Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LNG01_0073_F10
(1199 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001012693.1| major histocompatibility complex, class II, ... 376 e-104
Alignment gi|NP_001013619.3| major histocompatibility complex, class II, ... 371 e-103
Alignment gi|XP_002702914.1| PREDICTED: BOLA-DQA2 protein-like [Bos tauru... 367 e-102
Alignment gi|NP_001073045.1| major histocompatibility complex, class II, ... 358 7e-99
Alignment gi|NP_001012699.1| major histocompatibility complex, class II, ... 344 1e-94
Alignment gi|NP_001012696.1| major histocompatibility complex, class II, ... 312 4e-85
Alignment gi|NP_001192849.1| HLA class II histocompatibility antigen, DO ... 242 4e-64
Alignment gi|XP_002697222.1| PREDICTED: MHC class II antigen-like [Bos ta... 242 4e-64
Alignment gi|XP_002702869.1| PREDICTED: MHC class II antigen-like [Bos ta... 229 3e-60
Alignment gi|NP_001012695.1| major histocompatibility complex, class II, ... 228 8e-60
>ref|NP_001012693.1| major histocompatibility complex, class II, DQ alpha 5 [Bos
taurus].
Length = 255
Score = 376 bits (966), Expect = e-104
Identities = 184/255 (72%), Positives = 201/255 (78%)
Frame = +1
Query: 70 MVPGRVLMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGDEEFYV 249
MV R L+ G LALT +MS GGEDI ADHV YG+++YQSYGPSG YTHEFDGDE+FYV
Sbjct: 1 MVLNRALILGTLALTTMMSPSGGEDIVADHVGIYGISIYQSYGPSGQYTHEFDGDEQFYV 60
Query: 250 DLGKKETVWQLPLFSKFRSFDPQGALRNIATAKHNLNILIKRSNNTAAVNQVPEVTVFPK 429
DL KKET WQLPLFS+ SFDPQ ALRNIA K +++ L K SN+TAA N+VPEVTVF K
Sbjct: 61 DLEKKETAWQLPLFSRMLSFDPQLALRNIAIMKLHVDFLTKFSNSTAATNKVPEVTVFSK 120
Query: 430 SPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFL 609
SPVMLGQPNTLICHVDNIFPPVINITWL+NGHSVTEG SETSFL ++D+SFLKI YL FL
Sbjct: 121 SPVMLGQPNTLICHVDNIFPPVINITWLRNGHSVTEGVSETSFLIRSDYSFLKIKYLAFL 180
Query: 610 PSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETXXXXXXXXXXXXXXXXXXXXXX 789
PSDDD YDCKVEHWGLD+PLLKHWEPEIPAPMSELTET
Sbjct: 181 PSDDDIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCTLGLTMGLVGITVGTIFII 240
Query: 790 QGLRSGGPSRHQGSL 834
QGLRSG PSRHQG L
Sbjct: 241 QGLRSGDPSRHQGPL 255
>ref|NP_001013619.3| major histocompatibility complex, class II, DQ alpha, type 1 [Bos
taurus].
Length = 255
Score = 371 bits (952), Expect = e-103
Identities = 178/255 (69%), Positives = 198/255 (77%)
Frame = +1
Query: 70 MVPGRVLMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGDEEFYV 249
MV R L+ GAL LT + S CGGEDI ADH+ +YG + YQS+GPSG Y HEFDGDE FYV
Sbjct: 1 MVLNRALILGALTLTTMTSLCGGEDIVADHIGTYGADFYQSHGPSGQYIHEFDGDELFYV 60
Query: 250 DLGKKETVWQLPLFSKFRSFDPQGALRNIATAKHNLNILIKRSNNTAAVNQVPEVTVFPK 429
DLGKKETVWQLP+F + SF+ Q AL IA AKH L++L KRSN T +N+VPEVTVF K
Sbjct: 61 DLGKKETVWQLPMFGELTSFEAQDALNEIAKAKHTLDVLTKRSNFTPVINEVPEVTVFSK 120
Query: 430 SPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFL 609
SP+MLGQPNTLICHVDNIFPPVINITWL+NGH+VTEG SETSFL K+D+SFLKI YLTFL
Sbjct: 121 SPMMLGQPNTLICHVDNIFPPVINITWLRNGHAVTEGVSETSFLPKSDYSFLKIGYLTFL 180
Query: 610 PSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETXXXXXXXXXXXXXXXXXXXXXX 789
PSDDD YDCKVEHWGLD+PLLKHWEPEIPAPMSELTET
Sbjct: 181 PSDDDVYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLTVGLVGIVVGTVLII 240
Query: 790 QGLRSGGPSRHQGSL 834
+GLRSGG SRHQG L
Sbjct: 241 RGLRSGGASRHQGPL 255
>ref|XP_002702914.1| PREDICTED: BOLA-DQA2 protein-like [Bos taurus].
Length = 254
Score = 367 bits (943), Expect = e-102
Identities = 180/255 (70%), Positives = 199/255 (78%)
Frame = +1
Query: 70 MVPGRVLMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGDEEFYV 249
MV R L+ GA ALT +MS CGGEDI ADHV SYG + QS+GPS YT EFDGD+ FYV
Sbjct: 1 MVLNRALILGAFALTTMMSPCGGEDIVADHVGSYGTVISQSHGPSDQYTQEFDGDKLFYV 60
Query: 250 DLGKKETVWQLPLFSKFRSFDPQGALRNIATAKHNLNILIKRSNNTAAVNQVPEVTVFPK 429
DL KKETVW+LP+FS+F SFDPQ LRNIA +KHNLNI+IK SN A+N+VPEVTVF K
Sbjct: 61 DLEKKETVWRLPMFSQFASFDPQAILRNIAISKHNLNIMIKYSNFIPAINEVPEVTVFSK 120
Query: 430 SPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFL 609
SP++LGQPNTLICH+DN FPPVINITWLKNGH+VTEG SETSFL K+DHSFLKI YLTFL
Sbjct: 121 SPMVLGQPNTLICHMDN-FPPVINITWLKNGHAVTEGVSETSFLPKDDHSFLKIGYLTFL 179
Query: 610 PSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETXXXXXXXXXXXXXXXXXXXXXX 789
PSDDD YDCKVEHW LD+PLLKHWEPE+PAPMSELTET
Sbjct: 180 PSDDDVYDCKVEHWSLDEPLLKHWEPEVPAPMSELTETVVCALRLTVGLVGIVVGTIFII 239
Query: 790 QGLRSGGPSRHQGSL 834
QGLRSGG SRHQG L
Sbjct: 240 QGLRSGGASRHQGPL 254
>ref|NP_001073045.1| major histocompatibility complex, class II, DQ alpha, type 3 [Bos
taurus].
Length = 254
Score = 358 bits (918), Expect = 7e-99
Identities = 175/255 (68%), Positives = 195/255 (76%)
Frame = +1
Query: 70 MVPGRVLMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGDEEFYV 249
MV R L+ GAL LT + S CGGEDI ADHV +YG + YQS+GPSG Y H+FDGDEEFYV
Sbjct: 1 MVLNRALILGALTLTTMTSLCGGEDIVADHVGTYGTDFYQSHGPSGQYIHQFDGDEEFYV 60
Query: 250 DLGKKETVWQLPLFSKFRSFDPQGALRNIATAKHNLNILIKRSNNTAAVNQVPEVTVFPK 429
DL K+E VW+LP+F K R F PQGALRNIA AKHNL++L K N T +N+VPEVTVF K
Sbjct: 61 DLEKEEAVWRLPMFDKLR-FHPQGALRNIAIAKHNLDVLTKLYNFTPVINEVPEVTVFSK 119
Query: 430 SPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFL 609
SPVML QPNTLICHVDNIFPPVINITWL+NGHSVTE SETSFL ++D+S+LKISYL F
Sbjct: 120 SPVMLSQPNTLICHVDNIFPPVINITWLRNGHSVTEHVSETSFLLRSDYSYLKISYLPFR 179
Query: 610 PSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETXXXXXXXXXXXXXXXXXXXXXX 789
PSDDD YDCKVEHWGLD+PLLKHWEPEIPAPMSELTET
Sbjct: 180 PSDDDVYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLTVGLVGIVVGTVLIT 239
Query: 790 QGLRSGGPSRHQGSL 834
+GLRS G SRHQG L
Sbjct: 240 RGLRSSGASRHQGPL 254
>ref|NP_001012699.1| major histocompatibility complex, class II, DQ alpha 2 [Bos
taurus].
Length = 268
Score = 344 bits (882), Expect = 1e-94
Identities = 161/204 (78%), Positives = 177/204 (86%)
Frame = +1
Query: 70 MVPGRVLMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGDEEFYV 249
MV R L+ GALALT +MS+ GGEDI ADHV SYG +YQS+GPSG YT EFDGDE FYV
Sbjct: 1 MVLNRALILGALALTTMMSSSGGEDIVADHVGSYGTEIYQSHGPSGQYTQEFDGDEMFYV 60
Query: 250 DLGKKETVWQLPLFSKFRSFDPQGALRNIATAKHNLNILIKRSNNTAAVNQVPEVTVFPK 429
DLGKKETVW+LP+FS+F FDPQ AL IATAKHNL++L KRSN T +N+VPEVTVF K
Sbjct: 61 DLGKKETVWRLPMFSQFAGFDPQAALSEIATAKHNLDVLTKRSNFTPVINEVPEVTVFSK 120
Query: 430 SPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFL 609
SPVMLGQPNTLICHVDNIFPPVINITWLKNGH+VTEG SETSFL K+DHSFLKI YLTFL
Sbjct: 121 SPVMLGQPNTLICHVDNIFPPVINITWLKNGHAVTEGVSETSFLPKDDHSFLKIGYLTFL 180
Query: 610 PSDDDFYDCKVEHWGLDKPLLKHW 681
PSD+D YDCKVEHWGLD+PLLKHW
Sbjct: 181 PSDNDIYDCKVEHWGLDEPLLKHW 204
>ref|NP_001012696.1| major histocompatibility complex, class II, DY alpha [Bos taurus].
Length = 253
Score = 312 bits (799), Expect = 4e-85
Identities = 146/214 (68%), Positives = 171/214 (79%)
Frame = +1
Query: 82 RVLMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGDEEFYVDLGK 261
+ L+ AL L +MS GGEDI ADHV +YG NVYQ+YG SG +T EFDGDE FYVDLGK
Sbjct: 3 KALILRALTLATMMSPYGGEDIVADHVGTYGTNVYQTYGASGQFTFEFDGDELFYVDLGK 62
Query: 262 KETVWQLPLFSKFRSFDPQGALRNIATAKHNLNILIKRSNNTAAVNQVPEVTVFPKSPVM 441
KETVW+LP FS F+ Q ALRNI +K NL+ILIK S+ T A +++PEV VFPKS V+
Sbjct: 63 KETVWRLPEFSNITKFEVQSALRNIVMSKRNLDILIKNSSFTPATSEIPEVAVFPKSSVV 122
Query: 442 LGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFLPSDD 621
LG PNTLIC VDNIFPPVINITW NGH V EG +ET+F K+DHSFLK SYLTFLP+++
Sbjct: 123 LGIPNTLICQVDNIFPPVINITWFYNGHFVAEGIAETTFYPKSDHSFLKFSYLTFLPTNE 182
Query: 622 DFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTET 723
DFYDC+VEHWGL++PL+KHWEPEIP P SELTET
Sbjct: 183 DFYDCRVEHWGLEEPLVKHWEPEIPTPTSELTET 216
>ref|NP_001192849.1| HLA class II histocompatibility antigen, DO alpha chain [Bos
taurus].
Length = 250
Score = 242 bits (618), Expect = 4e-64
Identities = 116/212 (54%), Positives = 146/212 (68%)
Frame = +1
Query: 88 LMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGDEEFYVDLGKKE 267
L+ G L ++S I ADH+ SYG YQSY +G +T++FDG++ F VDL K+E
Sbjct: 7 LVLGLHTLMTLLSLQEVGAIKADHMGSYGPAFYQSYDGAGQFTYDFDGEQLFSVDLKKRE 66
Query: 268 TVWQLPLFSKFRSFDPQGALRNIATAKHNLNILIKRSNNTAAVNQVPEVTVFPKSPVMLG 447
VW+LP F F FDPQ L +IA K +L L+KRSN T A N P V V PKS V LG
Sbjct: 67 AVWRLPEFGNFAYFDPQSGLVSIAMIKAHLEDLVKRSNGTRAPNVSPRVAVLPKSHVQLG 126
Query: 448 QPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFLPSDDDF 627
+PN LIC VD IFPPVINITWL+NGH VT+G +++SF ++ DH F K YLTF+P DDF
Sbjct: 127 EPNVLICIVDKIFPPVINITWLRNGHPVTQGVTQSSFYAQPDHLFRKFHYLTFVPLVDDF 186
Query: 628 YDCKVEHWGLDKPLLKHWEPEIPAPMSELTET 723
YDCKVEHWGLD+PL +HWEP++P + + T T
Sbjct: 187 YDCKVEHWGLDQPLFQHWEPQVPTALPDTTGT 218
>ref|XP_002697222.1| PREDICTED: MHC class II antigen-like [Bos taurus].
Length = 250
Score = 242 bits (618), Expect = 4e-64
Identities = 116/212 (54%), Positives = 146/212 (68%)
Frame = +1
Query: 88 LMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGDEEFYVDLGKKE 267
L+ G L ++S I ADH+ SYG YQSY +G +T++FDG++ F VDL K+E
Sbjct: 7 LVLGLHTLMTLLSLQEVGAIKADHMGSYGPAFYQSYDGAGQFTYDFDGEQLFSVDLKKRE 66
Query: 268 TVWQLPLFSKFRSFDPQGALRNIATAKHNLNILIKRSNNTAAVNQVPEVTVFPKSPVMLG 447
VW+LP F F FDPQ L +IA K +L L+KRSN T A N P V V PKS V LG
Sbjct: 67 AVWRLPEFGNFAYFDPQSGLVSIAMIKAHLEDLVKRSNGTRAPNVSPRVAVLPKSHVQLG 126
Query: 448 QPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFLPSDDDF 627
+PN LIC VD IFPPVINITWL+NGH VT+G +++SF ++ DH F K YLTF+P DDF
Sbjct: 127 EPNVLICIVDKIFPPVINITWLRNGHPVTQGVTQSSFYAQPDHLFRKFHYLTFVPLVDDF 186
Query: 628 YDCKVEHWGLDKPLLKHWEPEIPAPMSELTET 723
YDCKVEHWGLD+PL +HWEP++P + + T T
Sbjct: 187 YDCKVEHWGLDQPLFQHWEPQVPTALPDTTGT 218
>ref|XP_002702869.1| PREDICTED: MHC class II antigen-like [Bos taurus].
Length = 224
Score = 229 bits (585), Expect = 3e-60
Identities = 111/198 (56%), Positives = 137/198 (69%)
Frame = +1
Query: 88 LMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGDEEFYVDLGKKE 267
L+ G L ++S I ADH+ SYG YQSY +G +T++FDG++ F VDL K+E
Sbjct: 7 LVLGLHTLMTLLSLQEVGAIKADHMGSYGPAFYQSYDGAGQFTYDFDGEQLFSVDLKKRE 66
Query: 268 TVWQLPLFSKFRSFDPQGALRNIATAKHNLNILIKRSNNTAAVNQVPEVTVFPKSPVMLG 447
VW+LP F F FDPQ L +IA K +L L+KRSN T A N P V V PKS V LG
Sbjct: 67 AVWRLPEFGNFAYFDPQSGLVSIAMIKAHLEDLVKRSNGTRAPNVSPRVAVLPKSHVQLG 126
Query: 448 QPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFLPSDDDF 627
+PN LIC VD IFPPVINITWL+NGH VT+G +++SF ++ DH F K YLTF+P DDF
Sbjct: 127 EPNVLICIVDKIFPPVINITWLRNGHPVTQGVTQSSFYAQPDHLFRKFHYLTFVPLVDDF 186
Query: 628 YDCKVEHWGLDKPLLKHW 681
YDCKVEHWGLD+PL +HW
Sbjct: 187 YDCKVEHWGLDQPLFQHW 204
>ref|NP_001012695.1| major histocompatibility complex, class II, DR alpha [Bos taurus].
Length = 253
Score = 228 bits (581), Expect = 8e-60
Identities = 106/173 (61%), Positives = 129/173 (74%)
Frame = +1
Query: 202 SGYYTHEFDGDEEFYVDLGKKETVWQLPLFSKFRSFDPQGALRNIATAKHNLNILIKRSN 381
S + +FDGDE F+VD+GKKETVW+LP F F SF+ QGAL N+A K NL+I+IKRSN
Sbjct: 43 SAEFMFDFDGDEIFHVDMGKKETVWRLPEFGHFASFEAQGALANMAVMKANLDIMIKRSN 102
Query: 382 NTAAVNQVPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFL 561
NT N PEVT+ P PV LG+PNTLIC +D PPVI++TWL+NG VT+G S+T FL
Sbjct: 103 NTPNTNVPPEVTLLPNKPVELGEPNTLICFIDKFSPPVISVTWLRNGKPVTDGVSQTVFL 162
Query: 562 SKNDHSFLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTE 720
+NDH F K YL FLP+ +D YDCKVEH GL++PLLKHWE E PAP+ E TE
Sbjct: 163 PRNDHLFRKFHYLPFLPTTEDVYDCKVEHLGLNEPLLKHWEYEAPAPLPETTE 215
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,487,055
Number of extensions: 1053867
Number of successful extensions: 3011
Number of sequences better than 1.0e-05: 52
Number of HSP's gapped: 2992
Number of HSP's successfully gapped: 52
Length of query: 399
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 295
Effective length of database: 14,240,222
Effective search space: 4200865490
Effective search space used: 4200865490
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA LNG01_0073_F10
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LNG01_0073_F10
(1199 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001011726.1| major histocompatibility complex, class II, ... 386 e-107
Alignment gi|XP_850803.1| PREDICTED: similar to HLA class II histocompati... 233 2e-61
Alignment gi|NP_001011723.1| MHC class II DR alpha chain [Canis lupus fam... 227 1e-59
Alignment gi|XP_532104.2| PREDICTED: similar to HLA class II histocompati... 100 5e-21
Alignment gi|NP_001014403.1| major histocompatibility complex, class II, ... 68 2e-11
Alignment gi|NP_001041564.1| major histocompatibility complex, class II, ... 68 2e-11
Alignment gi|NP_001014768.1| DLA class II histocompatibility antigen, DR-... 68 2e-11
Alignment gi|XP_535458.1| PREDICTED: similar to beta-2-microglobulin prec... 65 1e-10
Alignment gi|XP_850148.1| PREDICTED: similar to beta-2-microglobulin prec... 65 1e-10
Alignment gi|NP_001041592.1| major histocompatibility complex, class II, ... 60 3e-09
>ref|NP_001011726.1| major histocompatibility complex, class II, DQ alpha [Canis lupus
familiaris].
Length = 255
Score = 386 bits (991), Expect = e-107
Identities = 187/255 (73%), Positives = 203/255 (79%)
Frame = +1
Query: 70 MVPGRVLMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGDEEFYV 249
M+ RVL+ G L LT +MS GGE+I ADHVA+YG+NVYQSYGPSG YTHEFDGDEEFYV
Sbjct: 1 MILNRVLILGTLILTIMMSPSGGEEIVADHVANYGINVYQSYGPSGQYTHEFDGDEEFYV 60
Query: 250 DLGKKETVWQLPLFSKFRSFDPQGALRNIATAKHNLNILIKRSNNTAAVNQVPEVTVFPK 429
DL KKETVW+LP+FS FRSFDPQGALRN+A K NLNI+ KRSN TAA N+VPEVTVF K
Sbjct: 61 DLEKKETVWRLPVFSTFRSFDPQGALRNLAIIKQNLNIMTKRSNQTAATNEVPEVTVFSK 120
Query: 430 SPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFL 609
SPVMLGQPNTLIC VDNIFPPVIN+TWLKN HSVTEG SETSF +K DHSF KISYLTFL
Sbjct: 121 SPVMLGQPNTLICLVDNIFPPVINVTWLKNRHSVTEGVSETSFFAKGDHSFSKISYLTFL 180
Query: 610 PSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETXXXXXXXXXXXXXXXXXXXXXX 789
PS +D YDCKVEHWGLD+PLLKHWEPE+P PMSELTET
Sbjct: 181 PSAEDIYDCKVEHWGLDEPLLKHWEPEVPTPMSELTETVVCALGLAVGLVGIVMGTVFII 240
Query: 790 QGLRSGGPSRHQGSL 834
QGLRSGG SRHQG L
Sbjct: 241 QGLRSGGTSRHQGPL 255
>ref|XP_850803.1| PREDICTED: similar to HLA class II histocompatibility antigen, DO
alpha chain precursor (MHC class II antigen DOA) (MHC DZ
alpha) (MHC DN-alpha) isoform 11 [Canis familiaris].
Length = 227
Score = 233 bits (595), Expect = 2e-61
Identities = 108/195 (55%), Positives = 138/195 (70%), Gaps = 7/195 (3%)
Frame = +1
Query: 160 VASYGLNVYQSYGPSGYYTHEFDGDEEFYVDLGKKETVWQLPLFSKFRSFDPQGALRNIA 339
+ SYG YQSYG SG + HEFDG++ F V+L K++ VW+LP F FDPQ L +IA
Sbjct: 1 MGSYGPAFYQSYGSSGQFAHEFDGEQLFSVELKKRQAVWRLPEFGNLAHFDPQNGLASIA 60
Query: 340 TAKHNLNILIKRSNNTAAVNQV-------PEVTVFPKSPVMLGQPNTLICHVDNIFPPVI 498
K +L++L++RSN T A+N P V V PK V LGQPN LIC VDNIFPPVI
Sbjct: 61 VIKAHLDVLVERSNRTRAINGTHLSSPLPPRVAVLPKFRVELGQPNVLICIVDNIFPPVI 120
Query: 499 NITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKH 678
NITWL+NG ++EG ++TSF S+ DH F K YLTF+PS +D YDCKVEHWGL++PLL+H
Sbjct: 121 NITWLRNGQIISEGVAQTSFYSQPDHLFRKFCYLTFVPSAEDMYDCKVEHWGLEEPLLRH 180
Query: 679 WEPEIPAPMSELTET 723
WEP++P P+ + ET
Sbjct: 181 WEPQVPIPVPDTIET 195
>ref|NP_001011723.1| MHC class II DR alpha chain [Canis lupus familiaris].
Length = 254
Score = 227 bits (579), Expect = 1e-59
Identities = 108/179 (60%), Positives = 129/179 (72%)
Frame = +1
Query: 184 YQSYGPSGYYTHEFDGDEEFYVDLGKKETVWQLPLFSKFRSFDPQGALRNIATAKHNLNI 363
Y + PSG + +FDGDE F+VD+ KKETVW+L F +F SF+ QGAL NIA K NL+
Sbjct: 38 YLTPDPSGEFMFDFDGDEIFHVDMEKKETVWRLEEFGRFASFEAQGALANIAVDKANLDT 97
Query: 364 LIKRSNNTAAVNQVPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGF 543
+IKRSN+T N PEVTV +PV LG+PN LIC +D PPVIN+TWL+NG+ VT G
Sbjct: 98 MIKRSNHTPNTNVPPEVTVLSNTPVELGEPNILICFIDKFSPPVINVTWLRNGNPVTTGV 157
Query: 544 SETSFLSKNDHSFLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTE 720
SET FL + DH F K YL FLPS +D YDCKVEHWGLD+PLLKHWE E P P+ E TE
Sbjct: 158 SETIFLPREDHLFRKFHYLPFLPSAEDVYDCKVEHWGLDEPLLKHWEFEPPTPLPETTE 216
>ref|XP_532104.2| PREDICTED: similar to HLA class II histocompatibility antigen, DO
alpha chain precursor (MHC class II antigen DOA) (MHC DZ
alpha) (MHC DN-alpha) isoform 10 [Canis familiaris].
Length = 142
Score = 99.8 bits (247), Expect = 5e-21
Identities = 50/108 (46%), Positives = 69/108 (63%)
Frame = +1
Query: 145 IAADHVASYGLNVYQSYGPSGYYTHEFDGDEEFYVDLGKKETVWQLPLFSKFRSFDPQGA 324
I ADH+ SYG YQSYG SG + HEFDG++ F V+L K++ VW+LP F FDPQ
Sbjct: 12 IEADHMGSYGPAFYQSYGSSGQFAHEFDGEQLFSVELKKRQAVWRLPEFGNLAHFDPQNG 71
Query: 325 LRNIATAKHNLNILIKRSNNTAAVNQVPEVTVFPKSPVMLGQPNTLIC 468
L +IA K +L++L++RSN T A+N+ P+V + + TLIC
Sbjct: 72 LASIAVIKAHLDVLVERSNRTRAINE-PQVPIPVPDTI-----ETLIC 113
>ref|NP_001014403.1| major histocompatibility complex, class II, DQ beta 1 [Canis lupus
familiaris].
Length = 269
Score = 68.2 bits (165), Expect = 2e-11
Identities = 31/103 (30%), Positives = 46/103 (44%)
Frame = +1
Query: 406 PEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFL 585
P VT+FP +L N L+C V + +P I + W +N T G T + D +F
Sbjct: 129 PTVTIFPSKTEVLNHHNLLVCSVTDFYPGQIKVRWFRNDQEQTAGVVSTPLIRNGDWTFQ 188
Query: 586 KISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSEL 714
+ L P D Y C VEH L P+ W + + S++
Sbjct: 189 ILVMLEMTPQRGDVYTCHVEHASLQSPITVQWRAQSESAQSKM 231
>ref|NP_001041564.1| major histocompatibility complex, class II, DM alpha [Canis lupus
familiaris].
Length = 170
Score = 67.8 bits (164), Expect = 2e-11
Identities = 36/105 (34%), Positives = 52/105 (49%)
Frame = +1
Query: 406 PEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFL 585
P V VF P+ G+PN L+C + N+FPP + + W + V EG T + + SF
Sbjct: 38 PMVDVFTLKPLEFGKPNMLVCFISNLFPPTLTVNWWHHLDPV-EGIGPTFVSAVDGFSFQ 96
Query: 586 KISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTE 720
SYL F P+ D + C V H + + +W P P S+L E
Sbjct: 97 AFSYLNFTPAPSDLFSCVVTHEIDNYTAIAYWVPHDALP-SDLLE 140
>ref|NP_001014768.1| DLA class II histocompatibility antigen, DR-1 beta chain precursor
[Canis lupus familiaris].
Length = 266
Score = 67.8 bits (164), Expect = 2e-11
Identities = 34/123 (27%), Positives = 55/123 (44%)
Frame = +1
Query: 346 KHNLNILIKRSNNTAAVNQVPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGH 525
+HN ++ + T P VTV+P L N L+C V+ +P I + WL+NG
Sbjct: 109 RHNYGVI---ESFTVQRRVEPTVTVYPTKTQTLQHHNLLVCSVNGFYPGHIEVRWLRNGQ 165
Query: 526 SVTEGFSETSFLSKNDHSFLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPM 705
G T + D +F + L +P + Y C+VEH L P+ W + +
Sbjct: 166 EEEAGVVSTGLIRNGDWTFQILVMLEIVPQSGEVYTCQVEHPSLTSPVTVEWRAQSDSAQ 225
Query: 706 SEL 714
S++
Sbjct: 226 SKM 228
>ref|XP_535458.1| PREDICTED: similar to beta-2-microglobulin precursor isoform 2
[Canis familiaris].
Length = 125
Score = 65.5 bits (158), Expect = 1e-10
Identities = 32/98 (32%), Positives = 52/98 (53%)
Frame = +1
Query: 391 AVNQVPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKN 570
AV P++ V+ + P G+PN L C+V PP I I LKNG + ++ SF
Sbjct: 27 AVQHPPKIQVYSRHPAENGKPNFLNCYVSGFHPPEIEIDLLKNGKEMKAEQTDLSF--SK 84
Query: 571 DHSFLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWE 684
D +F + + F P++ D + C+V+H L +P + W+
Sbjct: 85 DWTFYLLVHTEFTPNEQDEFSCRVKHVTLSEPQIVKWD 122
>ref|XP_850148.1| PREDICTED: similar to beta-2-microglobulin precursor isoform 3
[Canis familiaris].
Length = 125
Score = 65.5 bits (158), Expect = 1e-10
Identities = 32/98 (32%), Positives = 52/98 (53%)
Frame = +1
Query: 391 AVNQVPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKN 570
AV P++ V+ + P G+PN L C+V PP I I LKNG + ++ SF
Sbjct: 27 AVQHPPKIQVYSRHPAENGKPNFLNCYVSGFHPPEIEIDLLKNGKEMKAEQTDLSF--SK 84
Query: 571 DHSFLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWE 684
D +F + + F P++ D + C+V+H L +P + W+
Sbjct: 85 DWTFYLLVHTEFTPNEQDEFSCRVKHVTLSEPQIVKWD 122
>ref|NP_001041592.1| major histocompatibility complex, class II, DO beta [Canis lupus
familiaris].
Length = 270
Score = 60.5 bits (145), Expect = 3e-09
Identities = 30/95 (31%), Positives = 41/95 (43%)
Frame = +1
Query: 406 PEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFL 585
PEVTV+P+ + N L+C V +P I I W +NG G T + D +F
Sbjct: 123 PEVTVYPERTPSMQHHNLLLCSVTGFYPGDIKIKWFRNGQEERVGVMSTGLIRNGDWTFQ 182
Query: 586 KISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPE 690
+ L P D Y C V H L P+ W +
Sbjct: 183 TMVMLEMTPELGDVYTCLVNHPSLLSPVSVEWRAQ 217
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,193,069
Number of extensions: 1067298
Number of successful extensions: 3224
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 3210
Number of HSP's successfully gapped: 21
Length of query: 399
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 294
Effective length of database: 15,374,224
Effective search space: 4520021856
Effective search space used: 4520021856
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LNG01_0073_F10
(1199 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003119375.1| PREDICTED: HLA class II histocompatibility a... 394 e-109
Alignment gi|XP_003119374.1| PREDICTED: HLA class II histocompatibility a... 394 e-109
Alignment gi|XP_003120319.1| PREDICTED: HLA class II histocompatibility a... 385 e-107
Alignment gi|XP_003120317.1| PREDICTED: HLA class II histocompatibility a... 385 e-107
Alignment gi|NP_064440.1| HLA class II histocompatibility antigen, DQ alp... 383 e-106
Alignment gi|NP_002113.2| HLA class II histocompatibility antigen, DQ alp... 381 e-106
Alignment gi|XP_003119376.1| PREDICTED: HLA class II histocompatibility a... 379 e-105
Alignment gi|XP_003120318.1| PREDICTED: HLA class II histocompatibility a... 371 e-103
Alignment gi|XP_003119377.1| PREDICTED: HLA class II histocompatibility a... 355 4e-98
Alignment gi|XP_003120320.1| PREDICTED: HLA class II histocompatibility a... 345 4e-95
>ref|XP_003119375.1| PREDICTED: HLA class II histocompatibility antigen, DQ alpha 1
chain-like isoform 2 [Homo sapiens].
Length = 255
Score = 394 bits (1011), Expect = e-109
Identities = 191/255 (74%), Positives = 206/255 (80%)
Frame = +1
Query: 70 MVPGRVLMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGDEEFYV 249
M+ + LM GALALT VMS CGGEDI ADHVASYG+N+YQSYGPSG Y+HEFDGDEEFYV
Sbjct: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60
Query: 250 DLGKKETVWQLPLFSKFRSFDPQGALRNIATAKHNLNILIKRSNNTAAVNQVPEVTVFPK 429
DL +KETVWQLPLF +FR FDPQ AL NIA KHNLNI+IKRSN+TAA N+VPEVTVF K
Sbjct: 61 DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120
Query: 430 SPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFL 609
SPV LGQPNTLIC VDNIFPPV+NITWL NGHSVTEG SETSFLSK+DHSF KISYLTFL
Sbjct: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180
Query: 610 PSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETXXXXXXXXXXXXXXXXXXXXXX 789
PSDD+ YDCKVEHWGLD+PLLKHWEPEIP PMSELTET
Sbjct: 181 PSDDEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVGLVGIVVGTVLII 240
Query: 790 QGLRSGGPSRHQGSL 834
+GLRS G SRHQG L
Sbjct: 241 RGLRSVGASRHQGPL 255
>ref|XP_003119374.1| PREDICTED: HLA class II histocompatibility antigen, DQ alpha 1
chain-like isoform 1 [Homo sapiens].
Length = 255
Score = 394 bits (1011), Expect = e-109
Identities = 191/255 (74%), Positives = 206/255 (80%)
Frame = +1
Query: 70 MVPGRVLMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGDEEFYV 249
M+ + LM GALALT VMS CGGEDI ADHVASYG+N+YQSYGPSG Y+HEFDGDEEFYV
Sbjct: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60
Query: 250 DLGKKETVWQLPLFSKFRSFDPQGALRNIATAKHNLNILIKRSNNTAAVNQVPEVTVFPK 429
DL +KETVWQLPLF +FR FDPQ AL NIA KHNLNI+IKRSN+TAA N+VPEVTVF K
Sbjct: 61 DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120
Query: 430 SPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFL 609
SPV LGQPNTLIC VDNIFPPV+NITWL NGHSVTEG SETSFLSK+DHSF KISYLTFL
Sbjct: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180
Query: 610 PSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETXXXXXXXXXXXXXXXXXXXXXX 789
PSDD+ YDCKVEHWGLD+PLLKHWEPEIP PMSELTET
Sbjct: 181 PSDDEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVGLVGIVVGTVLII 240
Query: 790 QGLRSGGPSRHQGSL 834
+GLRS G SRHQG L
Sbjct: 241 RGLRSVGASRHQGPL 255
>ref|XP_003120319.1| PREDICTED: HLA class II histocompatibility antigen, DQ alpha 1
chain-like isoform 3 [Homo sapiens].
Length = 254
Score = 385 bits (989), Expect = e-107
Identities = 190/255 (74%), Positives = 205/255 (80%)
Frame = +1
Query: 70 MVPGRVLMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGDEEFYV 249
M+ + LM GALALT VMS CGGEDI ADHVASYG+N+YQSYGPSG +THEFDGDEEFYV
Sbjct: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQFTHEFDGDEEFYV 60
Query: 250 DLGKKETVWQLPLFSKFRSFDPQGALRNIATAKHNLNILIKRSNNTAAVNQVPEVTVFPK 429
DL +KETVW+LPLF + R FDPQ AL NIA KHNLNILIKRSN+TAA N+VPEVTVF K
Sbjct: 61 DLERKETVWKLPLFHRLR-FDPQFALTNIAVLKHNLNILIKRSNSTAATNEVPEVTVFSK 119
Query: 430 SPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFL 609
SPV LGQPNTLIC VDNIFPPV+NITWL NGHSVTEG SETSFLSK+DHSF KISYLTFL
Sbjct: 120 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 179
Query: 610 PSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETXXXXXXXXXXXXXXXXXXXXXX 789
PS D+ YDCKVEHWGLD+PLLKHWEPEIPAPMSELTET
Sbjct: 180 PSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVLII 239
Query: 790 QGLRSGGPSRHQGSL 834
+GLRS G SRHQG L
Sbjct: 240 RGLRSVGASRHQGPL 254
>ref|XP_003120317.1| PREDICTED: HLA class II histocompatibility antigen, DQ alpha 1
chain-like isoform 1 [Homo sapiens].
Length = 254
Score = 385 bits (989), Expect = e-107
Identities = 190/255 (74%), Positives = 205/255 (80%)
Frame = +1
Query: 70 MVPGRVLMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGDEEFYV 249
M+ + LM GALALT VMS CGGEDI ADHVASYG+N+YQSYGPSG +THEFDGDEEFYV
Sbjct: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQFTHEFDGDEEFYV 60
Query: 250 DLGKKETVWQLPLFSKFRSFDPQGALRNIATAKHNLNILIKRSNNTAAVNQVPEVTVFPK 429
DL +KETVW+LPLF + R FDPQ AL NIA KHNLNILIKRSN+TAA N+VPEVTVF K
Sbjct: 61 DLERKETVWKLPLFHRLR-FDPQFALTNIAVLKHNLNILIKRSNSTAATNEVPEVTVFSK 119
Query: 430 SPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFL 609
SPV LGQPNTLIC VDNIFPPV+NITWL NGHSVTEG SETSFLSK+DHSF KISYLTFL
Sbjct: 120 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 179
Query: 610 PSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETXXXXXXXXXXXXXXXXXXXXXX 789
PS D+ YDCKVEHWGLD+PLLKHWEPEIPAPMSELTET
Sbjct: 180 PSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVLII 239
Query: 790 QGLRSGGPSRHQGSL 834
+GLRS G SRHQG L
Sbjct: 240 RGLRSVGASRHQGPL 254
>ref|NP_064440.1| HLA class II histocompatibility antigen, DQ alpha 2 chain precursor
[Homo sapiens].
Length = 255
Score = 383 bits (984), Expect = e-106
Identities = 186/255 (72%), Positives = 203/255 (79%)
Frame = +1
Query: 70 MVPGRVLMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGDEEFYV 249
M+ + L+ GALALTAVMS CGGEDI ADHVASYG+N YQS+GPSG YTHEFDGDEEFYV
Sbjct: 1 MILNKALLLGALALTAVMSPCGGEDIVADHVASYGVNFYQSHGPSGQYTHEFDGDEEFYV 60
Query: 250 DLGKKETVWQLPLFSKFRSFDPQGALRNIATAKHNLNILIKRSNNTAAVNQVPEVTVFPK 429
DL KETVWQLP+FSKF SFDPQ ALRN+A KH L ++++SN+TAA N+VPEVTVF K
Sbjct: 61 DLETKETVWQLPMFSKFISFDPQSALRNMAVGKHTLEFMMRQSNSTAATNEVPEVTVFSK 120
Query: 430 SPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFL 609
PV LGQPNTLIC VDNIFPPV+NITWL NGHSVTEG SETSFLSK+DHSF KISYLTFL
Sbjct: 121 FPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180
Query: 610 PSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETXXXXXXXXXXXXXXXXXXXXXX 789
PS D+ YDCKVEHWGLD+PLLKHWEPEIPAPMSELTET
Sbjct: 181 PSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETLVCALGLSVGLMGIVVGTVFII 240
Query: 790 QGLRSGGPSRHQGSL 834
QGLRS G SRHQG L
Sbjct: 241 QGLRSVGASRHQGLL 255
>ref|NP_002113.2| HLA class II histocompatibility antigen, DQ alpha 1 chain precursor
[Homo sapiens].
Length = 255
Score = 381 bits (979), Expect = e-106
Identities = 186/255 (72%), Positives = 202/255 (79%)
Frame = +1
Query: 70 MVPGRVLMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGDEEFYV 249
M+ + L+ GALALT VMS CGGEDI ADHVAS G+N+YQ YGPSG YTHEFDGDE+FYV
Sbjct: 1 MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQYTHEFDGDEQFYV 60
Query: 250 DLGKKETVWQLPLFSKFRSFDPQGALRNIATAKHNLNILIKRSNNTAAVNQVPEVTVFPK 429
DL +KET W+ P FSKF FDPQGALRN+A AKHNLNI+IKR N+TAA N+VPEVTVF K
Sbjct: 61 DLERKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSK 120
Query: 430 SPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFL 609
SPV LGQPNTLIC VDNIFPPV+NITWL NG SVTEG SETSFLSK+DHSF KISYLTFL
Sbjct: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFL 180
Query: 610 PSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETXXXXXXXXXXXXXXXXXXXXXX 789
PS D+ YDCKVEHWGLD+PLLKHWEPEIPAPMSELTET
Sbjct: 181 PSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLMGIVVGTVFII 240
Query: 790 QGLRSGGPSRHQGSL 834
QGLRS G SRHQG L
Sbjct: 241 QGLRSVGASRHQGPL 255
>ref|XP_003119376.1| PREDICTED: HLA class II histocompatibility antigen, DQ alpha 1
chain-like isoform 3 [Homo sapiens].
Length = 250
Score = 379 bits (974), Expect = e-105
Identities = 187/255 (73%), Positives = 202/255 (79%)
Frame = +1
Query: 70 MVPGRVLMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGDEEFYV 249
M+ + LM GALALT VMS CG ADHVASYG+N+YQSYGPSG Y+HEFDGDEEFYV
Sbjct: 1 MILNKALMLGALALTTVMSPCG-----ADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 55
Query: 250 DLGKKETVWQLPLFSKFRSFDPQGALRNIATAKHNLNILIKRSNNTAAVNQVPEVTVFPK 429
DL +KETVWQLPLF +FR FDPQ AL NIA KHNLNI+IKRSN+TAA N+VPEVTVF K
Sbjct: 56 DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 115
Query: 430 SPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFL 609
SPV LGQPNTLIC VDNIFPPV+NITWL NGHSVTEG SETSFLSK+DHSF KISYLTFL
Sbjct: 116 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 175
Query: 610 PSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETXXXXXXXXXXXXXXXXXXXXXX 789
PSDD+ YDCKVEHWGLD+PLLKHWEPEIP PMSELTET
Sbjct: 176 PSDDEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVGLVGIVVGTVLII 235
Query: 790 QGLRSGGPSRHQGSL 834
+GLRS G SRHQG L
Sbjct: 236 RGLRSVGASRHQGPL 250
>ref|XP_003120318.1| PREDICTED: HLA class II histocompatibility antigen, DQ alpha 1
chain-like isoform 2 [Homo sapiens].
Length = 249
Score = 371 bits (952), Expect = e-103
Identities = 186/255 (72%), Positives = 201/255 (78%)
Frame = +1
Query: 70 MVPGRVLMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGDEEFYV 249
M+ + LM GALALT VMS CG ADHVASYG+N+YQSYGPSG +THEFDGDEEFYV
Sbjct: 1 MILNKALMLGALALTTVMSPCG-----ADHVASYGVNLYQSYGPSGQFTHEFDGDEEFYV 55
Query: 250 DLGKKETVWQLPLFSKFRSFDPQGALRNIATAKHNLNILIKRSNNTAAVNQVPEVTVFPK 429
DL +KETVW+LPLF + R FDPQ AL NIA KHNLNILIKRSN+TAA N+VPEVTVF K
Sbjct: 56 DLERKETVWKLPLFHRLR-FDPQFALTNIAVLKHNLNILIKRSNSTAATNEVPEVTVFSK 114
Query: 430 SPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFL 609
SPV LGQPNTLIC VDNIFPPV+NITWL NGHSVTEG SETSFLSK+DHSF KISYLTFL
Sbjct: 115 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 174
Query: 610 PSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETXXXXXXXXXXXXXXXXXXXXXX 789
PS D+ YDCKVEHWGLD+PLLKHWEPEIPAPMSELTET
Sbjct: 175 PSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVLII 234
Query: 790 QGLRSGGPSRHQGSL 834
+GLRS G SRHQG L
Sbjct: 235 RGLRSVGASRHQGPL 249
>ref|XP_003119377.1| PREDICTED: HLA class II histocompatibility antigen, DQ alpha 1
chain-like isoform 4 [Homo sapiens].
Length = 208
Score = 355 bits (912), Expect = 4e-98
Identities = 167/204 (81%), Positives = 181/204 (88%)
Frame = +1
Query: 70 MVPGRVLMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGDEEFYV 249
M+ + LM GALALT VMS CGGEDI ADHVASYG+N+YQSYGPSG Y+HEFDGDEEFYV
Sbjct: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60
Query: 250 DLGKKETVWQLPLFSKFRSFDPQGALRNIATAKHNLNILIKRSNNTAAVNQVPEVTVFPK 429
DL +KETVWQLPLF +FR FDPQ AL NIA KHNLNI+IKRSN+TAA N+VPEVTVF K
Sbjct: 61 DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120
Query: 430 SPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFL 609
SPV LGQPNTLIC VDNIFPPV+NITWL NGHSVTEG SETSFLSK+DHSF KISYLTFL
Sbjct: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180
Query: 610 PSDDDFYDCKVEHWGLDKPLLKHW 681
PSDD+ YDCKVEHWGLD+PLLKHW
Sbjct: 181 PSDDEIYDCKVEHWGLDEPLLKHW 204
>ref|XP_003120320.1| PREDICTED: HLA class II histocompatibility antigen, DQ alpha 1
chain-like isoform 4 [Homo sapiens].
Length = 207
Score = 345 bits (886), Expect = 4e-95
Identities = 165/204 (80%), Positives = 179/204 (87%)
Frame = +1
Query: 70 MVPGRVLMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGDEEFYV 249
M+ + LM GALALT VMS CGGEDI ADHVASYG+N+YQSYGPSG +THEFDGDEEFYV
Sbjct: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQFTHEFDGDEEFYV 60
Query: 250 DLGKKETVWQLPLFSKFRSFDPQGALRNIATAKHNLNILIKRSNNTAAVNQVPEVTVFPK 429
DL +KETVW+LPLF + R FDPQ AL NIA KHNLNILIKRSN+TAA N+VPEVTVF K
Sbjct: 61 DLERKETVWKLPLFHRLR-FDPQFALTNIAVLKHNLNILIKRSNSTAATNEVPEVTVFSK 119
Query: 430 SPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFL 609
SPV LGQPNTLIC VDNIFPPV+NITWL NGHSVTEG SETSFLSK+DHSF KISYLTFL
Sbjct: 120 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 179
Query: 610 PSDDDFYDCKVEHWGLDKPLLKHW 681
PS D+ YDCKVEHWGLD+PLLKHW
Sbjct: 180 PSADEIYDCKVEHWGLDEPLLKHW 203
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,454,053
Number of extensions: 1055448
Number of successful extensions: 3003
Number of sequences better than 1.0e-05: 52
Number of HSP's gapped: 2979
Number of HSP's successfully gapped: 52
Length of query: 399
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 294
Effective length of database: 14,835,944
Effective search space: 4361767536
Effective search space used: 4361767536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LNG01_0073_F10
(1199 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034508.2| histocompatibility 2, class II antigen A, alpha... 340 1e-93
Alignment gi|NP_032232.2| histocompatibility 2, O region alpha locus [Mus... 232 4e-61
Alignment gi|NP_034511.2| histocompatibility 2, class II antigen E alpha ... 217 1e-56
Alignment gi|NP_034516.3| class II histocompatibility antigen, M alpha ch... 79 7e-15
Alignment gi|NP_034519.2| histocompatibility 2, O region beta locus [Mus ... 71 2e-12
Alignment gi|NP_033865.2| beta-2-microglobulin precursor [Mus musculus]. 67 2e-11
Alignment gi|NP_034512.2| H-2 class II histocompatibility antigen, I-E be... 64 2e-10
Alignment gi|NP_034517.2| class II histocompatibility antigen, M beta 1 c... 64 3e-10
Alignment gi|NP_001029150.1| histocompatibility 2, class II antigen E bet... 64 3e-10
Alignment gi|NP_034518.1| histocompatibility 2, class II, locus Mb2 [Mus ... 64 3e-10
>ref|NP_034508.2| histocompatibility 2, class II antigen A, alpha precursor [Mus
musculus].
Length = 256
Score = 340 bits (872), Expect = 1e-93
Identities = 166/256 (64%), Positives = 187/256 (73%), Gaps = 1/256 (0%)
Frame = +1
Query: 70 MVPGRVLMWGALALTAVMSACGGED-IAADHVASYGLNVYQSYGPSGYYTHEFDGDEEFY 246
M R L+ G LALT ++S CGGED I ADHV +YG++VYQS G G YT EFDGDE FY
Sbjct: 1 MPRSRALILGVLALTTMLSLCGGEDDIEADHVGTYGISVYQSPGDIGQYTFEFDGDELFY 60
Query: 247 VDLGKKETVWQLPLFSKFRSFDPQGALRNIATAKHNLNILIKRSNNTAAVNQVPEVTVFP 426
VDL KKETVW LP F + SFDPQG L+NIA KHNL +L KRSN+T A N+ P+ TVFP
Sbjct: 61 VDLDKKETVWMLPEFGQLASFDPQGGLQNIAVVKHNLGVLTKRSNSTPATNEAPQATVFP 120
Query: 427 KSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTF 606
KSPV+LGQPNTLIC VDNIFPPVINITWL+N SV +G ETSF D+SF K+SYLTF
Sbjct: 121 KSPVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTF 180
Query: 607 LPSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETXXXXXXXXXXXXXXXXXXXXX 786
+PSDDD YDCKVEHWGL++P+LKHWEPEIPAPMSELTET
Sbjct: 181 IPSDDDIYDCKVEHWGLEEPVLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTIFI 240
Query: 787 XQGLRSGGPSRHQGSL 834
QGLRSGG SRH G L
Sbjct: 241 IQGLRSGGTSRHPGPL 256
>ref|NP_032232.2| histocompatibility 2, O region alpha locus [Mus musculus].
Length = 250
Score = 232 bits (592), Expect = 4e-61
Identities = 111/207 (53%), Positives = 143/207 (69%)
Frame = +1
Query: 103 LALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGDEEFYVDLGKKETVWQL 282
L + +S G I ADH+ SYG YQSY SG +THEFDG++ F VDL +E VW+L
Sbjct: 12 LTAMSFLSPRGVRAIKADHMGSYGPAFYQSYDASGQFTHEFDGEQIFSVDLKNEEVVWRL 71
Query: 283 PLFSKFRSFDPQGALRNIATAKHNLNILIKRSNNTAAVNQVPEVTVFPKSPVMLGQPNTL 462
P F F D Q L +I+ K +L+IL++RSN T AV+ P VTV PK+ V LG+PN L
Sbjct: 72 PEFGDFAHSDFQSGLMSISMIKAHLDILVERSNRTRAVSVPPRVTVLPKTRVELGKPNVL 131
Query: 463 ICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFLPSDDDFYDCKV 642
IC VD+IFPPVIN+TWL+N +T+G ++TSF S+ +H F K YLTF+PS +D YDCKV
Sbjct: 132 ICIVDDIFPPVINVTWLRNSQPITKGVAQTSFYSQPNHRFRKFHYLTFVPSAEDVYDCKV 191
Query: 643 EHWGLDKPLLKHWEPEIPAPMSELTET 723
EHWGLD PLL+HWEP++ P + ET
Sbjct: 192 EHWGLDTPLLQHWEPQVLTPPPDTIET 218
>ref|NP_034511.2| histocompatibility 2, class II antigen E alpha precursor [Mus
musculus].
Length = 255
Score = 217 bits (553), Expect = 1e-56
Identities = 100/172 (58%), Positives = 125/172 (72%)
Frame = +1
Query: 205 GYYTHEFDGDEEFYVDLGKKETVWQLPLFSKFRSFDPQGALRNIATAKHNLNILIKRSNN 384
G + +FDGDE F+VD+ K ET+W+L F+KF SF+ QGAL NIA K NL+++ +RSNN
Sbjct: 45 GEFMFDFDGDEIFHVDIEKSETIWRLEEFAKFASFEAQGALANIAVDKANLDVMKERSNN 104
Query: 385 TAAVNQVPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLS 564
T N PEVTV +SPV LG+PN LIC +D PPV+N+TW +NG VTEG SET FL
Sbjct: 105 TPDANVAPEVTVLSRSPVNLGEPNILICFIDKFSPPVVNVTWFRNGRPVTEGVSETVFLP 164
Query: 565 KNDHSFLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTE 720
++DH F K YLTFLPS DDFYDC+V+HWGL++PL KHWE E + E TE
Sbjct: 165 RDDHLFRKFHYLTFLPSTDDFYDCEVDHWGLEEPLRKHWEFEEKTLLPETTE 216
>ref|NP_034516.3| class II histocompatibility antigen, M alpha chain precursor [Mus
musculus].
Length = 261
Score = 79.0 bits (193), Expect = 7e-15
Identities = 54/171 (31%), Positives = 78/171 (45%), Gaps = 5/171 (2%)
Frame = +1
Query: 223 FDGDEEFYVDLGKKETVWQLPLFSKFRSFDPQGALRNIATAKHNLNILI-----KRSNNT 387
+D DE F D + V +LP F+++ QG IA K +L+ K
Sbjct: 63 YDEDELFSFDFSQNTRVPRLPDFAEWAQ--GQGDASAIAFDKSFCEMLMREVSPKLEGQI 120
Query: 388 AAVNQVPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSK 567
+P VF P+ G+PNTL+C + N+FPP + + W + V EG S TS +
Sbjct: 121 PVSRGLPVAEVFTLKPLEFGKPNTLVCFISNLFPPTLTVNWQLHSAPV-EGASPTSISAV 179
Query: 568 NDHSFLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTE 720
+ +F SYL F P D Y C V H + +W P+ P S+L E
Sbjct: 180 DGLTFQAFSYLNFTPEPFDLYSCTVTHEIDRYTAIAYWVPQNALP-SDLLE 229
>ref|NP_034519.2| histocompatibility 2, O region beta locus [Mus musculus].
Length = 271
Score = 70.9 bits (172), Expect = 2e-12
Identities = 35/99 (35%), Positives = 48/99 (48%)
Frame = +1
Query: 385 TAAVNQVPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLS 564
T N PEVTV+P+ +L Q N L+C V +P I++ W +NG G T +
Sbjct: 116 TVERNVPPEVTVYPERTPLLQQHNLLLCSVTGFYPGDISVKWFRNGQEERSGVMSTGLVR 175
Query: 565 KNDHSFLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHW 681
D +F L +P D Y C VEH GL +P+ W
Sbjct: 176 NGDWTFQTTVMLEMIPELGDIYSCLVEHPGLLRPVSVAW 214
>ref|NP_033865.2| beta-2-microglobulin precursor [Mus musculus].
Length = 119
Score = 67.4 bits (163), Expect = 2e-11
Identities = 33/102 (32%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Frame = +1
Query: 391 AVNQVPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTE-GFSETSFLSK 567
A+ + P++ V+ + P G+PN L C+V PP I I LKNG + + S+ SF
Sbjct: 20 AIQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSF--S 77
Query: 568 NDHSFLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEI 693
D SF +++ F P++ D Y C+V+H + +P +W+ ++
Sbjct: 78 KDWSFYILAHTEFTPTETDTYACRVKHASMAEPKTVYWDRDM 119
>ref|NP_034512.2| H-2 class II histocompatibility antigen, I-E beta chain precursor
[Mus musculus].
Length = 264
Score = 63.9 bits (154), Expect = 2e-10
Identities = 29/103 (28%), Positives = 48/103 (46%)
Frame = +1
Query: 406 PEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFL 585
P VTV+P L N L+C V + +P I + W +NG G T + D +F
Sbjct: 124 PTVTVYPTKTQPLEHHNLLVCSVSDFYPGNIEVRWFRNGKEEKTGIVSTGLVRNGDWTFQ 183
Query: 586 KISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSEL 714
+ L +P + Y C+VEH L P+ W+ + + +++
Sbjct: 184 TLVMLETVPQSGEVYTCQVEHPSLTDPVTVEWKAQSTSAQNKM 226
>ref|NP_034517.2| class II histocompatibility antigen, M beta 1 chain precursor [Mus
musculus].
Length = 261
Score = 63.5 bits (153), Expect = 3e-10
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Frame = +1
Query: 400 QVPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKN-DH 576
+ P V V +P +P L C+V +P + ITW+KNG V ++ N D
Sbjct: 113 RAPSVRVAQTTPFNTREPVMLACYVWGFYPADVTITWMKNGQLVPSHSNKEKTAQPNGDW 172
Query: 577 SFLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEP 687
++ +SYL PS D Y C V+H G +P+ W P
Sbjct: 173 TYQTVSYLALTPSYGDVYTCVVQHSGTSEPIRGDWTP 209
>ref|NP_001029150.1| histocompatibility 2, class II antigen E beta2 [Mus musculus].
Length = 287
Score = 63.5 bits (153), Expect = 3e-10
Identities = 29/103 (28%), Positives = 47/103 (45%)
Frame = +1
Query: 406 PEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFL 585
P+VTV+P L N L+C V + +P I + W +NG G T + D ++
Sbjct: 125 PKVTVYPAKTQPLEHHNLLVCSVIDFYPGSIEVRWFRNGEEEKTGVVSTGLIQNRDWTYQ 184
Query: 586 KISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSEL 714
+ L +P + Y C+VEH L P+ W + ++L
Sbjct: 185 TLVMLEMVPRGGEVYTCQVEHPSLTSPVTVEWRARSTSAQNKL 227
>ref|NP_034518.1| histocompatibility 2, class II, locus Mb2 [Mus musculus].
Length = 261
Score = 63.5 bits (153), Expect = 3e-10
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Frame = +1
Query: 400 QVPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKN-DH 576
+ P V V +P +P L C+V +P + ITW+KNG V ++ N D
Sbjct: 113 RAPSVRVAQTTPFNTREPVMLACYVWGFYPADVTITWMKNGQLVPSHSNKEKTAQPNGDW 172
Query: 577 SFLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEP 687
++ +SYL PS D Y C V+H G +P+ W P
Sbjct: 173 TYQTVSYLALTPSYGDVYTCVVQHSGTSEPIRGDWTP 209
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,093,442
Number of extensions: 888169
Number of successful extensions: 2686
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 2674
Number of HSP's successfully gapped: 23
Length of query: 399
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 295
Effective length of database: 12,493,815
Effective search space: 3685675425
Effective search space used: 3685675425
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LNG01_0073_F10
(1199 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001123696.1| SLA class II histocompatibility antigen, DQ ... 474 e-134
Alignment gi|NP_001107534.2| SLA class II histocompatibility antigen, DQ ... 446 e-125
Alignment gi|NP_001172072.1| src-like-adapter [Sus scrofa]. 262 3e-70
Alignment gi|NP_001107178.1| MHC class II DR-alpha [Sus scrofa]. 226 3e-59
Alignment gi|NP_001004039.1| SLA-DM alpha chain [Sus scrofa]. 76 4e-14
Alignment gi|NP_001107177.1| major histocompatibility complex, class II, ... 76 4e-14
Alignment gi|NP_999143.1| beta-2-microglobulin precursor [Sus scrofa]. 71 1e-12
Alignment gi|NP_001107166.1| SLA class II histocompatibility antigen, DQ ... 66 4e-11
Alignment gi|NP_001107536.2| MHC class II, DO beta [Sus scrofa]. 64 2e-10
Alignment gi|XP_003128397.1| PREDICTED: DLA class II histocompatibility a... 64 2e-10
>ref|NP_001123696.1| SLA class II histocompatibility antigen, DQ haplotype D alpha chain
precursor [Sus scrofa].
Length = 255
Score = 474 bits (1220), Expect = e-134
Identities = 231/255 (90%), Positives = 231/255 (90%)
Frame = +1
Query: 70 MVPGRVLMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGDEEFYV 249
MVPGRVLMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGDEEFYV
Sbjct: 1 MVPGRVLMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGDEEFYV 60
Query: 250 DLGKKETVWQLPLFSKFRSFDPQGALRNIATAKHNLNILIKRSNNTAAVNQVPEVTVFPK 429
DL KKETVWQLPLFSKF SFDPQGALRNIATAKHNLNILIKRSNNTAAVNQVPEVTVFPK
Sbjct: 61 DLEKKETVWQLPLFSKFTSFDPQGALRNIATAKHNLNILIKRSNNTAAVNQVPEVTVFPK 120
Query: 430 SPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFL 609
SPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFL
Sbjct: 121 SPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFL 180
Query: 610 PSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETXXXXXXXXXXXXXXXXXXXXXX 789
PSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTET
Sbjct: 181 PSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLIVGLVGIVVGTVFII 240
Query: 790 QGLRSGGPSRHQGSL 834
QGLRSGGPSRHQGSL
Sbjct: 241 QGLRSGGPSRHQGSL 255
>ref|NP_001107534.2| SLA class II histocompatibility antigen, DQ haplotype C alpha chain
precursor [Sus scrofa].
Length = 254
Score = 446 bits (1146), Expect = e-125
Identities = 218/255 (85%), Positives = 225/255 (88%)
Frame = +1
Query: 70 MVPGRVLMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGDEEFYV 249
MVPGRVLMWGALALT VMSACGGEDIAADHVASYGLNVYQSYGPSGY+THEFDGDEEFYV
Sbjct: 1 MVPGRVLMWGALALTTVMSACGGEDIAADHVASYGLNVYQSYGPSGYFTHEFDGDEEFYV 60
Query: 250 DLGKKETVWQLPLFSKFRSFDPQGALRNIATAKHNLNILIKRSNNTAAVNQVPEVTVFPK 429
DL KKETVW+LPLFS+F SFDPQGALRNIAT KHNLNI+ KRSNNTAAVNQVPEVTVF K
Sbjct: 61 DLEKKETVWRLPLFSEFTSFDPQGALRNIATLKHNLNIVTKRSNNTAAVNQVPEVTVFSK 120
Query: 430 SPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFL 609
SPV+LGQPNTLICHVD+IFPPVINITWLKNGHSV +GFSETSFLSKNDHSFLKISYLTFL
Sbjct: 121 SPVILGQPNTLICHVDSIFPPVINITWLKNGHSV-KGFSETSFLSKNDHSFLKISYLTFL 179
Query: 610 PSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETXXXXXXXXXXXXXXXXXXXXXX 789
PSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTET
Sbjct: 180 PSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLIVGLVGIVVGTVFII 239
Query: 790 QGLRSGGPSRHQGSL 834
QGL SGGPSRHQGSL
Sbjct: 240 QGLLSGGPSRHQGSL 254
>ref|NP_001172072.1| src-like-adapter [Sus scrofa].
Length = 250
Score = 262 bits (669), Expect = 3e-70
Identities = 124/212 (58%), Positives = 153/212 (72%)
Frame = +1
Query: 88 LMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGDEEFYVDLGKKE 267
L+ G L ++S I ADH+ SYG YQSY SG +T++FDG++ F VDL K+E
Sbjct: 7 LVLGLHILMTLLSPQKAGAIKADHMGSYGPAFYQSYDGSGQFTYDFDGEQLFSVDLKKRE 66
Query: 268 TVWQLPLFSKFRSFDPQGALRNIATAKHNLNILIKRSNNTAAVNQVPEVTVFPKSPVMLG 447
VW+LP FS F FDPQ LR IA + +L++L++RSN+T A N P VTV PKSPV LG
Sbjct: 67 AVWRLPEFSNFADFDPQNGLRGIALIRAHLDVLVERSNHTRATNVPPRVTVLPKSPVALG 126
Query: 448 QPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFLPSDDDF 627
QPN LIC VDNIFPPVINITWL NG +VTEG ++TSF ++ DHSF K YLTF+PS DF
Sbjct: 127 QPNVLICIVDNIFPPVINITWLHNGQTVTEGVTQTSFYAQPDHSFRKFHYLTFVPSAGDF 186
Query: 628 YDCKVEHWGLDKPLLKHWEPEIPAPMSELTET 723
YDCKVEHWGLD+PL HWEP++ P+ + TET
Sbjct: 187 YDCKVEHWGLDEPLFTHWEPQVTMPLPDTTET 218
>ref|NP_001107178.1| MHC class II DR-alpha [Sus scrofa].
Length = 252
Score = 226 bits (575), Expect = 3e-59
Identities = 112/217 (51%), Positives = 133/217 (61%)
Frame = +1
Query: 184 YQSYGPSGYYTHEFDGDEEFYVDLGKKETVWQLPLFSKFRSFDPQGALRNIATAKHNLNI 363
Y S SG + +FDGDE F+VD+ K+ETVW+L F F SF+ QGAL NIA K NL I
Sbjct: 36 YLSPDKSGEFMFDFDGDEIFHVDMEKRETVWRLEEFGHFASFEAQGALANIAVDKANLEI 95
Query: 364 LIKRSNNTAAVNQVPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGF 543
LIKRSNNT N PEVTV PV LG+PN LIC +D PPV+N+TWL+NG VT G
Sbjct: 96 LIKRSNNTPNTNVPPEVTVLSDKPVELGEPNILICFIDKFSPPVVNVTWLRNGSPVTRGV 155
Query: 544 SETSFLSKNDHSFLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTET 723
SET FL + DH F K YL F+PS +D YDC+VEHWGLDKPLLKHWE E P+ E TE
Sbjct: 156 SETVFLPREDHLFRKFHYLPFMPSTEDVYDCQVEHWGLDKPLLKHWEFEAQTPLPETTEN 215
Query: 724 XXXXXXXXXXXXXXXXXXXXXXQGLRSGGPSRHQGSL 834
+G+R G + +G L
Sbjct: 216 TVCALGLIVALVGIIVGTVLIIKGVRKGNATERRGPL 252
>ref|NP_001004039.1| SLA-DM alpha chain [Sus scrofa].
Length = 260
Score = 75.9 bits (185), Expect = 4e-14
Identities = 59/209 (28%), Positives = 90/209 (43%), Gaps = 11/209 (5%)
Frame = +1
Query: 127 ACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGDEEFYVDLGKKETVWQLPLFSKFRS 306
A G D +H Y + Q P + +DGD+ F + + V +LP F+ +
Sbjct: 32 APGWRDELQNHTFQYTMYC-QDGNPEVGLSEVYDGDQLFSFNFSQNIRVPRLPEFADWAH 90
Query: 307 --------FDPQGALRNIATAKHNL---NILIKRSNNTAAVNQVPEVTVFPKSPVMLGQP 453
F +G R + L I + R +P VF P+ G+P
Sbjct: 91 QIEDTPAIFFDKGFCREMIEKVGPLFEGKIPVSRG--------LPIAEVFTLKPLEFGKP 142
Query: 454 NTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFLPSDDDFYD 633
NTL+C V N+FPP + +TW ++ + EG T + +D SF SYL F P+ D +
Sbjct: 143 NTLVCFVSNLFPPALTVTW-EHHSAPVEGIGPTFVSATDDLSFQAFSYLNFTPTPSDLFS 201
Query: 634 CKVEHWGLDKPLLKHWEPEIPAPMSELTE 720
C V H + +W P+ P S+L E
Sbjct: 202 CVVTHELDGYVAISYWVPQNALP-SDLLE 229
>ref|NP_001107177.1| major histocompatibility complex, class II, DO alpha [Sus scrofa].
Length = 260
Score = 75.9 bits (185), Expect = 4e-14
Identities = 59/209 (28%), Positives = 90/209 (43%), Gaps = 11/209 (5%)
Frame = +1
Query: 127 ACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGDEEFYVDLGKKETVWQLPLFSKFRS 306
A G D +H Y + Q P + +DGD+ F + + V +LP F+ +
Sbjct: 32 APGWRDELQNHTFQYTMYC-QDGNPEVGLSEVYDGDQLFSFNFSQNIRVPRLPEFADWAH 90
Query: 307 --------FDPQGALRNIATAKHNL---NILIKRSNNTAAVNQVPEVTVFPKSPVMLGQP 453
F +G R + L I + R +P VF P+ G+P
Sbjct: 91 QIEDTPAIFFDKGFCREMIEKVGPLFEGKIPVSRG--------LPIAEVFTLKPLEFGKP 142
Query: 454 NTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFLPSDDDFYD 633
NTL+C V N+FPP + +TW ++ + EG T + +D SF SYL F P+ D +
Sbjct: 143 NTLVCFVSNLFPPALTVTW-EHHSAPVEGIGPTFVSATDDLSFQAFSYLNFTPTPSDLFS 201
Query: 634 CKVEHWGLDKPLLKHWEPEIPAPMSELTE 720
C V H + +W P+ P S+L E
Sbjct: 202 CVVTHELDGYVAISYWVPQNALP-SDLLE 229
>ref|NP_999143.1| beta-2-microglobulin precursor [Sus scrofa].
Length = 118
Score = 71.2 bits (173), Expect = 1e-12
Identities = 38/98 (38%), Positives = 53/98 (54%)
Frame = +1
Query: 391 AVNQVPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKN 570
AV + P+V V+ + P G+PN L C+V PP I I LKNG + S+ SF
Sbjct: 20 AVARPPKVQVYSRHPAENGKPNYLNCYVSGFHPPQIEIDLLKNGEKMNAEQSDLSF--SK 77
Query: 571 DHSFLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWE 684
D SF + + F P+ D Y C+V+H LDKP + W+
Sbjct: 78 DWSFYLLVHTEFTPNAVDQYSCRVKHVTLDKPKIVKWD 115
>ref|NP_001107166.1| SLA class II histocompatibility antigen, DQ haplotype C beta chain
precursor [Sus scrofa].
Length = 261
Score = 65.9 bits (159), Expect = 4e-11
Identities = 34/123 (27%), Positives = 51/123 (41%)
Frame = +1
Query: 346 KHNLNILIKRSNNTAAVNQVPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGH 525
KHN I T P VT+ P L N L+C V + +P + + W +NG
Sbjct: 112 KHNYQI---EEGTTLQRRVQPTVTISPSKAEALNHHNLLVCAVTDFYPSQVKVQWFRNGQ 168
Query: 526 SVTEGFSETSFLSKNDHSFLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPM 705
T G T + D ++ + L D Y C+VEH L P+L W + +
Sbjct: 169 EETAGVVSTPLIRNGDWTYQVLVMLEMNLQRGDVYTCRVEHSSLQNPILVEWRAQSESAQ 228
Query: 706 SEL 714
S++
Sbjct: 229 SKM 231
>ref|NP_001107536.2| MHC class II, DO beta [Sus scrofa].
Length = 277
Score = 63.9 bits (154), Expect = 2e-10
Identities = 33/103 (32%), Positives = 45/103 (43%)
Frame = +1
Query: 406 PEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFL 585
PEVTV P+ L N L+C V +P I I W +NG EG T + D +F
Sbjct: 136 PEVTVHPERTPSLQLRNLLLCSVTGFYPGAIEIRWFRNGQEQREGVLATGLIRNGDWTFQ 195
Query: 586 KISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSEL 714
+ L P D Y C V+H L P+ W + ++L
Sbjct: 196 TVVMLEMTPELGDVYTCLVDHPSLLSPVSVEWRAQSDCSWTKL 238
>ref|XP_003128397.1| PREDICTED: DLA class II histocompatibility antigen, DR-1 beta
chain-like [Sus scrofa].
Length = 321
Score = 63.5 bits (153), Expect = 2e-10
Identities = 28/95 (29%), Positives = 42/95 (44%)
Frame = +1
Query: 406 PEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFL 585
P VTV+P L N L+C V +P + + W +NG G T + D +F
Sbjct: 126 PTVTVYPAKTQPLQHHNLLVCSVTGFYPGHVEVRWFRNGQEEAAGVVSTGLIPNGDWTFQ 185
Query: 586 KISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPE 690
+ L +P + Y C+VEH L P+ W +
Sbjct: 186 TMVMLETVPQSGEVYSCRVEHPSLTSPVTVEWRAQ 220
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,886,009
Number of extensions: 705310
Number of successful extensions: 1859
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 1845
Number of HSP's successfully gapped: 27
Length of query: 399
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 298
Effective length of database: 8,829,335
Effective search space: 2631141830
Effective search space used: 2631141830
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LNG01_0073_F10
(1199 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 559 e-156
>Sscrofa_Chr07
|| Length = 134764511
Score = 559 bits (282), Expect = e-156
Identities = 282/282 (100%)
Strand = Plus / Plus
Query: 401 aggttcctgaggtgactgtgtttcccaagtctccagtgatgctgggtcagcccaacaccc 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29169480 aggttcctgaggtgactgtgtttcccaagtctccagtgatgctgggtcagcccaacaccc 29169539
Query: 461 tcatctgtcatgtggacaacatctttcctcctgtgatcaacatcacgtggttgaagaacg 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29169540 tcatctgtcatgtggacaacatctttcctcctgtgatcaacatcacgtggttgaagaacg 29169599
Query: 521 ggcactctgtcacagaaggtttttctgagaccagcttcctctccaaaaatgatcattcct 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29169600 ggcactctgtcacagaaggtttttctgagaccagcttcctctccaaaaatgatcattcct 29169659
Query: 581 tcctcaagatcagttatctcaccttcctcccttctgatgatgatttttatgactgcaaag 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29169660 tcctcaagatcagttatctcaccttcctcccttctgatgatgatttttatgactgcaaag 29169719
Query: 641 tggagcactggggcctggataagccacttctgaaacactggg 682
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29169720 tggagcactggggcctggataagccacttctgaaacactggg 29169761
Score = 496 bits (250), Expect = e-137
Identities = 250/250 (100%)
Strand = Plus / Plus
Query: 151 gccgaccatgttgcctcctatggcttaaatgtctaccagtcttacggtcccagcggctat 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29168779 gccgaccatgttgcctcctatggcttaaatgtctaccagtcttacggtcccagcggctat 29168838
Query: 211 tatacccatgaatttgatggcgacgaggaattctacgtggacctggggaagaaggagact 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29168839 tatacccatgaatttgatggcgacgaggaattctacgtggacctggggaagaaggagact 29168898
Query: 271 gtctggcagctgcctctgtttagcaaatttagaagttttgacccacagggtgcactgagg 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29168899 gtctggcagctgcctctgtttagcaaatttagaagttttgacccacagggtgcactgagg 29168958
Query: 331 aacatagctacggcaaaacataatttgaacatcctgattaaacgttccaacaacaccgcg 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29168959 aacatagctacggcaaaacataatttgaacatcctgattaaacgttccaacaacaccgcg 29169018
Query: 391 gctgtcaatc 400
||||||||||
Sbjct: 29169019 gctgtcaatc 29169028
Score = 353 bits (178), Expect = 1e-94
Identities = 178/178 (100%)
Strand = Plus / Plus
Query: 682 gaacctgagattccagcccccatgtcagagctgacagagacagtggtctgcgccctggga 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29170000 gaacctgagattccagcccccatgtcagagctgacagagacagtggtctgcgccctggga 29170059
Query: 742 ttgatcgtgggccttgtgggcatcgtggtgggcactgtcttcatcattcaaggcctacgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29170060 ttgatcgtgggccttgtgggcatcgtggtgggcactgtcttcatcattcaaggcctacgc 29170119
Query: 802 tcaggtggtccctctagacaccaagggtccttgtgagtcacactccagaagggaaggt 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29170120 tcaggtggtccctctagacaccaagggtccttgtgagtcacactccagaagggaaggt 29170177
Score = 339 bits (171), Expect = 2e-90
Identities = 187/195 (95%)
Strand = Plus / Plus
Query: 977 ggaacttaaggtgctgtgtcatctcagaattcatatgcccttggaatcctcttcctgacc 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29170461 ggaacttaaggtgctgtgtcatctcagaattcatatgcccttggaatcctcttcctgacc 29170520
Query: 1037 ttctaggnnnnnnnncttttctcagttgttacctgttatgggatctctgagatatcccac 1096
||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29170521 ttctaggttttttttcttttctcagttgttacctgttatgggatctctgagatatcccac 29170580
Query: 1097 tcggctacctgatccctcagtgaccctaaactaatatgtacatggaaacaataaatcact 1156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29170581 tcggctacctgatccctcagtgaccctaaactaatatgtacatggaaacaataaatcact 29170640
Query: 1157 tcatgaggtttttgt 1171
|||||||||||||||
Sbjct: 29170641 tcatgaggtttttgt 29170655
Score = 260 bits (131), Expect = 2e-66
Identities = 134/135 (99%)
Strand = Plus / Plus
Query: 17 atcattgctctacaactccgaagagcaacagctgagaccaccttgagaagagcatggtcc 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29164977 atcattgctctacaactccgaagagcaacagctgagaccaccttgagaagagcatggtcc 29165036
Query: 77 caggccgagttctgatgtggggggccctcgccctgaccgccgtgatgagcgcctgtggag 136
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 29165037 caggccgagttctgatgtggggggccctcgccctgaccgccttgatgagcgcctgtggag 29165096
Query: 137 gtgaagacattgcgg 151
|||||||||||||||
Sbjct: 29165097 gtgaagacattgcgg 29165111
Score = 165 bits (83), Expect = 7e-38
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 856 aggtgcactgcccgcctacaagagctgaagagtggatgtgctcaacgacctagaactatt 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29170340 aggtgcactgcccgcctacaagagctgaagagtggatgtgctcaacgacctagaactatt 29170399
Query: 916 ttctggccaaattcatcatatac 938
|||||||||||||||||||||||
Sbjct: 29170400 ttctggccaaattcatcatatac 29170422
Score = 63.9 bits (32), Expect = 2e-07
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 628 tatgactgcaaagtggagcactggggcctgga 659
||||||||||||||||||||||||||||||||
Sbjct: 29547115 tatgactgcaaagtggagcactggggcctgga 29547084
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,906,777
Number of extensions: 206
Number of successful extensions: 206
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 206
Number of HSP's successfully gapped: 8
Length of query: 1199
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1178
Effective length of database: 2,808,413,156
Effective search space: 3308310697768
Effective search space used: 3308310697768
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)