-zeta) (CCT-zeta) (CCT-zeta-1) isoform 3 [Canis
familiaris].
Length = 439
Score = 114 bits (285), Expect = 3e-25
Identities = 59/61 (96%), Positives = 59/61 (96%)
Frame = +2
Query: 794 GLHPRIITEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVHAELADVLTEVC 973
GLHPRIITEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVHAELADVLTE
Sbjct: 113 GLHPRIITEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVHAELADVLTEAV 172
Query: 974 V 976
V
Sbjct: 173 V 173
>ref|XP_848355.1| PREDICTED: similar to T-complex protein 1, zeta subunit
(TCP-1-zeta) (CCT-zeta) (CCT-zeta-1) isoform 1 [Canis
familiaris].
Length = 450
Score = 114 bits (285), Expect = 3e-25
Identities = 59/61 (96%), Positives = 59/61 (96%)
Frame = +2
Query: 794 GLHPRIITEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVHAELADVLTEVC 973
GLHPRIITEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVHAELADVLTE
Sbjct: 113 GLHPRIITEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVHAELADVLTEAV 172
Query: 974 V 976
V
Sbjct: 173 V 173
>ref|XP_855873.1| PREDICTED: similar to T-complex protein 1, zeta subunit
(TCP-1-zeta) (CCT-zeta) (CCT-zeta-1) isoform 2 [Canis
familiaris].
Length = 325
Score = 114 bits (285), Expect = 3e-25
Identities = 59/61 (96%), Positives = 59/61 (96%)
Frame = +2
Query: 794 GLHPRIITEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVHAELADVLTEVC 973
GLHPRIITEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVHAELADVLTE
Sbjct: 113 GLHPRIITEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVHAELADVLTEAV 172
Query: 974 V 976
V
Sbjct: 173 V 173
>ref|XP_867909.1| PREDICTED: similar to chaperonin containing TCP1, subunit 6B isoform
2 [Canis familiaris].
Length = 486
Score = 94.7 bits (234), Expect = 2e-19
Identities = 51/80 (63%), Positives = 61/80 (76%)
Frame = +2
Query: 794 GLHPRIITEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVHAELADVLTEVC 973
GLHPRII EGFEAAK KAL+ LE+VKV+KEM RE L+DVARTSL+TKVHAELADVL E
Sbjct: 68 GLHPRIIAEGFEAAKIKALEVLEEVKVNKEMKREILLDVARTSLQTKVHAELADVLIEAV 127
Query: 974 VRCGVCLVQYTYTEDPWQLE 1033
V + + + Y D + +E
Sbjct: 128 VDSVLAIRRPGYPIDLFMVE 147
>ref|XP_548266.2| PREDICTED: similar to chaperonin containing TCP1, subunit 6B isoform
1 [Canis familiaris].
Length = 531
Score = 94.7 bits (234), Expect = 2e-19
Identities = 51/80 (63%), Positives = 61/80 (76%)
Frame = +2
Query: 794 GLHPRIITEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVHAELADVLTEVC 973
GLHPRII EGFEAAK KAL+ LE+VKV+KEM RE L+DVARTSL+TKVHAELADVL E
Sbjct: 113 GLHPRIIAEGFEAAKIKALEVLEEVKVNKEMKREILLDVARTSLQTKVHAELADVLIEAV 172
Query: 974 VRCGVCLVQYTYTEDPWQLE 1033
V + + + Y D + +E
Sbjct: 173 VDSVLAIRRPGYPIDLFMVE 192
>ref|XP_855106.1| PREDICTED: similar to chaperonin containing TCP1, subunit 6B [Canis
familiaris].
Length = 457
Score = 52.0 bits (123), Expect = 2e-06
Identities = 25/26 (96%), Positives = 25/26 (96%)
Frame = +2
Query: 794 GLHPRIITEGFEAAKEKALQFLEQVK 871
GLHPRIITEGFEAAKEKA QFLEQVK
Sbjct: 132 GLHPRIITEGFEAAKEKAPQFLEQVK 157
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 26,928,957
Number of extensions: 621133
Number of successful extensions: 1202
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 1202
Number of HSP's successfully gapped: 8
Length of query: 565
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 457
Effective length of database: 15,274,216
Effective search space: 6980316712
Effective search space used: 6980316712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LNG01_0025_E01
(1695 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029714.1| T-complex protein 1 subunit zeta [Bos taurus]. 114 3e-25
Alignment gi|NP_001029814.1| T-complex protein 1 subunit zeta-2 [Bos taur... 91 4e-18
>ref|NP_001029714.1| T-complex protein 1 subunit zeta [Bos taurus].
Length = 531
Score = 114 bits (285), Expect = 3e-25
Identities = 59/61 (96%), Positives = 59/61 (96%)
Frame = +2
Query: 794 GLHPRIITEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVHAELADVLTEVC 973
GLHPRIITEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVHAELADVLTE
Sbjct: 113 GLHPRIITEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVHAELADVLTEAV 172
Query: 974 V 976
V
Sbjct: 173 V 173
>ref|NP_001029814.1| T-complex protein 1 subunit zeta-2 [Bos taurus].
Length = 531
Score = 90.5 bits (223), Expect = 4e-18
Identities = 48/80 (60%), Positives = 58/80 (72%)
Frame = +2
Query: 794 GLHPRIITEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVHAELADVLTEVC 973
GLHPRII EGFE AK KAL+ LEQVK+ KEM RE +DVARTSL+TKVH +LADVLTE
Sbjct: 113 GLHPRIIAEGFEIAKIKALEVLEQVKIKKEMKREIHLDVARTSLQTKVHPQLADVLTEAV 172
Query: 974 VRCGVCLVQYTYTEDPWQLE 1033
V + + + Y D + +E
Sbjct: 173 VDSVLAIRRPNYPIDLFMVE 192
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 30,373,441
Number of extensions: 1482292
Number of successful extensions: 1158
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1158
Number of HSP's successfully gapped: 2
Length of query: 565
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 457
Effective length of database: 14,107,870
Effective search space: 6447296590
Effective search space used: 6447296590
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LNG01_0025_E01
(1695 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033968.1| T-complex protein 1 subunit zeta [Mus musculus]. 114 2e-25
Alignment gi|NP_033969.2| T-complex protein 1 subunit zeta-2 [Mus musculu... 94 4e-19
>ref|NP_033968.1| T-complex protein 1 subunit zeta [Mus musculus].
Length = 531
Score = 114 bits (285), Expect = 2e-25
Identities = 59/61 (96%), Positives = 59/61 (96%)
Frame = +2
Query: 794 GLHPRIITEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVHAELADVLTEVC 973
GLHPRIITEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVHAELADVLTE
Sbjct: 113 GLHPRIITEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVHAELADVLTEAV 172
Query: 974 V 976
V
Sbjct: 173 V 173
>ref|NP_033969.2| T-complex protein 1 subunit zeta-2 [Mus musculus].
Length = 531
Score = 93.6 bits (231), Expect = 4e-19
Identities = 45/61 (73%), Positives = 53/61 (86%)
Frame = +2
Query: 794 GLHPRIITEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVHAELADVLTEVC 973
GLHPRIITEGF+ AK KAL+ L+++KV KEM RE L+DVARTSL+TKVHAELAD+LTE
Sbjct: 113 GLHPRIITEGFDVAKTKALEVLDEIKVQKEMKREILLDVARTSLQTKVHAELADILTEAV 172
Query: 974 V 976
V
Sbjct: 173 V 173
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 22,973,501
Number of extensions: 529440
Number of successful extensions: 1039
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1039
Number of HSP's successfully gapped: 2
Length of query: 565
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 458
Effective length of database: 12,403,707
Effective search space: 5680897806
Effective search space used: 5680897806
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LNG01_0025_E01
(1695 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003354568.1| PREDICTED: t-complex protein 1 subunit zeta-... 114 2e-25
Alignment gi|XP_003354567.1| PREDICTED: t-complex protein 1 subunit zeta-... 114 2e-25
Alignment gi|XP_003124509.2| PREDICTED: t-complex protein 1 subunit zeta-... 114 2e-25
>ref|XP_003354568.1| PREDICTED: t-complex protein 1 subunit zeta-like isoform 3 [Sus
scrofa].
Length = 486
Score = 114 bits (285), Expect = 2e-25
Identities = 59/61 (96%), Positives = 59/61 (96%)
Frame = +2
Query: 794 GLHPRIITEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVHAELADVLTEVC 973
GLHPRIITEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVHAELADVLTE
Sbjct: 68 GLHPRIITEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVHAELADVLTEAV 127
Query: 974 V 976
V
Sbjct: 128 V 128
>ref|XP_003354567.1| PREDICTED: t-complex protein 1 subunit zeta-like isoform 2 [Sus
scrofa].
Length = 494
Score = 114 bits (285), Expect = 2e-25
Identities = 59/61 (96%), Positives = 59/61 (96%)
Frame = +2
Query: 794 GLHPRIITEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVHAELADVLTEVC 973
GLHPRIITEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVHAELADVLTE
Sbjct: 113 GLHPRIITEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVHAELADVLTEAV 172
Query: 974 V 976
V
Sbjct: 173 V 173
>ref|XP_003124509.2| PREDICTED: t-complex protein 1 subunit zeta-like isoform 1 [Sus
scrofa].
Length = 531
Score = 114 bits (285), Expect = 2e-25
Identities = 59/61 (96%), Positives = 59/61 (96%)
Frame = +2
Query: 794 GLHPRIITEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVHAELADVLTEVC 973
GLHPRIITEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVHAELADVLTE
Sbjct: 113 GLHPRIITEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVHAELADVLTEAV 172
Query: 974 V 976
V
Sbjct: 173 V 173
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,564,106
Number of extensions: 2361732
Number of successful extensions: 738
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 738
Number of HSP's successfully gapped: 3
Length of query: 565
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 461
Effective length of database: 8,754,644
Effective search space: 4035890884
Effective search space used: 4035890884
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LNG01_0025_E01
(1695 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 979 0.0
Sscrofa_ChrX 268 9e-69
Sscrofa_Chr15 168 6e-39
Sscrofa_Chr05 121 1e-24
Sscrofa_Chr12 84 3e-13
>Sscrofa_Chr03
|| Length = 144787322
Score = 979 bits (494), Expect = 0.0
Identities = 494/494 (100%)
Strand = Plus / Plus
Query: 664 ccaagaaggttatgaatgagccagaatatcccttcatagatttgttctattatgatctgt 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17185378 ccaagaaggttatgaatgagccagaatatcccttcatagatttgttctattatgatctgt 17185437
Query: 724 cgttacagctaacagaagatctctactgtcagggggatcttcattgtttgtaattgggtg 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17185438 cgttacagctaacagaagatctctactgtcagggggatcttcattgtttgtaattgggtg 17185497
Query: 784 tttattatagggtcttcatcccagaataataacagaaggatttgaagctgcaaaggaaaa 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17185498 tttattatagggtcttcatcccagaataataacagaaggatttgaagctgcaaaggaaaa 17185557
Query: 844 ggcacttcagtttttggaacaagttaaagtaagcaaagagatggacagggaaacgcttat 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17185558 ggcacttcagtttttggaacaagttaaagtaagcaaagagatggacagggaaacgcttat 17185617
Query: 904 agacgtggccagaacatctctacgtactaaagttcatgctgaacttgctgatgtcttaac 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17185618 agacgtggccagaacatctctacgtactaaagttcatgctgaacttgctgatgtcttaac 17185677
Query: 964 agaggtatgtgttagatgtggtgtgtgtctggtacagtacacctatactgaagacccctg 1023
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17185678 agaggtatgtgttagatgtggtgtgtgtctggtacagtacacctatactgaagacccctg 17185737
Query: 1024 gcaactggaaccatccgtattcttacaaattccaattaaagagtgctatctaaagtcgtc 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17185738 gcaactggaaccatccgtattcttacaaattccaattaaagagtgctatctaaagtcgtc 17185797
Query: 1084 acatactgtgtgaaataaataggttcgtttttgtggcagtgataacctgatctctgtccc 1143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17185798 acatactgtgtgaaataaataggttcgtttttgtggcagtgataacctgatctctgtccc 17185857
Query: 1144 taaaagtaaagtga 1157
||||||||||||||
Sbjct: 17185858 taaaagtaaagtga 17185871
Score = 527 bits (266), Expect = e-147
Identities = 266/266 (100%)
Strand = Plus / Plus
Query: 1 aaatgatatggattaatttcagattaccgatagaaaagggaatggtcctcttgactgaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17184716 aaatgatatggattaatttcagattaccgatagaaaagggaatggtcctcttgactgaag 17184775
Query: 61 attgttgacagagttttgcattttgggcattatcccttgtggcttgcacagtgaacaccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17184776 attgttgacagagttttgcattttgggcattatcccttgtggcttgcacagtgaacaccc 17184835
Query: 121 aagtgtgctttatatagttcccttggctttgactctgtgctagagcaatgtctgttctct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17184836 aagtgtgctttatatagttcccttggctttgactctgtgctagagcaatgtctgttctct 17184895
Query: 181 tcctctgcattgaaaggttcattatccttttaaatgtattcagaaagtcagcacattgta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17184896 tcctctgcattgaaaggttcattatccttttaaatgtattcagaaagtcagcacattgta 17184955
Query: 241 ttaattgtgtctgagggtatgaatga 266
||||||||||||||||||||||||||
Sbjct: 17184956 ttaattgtgtctgagggtatgaatga 17184981
Score = 63.9 bits (32), Expect = 3e-07
Identities = 75/88 (85%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 781 gtgtttatta-tagggtcttcatcccagaataataacagaaggatttgaagctgcaaagg 839
|||||||||| |||| |||| || ||||||||||| |||||| ||||||| ||||||
Sbjct: 23601494 gtgtttattaataggctctttgtctcagaataataatggaaggagctgaagctacaaagg 23601553
Query: 840 aaaaggcacttcagtttttggaacaagt 867
|||||||||||||| || |||||||||
Sbjct: 23601554 aaaaggcacttcagcttggggaacaagt 23601581
Score = 60.0 bits (30), Expect = 4e-06
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 145 ggctttgactctgtgctagagcaatgtctgttctcttcctct 186
|||| ||||||||||||||||| ||||||||||| |||||||
Sbjct: 23601282 ggctctgactctgtgctagagccatgtctgttcttttcctct 23601323
>Sscrofa_ChrX
|| Length = 144288218
Score = 268 bits (135), Expect = 9e-69
Identities = 165/175 (94%)
Strand = Plus / Plus
Query: 794 ggtcttcatcccagaataataacagaaggatttgaagctgcaaaggaaaaggcacttcag 853
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 53168863 ggtcttcatcccagaataataacagaaggatttgaaactgcaaaggaaaaggactttcag 53168922
Query: 854 tttttggaacaagttaaagtaagcaaagagatggacagggaaacgcttatagacgtggcc 913
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 53168923 tttttggaacaagttaaagtaagcaaagagatggacagggaaatgcttatagatgtggcc 53168982
Query: 914 agaacatctctacgtactaaagttcatgctgaacttgctgatgtcttaacagagg 968
|||||| ||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 53168983 agaacacctctatgtactaaagttcatgccaaacttgctgatgtcttaacagagg 53169037
>Sscrofa_Chr15
|| Length = 157681621
Score = 168 bits (85), Expect = 6e-39
Identities = 145/165 (87%)
Strand = Plus / Plus
Query: 794 ggtcttcatcccagaataataacagaaggatttgaagctgcaaaggaaaaggcacttcag 853
||||||||||| ||||||||||||||||||| |||| |||| ||||||||| |||||| |
Sbjct: 17511478 ggtcttcatccaagaataataacagaaggatgtgaaactgccaaggaaaagacacttcgg 17511537
Query: 854 tttttggaacaagttaaagtaagcaaagagatggacagggaaacgcttatagacgtggcc 913
|||||||||||||| ||||||||||||||| || |||||||||| |||| ||| ||| |
Sbjct: 17511538 tttttggaacaagtcaaagtaagcaaagaggtgaacagggaaacacttacagatgtgtct 17511597
Query: 914 agaacatctctacgtactaaagttcatgctgaacttgctgatgtc 958
|||||||||| | | ||||||||||| ||||||||||||||||
Sbjct: 17511598 ggaacatctctccacagtaaagttcatgatgaacttgctgatgtc 17511642
>Sscrofa_Chr05
|| Length = 111506441
Score = 121 bits (61), Expect = 1e-24
Identities = 131/152 (86%), Gaps = 3/152 (1%)
Strand = Plus / Plus
Query: 770 tttgtaattgggtgtttattat-agggtcttcatcccagaataataacagaaggatttga 828
||||| |||| ||||||||||| ||||||||||||||||||||||||||| |||| | |
Sbjct: 62968228 tttgtgattgtgtgtttattattagggtcttcatcccagaataataacaggaggactgaa 62968287
Query: 829 agctgcaaaggaaaaggcacttcagtttt--tggaacaagttaaagtaagcaaagagatg 886
| |||||||||||||||||||||||||| |||||||||| ||| || |||| |||
Sbjct: 62968288 aattgcaaaggaaaaggcacttcagtttttgtggaacaagtaaaaagtagtgaagaaatg 62968347
Query: 887 gacagggaaacgcttatagacgtggccagaac 918
|||| |||||| |||||||| |||||||||||
Sbjct: 62968348 gacaaggaaacacttatagatgtggccagaac 62968379
Score = 77.8 bits (39), Expect = 2e-11
Identities = 94/111 (84%), Gaps = 1/111 (0%)
Strand = Plus / Plus
Query: 133 tatagttcccttggctttgactctgtgctagagcaatgtctgttctcttcctctgcattg 192
||||||| ||||||||||||| |||||||| |||||| |||||||| |||| |||| ||
Sbjct: 62968003 tatagtttccttggctttgacactgtgctaaagcaatttctgttcttttcccatgcactg 62968062
Query: 193 aaagg-ttcattatccttttaaatgtattcagaaagtcagcacattgtatt 242
|| || | | ||||| ||||||||||||||||||| |||||||| ||||
Sbjct: 62968063 aagggaattttcatcctcttaaatgtattcagaaagttagcacattatatt 62968113
>Sscrofa_Chr12
|| Length = 63588571
Score = 83.8 bits (42), Expect = 3e-13
Identities = 135/166 (81%)
Strand = Plus / Minus
Query: 809 ataataacagaaggatttgaagctgcaaaggaaaaggcacttcagtttttggaacaagtt 868
|||||| | |||||||||||||||||||| |||||||||| | ||||||| |||||
Sbjct: 41725646 ataatagctgaaggatttgaagctgcaaaaataaaggcacttgaagttttggacgaagtt 41725587
Query: 869 aaagtaagcaaagagatggacagggaaacgcttatagacgtggccagaacatctctacgt 928
||| | | ||||||||| | || |||| || | || ||||| ||||||||||| |
Sbjct: 41725586 aaaattaaaaaagagatgaaaagagaaatcctctttgatgtggctagaacatctctgcaa 41725527
Query: 929 actaaagttcatgctgaacttgctgatgtcttaacagaggtatgtg 974
|||||||||||| ||||||| ||| |||| ||||||||||||||||
Sbjct: 41725526 actaaagttcatcctgaactggctaatgtattaacagaggtatgtg 41725481
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,184,380
Number of extensions: 167
Number of successful extensions: 167
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 9
Length of query: 1695
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1673
Effective length of database: 2,808,408,574
Effective search space: 4698467544302
Effective search space used: 4698467544302
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)