Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LNG01_0102_E06
(1407 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002702455.1| PREDICTED: cell surface glycoprotein CD200 r... 310 2e-84
Alignment gi|NP_001092844.1| cell surface glycoprotein CD200 receptor 1 p... 307 1e-83
Alignment gi|XP_002684796.1| PREDICTED: cell surface glycoprotein CD200 r... 294 1e-79
>ref|XP_002702455.1| PREDICTED: cell surface glycoprotein CD200 receptor 1-like, partial
[Bos taurus].
Length = 234
Score = 310 bits (795), Expect = 2e-84
Identities = 152/230 (66%), Positives = 172/230 (74%)
Frame = +3
Query: 294 SLPVLVDTTAELYCPPVLWTTVVVATWEIVLRDKAPCFRAYRADTNETTSGNCTDERIIW 473
SL VLVDT A L CPPVLW +V+V TWEIVLRDK PCF AYR DTN+TT GNCTD+RI W
Sbjct: 3 SLSVLVDTKAVLTCPPVLWPSVLVVTWEIVLRDKPPCFGAYRRDTNQTTRGNCTDKRITW 62
Query: 474 SSRLDQNPALQIGPVAITHDGYYRCQKVAPNGNFHRGYHLQVLVPPEVTLVQSENGTVVC 653
+SR D+NPALQ+ PVAITHDG Y CQ + +GNF+ YHLQVLVPPEVTLVQ+E GT VC
Sbjct: 63 ASRPDENPALQVDPVAITHDGNYTCQIITSDGNFYHEYHLQVLVPPEVTLVQTEKGTAVC 122
Query: 654 KAVAGKPAAQISWTPEGDCVTEQNPHGGNGTVTVWSMCYWKARHVPNVSCTVSHVTGNKS 833
KA AGKPAAQISWTPEGDCVTEQ+P+ G+GTVTV S C W RHV NVSC+VSH+ GNKS
Sbjct: 123 KAAAGKPAAQISWTPEGDCVTEQDPYWGDGTVTVQSTCRWGGRHVLNVSCSVSHLAGNKS 182
Query: 834 LFLELNQGAGILGFPASYLLIILYXXXXXXXXXXXXXXXXXXQRTGDRRA 983
L +EL++G LGFP S LLIIL QRT D R+
Sbjct: 183 LSIELDKGVRTLGFPGSDLLIILCVKFSLLSVILVFVGFIHFQRTNDCRS 232
>ref|NP_001092844.1| cell surface glycoprotein CD200 receptor 1 precursor [Bos taurus].
Length = 355
Score = 307 bits (787), Expect = 1e-83
Identities = 147/206 (71%), Positives = 166/206 (80%)
Frame = +3
Query: 249 DRKQSTVISPEEVNISLPVLVDTTAELYCPPVLWTTVVVATWEIVLRDKAPCFRAYRADT 428
+RKQSTV EV SL VLVDT A L CPPVLW +V+V TWEIVLRDK PCF AYR DT
Sbjct: 57 ERKQSTVTLYAEVKTSLSVLVDTKAVLTCPPVLWPSVLVVTWEIVLRDKPPCFGAYRRDT 116
Query: 429 NETTSGNCTDERIIWSSRLDQNPALQIGPVAITHDGYYRCQKVAPNGNFHRGYHLQVLVP 608
N+TT GNCTD+RI W+SR D+NPALQ+ PVAITHDG Y CQ V +GNFH YHLQVLVP
Sbjct: 117 NQTTRGNCTDKRITWASRPDENPALQVDPVAITHDGNYTCQIVTSDGNFHHEYHLQVLVP 176
Query: 609 PEVTLVQSENGTVVCKAVAGKPAAQISWTPEGDCVTEQNPHGGNGTVTVWSMCYWKARHV 788
PEVTL+Q+E GT VCKA AGKPAAQISWTPEGDC TEQ P+ G+GTVTV S C W +RHV
Sbjct: 177 PEVTLIQTEKGTAVCKAAAGKPAAQISWTPEGDCDTEQGPYWGDGTVTVQSTCRWGSRHV 236
Query: 789 PNVSCTVSHVTGNKSLFLELNQGAGI 866
NVSC+VSH+ GNKSL ++L+QGA I
Sbjct: 237 LNVSCSVSHLAGNKSLSIQLSQGAEI 262
>ref|XP_002684796.1| PREDICTED: cell surface glycoprotein CD200 receptor 1-like [Bos
taurus].
Length = 277
Score = 294 bits (752), Expect = 1e-79
Identities = 137/191 (71%), Positives = 157/191 (82%)
Frame = +3
Query: 285 VNISLPVLVDTTAELYCPPVLWTTVVVATWEIVLRDKAPCFRAYRADTNETTSGNCTDER 464
+ SL VLVDT A L CPPVLW +V+V TWEIVLRDK PCF AYR DTN+TT GNCTD+R
Sbjct: 53 IKTSLSVLVDTKAVLTCPPVLWPSVLVVTWEIVLRDKPPCFGAYRRDTNQTTRGNCTDKR 112
Query: 465 IIWSSRLDQNPALQIGPVAITHDGYYRCQKVAPNGNFHRGYHLQVLVPPEVTLVQSENGT 644
I W+SR D+NPALQ+ PVAITHDG Y CQ + +GNF+ YHLQVLVPPEVTLVQ+E GT
Sbjct: 113 ITWASRPDENPALQVDPVAITHDGNYTCQIITSDGNFYHEYHLQVLVPPEVTLVQTEKGT 172
Query: 645 VVCKAVAGKPAAQISWTPEGDCVTEQNPHGGNGTVTVWSMCYWKARHVPNVSCTVSHVTG 824
VCKA AGKPAAQISWTPEGDCVTEQ+P+ G+GTVTV S C W RHV NVSC+VSH+ G
Sbjct: 173 AVCKAAAGKPAAQISWTPEGDCVTEQDPYWGDGTVTVQSTCRWGGRHVLNVSCSVSHLAG 232
Query: 825 NKSLFLELNQG 857
NKSL +EL++G
Sbjct: 233 NKSLSIELDKG 243
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 52,889,574
Number of extensions: 1451021
Number of successful extensions: 4536
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4518
Number of HSP's successfully gapped: 3
Length of query: 469
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 363
Effective length of database: 14,174,046
Effective search space: 5145178698
Effective search space used: 5145178698
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LNG01_0102_E06
(1407 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_740750.1| cell surface glycoprotein CD200 receptor 1 isof... 249 6e-66
Alignment gi|NP_620161.1| cell surface glycoprotein CD200 receptor 1 isof... 249 6e-66
Alignment gi|NP_001186144.1| cell surface glycoprotein CD200 receptor 2 i... 244 2e-64
Alignment gi|NP_001008784.2| cell surface glycoprotein CD200 receptor 2 i... 244 2e-64
Alignment gi|NP_620386.1| cell surface glycoprotein CD200 receptor 1 isof... 142 1e-33
Alignment gi|NP_620385.1| cell surface glycoprotein CD200 receptor 1 isof... 142 1e-33
>ref|NP_740750.1| cell surface glycoprotein CD200 receptor 1 isoform d [Homo
sapiens].
Length = 325
Score = 249 bits (635), Expect = 6e-66
Identities = 119/189 (62%), Positives = 140/189 (74%)
Frame = +3
Query: 282 EVNISLPVLVDTTAELYCPPVLWTTVVVATWEIVLRDKAPCFRAYRADTNETTSGNCTDE 461
EVN S PV + T A L CPP+ +++ TWEI+LR + C +AY+ +TNET NCTDE
Sbjct: 44 EVNTSWPVKMATNAVLCCPPIALRNLIIITWEIILRGQPSCTKAYKKETNETKETNCTDE 103
Query: 462 RIIWSSRLDQNPALQIGPVAITHDGYYRCQKVAPNGNFHRGYHLQVLVPPEVTLVQSENG 641
RI W SR DQN LQI VAITHDGYYRC V P+GNFHRGYHLQVLV PEVTL Q+ N
Sbjct: 104 RITWVSRPDQNSDLQIRTVAITHDGYYRCIMVTPDGNFHRGYHLQVLVTPEVTLFQNRNR 163
Query: 642 TVVCKAVAGKPAAQISWTPEGDCVTEQNPHGGNGTVTVWSMCYWKARHVPNVSCTVSHVT 821
T VCKAVAGKPAA ISW PEGDC T+Q + NGTVTV S C+W+ +V V+C VSH+T
Sbjct: 164 TAVCKAVAGKPAAHISWIPEGDCATKQE-YWSNGTVTVKSTCHWEVHNVSTVTCHVSHLT 222
Query: 822 GNKSLFLEL 848
GNKSL++EL
Sbjct: 223 GNKSLYIEL 231
>ref|NP_620161.1| cell surface glycoprotein CD200 receptor 1 isoform a [Homo
sapiens].
Length = 348
Score = 249 bits (635), Expect = 6e-66
Identities = 119/189 (62%), Positives = 140/189 (74%)
Frame = +3
Query: 282 EVNISLPVLVDTTAELYCPPVLWTTVVVATWEIVLRDKAPCFRAYRADTNETTSGNCTDE 461
EVN S PV + T A L CPP+ +++ TWEI+LR + C +AY+ +TNET NCTDE
Sbjct: 67 EVNTSWPVKMATNAVLCCPPIALRNLIIITWEIILRGQPSCTKAYKKETNETKETNCTDE 126
Query: 462 RIIWSSRLDQNPALQIGPVAITHDGYYRCQKVAPNGNFHRGYHLQVLVPPEVTLVQSENG 641
RI W SR DQN LQI VAITHDGYYRC V P+GNFHRGYHLQVLV PEVTL Q+ N
Sbjct: 127 RITWVSRPDQNSDLQIRTVAITHDGYYRCIMVTPDGNFHRGYHLQVLVTPEVTLFQNRNR 186
Query: 642 TVVCKAVAGKPAAQISWTPEGDCVTEQNPHGGNGTVTVWSMCYWKARHVPNVSCTVSHVT 821
T VCKAVAGKPAA ISW PEGDC T+Q + NGTVTV S C+W+ +V V+C VSH+T
Sbjct: 187 TAVCKAVAGKPAAHISWIPEGDCATKQE-YWSNGTVTVKSTCHWEVHNVSTVTCHVSHLT 245
Query: 822 GNKSLFLEL 848
GNKSL++EL
Sbjct: 246 GNKSLYIEL 254
>ref|NP_001186144.1| cell surface glycoprotein CD200 receptor 2 isoform 2 [Homo
sapiens].
Length = 250
Score = 244 bits (622), Expect = 2e-64
Identities = 124/208 (59%), Positives = 143/208 (68%)
Frame = +3
Query: 282 EVNISLPVLVDTTAELYCPPVLWTTVVVATWEIVLRDKAPCFRAYRADTNETTSGNCTDE 461
E NIS PVL+D A L CPP+ +++ TWEI+LR + C +AY+ +TNET NCT E
Sbjct: 16 EGNISQPVLMDINAVLCCPPIALRNLIIITWEIILRGQPSCTKAYKKETNETKETNCTVE 75
Query: 462 RIIWSSRLDQNPALQIGPVAITHDGYYRCQKVAPNGNFHRGYHLQVLVPPEVTLVQSENG 641
RI W SR DQN LQI PV THDGYYR V P+GNFHRGYHLQVLV PEV L QS N
Sbjct: 76 RITWVSRPDQNSDLQIRPVDTTHDGYYRGIVVTPDGNFHRGYHLQVLVTPEVNLFQSRNI 135
Query: 642 TVVCKAVAGKPAAQISWTPEGDCVTEQNPHGGNGTVTVWSMCYWKARHVPNVSCTVSHVT 821
T VCKAV GKPAAQISW PEG + + + GNGTVTV S C W+ H V+C VSH+T
Sbjct: 136 TAVCKAVTGKPAAQISWIPEGSILATKQEYWGNGTVTVKSTCPWEG-HKSTVTCHVSHLT 194
Query: 822 GNKSLFLELNQGAGILGFPASYLLIILY 905
GNKSL ++LN G G PA LLIILY
Sbjct: 195 GNKSLSVKLNSGLRTSGSPALSLLIILY 222
>ref|NP_001008784.2| cell surface glycoprotein CD200 receptor 2 isoform 1 [Homo
sapiens].
Length = 271
Score = 244 bits (622), Expect = 2e-64
Identities = 124/208 (59%), Positives = 143/208 (68%)
Frame = +3
Query: 282 EVNISLPVLVDTTAELYCPPVLWTTVVVATWEIVLRDKAPCFRAYRADTNETTSGNCTDE 461
E NIS PVL+D A L CPP+ +++ TWEI+LR + C +AY+ +TNET NCT E
Sbjct: 37 EGNISQPVLMDINAVLCCPPIALRNLIIITWEIILRGQPSCTKAYKKETNETKETNCTVE 96
Query: 462 RIIWSSRLDQNPALQIGPVAITHDGYYRCQKVAPNGNFHRGYHLQVLVPPEVTLVQSENG 641
RI W SR DQN LQI PV THDGYYR V P+GNFHRGYHLQVLV PEV L QS N
Sbjct: 97 RITWVSRPDQNSDLQIRPVDTTHDGYYRGIVVTPDGNFHRGYHLQVLVTPEVNLFQSRNI 156
Query: 642 TVVCKAVAGKPAAQISWTPEGDCVTEQNPHGGNGTVTVWSMCYWKARHVPNVSCTVSHVT 821
T VCKAV GKPAAQISW PEG + + + GNGTVTV S C W+ H V+C VSH+T
Sbjct: 157 TAVCKAVTGKPAAQISWIPEGSILATKQEYWGNGTVTVKSTCPWEG-HKSTVTCHVSHLT 215
Query: 822 GNKSLFLELNQGAGILGFPASYLLIILY 905
GNKSL ++LN G G PA LLIILY
Sbjct: 216 GNKSLSVKLNSGLRTSGSPALSLLIILY 243
>ref|NP_620386.1| cell surface glycoprotein CD200 receptor 1 isoform c [Homo
sapiens].
Length = 165
Score = 142 bits (357), Expect = 1e-33
Identities = 66/107 (61%), Positives = 77/107 (71%)
Frame = +3
Query: 282 EVNISLPVLVDTTAELYCPPVLWTTVVVATWEIVLRDKAPCFRAYRADTNETTSGNCTDE 461
EVN S PV + T A L CPP+ +++ TWEI+LR + C +AY+ +TNET NCTDE
Sbjct: 44 EVNTSWPVKMATNAVLCCPPIALRNLIIITWEIILRGQPSCTKAYKKETNETKETNCTDE 103
Query: 462 RIIWSSRLDQNPALQIGPVAITHDGYYRCQKVAPNGNFHRGYHLQVL 602
RI W SR DQN LQI VAITHDGYYRC V P+GNFHRGYHLQVL
Sbjct: 104 RITWVSRPDQNSDLQIRTVAITHDGYYRCIMVTPDGNFHRGYHLQVL 150
>ref|NP_620385.1| cell surface glycoprotein CD200 receptor 1 isoform b [Homo
sapiens].
Length = 188
Score = 142 bits (357), Expect = 1e-33
Identities = 66/107 (61%), Positives = 77/107 (71%)
Frame = +3
Query: 282 EVNISLPVLVDTTAELYCPPVLWTTVVVATWEIVLRDKAPCFRAYRADTNETTSGNCTDE 461
EVN S PV + T A L CPP+ +++ TWEI+LR + C +AY+ +TNET NCTDE
Sbjct: 67 EVNTSWPVKMATNAVLCCPPIALRNLIIITWEIILRGQPSCTKAYKKETNETKETNCTDE 126
Query: 462 RIIWSSRLDQNPALQIGPVAITHDGYYRCQKVAPNGNFHRGYHLQVL 602
RI W SR DQN LQI VAITHDGYYRC V P+GNFHRGYHLQVL
Sbjct: 127 RITWVSRPDQNSDLQIRTVAITHDGYYRCIMVTPDGNFHRGYHLQVL 173
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 54,246,221
Number of extensions: 1462878
Number of successful extensions: 4673
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4657
Number of HSP's successfully gapped: 6
Length of query: 469
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 363
Effective length of database: 14,802,980
Effective search space: 5373481740
Effective search space used: 5373481740
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LNG01_0102_E06
(1407 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_545098.2| PREDICTED: similar to Cell surface glycoprotein... 258 1e-68
Alignment gi|XP_545099.2| PREDICTED: similar to CD200 receptor 1 isoform ... 248 1e-65
>ref|XP_545098.2| PREDICTED: similar to Cell surface glycoprotein OX2 receptor
precursor (CD200 cell surface glycoprotein receptor)
[Canis familiaris].
Length = 300
Score = 258 bits (658), Expect = 1e-68
Identities = 130/206 (63%), Positives = 149/206 (72%)
Frame = +3
Query: 288 NISLPVLVDTTAELYCPPVLWTTVVVATWEIVLRDKAPCFRAYRADTNETTSGNCTDERI 467
N SL V VDT A L+CP + V+V TW ++ RD C RAYR D+N+T CTDERI
Sbjct: 22 NTSLSVFVDTRAVLHCPNAT-SNVLVVTWSVIFRDNTSCIRAYRTDSNKTREKTCTDERI 80
Query: 468 IWSSRLDQNPALQIGPVAITHDGYYRCQKVAPNGNFHRGYHLQVLVPPEVTLVQSENGTV 647
W SR DQN AL+I PVAITH+GYY C+ + P+GNF G+HLQVLVPP+VTL ENGT
Sbjct: 81 SWDSRPDQNFALRINPVAITHEGYYTCEVITPDGNFCHGHHLQVLVPPKVTLSLGENGTT 140
Query: 648 VCKAVAGKPAAQISWTPEGDCVTEQNPHGGNGTVTVWSMCYWKARHVPNVSCTVSHVTGN 827
VC AVAGKPAAQISWTP GDC T + GN TVTV S C+W+ R V VSC VSHVTGN
Sbjct: 141 VCWAVAGKPAAQISWTPMGDCHTVEE-RLGNDTVTVQSTCHWEDRQVSEVSCFVSHVTGN 199
Query: 828 KSLFLELNQGAGILGFPASYLLIILY 905
KSL +ELNQGA L FPAS LL+ILY
Sbjct: 200 KSLSIELNQGAITLEFPASALLVILY 225
>ref|XP_545099.2| PREDICTED: similar to CD200 receptor 1 isoform a [Canis
familiaris].
Length = 325
Score = 248 bits (633), Expect = 1e-65
Identities = 122/203 (60%), Positives = 144/203 (70%)
Frame = +3
Query: 249 DRKQSTVISPEEVNISLPVLVDTTAELYCPPVLWTTVVVATWEIVLRDKAPCFRAYRADT 428
+RKQ ++ P E N SL V VDT A L+CP + V+V TW ++ RD C RAYR D+
Sbjct: 52 ERKQKSITPPVEANTSLSVFVDTRAVLHCPNAT-SNVLVVTWSVIFRDNTSCIRAYRTDS 110
Query: 429 NETTSGNCTDERIIWSSRLDQNPALQIGPVAITHDGYYRCQKVAPNGNFHRGYHLQVLVP 608
N+T CTDERI W SR DQN AL+I PVAITH+GYY+C+ V P+GNF G+HLQVLVP
Sbjct: 111 NKTREKTCTDERISWDSRPDQNFALRINPVAITHEGYYKCEVVTPDGNFCHGHHLQVLVP 170
Query: 609 PEVTLVQSENGTVVCKAVAGKPAAQISWTPEGDCVTEQNPHGGNGTVTVWSMCYWKARHV 788
P+VTL ENGT VC AVAGKPAAQISWTP GDC T + GN TVTV S C+W+ V
Sbjct: 171 PKVTLSLGENGTTVCWAVAGKPAAQISWTPTGDCHTVEE-QLGNDTVTVQSTCHWEDHQV 229
Query: 789 PNVSCTVSHVTGNKSLFLELNQG 857
VSC VSHVTGNKSL +E+N G
Sbjct: 230 SEVSCFVSHVTGNKSLSIEMNPG 252
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 55,084,162
Number of extensions: 1479605
Number of successful extensions: 4347
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4326
Number of HSP's successfully gapped: 2
Length of query: 469
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 363
Effective length of database: 15,340,888
Effective search space: 5568742344
Effective search space used: 5568742344
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LNG01_0102_E06
(1407 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_795984.1| cell surface glycoprotein CD200 receptor 5 [Mus... 199 6e-51
Alignment gi|NP_067300.1| cell surface glycoprotein CD200 receptor 1 prec... 191 2e-48
Alignment gi|NP_996258.1| cell surface glycoprotein CD200 receptor 2 [Mus... 189 5e-48
Alignment gi|NP_997127.1| cell surface glycoprotein CD200 receptor 4 [Mus... 184 2e-46
Alignment gi|NP_001121604.1| cell surface glycoprotein CD200 receptor 3 i... 114 1e-25
Alignment gi|NP_083294.2| cell surface glycoprotein CD200 receptor 3 isof... 114 1e-25
Alignment gi|NP_001121605.1| cell surface glycoprotein CD200 receptor 3 i... 54 2e-07
Alignment gi|NP_081854.1| cell surface glycoprotein CD200 receptor 3 isof... 54 2e-07
>ref|NP_795984.1| cell surface glycoprotein CD200 receptor 5 [Mus musculus].
Length = 270
Score = 199 bits (505), Expect = 6e-51
Identities = 107/208 (51%), Positives = 131/208 (62%)
Frame = +3
Query: 282 EVNISLPVLVDTTAELYCPPVLWTTVVVATWEIVLRDKAPCFRAYRADTNETTSGNCTDE 461
+VN ++ V + T A L C + T V+ TW I LRD C Y+ DT +T +C D
Sbjct: 42 QVNTTVSVQIGTKALLCCFSIPLTKAVLITWIIKLRDLPSCTILYKVDT-KTIETSCLDR 100
Query: 462 RIIWSSRLDQNPALQIGPVAITHDGYYRCQKVAPNGNFHRGYHLQVLVPPEVTLVQSENG 641
I W+S D +P LQI V + H+G Y + V P GNF R Y LQVLVPPEVT +N
Sbjct: 101 NITWASTPDHSPELQISAVTLQHEGTYTRETVTPEGNFGRVYDLQVLVPPEVTYFPGKNR 160
Query: 642 TVVCKAVAGKPAAQISWTPEGDCVTEQNPHGGNGTVTVWSMCYWKARHVPNVSCTVSHVT 821
T VC+A+AGKPAAQISWTP+GDCVT H NGTVTV S C+W+ +V VSC VSH T
Sbjct: 161 TAVCEAMAGKPAAQISWTPDGDCVTTSESH-SNGTVTVRSTCHWEQNNVSAVSCIVSHST 219
Query: 822 GNKSLFLELNQGAGILGFPASYLLIILY 905
GNKSLF+ELNQG+ + LL ILY
Sbjct: 220 GNKSLFIELNQGSTT---TTTSLLTILY 244
>ref|NP_067300.1| cell surface glycoprotein CD200 receptor 1 precursor [Mus
musculus].
Length = 326
Score = 191 bits (484), Expect = 2e-48
Identities = 95/192 (49%), Positives = 125/192 (65%)
Frame = +3
Query: 282 EVNISLPVLVDTTAELYCPPVLWTTVVVATWEIVLRDKAPCFRAYRADTNETTSGNCTDE 461
+VN ++ V + T A L C + T V+ TW I LR C AY+ DT +T +C
Sbjct: 42 QVNTTVSVQIGTKALLCCFSIPLTKAVLITWIIKLRGLPSCTIAYKVDT-KTNETSCLGR 100
Query: 462 RIIWSSRLDQNPALQIGPVAITHDGYYRCQKVAPNGNFHRGYHLQVLVPPEVTLVQSENG 641
I W+S D +P LQI V + H+G Y C+ V P GNF + Y LQVLVPPEVT +N
Sbjct: 101 NITWASTPDHSPELQISAVTLQHEGTYTCETVTPEGNFEKNYDLQVLVPPEVTYFPEKNR 160
Query: 642 TVVCKAVAGKPAAQISWTPEGDCVTEQNPHGGNGTVTVWSMCYWKARHVPNVSCTVSHVT 821
+ VC+A+AGKPAAQISW+P+GDCVT H NGTVTV S C+W+ +V +VSC VSH+T
Sbjct: 161 SAVCEAMAGKPAAQISWSPDGDCVTTSESH-SNGTVTVRSTCHWEQNNVSDVSCIVSHLT 219
Query: 822 GNKSLFLELNQG 857
GN+SL +EL++G
Sbjct: 220 GNQSLSIELSRG 231
>ref|NP_996258.1| cell surface glycoprotein CD200 receptor 2 [Mus musculus].
Length = 249
Score = 189 bits (480), Expect = 5e-48
Identities = 96/185 (51%), Positives = 118/185 (63%)
Frame = +3
Query: 303 VLVDTTAELYCPPVLWTTVVVATWEIVLRDKAPCFRAYRADTNETTSGNCTDERIIWSSR 482
V + T A L C + T V+ TW I R + C AY+ +T ET C I W+S
Sbjct: 28 VQMGTKARLCCRSIPLTKAVLITWIIKPRGQPSCIMAYKVETKETNE-TCLGRNITWAST 86
Query: 483 LDQNPALQIGPVAITHDGYYRCQKVAPNGNFHRGYHLQVLVPPEVTLVQSENGTVVCKAV 662
D P LQI VA+ H+G Y C+ P GNFH+ Y LQVLVPPEVT EN T VC+A+
Sbjct: 87 PDHIPDLQISAVALQHEGNYLCEITTPEGNFHKVYDLQVLVPPEVTYFLGENRTAVCEAM 146
Query: 663 AGKPAAQISWTPEGDCVTEQNPHGGNGTVTVWSMCYWKARHVPNVSCTVSHVTGNKSLFL 842
AGKPAAQISWTP+GDCVT+ H NGTVTV S C+W+ +V VSC VSH TGN+SL +
Sbjct: 147 AGKPAAQISWTPDGDCVTKSESH-SNGTVTVRSTCHWEQNNVSAVSCIVSHSTGNQSLSI 205
Query: 843 ELNQG 857
EL++G
Sbjct: 206 ELSRG 210
>ref|NP_997127.1| cell surface glycoprotein CD200 receptor 4 [Mus musculus].
Length = 270
Score = 184 bits (466), Expect = 2e-46
Identities = 105/210 (50%), Positives = 129/210 (61%), Gaps = 2/210 (0%)
Frame = +3
Query: 282 EVNISLPVLVDTTAELYCPPVLWTTVVVATWEIVLRDKAPCFRAYRAD--TNETTSGNCT 455
+VN ++ V +D A L C V+ TW I R C AY D TNET+ C
Sbjct: 42 QVNTTMSVQMDKKALLCCFSSPLINAVLITWIIKHRHLPSCTIAYNLDKKTNETS---CL 98
Query: 456 DERIIWSSRLDQNPALQIGPVAITHDGYYRCQKVAPNGNFHRGYHLQVLVPPEVTLVQSE 635
I W+S D +P LQI VA+ H+G Y C+ V P GN + Y LQVLVPPEVT +
Sbjct: 99 GRNITWASTPDHSPELQISAVALQHEGTYTCEIVTPEGNLEKVYDLQVLVPPEVTYFPGK 158
Query: 636 NGTVVCKAVAGKPAAQISWTPEGDCVTEQNPHGGNGTVTVWSMCYWKARHVPNVSCTVSH 815
N T VC+A+AGKPAAQISWTP+GDCVT+ H NGTVTV S C+W+ +V VSC VSH
Sbjct: 159 NRTAVCEAMAGKPAAQISWTPDGDCVTKSESH-SNGTVTVRSTCHWEQNNVSVVSCLVSH 217
Query: 816 VTGNKSLFLELNQGAGILGFPASYLLIILY 905
TGN+SL +EL+QG + P S LL ILY
Sbjct: 218 STGNQSLSIELSQGT--MTTPRS-LLTILY 244
>ref|NP_001121604.1| cell surface glycoprotein CD200 receptor 3 isoform 1 [Mus
musculus].
Length = 278
Score = 114 bits (286), Expect = 1e-25
Identities = 75/210 (35%), Positives = 106/210 (50%), Gaps = 2/210 (0%)
Frame = +3
Query: 282 EVNISLPVLVDT--TAELYCPPVLWTTVVVATWEIVLRDKAPCFRAYRADTNETTSGNCT 455
E+ I PV V A+L+C P + WEI RD C YRA+ + + CT
Sbjct: 56 EIEIITPVSVQIGIKAQLFCHPSPSKEATLRIWEITPRDWPSCRLPYRAELQQISKKICT 115
Query: 456 DERIIWSSRLDQNPALQIGPVAITHDGYYRCQKVAPNGNFHRGYHLQVLVPPEVTLVQSE 635
+ Q+ L I +A+ HDG+Y C+ +G F + +Q V E
Sbjct: 116 ERGTTRVPAHHQSSDLPIKSMALKHDGHYSCRIETTDGIFQERHSIQ---------VPGE 166
Query: 636 NGTVVCKAVAGKPAAQISWTPEGDCVTEQNPHGGNGTVTVWSMCYWKARHVPNVSCTVSH 815
N TVVC+A+A KPA QI WTP+ DCVT+ H N T+ V S C+ + + +V C +SH
Sbjct: 167 NRTVVCEAIASKPAMQILWTPDEDCVTKSKSH--NDTMIVRSKCHREKNNGHSVFCFISH 224
Query: 816 VTGNKSLFLELNQGAGILGFPASYLLIILY 905
+T N L +E N+G + P+ LL ILY
Sbjct: 225 LTDNWILSMEQNRGTTSI-LPS--LLSILY 251
>ref|NP_083294.2| cell surface glycoprotein CD200 receptor 3 isoform 3 [Mus
musculus].
Length = 275
Score = 114 bits (286), Expect = 1e-25
Identities = 75/210 (35%), Positives = 106/210 (50%), Gaps = 2/210 (0%)
Frame = +3
Query: 282 EVNISLPVLVDT--TAELYCPPVLWTTVVVATWEIVLRDKAPCFRAYRADTNETTSGNCT 455
E+ I PV V A+L+C P + WEI RD C YRA+ + + CT
Sbjct: 56 EIEIITPVSVQIGIKAQLFCHPSPSKEATLRIWEITPRDWPSCRLPYRAELQQISKKICT 115
Query: 456 DERIIWSSRLDQNPALQIGPVAITHDGYYRCQKVAPNGNFHRGYHLQVLVPPEVTLVQSE 635
+ Q+ L I +A+ HDG+Y C+ +G F + +Q V E
Sbjct: 116 ERGTTRVPAHHQSSDLPIKSMALKHDGHYSCRIETTDGIFQERHSIQ---------VPGE 166
Query: 636 NGTVVCKAVAGKPAAQISWTPEGDCVTEQNPHGGNGTVTVWSMCYWKARHVPNVSCTVSH 815
N TVVC+A+A KPA QI WTP+ DCVT+ H N T+ V S C+ + + +V C +SH
Sbjct: 167 NRTVVCEAIASKPAMQILWTPDEDCVTKSKSH--NDTMIVRSKCHREKNNGHSVFCFISH 224
Query: 816 VTGNKSLFLELNQGAGILGFPASYLLIILY 905
+T N L +E N+G + P+ LL ILY
Sbjct: 225 LTDNWILSMEQNRGTTSI-LPS--LLSILY 251
>ref|NP_001121605.1| cell surface glycoprotein CD200 receptor 3 isoform 2 [Mus
musculus].
Length = 205
Score = 54.3 bits (129), Expect = 2e-07
Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 2/108 (1%)
Frame = +3
Query: 282 EVNISLPVLVDT--TAELYCPPVLWTTVVVATWEIVLRDKAPCFRAYRADTNETTSGNCT 455
E+ I PV V A+L+C P + WEI RD C YRA+ + + CT
Sbjct: 56 EIEIITPVSVQIGIKAQLFCHPSPSKEATLRIWEITPRDWPSCRLPYRAELQQISKKICT 115
Query: 456 DERIIWSSRLDQNPALQIGPVAITHDGYYRCQKVAPNGNFHRGYHLQV 599
+ Q+ L I +A+ HDG+Y C+ +G F + +QV
Sbjct: 116 ERGTTRVPAHHQSSDLPIKSMALKHDGHYSCRIETTDGIFQERHSIQV 163
>ref|NP_081854.1| cell surface glycoprotein CD200 receptor 3 isoform 4 [Mus
musculus].
Length = 202
Score = 54.3 bits (129), Expect = 2e-07
Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 2/108 (1%)
Frame = +3
Query: 282 EVNISLPVLVDT--TAELYCPPVLWTTVVVATWEIVLRDKAPCFRAYRADTNETTSGNCT 455
E+ I PV V A+L+C P + WEI RD C YRA+ + + CT
Sbjct: 56 EIEIITPVSVQIGIKAQLFCHPSPSKEATLRIWEITPRDWPSCRLPYRAELQQISKKICT 115
Query: 456 DERIIWSSRLDQNPALQIGPVAITHDGYYRCQKVAPNGNFHRGYHLQV 599
+ Q+ L I +A+ HDG+Y C+ +G F + +QV
Sbjct: 116 ERGTTRVPAHHQSSDLPIKSMALKHDGHYSCRIETTDGIFQERHSIQV 163
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 46,270,686
Number of extensions: 1248344
Number of successful extensions: 3905
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 3870
Number of HSP's successfully gapped: 8
Length of query: 469
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 364
Effective length of database: 12,463,779
Effective search space: 4536815556
Effective search space used: 4536815556
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LNG01_0102_E06
(1407 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003132726.1| PREDICTED: cell surface glycoprotein CD200 r... 500 e-142
Alignment gi|NP_001230475.1| cell surface glycoprotein CD200 receptor 1 [... 414 e-116
Alignment gi|XP_003130435.2| PREDICTED: hemicentin-1-like [Sus scrofa]. 54 2e-07
>ref|XP_003132726.1| PREDICTED: cell surface glycoprotein CD200 receptor 1-like [Sus
scrofa].
Length = 271
Score = 500 bits (1287), Expect = e-142
Identities = 241/260 (92%), Positives = 241/260 (92%)
Frame = +3
Query: 282 EVNISLPVLVDTTAELYCPPVLWTTVVVATWEIVLRDKAPCFRAYRADTNETTSGNCTDE 461
EVNISLPVLVDTTAELYCPPVLWTTVVVATWE VLRDKAPCFRAYRADTNETTSGNCTDE
Sbjct: 12 EVNISLPVLVDTTAELYCPPVLWTTVVVATWETVLRDKAPCFRAYRADTNETTSGNCTDE 71
Query: 462 RIIWSSRLDQNPALQIGPVAITHDGYYRCQKVAPNGNFHRGYHLQVLVPPEVTLVQSENG 641
RIIWSSRLDQNPALQIGPVAITHDGYYRCQKVAPNGNFHRGYHLQVLVPPEVTLVQSENG
Sbjct: 72 RIIWSSRLDQNPALQIGPVAITHDGYYRCQKVAPNGNFHRGYHLQVLVPPEVTLVQSENG 131
Query: 642 TVVCKAVAGKPAAQISWTPEGDCVTEQNPHGGNGTVTVWSMCYWKARHVPNVSCTVSHVT 821
TVVCKAVAGKPAAQISWTPEGDCVTEQNPHGGNGTVTVWSMCYWKARHVPNVSCTVSHVT
Sbjct: 132 TVVCKAVAGKPAAQISWTPEGDCVTEQNPHGGNGTVTVWSMCYWKARHVPNVSCTVSHVT 191
Query: 822 GNKSLFLELNQGAGILGFPASYLLIILYXXXXXXXXXXXXXXXXXXQRTGDRRAMEKLYH 1001
GNKSLFLELNQGAGILGFPASYLLIILY QRTGDRRAMEKLYH
Sbjct: 192 GNKSLFLELNQGAGILGFPASYLLIILYVKFPLFLVILVIVGFLYFQRTGDRRAMEKLYH 251
Query: 1002 LLTQVPHFMKSSGDRRLLFY 1061
LLTQVPHFMKSSGDRRLLFY
Sbjct: 252 LLTQVPHFMKSSGDRRLLFY 271
>ref|NP_001230475.1| cell surface glycoprotein CD200 receptor 1 [Sus scrofa].
Length = 362
Score = 414 bits (1063), Expect = e-116
Identities = 196/201 (97%), Positives = 196/201 (97%)
Frame = +3
Query: 252 RKQSTVISPEEVNISLPVLVDTTAELYCPPVLWTTVVVATWEIVLRDKAPCFRAYRADTN 431
RKQSTV EVNISLPVLVDTTAELYCPPVLWTTVVVATWEIVLRDKAPCFRAYRADTN
Sbjct: 60 RKQSTVTPLAEVNISLPVLVDTTAELYCPPVLWTTVVVATWEIVLRDKAPCFRAYRADTN 119
Query: 432 ETTSGNCTDERIIWSSRLDQNPALQIGPVAITHDGYYRCQKVAPNGNFHRGYHLQVLVPP 611
ETTSGNCTDERIIWSSRLDQNPALQIGPVAITHDGYYRCQKVAPNGNFHRGYHLQVLVPP
Sbjct: 120 ETTSGNCTDERIIWSSRLDQNPALQIGPVAITHDGYYRCQKVAPNGNFHRGYHLQVLVPP 179
Query: 612 EVTLVQSENGTVVCKAVAGKPAAQISWTPEGDCVTEQNPHGGNGTVTVWSMCYWKARHVP 791
EV LVQSENGTVVCKAVAGKPAAQISWTPEGDCVTEQNPHGGNGTVTVWSMCYWKARHVP
Sbjct: 180 EVALVQSENGTVVCKAVAGKPAAQISWTPEGDCVTEQNPHGGNGTVTVWSMCYWKARHVP 239
Query: 792 NVSCTVSHVTGNKSLFLELNQ 854
NVSCTVSHVTGNKSLFLELNQ
Sbjct: 240 NVSCTVSHVTGNKSLFLELNQ 260
>ref|XP_003130435.2| PREDICTED: hemicentin-1-like [Sus scrofa].
Length = 780
Score = 54.3 bits (129), Expect = 2e-07
Identities = 40/160 (25%), Positives = 64/160 (40%), Gaps = 9/160 (5%)
Frame = +3
Query: 399 PCFRAYRADTNETTSGNCTDERIIWSSRLDQNPALQIGPVAITHDGYYRCQKVAPNGNFH 578
P F + + S + T ER R ++ L++ I G Y C G
Sbjct: 294 PVFSTSKLEVERVASQSYTHER---GGRHERGRTLRLMQTKIEDAGQYTCIVRNAAGEER 350
Query: 579 RGYHLQVLVPP---------EVTLVQSENGTVVCKAVAGKPAAQISWTPEGDCVTEQNPH 731
+ + L VLVPP +V + + +N T+ C+ V G P +I+W +G + E N H
Sbjct: 351 KTFGLSVLVPPHIVGENTLEDVKVKEKQNVTLTCE-VTGNPMPEITWQKDGQLLKEDNTH 409
Query: 732 GGNGTVTVWSMCYWKARHVPNVSCTVSHVTGNKSLFLELN 851
+ + H +C S+ G+KS LN
Sbjct: 410 HLMSGGRFLQITNAQVSHTGRYTCLASNTAGDKSKSFSLN 449
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,097,123
Number of extensions: 946348
Number of successful extensions: 2786
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2781
Number of HSP's successfully gapped: 3
Length of query: 469
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 366
Effective length of database: 8,779,541
Effective search space: 3213312006
Effective search space used: 3213312006
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LNG01_0102_E06
(1407 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 809 0.0
>Sscrofa_Chr13
|| Length = 218635234
Score = 809 bits (408), Expect = 0.0
Identities = 408/408 (100%)
Strand = Plus / Plus
Query: 977 cagggcaatggagaaactgtatcatctcctcacacaagtcccacatttcatgaagtcatc 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156665559 cagggcaatggagaaactgtatcatctcctcacacaagtcccacatttcatgaagtcatc 156665618
Query: 1037 tggggacagaagattgctattctactgagaatgccaggagttttgcagatccagcaaatc 1096
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156665619 tggggacagaagattgctattctactgagaatgccaggagttttgcagatccagcaaatc 156665678
Query: 1097 ttgatgaatttatcacattttctgaacagaatgtccaaatcttctgactgattcacccaa 1156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156665679 ttgatgaatttatcacattttctgaacagaatgtccaaatcttctgactgattcacccaa 156665738
Query: 1157 cactcattttaagatcacacaaggagccaagaacattggttgcacacagtggagaatcaa 1216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156665739 cactcattttaagatcacacaaggagccaagaacattggttgcacacagtggagaatcaa 156665798
Query: 1217 agagaggcaggaggcttcaggctggagcagcagtggtcggctggatgacatcactcattt 1276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156665799 agagaggcaggaggcttcaggctggagcagcagtggtcggctggatgacatcactcattt 156665858
Query: 1277 ttgaagggtaggactcatctctgggctgggtaaaactgacagagttgagatacttctcct 1336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156665859 ttgaagggtaggactcatctctgggctgggtaaaactgacagagttgagatacttctcct 156665918
Query: 1337 ggtctggtgtcccttcatgaaatatgaaaataaacgattgaagacagt 1384
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156665919 ggtctggtgtcccttcatgaaatatgaaaataaacgattgaagacagt 156665966
Score = 634 bits (320), Expect = e-179
Identities = 320/320 (100%)
Strand = Plus / Plus
Query: 284 agttaatatttcactacctgtactggtggatacaacggctgagctctattgccctcctgt 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156581696 agttaatatttcactacctgtactggtggatacaacggctgagctctattgccctcctgt 156581755
Query: 344 gctgtggacaactgtggtggtagcaacatgggaaatagtcctcagagacaaggccccctg 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156581756 gctgtggacaactgtggtggtagcaacatgggaaatagtcctcagagacaaggccccctg 156581815
Query: 404 cttcagagcctacagggctgatacaaatgagaccacatcaggaaactgtactgatgagag 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156581816 cttcagagcctacagggctgatacaaatgagaccacatcaggaaactgtactgatgagag 156581875
Query: 464 aataatctggtcctccagacttgaccagaatcctgcccttcagattggtccagtggccat 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156581876 aataatctggtcctccagacttgaccagaatcctgcccttcagattggtccagtggccat 156581935
Query: 524 cactcatgatgggtattacaggtgtcaaaaggtagcaccaaatgggaatttccatcgtgg 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156581936 cactcatgatgggtattacaggtgtcaaaaggtagcaccaaatgggaatttccatcgtgg 156581995
Query: 584 ctatcacctccaagtattag 603
||||||||||||||||||||
Sbjct: 156581996 ctatcacctccaagtattag 156582015
Score = 626 bits (316), Expect = e-177
Identities = 319/320 (99%)
Strand = Plus / Plus
Query: 284 agttaatatttcactacctgtactggtggatacaacggctgagctctattgccctcctgt 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156645289 agttaatatttcactacctgtactggtggatacaacggctgagctctattgccctcctgt 156645348
Query: 344 gctgtggacaactgtggtggtagcaacatgggaaatagtcctcagagacaaggccccctg 403
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 156645349 gctgtggacaactgtggtggtagcaacatgggaaacagtcctcagagacaaggccccctg 156645408
Query: 404 cttcagagcctacagggctgatacaaatgagaccacatcaggaaactgtactgatgagag 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156645409 cttcagagcctacagggctgatacaaatgagaccacatcaggaaactgtactgatgagag 156645468
Query: 464 aataatctggtcctccagacttgaccagaatcctgcccttcagattggtccagtggccat 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156645469 aataatctggtcctccagacttgaccagaatcctgcccttcagattggtccagtggccat 156645528
Query: 524 cactcatgatgggtattacaggtgtcaaaaggtagcaccaaatgggaatttccatcgtgg 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156645529 cactcatgatgggtattacaggtgtcaaaaggtagcaccaaatgggaatttccatcgtgg 156645588
Query: 584 ctatcacctccaagtattag 603
||||||||||||||||||||
Sbjct: 156645589 ctatcacctccaagtattag 156645608
Score = 507 bits (256), Expect = e-141
Identities = 256/256 (100%)
Strand = Plus / Plus
Query: 602 agtaccccctgaggtgaccctggttcaaagcgagaatggaactgtggtgtgcaaggcggt 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156582135 agtaccccctgaggtgaccctggttcaaagcgagaatggaactgtggtgtgcaaggcggt 156582194
Query: 662 cgcagggaagccggctgctcagatttcctggacccctgagggggactgtgtcactgagca 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156582195 cgcagggaagccggctgctcagatttcctggacccctgagggggactgtgtcactgagca 156582254
Query: 722 aaaccctcacgggggcaatggcacagtgactgtctggagtatgtgctactggaaggcccg 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156582255 aaaccctcacgggggcaatggcacagtgactgtctggagtatgtgctactggaaggcccg 156582314
Query: 782 tcatgtacctaatgtgtcctgcactgtctcccacgtgactggcaacaagagtctcttctt 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156582315 tcatgtacctaatgtgtcctgcactgtctcccacgtgactggcaacaagagtctcttctt 156582374
Query: 842 agagctgaatcaaggt 857
||||||||||||||||
Sbjct: 156582375 agagctgaatcaaggt 156582390
Score = 500 bits (252), Expect = e-138
Identities = 255/256 (99%)
Strand = Plus / Plus
Query: 602 agtaccccctgaggtgaccctggttcaaagcgagaatggaactgtggtgtgcaaggcggt 661
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 156645728 agtaccccctgaggtgaccctggttcaaagcgagaatggaactgtggtatgcaaggcggt 156645787
Query: 662 cgcagggaagccggctgctcagatttcctggacccctgagggggactgtgtcactgagca 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156645788 cgcagggaagccggctgctcagatttcctggacccctgagggggactgtgtcactgagca 156645847
Query: 722 aaaccctcacgggggcaatggcacagtgactgtctggagtatgtgctactggaaggcccg 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156645848 aaaccctcacgggggcaatggcacagtgactgtctggagtatgtgctactggaaggcccg 156645907
Query: 782 tcatgtacctaatgtgtcctgcactgtctcccacgtgactggcaacaagagtctcttctt 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156645908 tcatgtacctaatgtgtcctgcactgtctcccacgtgactggcaacaagagtctcttctt 156645967
Query: 842 agagctgaatcaaggt 857
||||||||||||||||
Sbjct: 156645968 agagctgaatcaaggt 156645983
Score = 404 bits (204), Expect = e-110
Identities = 220/224 (98%), Gaps = 1/224 (0%)
Strand = Plus / Plus
Query: 2 atacataacagagatgaagataaagtgaaatggcaaagaaaaatgataagcaatctggtt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156623779 atacataacagagatgaagataaagtgaaatggcaaagaaaaatgataagcaatctggtt 156623838
Query: 62 taactgagagtaaacaaaagtgaccaaaagagagagactcactgagtcaatgatcaattt 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 156623839 taactgagagtaaacaaaagtgaccaaaagagagagactcactgagtcaatgatcgattt 156623898
Query: 122 acagtagattcgtattaaagtagaaaatcaatcactccaaatgaagacattgaggaggac 181
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156623899 acagtagattcgtactaaagtagaaaatcaatcactccaaatgaagacattgaggaggac 156623958
Query: 182 ttcaacggagaagttactgatctctttcattatcatcctatctg 225
|||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 156623959 ttcaacagagaagttactgatctc-ttcattatcatcctatctg 156624001
Score = 254 bits (128), Expect = 1e-64
Identities = 128/128 (100%)
Strand = Plus / Plus
Query: 853 aaggtgccggaatcctgggatttccagcatcatacctgctgatcattctgtatgtgaaat 912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156659460 aaggtgccggaatcctgggatttccagcatcatacctgctgatcattctgtatgtgaaat 156659519
Query: 913 tccctcttttcttggttatcttggtcatcgtgggattcctctacttccagagaacaggtg 972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156659520 tccctcttttcttggttatcttggtcatcgtgggattcctctacttccagagaacaggtg 156659579
Query: 973 atcgcagg 980
||||||||
Sbjct: 156659580 atcgcagg 156659587
Score = 127 bits (64), Expect = 2e-26
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 225 gcttcaacaattacttcatctacagacagaaagcagagcactgtaatatctcctgaagaa 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156641453 gcttcaacaattacttcatctacagacagaaagcagagcactgtaatatctcctgaagaa 156641512
Query: 285 gttaatat 292
| ||||||
Sbjct: 156641513 ggtaatat 156641520
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 46,016,853
Number of extensions: 383
Number of successful extensions: 383
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 382
Number of HSP's successfully gapped: 8
Length of query: 1407
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1386
Effective length of database: 2,808,413,156
Effective search space: 3892460634216
Effective search space used: 3892460634216
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)