Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LNG01_0046_G07
(1774 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851455.1| PREDICTED: similar to CG16721-PA [Canis familia... 848 0.0
Alignment gi|XP_531761.2| PREDICTED: similar to CG16721-PA [Canis familia... 389 e-108
Alignment gi|XP_532117.2| PREDICTED: similar to t-complex 11 [Canis famil... 306 3e-83
Alignment gi|XP_852270.1| PREDICTED: similar to t-complex 11 protein [Can... 168 2e-41
>ref|XP_851455.1| PREDICTED: similar to CG16721-PA [Canis familiaris].
Length = 508
Score = 848 bits (2192), Expect = 0.0
Identities = 431/506 (85%), Positives = 461/506 (91%)
Frame = +1
Query: 73 MSENLDKSNINEAGKSKSNDSEQGLEDAVEGSDEALQKKIKSGSPSTQRVQRPHSSPPRF 252
MSEN DK NINEAGKSKSN SEQ LEDAVEGSDEALQK KSGSPST+RVQRPHSSPPRF
Sbjct: 1 MSENPDKPNINEAGKSKSNGSEQDLEDAVEGSDEALQKT-KSGSPSTRRVQRPHSSPPRF 59
Query: 253 VTVEELLETAKGVTNMALAHEIVVNGDFRIKPVELPEDSLEKRVKDIVHKAFWDCLSVQL 432
VTVEELLETAKGVTNMALAHEIVVNGDFRIKPVELPEDSLEKRVK+IVHKAFWDCLSVQL
Sbjct: 60 VTVEELLETAKGVTNMALAHEIVVNGDFRIKPVELPEDSLEKRVKEIVHKAFWDCLSVQL 119
Query: 433 SEDPPTYDRAIKLVGEIKETLLSFLLPGHTRLRNQITEVLDLDLIKQEAENGALDISKLA 612
SEDPPTYD AIKLVGEIKETLLSFLLPGHTRLRNQITEVLDLDLIKQEAENGALDISKLA
Sbjct: 120 SEDPPTYDHAIKLVGEIKETLLSFLLPGHTRLRNQITEVLDLDLIKQEAENGALDISKLA 179
Query: 613 EFIIGMMGTLCAPVRDEGVKKLKDIKEIVPLFRAIFSVLDMMKVDMANFAVSSIRPHLMQ 792
EFIIGMMGTLCAP RDE VKKLKDIKEIVPLFRAIFSVLD+MKVDMANFAV+SIRPHLMQ
Sbjct: 180 EFIIGMMGTLCAPARDEEVKKLKDIKEIVPLFRAIFSVLDLMKVDMANFAVTSIRPHLMQ 239
Query: 793 QSVEYERKQFQELLEKQPNSLDFVTQWLEEAADDLVNQRYRNALPXXXXXXXXXXXPRPD 972
QSVEYERK+FQ+LLEKQPNSLDFVTQWLEEAADDL+NQ+Y+NALP P P+
Sbjct: 240 QSVEYERKKFQQLLEKQPNSLDFVTQWLEEAADDLMNQKYKNALPAGGGATGSEDSPMPN 299
Query: 973 PAAVQNYAYLKLLKWDHLHRLFPETVLMDRSRFXXXXXXXXXXTVLGAVLLVTFSMAAPG 1152
P AVQNYAYLKLLKWDHL + FPETVLMD+ RF T+LGAVLLV+FSMAAPG
Sbjct: 300 PVAVQNYAYLKLLKWDHLQKPFPETVLMDQVRFQELQLQLEQLTILGAVLLVSFSMAAPG 359
Query: 1153 ISSRADFAEKLKMIVKILLTDMHQPSFHLEDALTAVGEKVCLEVSSCLSQCGFSPLTPDK 1332
ISS+ADFAEKLKMIVKILLTDMH PSFHL+DALT +GEKVCLEVSSCL+ CG +P T +K
Sbjct: 360 ISSQADFAEKLKMIVKILLTDMHLPSFHLKDALTTIGEKVCLEVSSCLALCGLTPFTAEK 419
Query: 1333 EAVLKGQIQAVASPDNPIRRIMDSRILTFLETHLASSHQKPLPTAPGGLGPVQKELEEVA 1512
EAVLKGQIQAVA+PD+PIRRIMDSRIL FLE++LA+ HQKP+PT PGGLGPVQ+ELEEVA
Sbjct: 420 EAVLKGQIQAVANPDDPIRRIMDSRILIFLESYLATGHQKPVPTVPGGLGPVQRELEEVA 479
Query: 1513 VKFVRLVNYNKMVFSPYYDAILSKIL 1590
+KFVRLVNYNK+VFSPYYD ILSK+L
Sbjct: 480 IKFVRLVNYNKLVFSPYYDVILSKVL 505
>ref|XP_531761.2| PREDICTED: similar to CG16721-PA [Canis familiaris].
Length = 518
Score = 389 bits (1000), Expect = e-108
Identities = 210/507 (41%), Positives = 310/507 (61%), Gaps = 1/507 (0%)
Frame = +1
Query: 73 MSENLDKSNINEAGKSKSNDSEQGLEDAVEGSDEALQKKIKSGSPSTQRVQRPHSSPPRF 252
M N +K + E S S DS + E SD ++ + S++ +SPPR
Sbjct: 1 MPFNGEKQCVGEDQPSDS-DSSRFSESMASLSDYECSRQSFTSDSSSKSSSPASTSPPRV 59
Query: 253 VTVEELLETAKGVTNMALAHEIVVNGDFRIKPVELPEDSLEKRVKDIVHKAFWDCLSVQL 432
VT +E++ A+ ++NM LAHEI VN +F++K LPE+SL RVK IVH+AFWD L +L
Sbjct: 60 VTFDEVMAAARNLSNMTLAHEIAVNENFQLKQDALPENSLASRVKHIVHRAFWDVLESEL 119
Query: 433 SEDPPTYDRAIKLVGEIKETLLSFLLPGHTRLRNQITEVLDLDLIKQEAENGALDISKLA 612
+ +PP Y+ AIKL EI+E LLSFL PG RLRNQI EVLD DLI+Q+AE+ A+DI LA
Sbjct: 120 NAEPPEYEHAIKLFEEIREILLSFLTPGGNRLRNQICEVLDTDLIRQQAEHSAVDIQGLA 179
Query: 613 EFIIGMMGTLCAPVRDEGVKKLKDIKEIVPLFRAIFSVLDMMKVDMANFAVSSIRPHLMQ 792
++I MG LCAPVRD+ +++LK IV + R IF VLD+MK+DM NF + S+RPHL +
Sbjct: 180 NYVISTMGKLCAPVRDDDIRELKATSNIVEVLRQIFHVLDLMKMDMVNFTIRSLRPHLQR 239
Query: 793 QSVEYERKQFQELLEKQPNSLDFVTQWLEEAADDLVNQRYRNALPXXXXXXXXXXXPRPD 972
Q V+YER +FQE+LE+ P++LD T+W++E+ ++ + AL P
Sbjct: 240 QLVDYERTKFQEILEETPSALDQTTEWIKESVNEELLSLSETAL---TPGAENSSKPSLS 296
Query: 973 PAAVQNYAYLKLLKWDHLHRLFPETVLMDRSRFXXXXXXXXXXTVLGAVLLVTFSMAAPG 1152
P V N +YLKLL+WD+L + PET++ D +R ++ + L+T +M
Sbjct: 297 PTLVLNNSYLKLLQWDYLKKELPETLMTDGARLQELTEKLNQLKIIACLSLITNNMVGAL 356
Query: 1153 ISSRADFAEKLKMIVKILLTDMHQPSFHLEDALTAVGEKVCLEVSSCLSQCGFSPLTPDK 1332
+ A +LK I +LL M++ +F+L++ L ++G + C+EV+ L + G S L +
Sbjct: 357 TEGLPELANRLKRISAVLLEGMNKETFNLKEVLNSIGVQTCVEVNKALVERGLSTLNAEV 416
Query: 1333 EAVLKGQIQAVASPDNPIRRIMDSRILTFLETHLA-SSHQKPLPTAPGGLGPVQKELEEV 1509
+A L GQ ++ DNPI ++D RI ++++ L S QK +P PGGL +Q+ELEE+
Sbjct: 417 QANLIGQFSSIEEEDNPIWSLIDKRIQLYMKSLLCLPSPQKCMPPMPGGLAVIQQELEEL 476
Query: 1510 AVKFVRLVNYNKMVFSPYYDAILSKIL 1590
+F +VN NK V+ P+Y IL K+L
Sbjct: 477 GSQFANIVNLNKQVYGPFYANILRKLL 503
>ref|XP_532117.2| PREDICTED: similar to t-complex 11 [Canis familiaris].
Length = 693
Score = 306 bits (785), Expect = 3e-83
Identities = 176/448 (39%), Positives = 257/448 (57%), Gaps = 7/448 (1%)
Frame = +1
Query: 268 LLETAKGVTNMALAHEIVVNGDFRIKPVELPEDSLEKRVKDIVHKAFWDCLSVQLSEDPP 447
L++T V+ L++++ N ++ P SLE +VK+ +H AFW+ L QLS PP
Sbjct: 238 LIDTVDDVSK--LSNKVGKNRGLHMEEKVSPPSSLEDKVKETMHNAFWNHLKEQLSATPP 295
Query: 448 TYDRAIKLVGEIKETLLSFLLPGHTRLRNQITEVLDLDLIKQEAENGALDISKLAEFIIG 627
+ A++L+ EIKE LLS LLP +RLR++I E LD +L+ Q+AE+GAL++ L+++I+
Sbjct: 296 DFSCALELLKEIKEILLSLLLPRQSRLRSEIEEALDTELLNQKAEHGALNVPHLSKYILN 355
Query: 628 MMGTLCAPVRDEGVKKLKDIKEIVPLFRAIFSVLDMMKVDMANFAVSSIRPHLMQQSVEY 807
MM LCAPVRDE V+ L++I + V L R IF VL +MK+DM N+ + S++PHL + S+++
Sbjct: 356 MMTLLCAPVRDEAVQNLENITDPVRLLRGIFQVLGLMKMDMVNYTIQSLQPHLQEHSIQH 415
Query: 808 ERKQFQELLEKQPNSLDFVTQWLEEAADDLV------NQRYRNALPXXXXXXXXXXXPRP 969
ER FQELL KQP+ LD T+WL +AA DL + P P
Sbjct: 416 ERATFQELLNKQPSLLDHTTKWLTQAAADLTMPLPTCPDTLDSTSMASSSPNEAVSSPEP 475
Query: 970 -DPAAVQNYAYLKLLKWDHLHRLFPETVLMDRSRFXXXXXXXXXXTVLGAVLLVTFSMAA 1146
P V + +L LL WD + FPET+LMDR+R T+L +VLLV S +
Sbjct: 476 LSPTMVLSQGFLNLLLWDPENEEFPETLLMDRTRLQELESQLHQLTILASVLLVASSFSG 535
Query: 1147 PGISSRADFAEKLKMIVKILLTDMHQPSFHLEDALTAVGEKVCLEVSSCLSQCGFSPLTP 1326
+ F +KLK I K L+ + E+AL V E+V E+ L G + L+
Sbjct: 536 SVLFGSPQFVDKLKHITKDLMEEFKS---RPEEALQTVSEQVSQEIHQSLKNMGLAALSS 592
Query: 1327 DKEAVLKGQIQAVASPDNPIRRIMDSRILTFLETHLASSHQKPLPTAPGGLGPVQKELEE 1506
D A L GQ+Q +A +N +R ++D RI FL+ L Q+ L PGGL ++ EL E
Sbjct: 593 DNTASLIGQLQNIAKKENCVRSVIDQRIHLFLKCCLVLGVQRSLLDLPGGLTVIEAELAE 652
Query: 1507 VAVKFVRLVNYNKMVFSPYYDAILSKIL 1590
+ KFV L ++N+ VF PYY IL ++
Sbjct: 653 LGQKFVSLTHHNQKVFGPYYTEILKTLV 680
>ref|XP_852270.1| PREDICTED: similar to t-complex 11 protein [Canis familiaris].
Length = 329
Score = 168 bits (425), Expect = 2e-41
Identities = 89/208 (42%), Positives = 132/208 (63%)
Frame = +1
Query: 232 HSSPPRFVTVEELLETAKGVTNMALAHEIVVNGDFRIKPVELPEDSLEKRVKDIVHKAFW 411
+ S P ++V +++ET ++ + +AHEIVVN DF ++ L +SLE + ++ FW
Sbjct: 3 NESRPEVLSVTDVIETVNEISKLNIAHEIVVNQDFYMEESVLAPNSLEGSFMETMYNGFW 62
Query: 412 DCLSVQLSEDPPTYDRAIKLVGEIKETLLSFLLPGHTRLRNQITEVLDLDLIKQEAENGA 591
D L QL P + A+KL+ E+KE LLS LLP RLRN+ E LD+DL+KQE E GA
Sbjct: 63 DHLKEQLLNTLPDFTCALKLLKEVKENLLSLLLPHQNRLRNEFEESLDMDLLKQETEYGA 122
Query: 592 LDISKLAEFIIGMMGTLCAPVRDEGVKKLKDIKEIVPLFRAIFSVLDMMKVDMANFAVSS 771
LD+ L+ I+ +M LCA V DE V+KL+ + + V L + IF V +MK+D +
Sbjct: 123 LDVPHLSTHILNLMIMLCAQVGDEAVQKLESMTDPVQLLKGIFHVPGLMKMD-----IQG 177
Query: 772 IRPHLMQQSVEYERKQFQELLEKQPNSL 855
++P+L + SV+YE+ +FQELL+KQP L
Sbjct: 178 LQPYLKEHSVQYEQAKFQELLDKQPTLL 205
Score = 70.5 bits (171), Expect = 5e-12
Identities = 35/81 (43%), Positives = 51/81 (62%)
Frame = +1
Query: 1348 GQIQAVASPDNPIRRIMDSRILTFLETHLASSHQKPLPTAPGGLGPVQKELEEVAVKFVR 1527
GQ+Q +A +N +R I+D RI FL+ L Q+ L PGGL ++ EL E++ KF
Sbjct: 236 GQLQNIAKKENCVRNIIDQRIRLFLKCCLVHGMQESLQDFPGGLSLIEGELAELSWKFFN 295
Query: 1528 LVNYNKMVFSPYYDAILSKIL 1590
L+++N+ VFSPYY IL I+
Sbjct: 296 LMHHNQQVFSPYYAEILKNII 316
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 71,615,563
Number of extensions: 1977077
Number of successful extensions: 7923
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 7863
Number of HSP's successfully gapped: 5
Length of query: 591
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 483
Effective length of database: 15,274,216
Effective search space: 7377446328
Effective search space used: 7377446328
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LNG01_0046_G07
(1774 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060863.3| t-complex 11 (mouse) like 1 [Homo sapiens]. 846 0.0
Alignment gi|NP_001139013.1| t-complex 11 (mouse) like 1 [Homo sapiens]. 846 0.0
Alignment gi|NP_689985.1| T-complex protein 11-like protein 2 [Homo sapie... 377 e-104
Alignment gi|NP_001087197.1| T-complex protein 11 homolog isoform 1 [Homo... 334 2e-91
Alignment gi|NP_061149.1| T-complex protein 11 homolog isoform 2 [Homo sa... 310 3e-84
>ref|NP_060863.3| t-complex 11 (mouse) like 1 [Homo sapiens].
Length = 509
Score = 846 bits (2185), Expect = 0.0
Identities = 429/509 (84%), Positives = 458/509 (89%)
Frame = +1
Query: 73 MSENLDKSNINEAGKSKSNDSEQGLEDAVEGSDEALQKKIKSGSPSTQRVQRPHSSPPRF 252
MSENLDKSN+NEAGKSKSNDSE+GLEDAVEG+DEALQK IKS S S QRVQRPHSSPPRF
Sbjct: 1 MSENLDKSNVNEAGKSKSNDSEEGLEDAVEGADEALQKAIKSDSSSPQRVQRPHSSPPRF 60
Query: 253 VTVEELLETAKGVTNMALAHEIVVNGDFRIKPVELPEDSLEKRVKDIVHKAFWDCLSVQL 432
VTVEELLETA+GVTNMALAHEIVVNGDF+IKPVELPE+SL+KRVK+IVHKAFWDCLSVQL
Sbjct: 61 VTVEELLETARGVTNMALAHEIVVNGDFQIKPVELPENSLKKRVKEIVHKAFWDCLSVQL 120
Query: 433 SEDPPTYDRAIKLVGEIKETLLSFLLPGHTRLRNQITEVLDLDLIKQEAENGALDISKLA 612
SEDPP YD AIKLVGEIKETLLSFLLPGHTRLRNQITEVLDLDLIKQEAENGALDISKLA
Sbjct: 121 SEDPPAYDHAIKLVGEIKETLLSFLLPGHTRLRNQITEVLDLDLIKQEAENGALDISKLA 180
Query: 613 EFIIGMMGTLCAPVRDEGVKKLKDIKEIVPLFRAIFSVLDMMKVDMANFAVSSIRPHLMQ 792
EFIIGMMGTLCAP RDE VKKLKDIKEIVPLFR IFSVLD+MKVDMANFA+SSIRPHLMQ
Sbjct: 181 EFIIGMMGTLCAPARDEEVKKLKDIKEIVPLFREIFSVLDLMKVDMANFAISSIRPHLMQ 240
Query: 793 QSVEYERKQFQELLEKQPNSLDFVTQWLEEAADDLVNQRYRNALPXXXXXXXXXXXPRPD 972
QSVEYERK+FQE+LE+QPNSLDFVTQWLEEA++DL+ Q+Y++ALP PR
Sbjct: 241 QSVEYERKKFQEILERQPNSLDFVTQWLEEASEDLMTQKYKHALPVGGMAAGSGDMPRLS 300
Query: 973 PAAVQNYAYLKLLKWDHLHRLFPETVLMDRSRFXXXXXXXXXXTVLGAVLLVTFSMAAPG 1152
P AVQNYAYLKLLKWDHL R FPETVLMD+SRF T+LGAVLLVTFSMAAPG
Sbjct: 301 PVAVQNYAYLKLLKWDHLQRPFPETVLMDQSRFHELQLQLEQLTILGAVLLVTFSMAAPG 360
Query: 1153 ISSRADFAEKLKMIVKILLTDMHQPSFHLEDALTAVGEKVCLEVSSCLSQCGFSPLTPDK 1332
ISS+ADFAEKLKMIVKILLTDMH PSFHL+D LT +GEKVCLEVSSCLS CG SP T DK
Sbjct: 361 ISSQADFAEKLKMIVKILLTDMHLPSFHLKDVLTTIGEKVCLEVSSCLSLCGSSPFTTDK 420
Query: 1333 EAVLKGQIQAVASPDNPIRRIMDSRILTFLETHLASSHQKPLPTAPGGLGPVQKELEEVA 1512
E VLKGQIQAVASPD+PIRRIM+SRILTFLET+LAS HQKPLPT PGGL PVQ+ELEEVA
Sbjct: 421 ETVLKGQIQAVASPDDPIRRIMESRILTFLETYLASGHQKPLPTVPGGLSPVQRELEEVA 480
Query: 1513 VKFVRLVNYNKMVFSPYYDAILSKILATS 1599
+KF RLVNYNKMVF PYYDAILSKIL S
Sbjct: 481 IKFARLVNYNKMVFCPYYDAILSKILVRS 509
>ref|NP_001139013.1| t-complex 11 (mouse) like 1 [Homo sapiens].
Length = 509
Score = 846 bits (2185), Expect = 0.0
Identities = 429/509 (84%), Positives = 458/509 (89%)
Frame = +1
Query: 73 MSENLDKSNINEAGKSKSNDSEQGLEDAVEGSDEALQKKIKSGSPSTQRVQRPHSSPPRF 252
MSENLDKSN+NEAGKSKSNDSE+GLEDAVEG+DEALQK IKS S S QRVQRPHSSPPRF
Sbjct: 1 MSENLDKSNVNEAGKSKSNDSEEGLEDAVEGADEALQKAIKSDSSSPQRVQRPHSSPPRF 60
Query: 253 VTVEELLETAKGVTNMALAHEIVVNGDFRIKPVELPEDSLEKRVKDIVHKAFWDCLSVQL 432
VTVEELLETA+GVTNMALAHEIVVNGDF+IKPVELPE+SL+KRVK+IVHKAFWDCLSVQL
Sbjct: 61 VTVEELLETARGVTNMALAHEIVVNGDFQIKPVELPENSLKKRVKEIVHKAFWDCLSVQL 120
Query: 433 SEDPPTYDRAIKLVGEIKETLLSFLLPGHTRLRNQITEVLDLDLIKQEAENGALDISKLA 612
SEDPP YD AIKLVGEIKETLLSFLLPGHTRLRNQITEVLDLDLIKQEAENGALDISKLA
Sbjct: 121 SEDPPAYDHAIKLVGEIKETLLSFLLPGHTRLRNQITEVLDLDLIKQEAENGALDISKLA 180
Query: 613 EFIIGMMGTLCAPVRDEGVKKLKDIKEIVPLFRAIFSVLDMMKVDMANFAVSSIRPHLMQ 792
EFIIGMMGTLCAP RDE VKKLKDIKEIVPLFR IFSVLD+MKVDMANFA+SSIRPHLMQ
Sbjct: 181 EFIIGMMGTLCAPARDEEVKKLKDIKEIVPLFREIFSVLDLMKVDMANFAISSIRPHLMQ 240
Query: 793 QSVEYERKQFQELLEKQPNSLDFVTQWLEEAADDLVNQRYRNALPXXXXXXXXXXXPRPD 972
QSVEYERK+FQE+LE+QPNSLDFVTQWLEEA++DL+ Q+Y++ALP PR
Sbjct: 241 QSVEYERKKFQEILERQPNSLDFVTQWLEEASEDLMTQKYKHALPVGGMAAGSGDMPRLS 300
Query: 973 PAAVQNYAYLKLLKWDHLHRLFPETVLMDRSRFXXXXXXXXXXTVLGAVLLVTFSMAAPG 1152
P AVQNYAYLKLLKWDHL R FPETVLMD+SRF T+LGAVLLVTFSMAAPG
Sbjct: 301 PVAVQNYAYLKLLKWDHLQRPFPETVLMDQSRFHELQLQLEQLTILGAVLLVTFSMAAPG 360
Query: 1153 ISSRADFAEKLKMIVKILLTDMHQPSFHLEDALTAVGEKVCLEVSSCLSQCGFSPLTPDK 1332
ISS+ADFAEKLKMIVKILLTDMH PSFHL+D LT +GEKVCLEVSSCLS CG SP T DK
Sbjct: 361 ISSQADFAEKLKMIVKILLTDMHLPSFHLKDVLTTIGEKVCLEVSSCLSLCGSSPFTTDK 420
Query: 1333 EAVLKGQIQAVASPDNPIRRIMDSRILTFLETHLASSHQKPLPTAPGGLGPVQKELEEVA 1512
E VLKGQIQAVASPD+PIRRIM+SRILTFLET+LAS HQKPLPT PGGL PVQ+ELEEVA
Sbjct: 421 ETVLKGQIQAVASPDDPIRRIMESRILTFLETYLASGHQKPLPTVPGGLSPVQRELEEVA 480
Query: 1513 VKFVRLVNYNKMVFSPYYDAILSKILATS 1599
+KF RLVNYNKMVF PYYDAILSKIL S
Sbjct: 481 IKFARLVNYNKMVFCPYYDAILSKILVRS 509
>ref|NP_689985.1| T-complex protein 11-like protein 2 [Homo sapiens].
Length = 519
Score = 377 bits (967), Expect = e-104
Identities = 206/507 (40%), Positives = 305/507 (60%), Gaps = 1/507 (0%)
Frame = +1
Query: 73 MSENLDKSNINEAGKSKSNDSEQGLEDAVEGSDEALQKKIKSGSPSTQRVQRPHSSPPRF 252
M N +K + E S S DS + E SD ++ + S++ +SPPR
Sbjct: 1 MPFNGEKQCVGEDQPSDS-DSSRFSESMASLSDYECSRQSFASDSSSKSSSPASTSPPRV 59
Query: 253 VTVEELLETAKGVTNMALAHEIVVNGDFRIKPVELPEDSLEKRVKDIVHKAFWDCLSVQL 432
VT +E++ TA+ ++N+ LAHEI VN +F++K LPE SL RVK IVH+AFWD L +L
Sbjct: 60 VTFDEVMATARNLSNLTLAHEIAVNENFQLKQEALPEKSLAGRVKHIVHQAFWDVLDSEL 119
Query: 433 SEDPPTYDRAIKLVGEIKETLLSFLLPGHTRLRNQITEVLDLDLIKQEAENGALDISKLA 612
+ DPP ++ AIKL EI+E LLSFL PG RLRNQI EVLD DLI+Q+AE+ A+DI LA
Sbjct: 120 NADPPEFEHAIKLFEEIREILLSFLTPGGNRLRNQICEVLDTDLIRQQAEHSAVDIQGLA 179
Query: 613 EFIIGMMGTLCAPVRDEGVKKLKDIKEIVPLFRAIFSVLDMMKVDMANFAVSSIRPHLMQ 792
++I MG LCAPVRD +++LK IV + R IF VLD+M++DMANF + S+RPHL +
Sbjct: 180 NYVISTMGKLCAPVRDNDIRELKATGNIVEVLRQIFHVLDLMQMDMANFTIMSLRPHLQR 239
Query: 793 QSVEYERKQFQELLEKQPNSLDFVTQWLEEAADDLVNQRYRNALPXXXXXXXXXXXPRPD 972
Q VEYER +FQE+LE+ P++LD T+W++E+ ++ + +AL P
Sbjct: 240 QLVEYERTKFQEILEETPSALDQTTEWIKESVNEELFSLSESAL---TPGAENTSKPSLS 296
Query: 973 PAAVQNYAYLKLLKWDHLHRLFPETVLMDRSRFXXXXXXXXXXTVLGAVLLVTFSMAAPG 1152
P V N +YLKLL+WD+ + PET++ D +R ++ + L+T +M
Sbjct: 297 PTLVLNNSYLKLLQWDYQKKELPETLMTDGARLQELTEKLNQLKIIACLSLITNNMVGAI 356
Query: 1153 ISSRADFAEKLKMIVKILLTDMHQPSFHLEDALTAVGEKVCLEVSSCLSQCGFSPLTPDK 1332
+ A +L I +LL M++ +F+L++ L ++G + C+EV+ L + G L +
Sbjct: 357 TGGLPELASRLTRISAVLLEGMNKETFNLKEVLNSIGIQTCVEVNKTLMERGLPTLNAEI 416
Query: 1333 EAVLKGQIQAVASPDNPIRRIMDSRILTFLETHLA-SSHQKPLPTAPGGLGPVQKELEEV 1509
+A L GQ ++ DNPI ++D RI ++ L S QK +P PGGL +Q+ELE +
Sbjct: 417 QANLIGQFSSIEEEDNPIWSLIDKRIKLYMRRLLCLPSPQKCMPPMPGGLAVIQQELEAL 476
Query: 1510 AVKFVRLVNYNKMVFSPYYDAILSKIL 1590
++ +VN NK V+ P+Y IL K+L
Sbjct: 477 GSQYANIVNLNKQVYGPFYANILRKLL 503
>ref|NP_001087197.1| T-complex protein 11 homolog isoform 1 [Homo sapiens].
Length = 516
Score = 334 bits (856), Expect = 2e-91
Identities = 198/499 (39%), Positives = 280/499 (56%), Gaps = 7/499 (1%)
Frame = +1
Query: 118 SKSNDSEQGLEDAVEGSDEALQKKIKSGSPSTQRVQRPHSSPPRFVTVEELLETAKGVTN 297
SK D ++ + G E K ++ P Q + PP F++V L ET V+
Sbjct: 12 SKMPDVKESVPPKYPGDSEGRSCKPETSGPP-QEDKSGSEDPPPFLSVTGLTETVNEVSK 70
Query: 298 MALAHEIVVNGDFRIKPVELPEDSLEKRVKDIVHKAFWDCLSVQLSEDPPTYDRAIKLVG 477
L+++I +N D+ ++ LP SLE +VK+ VH AFWD L QLS PP + A++L+
Sbjct: 71 --LSNKIGMNCDYYMEEKVLPPSSLEGKVKETVHNAFWDHLKEQLSATPPDFSCALELLK 128
Query: 478 EIKETLLSFLLPGHTRLRNQITEVLDLDLIKQEAENGALDISKLAEFIIGMMGTLCAPVR 657
EIKE LLS LLP RLR +I E LD+DL+KQEAE+GAL + L+++++ MM LCAPVR
Sbjct: 129 EIKEILLSLLLPRQNRLRIEIEEALDMDLLKQEAEHGALKVLYLSKYVLNMMALLCAPVR 188
Query: 658 DEGVKKLKDIKEIVPLFRAIFSVLDMMKVDMANFAVSSIRPHLMQQSVEYERKQFQELLE 837
DE V+KL++I + V L R IF VL MK+DM N+ + S++PHL + S++YER +FQELL
Sbjct: 189 DEAVQKLENITDPVWLLRGIFQVLGRMKMDMVNYTIQSLQPHLQEHSIQYERAKFQELLN 248
Query: 838 KQPNSLDFVTQWLEEAADDLV------NQRYRNALPXXXXXXXXXXXPRP-DPAAVQNYA 996
KQP+ L+ T+WL +AA DL ++ P P P V
Sbjct: 249 KQPSLLNHTTKWLTQAAGDLTMSPPTCPDTSDSSSVAGPSPNEAANNPEPLSPTMVLCQG 308
Query: 997 YLKLLKWDHLHRLFPETVLMDRSRFXXXXXXXXXXTVLGAVLLVTFSMAAPGISSRADFA 1176
+L LL WD + FPET+LMDR+R TV+ +VLLV S + + F
Sbjct: 309 FLNLLLWDLENEEFPETLLMDRTRLQELKSQLHQLTVMASVLLVASSFSGSVLFGSPQFV 368
Query: 1177 EKLKMIVKILLTDMHQPSFHLEDALTAVGEKVCLEVSSCLSQCGFSPLTPDKEAVLKGQI 1356
+KLK I K LL D H E+A+ V E+V E+ L G L+ D A L GQ+
Sbjct: 369 DKLKRITKSLLEDFHS---RPEEAILTVSEQVSQEIHQSLKNMGLVALSSDNTASLMGQL 425
Query: 1357 QAVASPDNPIRRIMDSRILTFLETHLASSHQKPLPTAPGGLGPVQKELEEVAVKFVRLVN 1536
Q +A +N + ++D RI FL+ L Q+ L PGGL ++ EL E+ KFV L +
Sbjct: 426 QNIAKKENCVCSVIDQRIHLFLKCCLVLGVQRSLLDLPGGLTLIEAELAELGQKFVNLTH 485
Query: 1537 YNKMVFSPYYDAILSKILA 1593
+N+ VF PYY IL +++
Sbjct: 486 HNQQVFGPYYTEILKTLIS 504
>ref|NP_061149.1| T-complex protein 11 homolog isoform 2 [Homo sapiens].
Length = 441
Score = 310 bits (794), Expect = 3e-84
Identities = 176/416 (42%), Positives = 242/416 (58%), Gaps = 7/416 (1%)
Frame = +1
Query: 367 SLEKRVKDIVHKAFWDCLSVQLSEDPPTYDRAIKLVGEIKETLLSFLLPGHTRLRNQITE 546
SLE +VK+ VH AFWD L QLS PP + A++L+ EIKE LLS LLP RLR +I E
Sbjct: 17 SLEGKVKETVHNAFWDHLKEQLSATPPDFSCALELLKEIKEILLSLLLPRQNRLRIEIEE 76
Query: 547 VLDLDLIKQEAENGALDISKLAEFIIGMMGTLCAPVRDEGVKKLKDIKEIVPLFRAIFSV 726
LD+DL+KQEAE+GAL + L+++++ MM LCAPVRDE V+KL++I + V L R IF V
Sbjct: 77 ALDMDLLKQEAEHGALKVLYLSKYVLNMMALLCAPVRDEAVQKLENITDPVWLLRGIFQV 136
Query: 727 LDMMKVDMANFAVSSIRPHLMQQSVEYERKQFQELLEKQPNSLDFVTQWLEEAADDLV-- 900
L MK+DM N+ + S++PHL + S++YER +FQELL KQP+ L+ T+WL +AA DL
Sbjct: 137 LGRMKMDMVNYTIQSLQPHLQEHSIQYERAKFQELLNKQPSLLNHTTKWLTQAAGDLTMS 196
Query: 901 ----NQRYRNALPXXXXXXXXXXXPRP-DPAAVQNYAYLKLLKWDHLHRLFPETVLMDRS 1065
++ P P P V +L LL WD + FPET+LMDR+
Sbjct: 197 PPTCPDTSDSSSVAGPSPNEAANNPEPLSPTMVLCQGFLNLLLWDLENEEFPETLLMDRT 256
Query: 1066 RFXXXXXXXXXXTVLGAVLLVTFSMAAPGISSRADFAEKLKMIVKILLTDMHQPSFHLED 1245
R TV+ +VLLV S + + F +KLK I K LL D H E+
Sbjct: 257 RLQELKSQLHQLTVMASVLLVASSFSGSVLFGSPQFVDKLKRITKSLLEDFHS---RPEE 313
Query: 1246 ALTAVGEKVCLEVSSCLSQCGFSPLTPDKEAVLKGQIQAVASPDNPIRRIMDSRILTFLE 1425
A+ V E+V E+ L G L+ D A L GQ+Q +A +N + ++D RI FL+
Sbjct: 314 AILTVSEQVSQEIHQSLKNMGLVALSSDNTASLMGQLQNIAKKENCVCSVIDQRIHLFLK 373
Query: 1426 THLASSHQKPLPTAPGGLGPVQKELEEVAVKFVRLVNYNKMVFSPYYDAILSKILA 1593
L Q+ L PGGL ++ EL E+ KFV L ++N+ VF PYY IL +++
Sbjct: 374 CCLVLGVQRSLLDLPGGLTLIEAELAELGQKFVNLTHHNQQVFGPYYTEILKTLIS 429
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 70,161,049
Number of extensions: 1937588
Number of successful extensions: 8138
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 8056
Number of HSP's successfully gapped: 5
Length of query: 591
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 483
Effective length of database: 14,737,052
Effective search space: 7117996116
Effective search space used: 7117996116
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LNG01_0046_G07
(1774 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001192401.1| T-complex protein 11-like protein 1 [Bos tau... 884 0.0
Alignment gi|XP_002693543.1| PREDICTED: t-complex 11 (mouse)-like 1 [Bos ... 884 0.0
Alignment gi|NP_001098901.1| T-complex protein 11-like protein 2 [Bos tau... 372 e-103
Alignment gi|XP_002699878.1| PREDICTED: hCG2045904-like [Bos taurus]. 335 6e-92
Alignment gi|XP_600614.4| PREDICTED: hCG2045904-like [Bos taurus]. 335 6e-92
Alignment gi|NP_001103549.1| t-complex 11 [Bos taurus]. 206 7e-53
>ref|NP_001192401.1| T-complex protein 11-like protein 1 [Bos taurus].
Length = 509
Score = 884 bits (2285), Expect = 0.0
Identities = 454/509 (89%), Positives = 470/509 (92%)
Frame = +1
Query: 73 MSENLDKSNINEAGKSKSNDSEQGLEDAVEGSDEALQKKIKSGSPSTQRVQRPHSSPPRF 252
MSENLDKSNINEAGKSKS+DSEQGLEDAVE SDEALQKKIKSGSPSTQRVQRPHSSPPRF
Sbjct: 1 MSENLDKSNINEAGKSKSSDSEQGLEDAVEVSDEALQKKIKSGSPSTQRVQRPHSSPPRF 60
Query: 253 VTVEELLETAKGVTNMALAHEIVVNGDFRIKPVELPEDSLEKRVKDIVHKAFWDCLSVQL 432
VTVEELLETAKGVTNMALAHEIV+NGDF+IKPVELPEDSLEKRVKDIVHKAFWDCLSVQL
Sbjct: 61 VTVEELLETAKGVTNMALAHEIVINGDFQIKPVELPEDSLEKRVKDIVHKAFWDCLSVQL 120
Query: 433 SEDPPTYDRAIKLVGEIKETLLSFLLPGHTRLRNQITEVLDLDLIKQEAENGALDISKLA 612
SE PPTYDRAIKLVGEIKETLLSFLLPGHTRLRNQITEVLDLDLIKQEAENGALDISKLA
Sbjct: 121 SEVPPTYDRAIKLVGEIKETLLSFLLPGHTRLRNQITEVLDLDLIKQEAENGALDISKLA 180
Query: 613 EFIIGMMGTLCAPVRDEGVKKLKDIKEIVPLFRAIFSVLDMMKVDMANFAVSSIRPHLMQ 792
EFIIGMMGTLCAPVRDE VKKLKDIKEIVPLFRAIFSVLD+MKVDMANFAVSSIRPHLMQ
Sbjct: 181 EFIIGMMGTLCAPVRDEEVKKLKDIKEIVPLFRAIFSVLDLMKVDMANFAVSSIRPHLMQ 240
Query: 793 QSVEYERKQFQELLEKQPNSLDFVTQWLEEAADDLVNQRYRNALPXXXXXXXXXXXPRPD 972
QS+EYERKQFQE LEKQPNSLDFVTQWL+EA DDL++Q+Y+NALP P+ D
Sbjct: 241 QSIEYERKQFQEFLEKQPNSLDFVTQWLQEATDDLMSQKYKNALPAAGGAAGSGDGPQLD 300
Query: 973 PAAVQNYAYLKLLKWDHLHRLFPETVLMDRSRFXXXXXXXXXXTVLGAVLLVTFSMAAPG 1152
P AVQNYAYLKLLKWDHLHR FPETVLMD SRF TVLGAVLLVTFSMAAPG
Sbjct: 301 PVAVQNYAYLKLLKWDHLHRPFPETVLMDHSRFQEFQLQLEQLTVLGAVLLVTFSMAAPG 360
Query: 1153 ISSRADFAEKLKMIVKILLTDMHQPSFHLEDALTAVGEKVCLEVSSCLSQCGFSPLTPDK 1332
I+SRADFAEKLKMIVKILLTDMH PSFHLEDALTAVGEKVCLEVSSCLS CG SPLT DK
Sbjct: 361 IASRADFAEKLKMIVKILLTDMHLPSFHLEDALTAVGEKVCLEVSSCLSLCGLSPLTTDK 420
Query: 1333 EAVLKGQIQAVASPDNPIRRIMDSRILTFLETHLASSHQKPLPTAPGGLGPVQKELEEVA 1512
EAVLKGQIQAVASPDNPIRRI+DSRILTFL+ +LASSHQKP P APGGLGP+QKELEEVA
Sbjct: 421 EAVLKGQIQAVASPDNPIRRIVDSRILTFLDAYLASSHQKPSPIAPGGLGPIQKELEEVA 480
Query: 1513 VKFVRLVNYNKMVFSPYYDAILSKILATS 1599
VKFVRLVNYNKMVFSPYYDAILSK LA S
Sbjct: 481 VKFVRLVNYNKMVFSPYYDAILSKTLARS 509
>ref|XP_002693543.1| PREDICTED: t-complex 11 (mouse)-like 1 [Bos taurus].
Length = 509
Score = 884 bits (2285), Expect = 0.0
Identities = 454/509 (89%), Positives = 470/509 (92%)
Frame = +1
Query: 73 MSENLDKSNINEAGKSKSNDSEQGLEDAVEGSDEALQKKIKSGSPSTQRVQRPHSSPPRF 252
MSENLDKSNINEAGKSKS+DSEQGLEDAVE SDEALQKKIKSGSPSTQRVQRPHSSPPRF
Sbjct: 1 MSENLDKSNINEAGKSKSSDSEQGLEDAVEVSDEALQKKIKSGSPSTQRVQRPHSSPPRF 60
Query: 253 VTVEELLETAKGVTNMALAHEIVVNGDFRIKPVELPEDSLEKRVKDIVHKAFWDCLSVQL 432
VTVEELLETAKGVTNMALAHEIV+NGDF+IKPVELPEDSLEKRVKDIVHKAFWDCLSVQL
Sbjct: 61 VTVEELLETAKGVTNMALAHEIVINGDFQIKPVELPEDSLEKRVKDIVHKAFWDCLSVQL 120
Query: 433 SEDPPTYDRAIKLVGEIKETLLSFLLPGHTRLRNQITEVLDLDLIKQEAENGALDISKLA 612
SE PPTYDRAIKLVGEIKETLLSFLLPGHTRLRNQITEVLDLDLIKQEAENGALDISKLA
Sbjct: 121 SEVPPTYDRAIKLVGEIKETLLSFLLPGHTRLRNQITEVLDLDLIKQEAENGALDISKLA 180
Query: 613 EFIIGMMGTLCAPVRDEGVKKLKDIKEIVPLFRAIFSVLDMMKVDMANFAVSSIRPHLMQ 792
EFIIGMMGTLCAPVRDE VKKLKDIKEIVPLFRAIFSVLD+MKVDMANFAVSSIRPHLMQ
Sbjct: 181 EFIIGMMGTLCAPVRDEEVKKLKDIKEIVPLFRAIFSVLDLMKVDMANFAVSSIRPHLMQ 240
Query: 793 QSVEYERKQFQELLEKQPNSLDFVTQWLEEAADDLVNQRYRNALPXXXXXXXXXXXPRPD 972
QS+EYERKQFQE LEKQPNSLDFVTQWL+EA DDL++Q+Y+NALP P+ D
Sbjct: 241 QSIEYERKQFQEFLEKQPNSLDFVTQWLQEATDDLMSQKYKNALPAAGGAAGSGDGPQLD 300
Query: 973 PAAVQNYAYLKLLKWDHLHRLFPETVLMDRSRFXXXXXXXXXXTVLGAVLLVTFSMAAPG 1152
P AVQNYAYLKLLKWDHLHR FPETVLMD SRF TVLGAVLLVTFSMAAPG
Sbjct: 301 PVAVQNYAYLKLLKWDHLHRPFPETVLMDHSRFQEFQLQLEQLTVLGAVLLVTFSMAAPG 360
Query: 1153 ISSRADFAEKLKMIVKILLTDMHQPSFHLEDALTAVGEKVCLEVSSCLSQCGFSPLTPDK 1332
I+SRADFAEKLKMIVKILLTDMH PSFHLEDALTAVGEKVCLEVSSCLS CG SPLT DK
Sbjct: 361 IASRADFAEKLKMIVKILLTDMHLPSFHLEDALTAVGEKVCLEVSSCLSLCGLSPLTTDK 420
Query: 1333 EAVLKGQIQAVASPDNPIRRIMDSRILTFLETHLASSHQKPLPTAPGGLGPVQKELEEVA 1512
EAVLKGQIQAVASPDNPIRRI+DSRILTFL+ +LASSHQKP P APGGLGP+QKELEEVA
Sbjct: 421 EAVLKGQIQAVASPDNPIRRIVDSRILTFLDAYLASSHQKPSPIAPGGLGPIQKELEEVA 480
Query: 1513 VKFVRLVNYNKMVFSPYYDAILSKILATS 1599
VKFVRLVNYNKMVFSPYYDAILSK LA S
Sbjct: 481 VKFVRLVNYNKMVFSPYYDAILSKTLARS 509
>ref|NP_001098901.1| T-complex protein 11-like protein 2 [Bos taurus].
Length = 519
Score = 372 bits (956), Expect = e-103
Identities = 202/508 (39%), Positives = 308/508 (60%), Gaps = 2/508 (0%)
Frame = +1
Query: 73 MSENLDKSNINEAGKSKSNDSEQGLEDAVEGSDEALQKKIKSGSPSTQRVQRPHSSPPRF 252
M N +K ++E S S DS + E SD ++ + S++ +SPPR
Sbjct: 1 MPFNGEKQCVSEDQPSDS-DSSRFSESMASLSDYECSRQSFTSDSSSKSSSPASTSPPRV 59
Query: 253 VTVEELLETAKGVTNMALAHEIVVNGDFRIKPVELPEDSLEKRVKDIVHKAFWDCLSVQL 432
VT +E++ A+ ++NM LAHEI VN +F++K LPE SL RV+ IVH+AFWD L +L
Sbjct: 60 VTFDEVMAAARNLSNMTLAHEIAVNENFQLKQDALPESSLAGRVRHIVHQAFWDVLESEL 119
Query: 433 SEDPPTYDRAIKLVGEIKETLLSFLLPGHTRLRNQITEVLDLDLIKQEAENGALDISKLA 612
+ +PP Y+ AIKL EI+E LLSFL PG RLRNQI EVLD DLI+Q+AE+ A+DI LA
Sbjct: 120 NAEPPEYEHAIKLFEEIREILLSFLTPGGNRLRNQICEVLDTDLIRQQAEHSAVDIQGLA 179
Query: 613 EFIIGMMGTLCAPVRDEGVKKLKDIKEIVPLFRAIFSVLDMMKVDMANFAVSSIRPHLMQ 792
++I MG LCAPVRD+ +++LK IV + R IF VLD+MK+DM NF + S+RPHL +
Sbjct: 180 NYVISTMGKLCAPVRDDDIRELKATSNIVEVLRQIFHVLDLMKMDMVNFTIRSLRPHLQR 239
Query: 793 QSVEYERKQFQELLEKQPNSLDFVTQWLEEAA-DDLVNQRYRNALPXXXXXXXXXXXPRP 969
Q V+YER +FQE+LE+ P++L+ T+W++E+ ++L++ P P
Sbjct: 240 QLVDYERTKFQEILEETPSALNQTTEWIKESVHEELLSLSEATLTP----GAENNSKPSL 295
Query: 970 DPAAVQNYAYLKLLKWDHLHRLFPETVLMDRSRFXXXXXXXXXXTVLGAVLLVTFSMAAP 1149
P V N +YLKLL+WD+ + PET++ D +R ++ + L+T +M
Sbjct: 296 SPTLVLNNSYLKLLQWDYQKKELPETLMTDGARLQELTEKLNQLKMIACLALITNNMVGA 355
Query: 1150 GISSRADFAEKLKMIVKILLTDMHQPSFHLEDALTAVGEKVCLEVSSCLSQCGFSPLTPD 1329
+ A +LK I +LL M++ +F+L++ L ++G ++C+EV+ L + G L +
Sbjct: 356 LTEGLPELAVRLKRISAVLLEGMNKETFNLKEVLNSIGIQICVEVNKTLMERGLPTLNAE 415
Query: 1330 KEAVLKGQIQAVASPDNPIRRIMDSRILTFLETHLA-SSHQKPLPTAPGGLGPVQKELEE 1506
+ L GQ ++ DNPI ++D RI ++++ L S + +P PGGL VQ+ELE
Sbjct: 416 VQDNLVGQFSSIEEEDNPIWSLIDKRIQLYMKSLLCLPSPPRCMPPVPGGLAVVQQELES 475
Query: 1507 VAVKFVRLVNYNKMVFSPYYDAILSKIL 1590
+ +++ +VN NK V+ P+Y IL K+L
Sbjct: 476 LGLQYANIVNLNKQVYGPFYANILRKLL 503
>ref|XP_002699878.1| PREDICTED: hCG2045904-like [Bos taurus].
Length = 506
Score = 335 bits (860), Expect = 6e-92
Identities = 185/453 (40%), Positives = 270/453 (59%), Gaps = 7/453 (1%)
Frame = +1
Query: 253 VTVEELLETAKGVTNMALAHEIVVNGDFRIKPVELPEDSLEKRVKDIVHKAFWDCLSVQL 432
++V +L+ET ++ +++AHEIVVN DF ++ LP +SLE R+ + ++KAFWD L VQL
Sbjct: 44 LSVTDLIETVNEISRLSIAHEIVVNQDFYMEDGVLPPNSLEGRIMETMYKAFWDHLKVQL 103
Query: 433 SEDPPTYDRAIKLVGEIKETLLSFLLPGHTRLRNQITEVLDLDLIKQEAENGALDISKLA 612
S P + A++L+ E+KE LLS LLP LR++I E LD+DL+KQEAE+GALD+ L+
Sbjct: 104 SSTPADFTSALELLKEVKEILLSLLLPRQNSLRDEIEEALDIDLLKQEAEHGALDVPHLS 163
Query: 613 EFIIGMMGTLCAPVRDEGVKKLKDIKEIVPLFRAIFSVLDMMKVDMANFAVSSIRPHLMQ 792
+I+ +M LCAPVRDE V+KL+ I + V L R IF VL +MK+DM N + S RP+L +
Sbjct: 164 NYILNLMTLLCAPVRDEAVRKLESITDPVQLLRGIFHVLGLMKMDMVNHTIQSFRPYLKE 223
Query: 793 QSVEYERKQFQELLEKQPNSLDFVTQWLEEAADDLV-------NQRYRNALPXXXXXXXX 951
S++YER +FQELL KQPN LD T+WL + A DL + +++
Sbjct: 224 HSIQYERAKFQELLNKQPNLLDCTTKWLTKTALDLTTAPSSSPDSPSSSSMAHSSPNWAV 283
Query: 952 XXXPRPDPAAVQNYAYLKLLKWDHLHRLFPETVLMDRSRFXXXXXXXXXXTVLGAVLLVT 1131
P V YL LL WD + FPET+LMD+ R +L +VLLV
Sbjct: 284 DNPQLPSSTMVLYQGYLNLLLWDLDSKEFPETLLMDKIRLQDMESQLKQLAILASVLLVA 343
Query: 1132 FSMAAPGISSRADFAEKLKMIVKILLTDMHQPSFHLEDALTAVGEKVCLEVSSCLSQCGF 1311
S + + S +F KLK I K L+ + + E+A+ +V E+V ++ L G
Sbjct: 344 RSFSGSALFSSTEFVNKLKHITKALMEEFNS---RPEEAMVSVSEQVSQKIHERLKDMGL 400
Query: 1312 SPLTPDKEAVLKGQIQAVASPDNPIRRIMDSRILTFLETHLASSHQKPLPTAPGGLGPVQ 1491
+ L+ +K+A L+GQ+Q +A +N +R I+D RI FL+ L Q+ L P GL ++
Sbjct: 401 TALSSEKKACLRGQLQNIAKKENRVRNIVDQRIHLFLKGCLVRGMQESLLDFPVGLTLIK 460
Query: 1492 KELEEVAVKFVRLVNYNKMVFSPYYDAILSKIL 1590
EL ++ KF L+ +N+ VFSPYYD IL I+
Sbjct: 461 GELTKLGWKFFNLMRHNQQVFSPYYDEILKDII 493
>ref|XP_600614.4| PREDICTED: hCG2045904-like [Bos taurus].
Length = 506
Score = 335 bits (860), Expect = 6e-92
Identities = 185/453 (40%), Positives = 270/453 (59%), Gaps = 7/453 (1%)
Frame = +1
Query: 253 VTVEELLETAKGVTNMALAHEIVVNGDFRIKPVELPEDSLEKRVKDIVHKAFWDCLSVQL 432
++V +L+ET ++ +++AHEIVVN DF ++ LP +SLE R+ + ++KAFWD L VQL
Sbjct: 44 LSVTDLIETVNEISRLSIAHEIVVNQDFYMEDGVLPPNSLEGRIMETMYKAFWDHLKVQL 103
Query: 433 SEDPPTYDRAIKLVGEIKETLLSFLLPGHTRLRNQITEVLDLDLIKQEAENGALDISKLA 612
S P + A++L+ E+KE LLS LLP LR++I E LD+DL+KQEAE+GALD+ L+
Sbjct: 104 SSTPADFTSALELLKEVKEILLSLLLPRQNSLRDEIEEALDIDLLKQEAEHGALDVPHLS 163
Query: 613 EFIIGMMGTLCAPVRDEGVKKLKDIKEIVPLFRAIFSVLDMMKVDMANFAVSSIRPHLMQ 792
+I+ +M LCAPVRDE V+KL+ I + V L R IF VL +MK+DM N + S RP+L +
Sbjct: 164 NYILNLMTLLCAPVRDEAVRKLESITDPVQLLRGIFHVLGLMKMDMVNHTIQSFRPYLKE 223
Query: 793 QSVEYERKQFQELLEKQPNSLDFVTQWLEEAADDLV-------NQRYRNALPXXXXXXXX 951
S++YER +FQELL KQPN LD T+WL + A DL + +++
Sbjct: 224 HSIQYERAKFQELLNKQPNLLDCTTKWLTKTALDLTTAPSSSPDSPSSSSMAHSSPNWAV 283
Query: 952 XXXPRPDPAAVQNYAYLKLLKWDHLHRLFPETVLMDRSRFXXXXXXXXXXTVLGAVLLVT 1131
P V YL LL WD + FPET+LMD+ R +L +VLLV
Sbjct: 284 DNPQLPSSTMVLYQGYLNLLLWDLDSKEFPETLLMDKIRLQDMESQLKQLAILASVLLVA 343
Query: 1132 FSMAAPGISSRADFAEKLKMIVKILLTDMHQPSFHLEDALTAVGEKVCLEVSSCLSQCGF 1311
S + + S +F KLK I K L+ + + E+A+ +V E+V ++ L G
Sbjct: 344 RSFSGSALFSSTEFVNKLKHITKALMEEFNS---RPEEAMVSVSEQVSQKIHERLKDMGL 400
Query: 1312 SPLTPDKEAVLKGQIQAVASPDNPIRRIMDSRILTFLETHLASSHQKPLPTAPGGLGPVQ 1491
+ L+ +K+A L+GQ+Q +A +N +R I+D RI FL+ L Q+ L P GL ++
Sbjct: 401 TALSSEKKACLRGQLQNIAKKENRVRNIVDQRIHLFLKGCLVRGMQESLLDFPVGLTLIK 460
Query: 1492 KELEEVAVKFVRLVNYNKMVFSPYYDAILSKIL 1590
EL ++ KF L+ +N+ VFSPYYD IL I+
Sbjct: 461 GELTKLGWKFFNLMRHNQQVFSPYYDEILKDII 493
>ref|NP_001103549.1| t-complex 11 [Bos taurus].
Length = 298
Score = 206 bits (523), Expect = 7e-53
Identities = 109/241 (45%), Positives = 154/241 (63%), Gaps = 5/241 (2%)
Frame = +1
Query: 190 IKSGSPSTQRVQRPHSSPPRFVTVEELLETAKGVTNMA-----LAHEIVVNGDFRIKPVE 354
+K + R +P SS P L + + N L+ EI +N DFR++
Sbjct: 10 VKDPGDAESRPCKPESSGPTREDKSSLRDHPSRLRNTVNDASKLSSEIGMNRDFRMEEKV 69
Query: 355 LPEDSLEKRVKDIVHKAFWDCLSVQLSEDPPTYDRAIKLVGEIKETLLSFLLPGHTRLRN 534
LP SLE R+++ +H AFWD L +LS PP + A++L+ EIKE LLS LLP RLR+
Sbjct: 70 LPPGSLEGRIRETMHDAFWDHLKERLSATPPDFSCALELLKEIKEILLSLLLPRQNRLRS 129
Query: 535 QITEVLDLDLIKQEAENGALDISKLAEFIIGMMGTLCAPVRDEGVKKLKDIKEIVPLFRA 714
+I E LD+DLI QEAE+GAL++ L+++I+ MM LCAPVRDE V+KL++I + V L R
Sbjct: 130 EIEEALDMDLITQEAEHGALNVPHLSKYILNMMTLLCAPVRDEAVQKLENISDPVWLLRG 189
Query: 715 IFSVLDMMKVDMANFAVSSIRPHLMQQSVEYERKQFQELLEKQPNSLDFVTQWLEEAADD 894
IF VL +MK+DM N+ + S++P L + S++YER +FQ+LL KQP+ LD +WL AA
Sbjct: 190 IFQVLGLMKMDMVNYTIQSLQPQLQEHSIQYERAKFQDLLNKQPSLLDHTARWLTRAAAQ 249
Query: 895 L 897
L
Sbjct: 250 L 250
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 68,375,284
Number of extensions: 1908093
Number of successful extensions: 7823
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 7782
Number of HSP's successfully gapped: 6
Length of query: 591
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 483
Effective length of database: 14,107,870
Effective search space: 6814101210
Effective search space used: 6814101210
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LNG01_0046_G07
(1774 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_796164.1| T-complex protein 11-like protein 1 [Mus muscul... 787 0.0
Alignment gi|NP_666120.1| T-complex protein 11-like protein 2 [Mus muscul... 363 e-100
Alignment gi|NP_082228.2| t-complex 11 protein [Mus musculus]. 306 4e-83
Alignment gi|NP_001079024.1| T-complex protein 11 isoform 2 [Mus musculus]. 293 2e-79
Alignment gi|NP_038715.2| T-complex protein 11 isoform 1 [Mus musculus]. 293 2e-79
>ref|NP_796164.1| T-complex protein 11-like protein 1 [Mus musculus].
Length = 509
Score = 787 bits (2032), Expect = 0.0
Identities = 402/509 (78%), Positives = 441/509 (86%)
Frame = +1
Query: 73 MSENLDKSNINEAGKSKSNDSEQGLEDAVEGSDEALQKKIKSGSPSTQRVQRPHSSPPRF 252
MSENLDKS+++EAG++++ SEQGLE A+E SDE LQKK+KS SPS+QRV RPHSSP R
Sbjct: 1 MSENLDKSHVDEAGEAEAAASEQGLEGALECSDETLQKKVKSDSPSSQRVGRPHSSPARL 60
Query: 253 VTVEELLETAKGVTNMALAHEIVVNGDFRIKPVELPEDSLEKRVKDIVHKAFWDCLSVQL 432
VTVEELLETAKGVTNMALAHEIVV GDFRI VEL E SLEKRVK+IVHKAFWDCLSVQL
Sbjct: 61 VTVEELLETAKGVTNMALAHEIVVTGDFRINAVELAEGSLEKRVKEIVHKAFWDCLSVQL 120
Query: 433 SEDPPTYDRAIKLVGEIKETLLSFLLPGHTRLRNQITEVLDLDLIKQEAENGALDISKLA 612
SE+PPTYD AIKLVGEIKETLLSFLLPGHTRLRNQITEVLDL+LIKQEAENGALDISKLA
Sbjct: 121 SEEPPTYDHAIKLVGEIKETLLSFLLPGHTRLRNQITEVLDLELIKQEAENGALDISKLA 180
Query: 613 EFIIGMMGTLCAPVRDEGVKKLKDIKEIVPLFRAIFSVLDMMKVDMANFAVSSIRPHLMQ 792
EFIIGMMG LCAP RDE VKKLK IKEIVPLFRAIFSVLD+MKVDMANFA+SSIRPHLMQ
Sbjct: 181 EFIIGMMGILCAPARDEEVKKLKGIKEIVPLFRAIFSVLDLMKVDMANFAISSIRPHLMQ 240
Query: 793 QSVEYERKQFQELLEKQPNSLDFVTQWLEEAADDLVNQRYRNALPXXXXXXXXXXXPRPD 972
QSVEYER++FQE+LE+QPNSLDF TQWLEEA +DL++Q+Y++ALP P
Sbjct: 241 QSVEYERRKFQEVLERQPNSLDFATQWLEEATNDLLSQKYKHALPAGGGAAGSGDAPLLT 300
Query: 973 PAAVQNYAYLKLLKWDHLHRLFPETVLMDRSRFXXXXXXXXXXTVLGAVLLVTFSMAAPG 1152
P +VQN+AYLKLLKWDH R FPETVLMD+SRF VLGAVLLVTFS AAPG
Sbjct: 301 PVSVQNFAYLKLLKWDHFQRPFPETVLMDQSRFQELQLQLEQLAVLGAVLLVTFSTAAPG 360
Query: 1153 ISSRADFAEKLKMIVKILLTDMHQPSFHLEDALTAVGEKVCLEVSSCLSQCGFSPLTPDK 1332
IS ADFAEKLKM+VK LLTDMH PSFHLEDAL ++GEKVCLEVSSCLS CG SP + K
Sbjct: 361 ISGHADFAEKLKMMVKTLLTDMHLPSFHLEDALASIGEKVCLEVSSCLSLCGSSPFSVAK 420
Query: 1333 EAVLKGQIQAVASPDNPIRRIMDSRILTFLETHLASSHQKPLPTAPGGLGPVQKELEEVA 1512
E VLKGQIQA+ASP++PIRRIM+SRI TFLET+LAS HQKPLPT PGGLGP+QKELEEVA
Sbjct: 421 ETVLKGQIQALASPEDPIRRIMESRIFTFLETYLASGHQKPLPTVPGGLGPIQKELEEVA 480
Query: 1513 VKFVRLVNYNKMVFSPYYDAILSKILATS 1599
VKFVRLVNYNKMVF PYYDAILSK+L S
Sbjct: 481 VKFVRLVNYNKMVFCPYYDAILSKLLLRS 509
>ref|NP_666120.1| T-complex protein 11-like protein 2 [Mus musculus].
Length = 517
Score = 363 bits (931), Expect = e-100
Identities = 198/508 (38%), Positives = 302/508 (59%), Gaps = 2/508 (0%)
Frame = +1
Query: 73 MSENLDKSNINEAGKSKSNDSEQGLEDAVEGSDEALQKKIKSGSPSTQRVQRPHSSPPRF 252
M N +K ++E +S S +S + E SD ++ + S++ +SPPR
Sbjct: 1 MPFNGEKQCVSEDQQSDS-ESSRFAEGVASLSDYECSRQSFTSDSSSKSSSPASTSPPRG 59
Query: 253 VTVEELLETAKGVTNMALAHEIVVNGDFRIKPVELPEDSLEKRVKDIVHKAFWDCLSVQL 432
+ ++++ AK +++M LAHEI VN +F++K LPE+SL +VK +VH+AFWD L L
Sbjct: 60 LMFDDVMAAAKNLSDMTLAHEIAVNENFQLKQNALPENSLAGQVKRVVHQAFWDVLEADL 119
Query: 433 SEDPPTYDRAIKLVGEIKETLLSFLLPGHTRLRNQITEVLDLDLIKQEAENGALDISKLA 612
S +PP Y+ AIKL EI+E LLSFL PG RL +QI EVLD+DLI+Q+AE+ A+DI LA
Sbjct: 120 SAEPPQYEYAIKLFEEIREILLSFLTPGGNRLHSQICEVLDIDLIRQQAEHSAVDIQGLA 179
Query: 613 EFIIGMMGTLCAPVRDEGVKKLKDIKEIVPLFRAIFSVLDMMKVDMANFAVSSIRPHLMQ 792
++I MG +CAPVRDE +++LK IV + R IF VLD+M++DM NF + +IRPH+
Sbjct: 180 NYVITTMGKICAPVRDEDIRELKATTNIVEMLRQIFRVLDLMRMDMMNFVIRNIRPHIQH 239
Query: 793 QSVEYERKQFQELLEKQPNSLDFVTQWLEEAAD-DLVNQRYRNALPXXXXXXXXXXXPRP 969
VEYER +FQE++E+ PN+L T+WL+E+ D +L+++ P
Sbjct: 240 HLVEYERNKFQEVVEETPNALSQTTEWLKESIDKELLSE------TDVAPAAEHSSTPSL 293
Query: 970 DPAAVQNYAYLKLLKWDHLHRLFPETVLMDRSRFXXXXXXXXXXTVLGAVLLVTFSMAAP 1149
P V N YLKLL+WD+ ++ PET++ D R + V L+T +M
Sbjct: 294 SPLLVLNNCYLKLLQWDYQKKVLPETLMTDGPRLQELSEKLNQLKMTACVALITNNMVGA 353
Query: 1150 GISSRADFAEKLKMIVKILLTDMHQPSFHLEDALTAVGEKVCLEVSSCLSQCGFSPLTPD 1329
+ A +LK I +LL M++ +F+L++AL ++G + C EV+ L + G L +
Sbjct: 354 VTEGLPELANRLKRISAVLLEGMNKETFNLKEALHSIGVQTCAEVNKALEERGSPTLNAE 413
Query: 1330 KEAVLKGQIQAVASPDNPIRRIMDSRILTFLETHLA-SSHQKPLPTAPGGLGPVQKELEE 1506
+A L GQ+ ++ DNP+ +MD RI +++ L S QK +P PGGL +Q+ELE
Sbjct: 414 VQANLVGQLSSLEEKDNPVCTLMDKRIQLYMKGLLCLPSTQKSMPPVPGGLDVIQRELEV 473
Query: 1507 VAVKFVRLVNYNKMVFSPYYDAILSKIL 1590
+ ++ +VN NK V+ P+Y I K+L
Sbjct: 474 LGCQYANIVNLNKQVYGPFYANIFRKLL 501
>ref|NP_082228.2| t-complex 11 protein [Mus musculus].
Length = 503
Score = 306 bits (783), Expect = 4e-83
Identities = 171/432 (39%), Positives = 256/432 (59%), Gaps = 7/432 (1%)
Frame = +1
Query: 322 VNGDFRIKPVELPEDSLEKRVKDIVHKAFWDCLSVQLSEDPPTYDRAIKLVGEIKETLLS 501
V + I+ +LPEDS E + + ++ AFWD L QLS+ PP + ++L+ IK+ L++
Sbjct: 64 VASEIAIEKNDLPEDSPESQFVETMYNAFWDHLRDQLSQTPPDFSCVLELIKNIKQILMA 123
Query: 502 FLLPGHTRLRNQITEVLDLDLIKQEAENGALDISKLAEFIIGMMGTLCAPVRDEGVKKLK 681
LLP LRN+I EVLDLDL+KQE E+GALDI L+ +I+ +M +CAP+RDE VK+L+
Sbjct: 124 LLLPRQNLLRNEIEEVLDLDLLKQETEHGALDILHLSHYILNLMALMCAPIRDEAVKELE 183
Query: 682 DIKEIVPLFRAIFSVLDMMKVDMANFAVSSIRPHLMQQSVEYERKQFQELLEKQPNSLDF 861
+IK+ V L R IF VL +MK+DM N+ + +IRP+L + S++YER +FQELL+KQP+ LD
Sbjct: 184 NIKDPVQLLRGIFQVLGLMKMDMVNYTIKNIRPYLQEHSIQYERAKFQELLDKQPDRLDC 243
Query: 862 VTQWLEEAADDLVNQ----RYRNALPXXXXXXXXXXXPRPDP---AAVQNYAYLKLLKWD 1020
T+W+ AA +++ + + P PDP V YL L+ D
Sbjct: 244 TTKWMTRAATEIITSLSSLSVTSCISSGVISSFPTPKPDPDPPSLTTVLYQGYLNLVLRD 303
Query: 1021 HLHRLFPETVLMDRSRFXXXXXXXXXXTVLGAVLLVTFSMAAPGISSRADFAEKLKMIVK 1200
H + FPET+LMD++R T+L +VLLV S + + S +F +KLK I K
Sbjct: 304 HGNEEFPETLLMDKARLQTMRSKFRHLTILASVLLVARSFSCGVLFSSPEFVDKLKCITK 363
Query: 1201 ILLTDMHQPSFHLEDALTAVGEKVCLEVSSCLSQCGFSPLTPDKEAVLKGQIQAVASPDN 1380
L D S E+++ +V E+V E+ L G + L+ + A L GQ++ +A +N
Sbjct: 364 ALTEDF---SSKPEESMLSVSEQVSQEIHQGLKDTGLTALSSENRASLVGQLRNIAKKEN 420
Query: 1381 PIRRIMDSRILTFLETHLASSHQKPLPTAPGGLGPVQKELEEVAVKFVRLVNYNKMVFSP 1560
IR I++ R+ FL+ L Q+ L PG ++ EL E+ KFV L+++N+ VFSP
Sbjct: 421 CIRIIIEQRMHLFLKCCLIRGMQESLLDFPGCFLFIEPELAELGWKFVNLMHHNQHVFSP 480
Query: 1561 YYDAILSKILAT 1596
YY IL I++T
Sbjct: 481 YYAEILKNIIST 492
>ref|NP_001079024.1| T-complex protein 11 isoform 2 [Mus musculus].
Length = 488
Score = 293 bits (751), Expect = 2e-79
Identities = 163/427 (38%), Positives = 249/427 (58%), Gaps = 6/427 (1%)
Frame = +1
Query: 331 DFRIKPVELPEDSLEKRVKDIVHKAFWDCLSVQLSEDPPTYDRAIKLVGEIKETLLSFLL 510
D +++ L SL+ +VKD + FW+ L+ QLS PP + A++L+ EIKE LLS LL
Sbjct: 53 DCQLEERSLSSSSLKGKVKDTMPSDFWEHLNEQLSAVPPDFSCALELLKEIKEILLSLLL 112
Query: 511 PGHTRLRNQITEVLDLDLIKQEAENGALDISKLAEFIIGMMGTLCAPVRDEGVKKLKDIK 690
P +RL+N+I E LD++ ++Q+A+ G L++S L+++I+ MM LCAP+RDE V++L++I
Sbjct: 113 PRQSRLKNEIEEALDMEFLQQQADRGDLNVSYLSKYILNMMVLLCAPIRDEAVQRLENIS 172
Query: 691 EIVPLFRAIFSVLDMMKVDMANFAVSSIRPHLMQQSVEYERKQFQELLEKQPNSLDFVTQ 870
+ V L R IF VL MK+DM N+ + S++P L + SV++ER QFQE L K+P L+ T+
Sbjct: 173 DPVRLLRGIFQVLGQMKMDMVNYTIQSLQPQLQEHSVQFERAQFQERLNKEPRLLNHTTK 232
Query: 871 WLEEAADDLV-----NQRYRNALPXXXXXXXXXXXPRP-DPAAVQNYAYLKLLKWDHLHR 1032
WL +AA L+ + ++ P P PA V + +L LL WD +
Sbjct: 233 WLTQAATQLIAPSASSSDLQDCSSSAGPSPSDVAVPEPLSPAMVLSQGFLNLLTWDPENE 292
Query: 1033 LFPETVLMDRSRFXXXXXXXXXXTVLGAVLLVTFSMAAPGISSRADFAEKLKMIVKILLT 1212
FPET++ DR R T+L +VLLV S + G+ S F +KLK I K L+
Sbjct: 293 EFPETLVADRPRLQELESQQSQLTILASVLLVASSFSDSGLFSSPQFVDKLKQITKSLVE 352
Query: 1213 DMHQPSFHLEDALTAVGEKVCLEVSSCLSQCGFSPLTPDKEAVLKGQIQAVASPDNPIRR 1392
D + E+ + +V E+V EV L G + L+ + A L GQ+Q +A +N +R
Sbjct: 353 DFNS---RPEEVMQSVSEQVVEEVHQGLESMGLAALSSENTASLVGQLQNIAKKENCVRS 409
Query: 1393 IMDSRILTFLETHLASSHQKPLPTAPGGLGPVQKELEEVAVKFVRLVNYNKMVFSPYYDA 1572
++D RI FL+ Q+ L PGGL ++ EL E+ KFV L ++N+ VF+PYY
Sbjct: 410 VIDQRIHLFLKCCFVLGVQRSLLDLPGGLTLIEAELAELGQKFVSLTHHNQQVFAPYYTE 469
Query: 1573 ILSKILA 1593
IL +++
Sbjct: 470 ILKTLIS 476
>ref|NP_038715.2| T-complex protein 11 isoform 1 [Mus musculus].
Length = 567
Score = 293 bits (751), Expect = 2e-79
Identities = 163/427 (38%), Positives = 249/427 (58%), Gaps = 6/427 (1%)
Frame = +1
Query: 331 DFRIKPVELPEDSLEKRVKDIVHKAFWDCLSVQLSEDPPTYDRAIKLVGEIKETLLSFLL 510
D +++ L SL+ +VKD + FW+ L+ QLS PP + A++L+ EIKE LLS LL
Sbjct: 132 DCQLEERSLSSSSLKGKVKDTMPSDFWEHLNEQLSAVPPDFSCALELLKEIKEILLSLLL 191
Query: 511 PGHTRLRNQITEVLDLDLIKQEAENGALDISKLAEFIIGMMGTLCAPVRDEGVKKLKDIK 690
P +RL+N+I E LD++ ++Q+A+ G L++S L+++I+ MM LCAP+RDE V++L++I
Sbjct: 192 PRQSRLKNEIEEALDMEFLQQQADRGDLNVSYLSKYILNMMVLLCAPIRDEAVQRLENIS 251
Query: 691 EIVPLFRAIFSVLDMMKVDMANFAVSSIRPHLMQQSVEYERKQFQELLEKQPNSLDFVTQ 870
+ V L R IF VL MK+DM N+ + S++P L + SV++ER QFQE L K+P L+ T+
Sbjct: 252 DPVRLLRGIFQVLGQMKMDMVNYTIQSLQPQLQEHSVQFERAQFQERLNKEPRLLNHTTK 311
Query: 871 WLEEAADDLV-----NQRYRNALPXXXXXXXXXXXPRP-DPAAVQNYAYLKLLKWDHLHR 1032
WL +AA L+ + ++ P P PA V + +L LL WD +
Sbjct: 312 WLTQAATQLIAPSASSSDLQDCSSSAGPSPSDVAVPEPLSPAMVLSQGFLNLLTWDPENE 371
Query: 1033 LFPETVLMDRSRFXXXXXXXXXXTVLGAVLLVTFSMAAPGISSRADFAEKLKMIVKILLT 1212
FPET++ DR R T+L +VLLV S + G+ S F +KLK I K L+
Sbjct: 372 EFPETLVADRPRLQELESQQSQLTILASVLLVASSFSDSGLFSSPQFVDKLKQITKSLVE 431
Query: 1213 DMHQPSFHLEDALTAVGEKVCLEVSSCLSQCGFSPLTPDKEAVLKGQIQAVASPDNPIRR 1392
D + E+ + +V E+V EV L G + L+ + A L GQ+Q +A +N +R
Sbjct: 432 DFNS---RPEEVMQSVSEQVVEEVHQGLESMGLAALSSENTASLVGQLQNIAKKENCVRS 488
Query: 1393 IMDSRILTFLETHLASSHQKPLPTAPGGLGPVQKELEEVAVKFVRLVNYNKMVFSPYYDA 1572
++D RI FL+ Q+ L PGGL ++ EL E+ KFV L ++N+ VF+PYY
Sbjct: 489 VIDQRIHLFLKCCFVLGVQRSLLDLPGGLTLIEAELAELGQKFVSLTHHNQQVFAPYYTE 548
Query: 1573 ILSKILA 1593
IL +++
Sbjct: 549 ILKTLIS 555
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 59,328,672
Number of extensions: 1615403
Number of successful extensions: 6401
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6349
Number of HSP's successfully gapped: 5
Length of query: 591
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 484
Effective length of database: 12,403,707
Effective search space: 6003394188
Effective search space used: 6003394188
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LNG01_0046_G07
(1774 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003353962.1| PREDICTED: t-complex protein 11-like protein... 416 e-116
Alignment gi|XP_003126140.2| PREDICTED: t-complex protein 11-like protein... 324 1e-88
Alignment gi|XP_003353963.1| PREDICTED: t-complex protein 11-like protein... 316 2e-86
Alignment gi|XP_001926961.1| PREDICTED: t-complex protein 11 homolog [Sus... 302 4e-82
Alignment gi|XP_001926709.3| PREDICTED: t-complex protein 11 homolog [Sus... 297 1e-80
Alignment gi|XP_003355420.1| PREDICTED: t-complex protein 11-like protein... 57 4e-08
>ref|XP_003353962.1| PREDICTED: t-complex protein 11-like protein 1-like [Sus scrofa].
Length = 259
Score = 416 bits (1068), Expect = e-116
Identities = 213/215 (99%), Positives = 213/215 (99%)
Frame = +1
Query: 73 MSENLDKSNINEAGKSKSNDSEQGLEDAVEGSDEALQKKIKSGSPSTQRVQRPHSSPPRF 252
MSENLDKSNINEAGKSKSNDSEQGLEDAVEGSDEALQKKIKSGSPSTQRVQRPHSSPPRF
Sbjct: 1 MSENLDKSNINEAGKSKSNDSEQGLEDAVEGSDEALQKKIKSGSPSTQRVQRPHSSPPRF 60
Query: 253 VTVEELLETAKGVTNMALAHEIVVNGDFRIKPVELPEDSLEKRVKDIVHKAFWDCLSVQL 432
VTVEELLETAKGVTNMALAHEIVVNGDFRIKPVELPEDSLEKRVKDIVHKAFWDCLSVQL
Sbjct: 61 VTVEELLETAKGVTNMALAHEIVVNGDFRIKPVELPEDSLEKRVKDIVHKAFWDCLSVQL 120
Query: 433 SEDPPTYDRAIKLVGEIKETLLSFLLPGHTRLRNQITEVLDLDLIKQEAENGALDISKLA 612
SEDPPTYDRAIKLVGEIKETLLSFLLPGHTRLRNQITEVLDLDLIKQEAENGALDISKLA
Sbjct: 121 SEDPPTYDRAIKLVGEIKETLLSFLLPGHTRLRNQITEVLDLDLIKQEAENGALDISKLA 180
Query: 613 EFIIGMMGTLCAPVRDEGVKKLKDIKEIVPLFRAI 717
EFIIGMMGTLCAPVRDE VKKLKDIKEIVPLFR I
Sbjct: 181 EFIIGMMGTLCAPVRDEEVKKLKDIKEIVPLFRHI 215
>ref|XP_003126140.2| PREDICTED: t-complex protein 11-like protein 2-like [Sus scrofa].
Length = 500
Score = 324 bits (830), Expect = 1e-88
Identities = 171/409 (41%), Positives = 253/409 (61%), Gaps = 1/409 (0%)
Frame = +1
Query: 367 SLEKRVKDIVHKAFWDCLSVQLSEDPPTYDRAIKLVGEIKETLLSFLLPGHTRLRNQITE 546
SL RV+ IVH+AFWD L +L+ +PP Y+ AIKL EI+E LLSFL PG RLRNQI E
Sbjct: 79 SLAGRVRHIVHQAFWDVLESELNAEPPEYEHAIKLFEEIREILLSFLTPGGNRLRNQICE 138
Query: 547 VLDLDLIKQEAENGALDISKLAEFIIGMMGTLCAPVRDEGVKKLKDIKEIVPLFRAIFSV 726
VLD DLI+Q+AE+ A+DI LA ++I MG LCAPVRD+ +++LK IV + R IF V
Sbjct: 139 VLDTDLIRQQAEHSAVDIQGLANYVISTMGKLCAPVRDDDIRELKATGNIVEVLRQIFHV 198
Query: 727 LDMMKVDMANFAVSSIRPHLMQQSVEYERKQFQELLEKQPNSLDFVTQWLEEAADDLVNQ 906
LD+MK+DM NF + S+RPHL +Q V+YER +FQE+LE+ P++LD T+W++E+ + +
Sbjct: 199 LDLMKMDMVNFTIRSLRPHLQRQLVDYERTKFQEILEETPSALDQTTEWIKESVHEELLS 258
Query: 907 RYRNALPXXXXXXXXXXXPRPDPAAVQNYAYLKLLKWDHLHRLFPETVLMDRSRFXXXXX 1086
AL P P V N +YLKLL+WD+ + PET++ D +R
Sbjct: 259 LSEAAL---TPGAENSSKPSLSPTLVLNNSYLKLLQWDYQKKELPETLMTDGARLQELTE 315
Query: 1087 XXXXXTVLGAVLLVTFSMAAPGISSRADFAEKLKMIVKILLTDMHQPSFHLEDALTAVGE 1266
++ + L+T +M + A KLK I +LL M++ +F+L++ L ++G
Sbjct: 316 KLNQLKMIACLSLITNNMVGALTEGLPELAIKLKRISAVLLEGMNKETFNLKEVLNSIGI 375
Query: 1267 KVCLEVSSCLSQCGFSPLTPDKEAVLKGQIQAVASPDNPIRRIMDSRILTFLETHLA-SS 1443
+ C+EV+ L + G L + +A L GQ ++ DNP+ ++D RI ++++ L S
Sbjct: 376 QTCVEVNKTLMERGLPALNAEVQANLVGQFSSIEEEDNPVWSLIDKRIQLYMKSLLCLPS 435
Query: 1444 HQKPLPTAPGGLGPVQKELEEVAVKFVRLVNYNKMVFSPYYDAILSKIL 1590
QK +P PGGL +Q+ELE + ++ +VN NK V+ P+Y IL K+L
Sbjct: 436 PQKCMPPVPGGLTVIQQELEVLGSQYANIVNLNKQVYGPFYANILRKLL 484
>ref|XP_003353963.1| PREDICTED: t-complex protein 11-like protein 1-like [Sus scrofa].
Length = 269
Score = 316 bits (810), Expect = 2e-86
Identities = 161/184 (87%), Positives = 163/184 (88%)
Frame = +1
Query: 847 NSLDFVTQWLEEAADDLVNQRYRNALPXXXXXXXXXXXPRPDPAAVQNYAYLKLLKWDHL 1026
+SLDFVTQWLEEAADDL+NQRYRNALP PRPDPAAVQNYAYLKLLKWDHL
Sbjct: 52 DSLDFVTQWLEEAADDLMNQRYRNALPAGGGAAGSEASPRPDPAAVQNYAYLKLLKWDHL 111
Query: 1027 HRLFPETVLMDRSRFXXXXXXXXXXTVLGAVLLVTFSMAAPGISSRADFAEKLKMIVKIL 1206
HRLFPETVLMDRSRF TVLGAVLLVTFSMAAPGISSRADFAEKLKMIVKIL
Sbjct: 112 HRLFPETVLMDRSRFQELQLQLEQLTVLGAVLLVTFSMAAPGISSRADFAEKLKMIVKIL 171
Query: 1207 LTDMHQPSFHLEDALTAVGEKVCLEVSSCLSQCGFSPLTPDKEAVLKGQIQAVASPDNPI 1386
LTDMHQPSFHLEDALTAVGEKVCLEVSSCLSQCGFSPLTPDKEAVLKGQIQAVASPDNPI
Sbjct: 172 LTDMHQPSFHLEDALTAVGEKVCLEVSSCLSQCGFSPLTPDKEAVLKGQIQAVASPDNPI 231
Query: 1387 RRIM 1398
RRIM
Sbjct: 232 RRIM 235
>ref|XP_001926961.1| PREDICTED: t-complex protein 11 homolog [Sus scrofa].
Length = 479
Score = 302 bits (773), Expect = 4e-82
Identities = 176/456 (38%), Positives = 255/456 (55%), Gaps = 7/456 (1%)
Frame = +1
Query: 244 PRFVTVEELLETAKGVTNMALAHEIVVNGDFRIKPVELPEDSLEKRVKDIVHKAFWDCLS 423
P ++V L++ V+ L+ +I +N DF + LP SLE +VK+ +H AFWD L
Sbjct: 15 PSALSVTGLIDKVNDVSQ--LSEKIGMNRDFHTEEKVLPPSSLEGKVKETMHNAFWDHLK 72
Query: 424 VQLSEDPPTYDRAIKLVGEIKETLLSFLLPGHTRLRNQITEVLDLDLIKQEAENGALDIS 603
QL PP + A++L+ EIKE LLS LLP RLR++I E LD++L+ + AE GAL++
Sbjct: 73 EQLLATPPDFSCALELLKEIKEILLSLLLPRQNRLRSEIEEALDVNLLGRAAEQGALNVP 132
Query: 604 KLAEFIIGMMGTLCAPVRDEGVKKLKDIKEIVPLFRAIFSVLDMMKVDMANFAVSSIRPH 783
++++I+ M LCAPVRDE V+KL+ I + V L R IF VL +MK+DM N+ + S++P
Sbjct: 133 HVSKYILNTMTLLCAPVRDEAVQKLETISDPVRLLRGIFQVLGLMKMDMVNYTIQSLQPQ 192
Query: 784 LMQQSVEYERKQFQELLEKQPNSLDFVTQWLEEAADDLVN------QRYRNALPXXXXXX 945
L + +++ ER +FQELL KQP+ LD T+WL +AA DL ++
Sbjct: 193 LQEHNIQCERARFQELLNKQPSLLDHTTRWLTQAATDLATPPPPCPDTPDSSSATCLPAG 252
Query: 946 XXXXXPRP-DPAAVQNYAYLKLLKWDHLHRLFPETVLMDRSRFXXXXXXXXXXTVLGAVL 1122
P P P V + +L LL WD FPET+ DR+R TVL +VL
Sbjct: 253 EAAISPEPLSPKMVLSQGFLNLLLWDGEDEAFPETLRTDRARLQELEAQLRRLTVLASVL 312
Query: 1123 LVTFSMAAPGISSRADFAEKLKMIVKILLTDMHQPSFHLEDALTAVGEKVCLEVSSCLSQ 1302
LV S + + F +KLK K+LL + S E+A+ V E+V E+ L
Sbjct: 313 LVANSFSGSVLFGSPQFVDKLKRTTKVLLEEF--GSRPEEEAMLTVSEQVTQEIHQSLKN 370
Query: 1303 CGFSPLTPDKEAVLKGQIQAVASPDNPIRRIMDSRILTFLETHLASSHQKPLPTAPGGLG 1482
G +PL+ D A L GQ+Q +A +N +R ++D RI FL+ L Q+ L PGGL
Sbjct: 371 MGLAPLSSDNTASLIGQLQNIAKKENCVRSVIDQRIHLFLKCCLILGVQRSLLDLPGGLT 430
Query: 1483 PVQKELEEVAVKFVRLVNYNKMVFSPYYDAILSKIL 1590
++ EL E+ KF L +N+ VF PYY IL ++
Sbjct: 431 LIEAELAELGQKFANLTQHNQQVFGPYYTEILKTLI 466
>ref|XP_001926709.3| PREDICTED: t-complex protein 11 homolog [Sus scrofa].
Length = 441
Score = 297 bits (760), Expect = 1e-80
Identities = 169/430 (39%), Positives = 242/430 (56%), Gaps = 7/430 (1%)
Frame = +1
Query: 322 VNGDFRIKPVELPEDSLEKRVKDIVHKAFWDCLSVQLSEDPPTYDRAIKLVGEIKETLLS 501
+N DF + LP SLE +VK+ +H AFWD L QL PP + A++L+ EIKE LLS
Sbjct: 1 MNRDFHTEEKVLPPSSLEGKVKETMHNAFWDHLKEQLLATPPDFSCALELLKEIKEILLS 60
Query: 502 FLLPGHTRLRNQITEVLDLDLIKQEAENGALDISKLAEFIIGMMGTLCAPVRDEGVKKLK 681
LLP RLR++I E LD++L+ + AE GAL++ ++++I+ M LCAPVRDE V+KL+
Sbjct: 61 LLLPRQNRLRSEIEEALDVNLLGRAAEQGALNVPHVSKYILNTMTLLCAPVRDEAVQKLE 120
Query: 682 DIKEIVPLFRAIFSVLDMMKVDMANFAVSSIRPHLMQQSVEYERKQFQELLEKQPNSLDF 861
I + V L R IF VL +MK+DM N+ + S++P L + +++ ER +FQELL KQP+ LD
Sbjct: 121 TISDPVRLLRGIFQVLGLMKMDMVNYTIQSLQPQLQEHNIQCERARFQELLNKQPSLLDH 180
Query: 862 VTQWLEEAADDLVN------QRYRNALPXXXXXXXXXXXPRP-DPAAVQNYAYLKLLKWD 1020
T+WL +AA DL ++ P P P + + +L LL WD
Sbjct: 181 TTRWLTQAATDLATPPPPCPDTPDSSSATCLPAGEAAISPEPLSPKMILSQGFLNLLLWD 240
Query: 1021 HLHRLFPETVLMDRSRFXXXXXXXXXXTVLGAVLLVTFSMAAPGISSRADFAEKLKMIVK 1200
FPET+ DR+R TVL +VLLV S + + F +KLK K
Sbjct: 241 GEDEAFPETLRTDRARLQELEAQLHRLTVLASVLLVANSFSGSVLFGSPQFVDKLKRTTK 300
Query: 1201 ILLTDMHQPSFHLEDALTAVGEKVCLEVSSCLSQCGFSPLTPDKEAVLKGQIQAVASPDN 1380
+LL + S E+A+ V E+V E+ L G +PL+ D A L GQ+Q +A +N
Sbjct: 301 VLLEEF--GSRPEEEAMLTVSEQVTQEIHQSLKNMGLAPLSSDNTASLIGQLQNIAKKEN 358
Query: 1381 PIRRIMDSRILTFLETHLASSHQKPLPTAPGGLGPVQKELEEVAVKFVRLVNYNKMVFSP 1560
+R ++D RI FL+ L Q+ L PGGL ++ EL E+ KF L +N+ VF P
Sbjct: 359 CVRSVIDQRIHLFLKCCLILGVQRSLLDLPGGLTLIEAELAELGQKFANLTQHNQQVFGP 418
Query: 1561 YYDAILSKIL 1590
YY IL ++
Sbjct: 419 YYTEILKTLI 428
>ref|XP_003355420.1| PREDICTED: t-complex protein 11-like protein 2-like [Sus scrofa].
Length = 147
Score = 56.6 bits (135), Expect = 4e-08
Identities = 28/94 (29%), Positives = 52/94 (55%)
Frame = +1
Query: 1105 VLGAVLLVTFSMAAPGISSRADFAEKLKMIVKILLTDMHQPSFHLEDALTAVGEKVCLEV 1284
++ + L+T +M + A KLK I +LL M++ +F+L++ L ++G + C+EV
Sbjct: 19 MIACLSLITNNMVGALTEGLPELAIKLKRISAVLLEGMNKETFNLKEVLNSIGIQTCVEV 78
Query: 1285 SSCLSQCGFSPLTPDKEAVLKGQIQAVASPDNPI 1386
+ L + G L + +A L GQ ++ DNP+
Sbjct: 79 NKTLMERGLPALNAEVQANLVGQFSSIEEEDNPV 112
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 44,086,222
Number of extensions: 1227231
Number of successful extensions: 5158
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5128
Number of HSP's successfully gapped: 6
Length of query: 591
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 486
Effective length of database: 8,729,747
Effective search space: 4242657042
Effective search space used: 4242657042
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LNG01_0046_G07
(1774 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 712 0.0
>Sscrofa_Chr02
|| Length = 162569375
Score = 712 bits (359), Expect = 0.0
Identities = 359/359 (100%)
Strand = Plus / Plus
Query: 1399 gattcccgaatcttgactttcttagaaacccaccttgcctcaagtcatcagaagccgttg 1458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30395023 gattcccgaatcttgactttcttagaaacccaccttgcctcaagtcatcagaagccgttg 30395082
Query: 1459 cccacagcccctggggggttgggtccggttcagaaggagctggaggaagtcgccgttaaa 1518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30395083 cccacagcccctggggggttgggtccggttcagaaggagctggaggaagtcgccgttaaa 30395142
Query: 1519 ttcgttcgcctggtcaactataacaagatggtcttcagcccctactatgatgccatcctc 1578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30395143 ttcgttcgcctggtcaactataacaagatggtcttcagcccctactatgatgccatcctc 30395202
Query: 1579 agtaagatcctggccacgtcctaaggccggtattacccccttgactcagaatacctgttc 1638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30395203 agtaagatcctggccacgtcctaaggccggtattacccccttgactcagaatacctgttc 30395262
Query: 1639 tcagctgtaatgttgctttggaaaatggatatttagtccagttgtattaacagcccagac 1698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30395263 tcagctgtaatgttgctttggaaaatggatatttagtccagttgtattaacagcccagac 30395322
Query: 1699 cccaaaaggaaatattgtgtatcactgttgaaaagacttgaaaaatgcactgaattctc 1757
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30395323 cccaaaaggaaatattgtgtatcactgttgaaaagacttgaaaaatgcactgaattctc 30395381
Score = 436 bits (220), Expect = e-119
Identities = 223/224 (99%)
Strand = Plus / Plus
Query: 488 agactctcttatctttcttgctgcctggtcacactagactgagaaaccagattacagaag 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30369261 agactctcttatctttcttgctgcctggtcacactagactgagaaaccagattacagaag 30369320
Query: 548 tcttggatctggatctgataaagcaggaggcagagaatggggccttggacatttccaagc 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30369321 tcttggatctggatctgataaagcaggaggcagagaatggggccttggacatttccaagc 30369380
Query: 608 tggcggaattcattatcggcatgatggggacactgtgtgcacctgttcgagatgagggag 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 30369381 tggcggaattcattatcggcatgatggggacactgtgtgcacctgttcgagatgaggaag 30369440
Query: 668 ttaagaaactaaaggacattaaggaaattgtaccccttttcagg 711
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30369441 ttaagaaactaaaggacattaaggaaattgtaccccttttcagg 30369484
Score = 375 bits (189), Expect = e-101
Identities = 195/197 (98%)
Strand = Plus / Plus
Query: 848 attccctggactttgtcactcagtggctggaagaagccgcagatgacctcgtgaatcaga 907
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 30376735 attccctggactttgtcactcagtggctggaagaagccgcagatgacctcatgaatcaga 30376794
Query: 908 ggtatagaaatgccctaccagctgggggaggggcggctggctctgaggccagtcccaggc 967
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30376795 ggtatagaaatgccctgccagctgggggaggggcggctggctctgaggccagtcccaggc 30376854
Query: 968 cagaccctgctgcggtccagaattatgcgtacctgaagcttctgaagtgggaccacctgc 1027
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30376855 cagaccctgctgcggtccagaattatgcgtacctgaagcttctgaagtgggaccacctgc 30376914
Query: 1028 acagacttttccctgaa 1044
|||||||||||||||||
Sbjct: 30376915 acagacttttccctgaa 30376931
Score = 361 bits (182), Expect = 9e-97
Identities = 182/182 (100%)
Strand = Plus / Plus
Query: 1045 acagttttgatggatcgttctcgctttcaagagctgcagcttcagctggaacagctgact 1104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30381639 acagttttgatggatcgttctcgctttcaagagctgcagcttcagctggaacagctgact 30381698
Query: 1105 gtcctgggggccgtgttgctggtcacgttcagcatggcagccccaggaatttccagccgg 1164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30381699 gtcctgggggccgtgttgctggtcacgttcagcatggcagccccaggaatttccagccgg 30381758
Query: 1165 gctgactttgctgagaaacttaagatgattgtgaagattctgctcacggatatgcatcag 1224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30381759 gctgactttgctgagaaacttaagatgattgtgaagattctgctcacggatatgcatcag 30381818
Query: 1225 cc 1226
||
Sbjct: 30381819 cc 30381820
Score = 343 bits (173), Expect = 2e-91
Identities = 173/173 (100%)
Strand = Plus / Plus
Query: 1227 ctccttccatctggaggacgccctcactgccgttggggagaaggtctgcctggaggtgag 1286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30383621 ctccttccatctggaggacgccctcactgccgttggggagaaggtctgcctggaggtgag 30383680
Query: 1287 cagctgcctttcccagtgtgggttcagtcccctcaccccggacaaggaggccgtgctcaa 1346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30383681 cagctgcctttcccagtgtgggttcagtcccctcaccccggacaaggaggccgtgctcaa 30383740
Query: 1347 gggccagatccaggctgtggccagtcccgacaaccccatccgcaggatcatgg 1399
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30383741 gggccagatccaggctgtggccagtcccgacaaccccatccgcaggatcatgg 30383793
Score = 333 bits (168), Expect = 2e-88
Identities = 182/189 (96%)
Strand = Plus / Plus
Query: 47 aggaaggtgaatgaacttaattgagaatgtctgaaaaccttgacaagtccaatataaatg 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30353848 aggaaggtgaatgaacttaattgagaatgtctgaaaaccttgacaagtccaatataaatg 30353907
Query: 107 aagcaggaaaatcaaaatcaaatgattctgagcaaggccttgaagatgctgtggaaggtt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30353908 aagcaggaaaatcaaaatcaaatgattctgagcaaggccttgaagatgctgtggaaggtt 30353967
Query: 167 ctgatgaagctttacagnnnnnnntaaagtcgggctctcctagcacccagagagtgcaaa 226
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 30353968 ctgatgaagctttacagaaaaaaataaagtcgggctctcctagcacccagagagtgcaaa 30354027
Query: 227 gacctcact 235
|||||||||
Sbjct: 30354028 gacctcact 30354036
Score = 264 bits (133), Expect = 2e-67
Identities = 133/133 (100%)
Strand = Plus / Plus
Query: 236 ccagtcctcctcgattcgtgacagttgaagaacttctagagacagctaaaggagtcacta 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30366335 ccagtcctcctcgattcgtgacagttgaagaacttctagagacagctaaaggagtcacta 30366394
Query: 296 acatggccctcgcccatgaaattgttgtgaatggagattttcggattaaaccagtcgaat 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30366395 acatggccctcgcccatgaaattgttgtgaatggagattttcggattaaaccagtcgaat 30366454
Query: 356 tacctgaggacag 368
|||||||||||||
Sbjct: 30366455 tacctgaggacag 30366467
Score = 246 bits (124), Expect = 4e-62
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 366 cagcttggagaagagagtaaaggacattgtacataaagctttctgggattgcttgagcgt 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30367886 cagcttggagaagagagtaaaggacattgtacataaagctttctgggattgcttgagcgt 30367945
Query: 426 ccagctaagtgaagaccccccaacatatgaccgggccatcaaacttgttggtgagatcaa 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30367946 ccagctaagtgaagaccccccaacatatgaccgggccatcaaacttgttggtgagatcaa 30368005
Query: 486 agag 489
||||
Sbjct: 30368006 agag 30368009
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 54,148,246
Number of extensions: 393
Number of successful extensions: 393
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 392
Number of HSP's successfully gapped: 8
Length of query: 1774
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1752
Effective length of database: 2,808,408,574
Effective search space: 4920331821648
Effective search space used: 4920331821648
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)