Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LVRM1_0039_H04
(1943 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_544472.2| PREDICTED: similar to synaptotagmin-like 1 [Can... 761 0.0
Alignment gi|XP_858503.1| PREDICTED: similar to synaptotagmin-like 2 isof... 249 9e-66
Alignment gi|XP_542272.2| PREDICTED: similar to synaptotagmin-like 2 isof... 249 9e-66
Alignment gi|XP_849308.1| PREDICTED: similar to synaptotagmin-like 2 isof... 249 9e-66
Alignment gi|XP_858394.1| PREDICTED: similar to synaptotagmin-like 2 isof... 249 9e-66
Alignment gi|XP_860982.1| PREDICTED: similar to synaptotagmin-like 5 isof... 170 5e-42
Alignment gi|XP_537994.2| PREDICTED: similar to synaptotagmin-like 5 isof... 170 5e-42
Alignment gi|XP_541172.2| PREDICTED: similar to synaptotagmin-like 3 [Can... 136 8e-32
Alignment gi|XP_533585.1| PREDICTED: similar to Synaptotagmin-5 (Synaptot... 100 7e-21
Alignment gi|XP_541476.2| PREDICTED: similar to synaptotagmin 3 [Canis fa... 99 1e-20
>ref|XP_544472.2| PREDICTED: similar to synaptotagmin-like 1 [Canis familiaris].
Length = 575
Score = 761 bits (1966), Expect = 0.0
Identities = 399/584 (68%), Positives = 416/584 (71%)
Frame = +1
Query: 67 PYWTPTGSHVCPAGAPPQLMPQRGHPSQEGLRVLPGLLMAHEPEPEADGLLDLSFLTEEE 246
P + +H CPAGA PQLMPQRGHPSQEGL LP L MAHEPEPEADGLLDLSFLTEEE
Sbjct: 6 PVYAAIRNHACPAGALPQLMPQRGHPSQEGLWALPSLPMAHEPEPEADGLLDLSFLTEEE 65
Query: 247 QEAIAEVLKRDAHLRQLEEGRVRKLRASLEDPGQLKILTGDWFQEARSQRHHHTHLGSDL 426
QEAIA+VLKRDAHLRQLEEGRV KLRAS+ DPGQLKILTGDWFQEARSQRHHH H GSDL
Sbjct: 66 QEAIADVLKRDAHLRQLEEGRVSKLRASVADPGQLKILTGDWFQEARSQRHHHAHFGSDL 125
Query: 427 VRASIRRKKGSRGDQARGSNGXXXXXXXXXXXXXXPRLPIDKAPQESLSEAEGPDFPSPY 606
VRASIRRKK S GDQA GS+G RLP+DKAPQE LS+A
Sbjct: 126 VRASIRRKKSSMGDQAPGSDGEAEAAEKDAEEEVESRLPMDKAPQEMLSKA--------- 176
Query: 607 VPTKASDNXXXXXXXXXXXXXDVQVXXXXXXXXXXXXXSGAEEEPQPRPAQTQEASEILE 786
KASD D QV G EEP P PAQTQ A EILE
Sbjct: 177 ---KASDQEEEPQAQEAPGPGDPQVSAEEADPEPEPRSRG--EEPPPPPAQTQAAPEILE 231
Query: 787 NGEEAPGPDPXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEAEAAAVQVRGSVHFALHYEP 966
NGEEAPGP GEAEA AVQVRGSVHFAL YEP
Sbjct: 232 NGEEAPGPGSSVDRMLSSSSSVSSLNSSTLSGSQLSLSGEAEAGAVQVRGSVHFALRYEP 291
Query: 967 GAAELRVHVIQCQGLXXXXXXXSDPYVKGYLLPDKQSKRKTTVKKRNLNPIFNETLRYSV 1146
G AELRVHVIQCQGL SDPYVK YLLPDKQSKRKTTVKKRNLNP+FNE LRYS+
Sbjct: 292 GPAELRVHVIQCQGLAAARRRRSDPYVKSYLLPDKQSKRKTTVKKRNLNPVFNEILRYSI 351
Query: 1147 PQAELQGRVLSLSVWHRESLGRNIFLGEVEVPLDTGNWDSEPTWLPLQPRVPPSPDALPS 1326
PQAEL+GRVLSLSVWHRESLGRNIFLGEVEVPLDT +WDSEPTWLPLQ R PPSPD LPS
Sbjct: 352 PQAELRGRVLSLSVWHRESLGRNIFLGEVEVPLDTWDWDSEPTWLPLQSRGPPSPDDLPS 411
Query: 1327 RGLLSLSLKYIPAGSEGAGLPPSGELHFWVKEAQDLVPLRSGSLDTYIQCSVLPDDXXXX 1506
RGLLSLSLKY+PA SEG GLPPSGELHFWVKEAQDLVPLRSG+LDTY+QCSVLPDD
Sbjct: 412 RGLLSLSLKYVPASSEGPGLPPSGELHFWVKEAQDLVPLRSGTLDTYVQCSVLPDDSRAS 471
Query: 1507 XXXXXXXXXXLNPMFNHTMVYDGFEPADLRQACAELSLWDHGTLAXXXXXXXXXXXXXXX 1686
L+P+FNHTMVYDGF PADLRQACAELSLWD G LA
Sbjct: 472 RQRTRVVRRSLSPVFNHTMVYDGFGPADLRQACAELSLWDQGALASRQLGGTRLSLGTGS 531
Query: 1687 XXXXXVPWMDSTPEEKQLWQTLLERPCEWVDGLLPLRTNLAPRT 1818
VPWMDST EE+QLWQTLLERPCEWVDGLLPLRTNL PRT
Sbjct: 532 SYGLQVPWMDSTSEERQLWQTLLERPCEWVDGLLPLRTNLVPRT 575
>ref|XP_858503.1| PREDICTED: similar to synaptotagmin-like 2 isoform a isoform 5 [Canis
familiaris].
Length = 932
Score = 249 bits (635), Expect = 9e-66
Identities = 125/300 (41%), Positives = 174/300 (58%), Gaps = 8/300 (2%)
Frame = +1
Query: 922 VQVRGSVHFALHYEPGAAELRVHVIQCQGLXXXXXXX--SDPYVKGYLLPDK--QSKRKT 1089
++V+G++ FA+ Y EL V V QC+ L SDPYVK YLLPDK K+KT
Sbjct: 624 LEVKGNIQFAIDYVDSLKELHVFVAQCKDLAAADIKKQRSDPYVKTYLLPDKGKMGKKKT 683
Query: 1090 TVKKRNLNPIFNETLRYSVPQAELQGRVLSLSVWHRESLGRNIFLGEVEVPLDTGNWDSE 1269
V K+ LNP++NE LRY + + L+ + L++SVWHR++ RN FLGEVE+ L+T +WD++
Sbjct: 684 LVVKKTLNPVYNEILRYKIEKQILKTQKLNVSVWHRDTFKRNSFLGEVELDLETWDWDNK 743
Query: 1270 PT----WLPLQPRVPPSPDALPSRGLLSLSLKYIPAGSEGAGLPPSGELHFWVKEAQDLV 1437
W PL+ + P P +RG + L+L+Y+P + G LP +GE+H WVKE DL
Sbjct: 744 QNKQLKWYPLKRKTAPVPLEAENRGEMKLALQYVPEPTPGKKLPTTGEVHIWVKECLDLP 803
Query: 1438 PLRSGSLDTYIQCSVLPDDXXXXXXXXXXXXXXLNPMFNHTMVYDGFEPADLRQACAELS 1617
LR L+++++C +LPD NP+FNHTMVYDGF P DL +AC EL+
Sbjct: 804 QLRGSHLNSFVKCIILPDTSRKSRQKTRAVGKTTNPVFNHTMVYDGFRPEDLTEACVELT 863
Query: 1618 LWDHGTLAXXXXXXXXXXXXXXXXXXXXVPWMDSTPEEKQLWQTLLERPCEWVDGLLPLR 1797
+WDH L V WMDST EE LW+ ++ P W++ LPLR
Sbjct: 864 VWDHHKLTNQFLGGLRIGFGTGKSYGTEVDWMDSTSEEVALWEKMVNSPNTWIEATLPLR 923
Score = 91.3 bits (225), Expect = 3e-18
Identities = 44/80 (55%), Positives = 62/80 (77%)
Frame = +1
Query: 214 LLDLSFLTEEEQEAIAEVLKRDAHLRQLEEGRVRKLRASLEDPGQLKILTGDWFQEARSQ 393
++DLSFLTEEEQEAI +VL+RDA L++ EE RVR L ++D QLK ++G WF EA+++
Sbjct: 1 MIDLSFLTEEEQEAIMKVLQRDAALKRAEEERVRHLPEKIKDDQQLKNMSGQWFYEAKAK 60
Query: 394 RHHHTHLGSDLVRASIRRKK 453
RH G+D++RAS+R+KK
Sbjct: 61 RHRDRIHGADIIRASMRKKK 80
>ref|XP_542272.2| PREDICTED: similar to synaptotagmin-like 2 isoform a isoform 1 [Canis
familiaris].
Length = 921
Score = 249 bits (635), Expect = 9e-66
Identities = 125/300 (41%), Positives = 174/300 (58%), Gaps = 8/300 (2%)
Frame = +1
Query: 922 VQVRGSVHFALHYEPGAAELRVHVIQCQGLXXXXXXX--SDPYVKGYLLPDK--QSKRKT 1089
++V+G++ FA+ Y EL V V QC+ L SDPYVK YLLPDK K+KT
Sbjct: 613 LEVKGNIQFAIDYVDSLKELHVFVAQCKDLAAADIKKQRSDPYVKTYLLPDKGKMGKKKT 672
Query: 1090 TVKKRNLNPIFNETLRYSVPQAELQGRVLSLSVWHRESLGRNIFLGEVEVPLDTGNWDSE 1269
V K+ LNP++NE LRY + + L+ + L++SVWHR++ RN FLGEVE+ L+T +WD++
Sbjct: 673 LVVKKTLNPVYNEILRYKIEKQILKTQKLNVSVWHRDTFKRNSFLGEVELDLETWDWDNK 732
Query: 1270 PT----WLPLQPRVPPSPDALPSRGLLSLSLKYIPAGSEGAGLPPSGELHFWVKEAQDLV 1437
W PL+ + P P +RG + L+L+Y+P + G LP +GE+H WVKE DL
Sbjct: 733 QNKQLKWYPLKRKTAPVPLEAENRGEMKLALQYVPEPTPGKKLPTTGEVHIWVKECLDLP 792
Query: 1438 PLRSGSLDTYIQCSVLPDDXXXXXXXXXXXXXXLNPMFNHTMVYDGFEPADLRQACAELS 1617
LR L+++++C +LPD NP+FNHTMVYDGF P DL +AC EL+
Sbjct: 793 QLRGSHLNSFVKCIILPDTSRKSRQKTRAVGKTTNPVFNHTMVYDGFRPEDLTEACVELT 852
Query: 1618 LWDHGTLAXXXXXXXXXXXXXXXXXXXXVPWMDSTPEEKQLWQTLLERPCEWVDGLLPLR 1797
+WDH L V WMDST EE LW+ ++ P W++ LPLR
Sbjct: 853 VWDHHKLTNQFLGGLRIGFGTGKSYGTEVDWMDSTSEEVALWEKMVNSPNTWIEATLPLR 912
Score = 91.3 bits (225), Expect = 3e-18
Identities = 44/80 (55%), Positives = 62/80 (77%)
Frame = +1
Query: 214 LLDLSFLTEEEQEAIAEVLKRDAHLRQLEEGRVRKLRASLEDPGQLKILTGDWFQEARSQ 393
++DLSFLTEEEQEAI +VL+RDA L++ EE RVR L ++D QLK ++G WF EA+++
Sbjct: 1 MIDLSFLTEEEQEAIMKVLQRDAALKRAEEERVRHLPEKIKDDQQLKNMSGQWFYEAKAK 60
Query: 394 RHHHTHLGSDLVRASIRRKK 453
RH G+D++RAS+R+KK
Sbjct: 61 RHRDRIHGADIIRASMRKKK 80
>ref|XP_849308.1| PREDICTED: similar to synaptotagmin-like 2 isoform a isoform 3 [Canis
familiaris].
Length = 908
Score = 249 bits (635), Expect = 9e-66
Identities = 125/300 (41%), Positives = 174/300 (58%), Gaps = 8/300 (2%)
Frame = +1
Query: 922 VQVRGSVHFALHYEPGAAELRVHVIQCQGLXXXXXXX--SDPYVKGYLLPDK--QSKRKT 1089
++V+G++ FA+ Y EL V V QC+ L SDPYVK YLLPDK K+KT
Sbjct: 600 LEVKGNIQFAIDYVDSLKELHVFVAQCKDLAAADIKKQRSDPYVKTYLLPDKGKMGKKKT 659
Query: 1090 TVKKRNLNPIFNETLRYSVPQAELQGRVLSLSVWHRESLGRNIFLGEVEVPLDTGNWDSE 1269
V K+ LNP++NE LRY + + L+ + L++SVWHR++ RN FLGEVE+ L+T +WD++
Sbjct: 660 LVVKKTLNPVYNEILRYKIEKQILKTQKLNVSVWHRDTFKRNSFLGEVELDLETWDWDNK 719
Query: 1270 PT----WLPLQPRVPPSPDALPSRGLLSLSLKYIPAGSEGAGLPPSGELHFWVKEAQDLV 1437
W PL+ + P P +RG + L+L+Y+P + G LP +GE+H WVKE DL
Sbjct: 720 QNKQLKWYPLKRKTAPVPLEAENRGEMKLALQYVPEPTPGKKLPTTGEVHIWVKECLDLP 779
Query: 1438 PLRSGSLDTYIQCSVLPDDXXXXXXXXXXXXXXLNPMFNHTMVYDGFEPADLRQACAELS 1617
LR L+++++C +LPD NP+FNHTMVYDGF P DL +AC EL+
Sbjct: 780 QLRGSHLNSFVKCIILPDTSRKSRQKTRAVGKTTNPVFNHTMVYDGFRPEDLTEACVELT 839
Query: 1618 LWDHGTLAXXXXXXXXXXXXXXXXXXXXVPWMDSTPEEKQLWQTLLERPCEWVDGLLPLR 1797
+WDH L V WMDST EE LW+ ++ P W++ LPLR
Sbjct: 840 VWDHHKLTNQFLGGLRIGFGTGKSYGTEVDWMDSTSEEVALWEKMVNSPNTWIEATLPLR 899
Score = 91.3 bits (225), Expect = 3e-18
Identities = 44/80 (55%), Positives = 62/80 (77%)
Frame = +1
Query: 214 LLDLSFLTEEEQEAIAEVLKRDAHLRQLEEGRVRKLRASLEDPGQLKILTGDWFQEARSQ 393
++DLSFLTEEEQEAI +VL+RDA L++ EE RVR L ++D QLK ++G WF EA+++
Sbjct: 1 MIDLSFLTEEEQEAIMKVLQRDAALKRAEEERVRHLPEKIKDDQQLKNMSGQWFYEAKAK 60
Query: 394 RHHHTHLGSDLVRASIRRKK 453
RH G+D++RAS+R+KK
Sbjct: 61 RHRDRIHGADIIRASMRKKK 80
>ref|XP_858394.1| PREDICTED: similar to synaptotagmin-like 2 isoform b isoform 4 [Canis
familiaris].
Length = 319
Score = 249 bits (635), Expect = 9e-66
Identities = 125/300 (41%), Positives = 174/300 (58%), Gaps = 8/300 (2%)
Frame = +1
Query: 922 VQVRGSVHFALHYEPGAAELRVHVIQCQGLXXXXXXX--SDPYVKGYLLPDK--QSKRKT 1089
++V+G++ FA+ Y EL V V QC+ L SDPYVK YLLPDK K+KT
Sbjct: 11 LEVKGNIQFAIDYVDSLKELHVFVAQCKDLAAADIKKQRSDPYVKTYLLPDKGKMGKKKT 70
Query: 1090 TVKKRNLNPIFNETLRYSVPQAELQGRVLSLSVWHRESLGRNIFLGEVEVPLDTGNWDSE 1269
V K+ LNP++NE LRY + + L+ + L++SVWHR++ RN FLGEVE+ L+T +WD++
Sbjct: 71 LVVKKTLNPVYNEILRYKIEKQILKTQKLNVSVWHRDTFKRNSFLGEVELDLETWDWDNK 130
Query: 1270 PT----WLPLQPRVPPSPDALPSRGLLSLSLKYIPAGSEGAGLPPSGELHFWVKEAQDLV 1437
W PL+ + P P +RG + L+L+Y+P + G LP +GE+H WVKE DL
Sbjct: 131 QNKQLKWYPLKRKTAPVPLEAENRGEMKLALQYVPEPTPGKKLPTTGEVHIWVKECLDLP 190
Query: 1438 PLRSGSLDTYIQCSVLPDDXXXXXXXXXXXXXXLNPMFNHTMVYDGFEPADLRQACAELS 1617
LR L+++++C +LPD NP+FNHTMVYDGF P DL +AC EL+
Sbjct: 191 QLRGSHLNSFVKCIILPDTSRKSRQKTRAVGKTTNPVFNHTMVYDGFRPEDLTEACVELT 250
Query: 1618 LWDHGTLAXXXXXXXXXXXXXXXXXXXXVPWMDSTPEEKQLWQTLLERPCEWVDGLLPLR 1797
+WDH L V WMDST EE LW+ ++ P W++ LPLR
Sbjct: 251 VWDHHKLTNQFLGGLRIGFGTGKSYGTEVDWMDSTSEEVALWEKMVNSPNTWIEATLPLR 310
>ref|XP_860982.1| PREDICTED: similar to synaptotagmin-like 5 isoform 2 [Canis
familiaris].
Length = 754
Score = 170 bits (430), Expect = 5e-42
Identities = 109/324 (33%), Positives = 165/324 (50%), Gaps = 29/324 (8%)
Frame = +1
Query: 922 VQVRGSVHFALHYEPGAAELRVHVIQCQGLXXXXXXX--SDPYVKGYLLPDKQ--SKRKT 1089
V+V G + + Y L + V C+ L +D YVK YLLPDK +KRKT
Sbjct: 428 VKVSGEILLHISYCYKTGGLYIFVKNCRNLAIGDEKKQRTDAYVKSYLLPDKSRNNKRKT 487
Query: 1090 TVKKRNLNPIFNETLRYSVPQAELQGRVLSLSVWHRESLGRNIFLGEVEVPLDTGNWDS- 1266
++ NP FNETL+Y++ +L+ R L LSVWH + GRN FLGEVE+P D+ N+++
Sbjct: 488 KIRT-GTNPEFNETLKYTISHTQLETRTLQLSVWHYDRFGRNSFLGEVEIPFDSWNFENP 546
Query: 1267 EPTWLPLQPRVPPSPD-ALPSRGLLSLSLKYIPAGSEGAGLP------------------ 1389
W LQP+V + D L +G L++SL+YIP E LP
Sbjct: 547 SDEWFVLQPKVEFAADIGLHYKGELTVSLRYIPP-EENLMLPLGQVQGRKTFKRGKKKES 605
Query: 1390 ---PSGELHFWVKEAQDLVPLRS-GSLDTYIQCSVLPDDXXXXXXXXXXXXXXLNPMFNH 1557
G L ++KEA++L ++S G+ D++++ +LPDD +NP +NH
Sbjct: 606 PVISGGILEVFIKEAKNLTAVKSGGTSDSFVKGYLLPDDSKATKHKTVVIKKSVNPQWNH 665
Query: 1558 TMVYDGFEPADLRQACAELSLWDHGTL-AXXXXXXXXXXXXXXXXXXXXVPWMDSTPEEK 1734
T ++ G P D++ C EL++WD + V WMDS EE+
Sbjct: 666 TFMFSGLNPQDIKNVCLELTVWDKEAFSSNIFLGGVRLNSGTGVSHGKNVDWMDSQGEEQ 725
Query: 1735 QLWQTLLERPCEWVDGLLPLRTNL 1806
+LWQ + + P V+G+L LR+++
Sbjct: 726 RLWQKMADNPGIPVEGVLMLRSSM 749
>ref|XP_537994.2| PREDICTED: similar to synaptotagmin-like 5 isoform 1 [Canis
familiaris].
Length = 732
Score = 170 bits (430), Expect = 5e-42
Identities = 109/324 (33%), Positives = 165/324 (50%), Gaps = 29/324 (8%)
Frame = +1
Query: 922 VQVRGSVHFALHYEPGAAELRVHVIQCQGLXXXXXXX--SDPYVKGYLLPDKQ--SKRKT 1089
V+V G + + Y L + V C+ L +D YVK YLLPDK +KRKT
Sbjct: 406 VKVSGEILLHISYCYKTGGLYIFVKNCRNLAIGDEKKQRTDAYVKSYLLPDKSRNNKRKT 465
Query: 1090 TVKKRNLNPIFNETLRYSVPQAELQGRVLSLSVWHRESLGRNIFLGEVEVPLDTGNWDS- 1266
++ NP FNETL+Y++ +L+ R L LSVWH + GRN FLGEVE+P D+ N+++
Sbjct: 466 KIRT-GTNPEFNETLKYTISHTQLETRTLQLSVWHYDRFGRNSFLGEVEIPFDSWNFENP 524
Query: 1267 EPTWLPLQPRVPPSPD-ALPSRGLLSLSLKYIPAGSEGAGLP------------------ 1389
W LQP+V + D L +G L++SL+YIP E LP
Sbjct: 525 SDEWFVLQPKVEFAADIGLHYKGELTVSLRYIPP-EENLMLPLGQVQGRKTFKRGKKKES 583
Query: 1390 ---PSGELHFWVKEAQDLVPLRS-GSLDTYIQCSVLPDDXXXXXXXXXXXXXXLNPMFNH 1557
G L ++KEA++L ++S G+ D++++ +LPDD +NP +NH
Sbjct: 584 PVISGGILEVFIKEAKNLTAVKSGGTSDSFVKGYLLPDDSKATKHKTVVIKKSVNPQWNH 643
Query: 1558 TMVYDGFEPADLRQACAELSLWDHGTL-AXXXXXXXXXXXXXXXXXXXXVPWMDSTPEEK 1734
T ++ G P D++ C EL++WD + V WMDS EE+
Sbjct: 644 TFMFSGLNPQDIKNVCLELTVWDKEAFSSNIFLGGVRLNSGTGVSHGKNVDWMDSQGEEQ 703
Query: 1735 QLWQTLLERPCEWVDGLLPLRTNL 1806
+LWQ + + P V+G+L LR+++
Sbjct: 704 RLWQKMADNPGIPVEGVLMLRSSM 727
>ref|XP_541172.2| PREDICTED: similar to synaptotagmin-like 3 [Canis familiaris].
Length = 542
Score = 136 bits (342), Expect = 8e-32
Identities = 98/308 (31%), Positives = 146/308 (47%), Gaps = 19/308 (6%)
Frame = +1
Query: 928 VRGSVHFALHYEPGAAELRVHVIQCQGLXXXXXXXS--DPYVKGYLLPDK--QSKRKTTV 1095
V G + FA+ Y L + + C+ L +PYVK YLLPD+ Q KRKT +
Sbjct: 238 VSGEIEFAIRYCFKTCSLEICIKACKNLAYGEEKKKKCNPYVKTYLLPDRSSQGKRKTGI 297
Query: 1096 KKRNLNPIFNETLRYSVPQAELQGRVLSLSVWHRESLGRNIFLGEVEVPLDTGNWDSEPT 1275
+K ++P F ETL+Y V A+L R L +SVWH +L R +FLGEV +PL T +++ T
Sbjct: 298 QKNTVDPTFQETLKYEVEPAQLATRWLQVSVWHLGTLTRRVFLGEVTIPLATWDFEDSTT 357
Query: 1276 ----WLPLQPRVPPSPDA-LPSRGLLSLSLKYI-PAGS-------EGAGLP-PSGELHFW 1413
W PL+ + D+ LP+ G L++ K + PAG EG P P+G+L
Sbjct: 358 QCFCWYPLRAKAEKVDDSILPNNGELAVRAKLVFPAGPRKFQEALEGTDWPSPNGQLCLV 417
Query: 1414 VKEAQDLVPLRSGSLDTYIQ-CSVLPDDXXXXXXXXXXXXXXLNPMFNHTMVYDGFEPAD 1590
V A++L G+L+++++ C LPD P + H+ V++G P+
Sbjct: 418 VLGAKNLPVRSDGTLNSFVKGCLTLPDQHKLKLKSPVAKKQAC-PRWQHSFVFNGVSPSQ 476
Query: 1591 LRQACAELSLWDHGTLAXXXXXXXXXXXXXXXXXXXXVPWMDSTPEEKQLWQTLLERPCE 1770
LRQ+ EL++WD A D + + WQ +L P
Sbjct: 477 LRQSSLELTVWDQ---AIFGVSDRLLGEARLGSRENVAGGRDMCSQSELQWQKVLSSPNL 533
Query: 1771 WVDGLLPL 1794
W D L L
Sbjct: 534 WTDMTLVL 541
>ref|XP_533585.1| PREDICTED: similar to Synaptotagmin-5 (Synaptotagmin V) (SytV) [Canis
familiaris].
Length = 386
Score = 100 bits (248), Expect = 7e-21
Identities = 74/248 (29%), Positives = 121/248 (48%), Gaps = 4/248 (1%)
Frame = +1
Query: 907 AEAAAVQVRGSVHFALHYEPGAAELRVHVIQCQGLXXXXXXXS-DPYVKGYLLPDKQSKR 1083
++AA G + ++L Y+ + +L V ++Q +GL S DPYV+ YLLPDK+ +
Sbjct: 101 SQAAEKHELGRLQYSLDYDFQSGQLLVGIVQAEGLAALDLGGSSDPYVRVYLLPDKRRRH 160
Query: 1084 KTTVKKRNLNPIFNETLRYSVPQAELQGRVLSLSVWHRESLGRNIFLGEVEVPLDTGNWD 1263
+T V ++ LNP F E + VP EL GRVL ++V+ + RN +GEV VP+ + +
Sbjct: 161 ETKVHRQTLNPHFGENFAFKVPYVELGGRVLVMAVYDFDRFSRNDAIGEVRVPMSSVDLG 220
Query: 1264 SEP-TWLPLQPRVPPSPDALPSRGLLSLSLKYIPAGSEGAGLPPSGELHFWVKEAQDLVP 1440
W LQ + L G + SL+Y+P +G+L V EA++L
Sbjct: 221 RPVLAWRELQAAPREEQEKL---GDICFSLRYVPT---------AGKLTVIVLEAKNLKK 268
Query: 1441 LRSGSL-DTYIQCSVLPDDXXXXXXXXXXXXXXLNPMFNHTMVYDGFEPAD-LRQACAEL 1614
+ G L D Y++ +L LNP +N ++ P D +++ EL
Sbjct: 269 MDVGGLSDPYVKVHLLQGGKKVRKKKTTIKKNTLNPYYNEAFSFE--VPCDQVQKVQVEL 326
Query: 1615 SLWDHGTL 1638
++ D+ L
Sbjct: 327 TVLDYDKL 334
Score = 68.9 bits (167), Expect = 2e-11
Identities = 42/110 (38%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Frame = +1
Query: 934 GSVHFALHYEPGAAELRVHVIQCQGLXXXXXXX-SDPYVKGYLLPD--KQSKRKTTVKKR 1104
G + F+L Y P A +L V V++ + L SDPYVK +LL K K+KTT+KK
Sbjct: 241 GDICFSLRYVPTAGKLTVIVLEAKNLKKMDVGGLSDPYVKVHLLQGGKKVRKKKTTIKKN 300
Query: 1105 NLNPIFNETLRYSVPQAELQGRVLSLSVWHRESLGRNIFLGEVEVPLDTG 1254
LNP +NE + VP ++Q + L+V + LG+N +G V V G
Sbjct: 301 TLNPYYNEAFSFEVPCDQVQKVQVELTVLDYDKLGKNEAIGRVAVGAAAG 350
>ref|XP_541476.2| PREDICTED: similar to synaptotagmin 3 [Canis familiaris].
Length = 591
Score = 99.0 bits (245), Expect = 1e-20
Identities = 71/226 (31%), Positives = 108/226 (47%), Gaps = 2/226 (0%)
Frame = +1
Query: 901 GEAEAAAVQVRGSVHFALHYEPGAAELRVHVIQCQGLXXXXXXX-SDPYVKGYLLPDKQS 1077
G EA G + FAL Y G+ +L V ++Q L SDPYVK YLLPD++
Sbjct: 291 GSGEAGVGAPCGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKK 350
Query: 1078 KRKTTVKKRNLNPIFNETLRYSVPQAELQGRVLSLSVWHRESLGRNIFLGEVEVPLDTGN 1257
K +T V ++ LNP+FNET ++SVP AEL R L SV+ + R+ +G+V + +
Sbjct: 351 KFQTKVHRKTLNPVFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLD-NLLE 409
Query: 1258 WDSEPTWLPLQPRVPPSPDALPSRGLLSLSLKYIPAGSEGAGLPPSGELHFWVKEAQDLV 1437
+P PL + G L+ SL Y LP +G L + +A +L
Sbjct: 410 LAEQPPDRPLWRDIVEGGSEKADLGELNFSLCY---------LPTAGRLTVTIIKASNLK 460
Query: 1438 PL-RSGSLDTYIQCSVLPDDXXXXXXXXXXXXXXLNPMFNHTMVYD 1572
+ +G D Y++ S++ + LNP +N +V+D
Sbjct: 461 AMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 506
Score = 64.7 bits (156), Expect = 3e-10
Identities = 42/128 (32%), Positives = 63/128 (49%), Gaps = 5/128 (3%)
Frame = +1
Query: 934 GSVHFALHYEPGAAELRVHVIQCQGLXXXXXXX-SDPYVKGYLLPD--KQSKRKTTVKKR 1104
G ++F+L Y P A L V +I+ L SDPYVK L+ + + KRKT++KK
Sbjct: 434 GELNFSLCYLPTAGRLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKN 493
Query: 1105 NLNPIFNETLRYSVPQAELQGRVLSLSVWHRESLGRNIFLGEVEVPLDTGNWDSEPTWLP 1284
LNP +NE L + V ++ LS++V + +G N +G V D + W
Sbjct: 494 TLNPTYNEALVFDVAPESVESVGLSIAVVDYDCIGHNEVIGVCRVGPDAADPHGREHWAE 553
Query: 1285 L--QPRVP 1302
+ PR P
Sbjct: 554 MLANPRKP 561
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.315 0.135 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 71,567,135
Number of extensions: 2125278
Number of successful extensions: 15443
Number of sequences better than 1.0e-05: 50
Number of HSP's gapped: 14474
Number of HSP's successfully gapped: 66
Length of query: 647
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 538
Effective length of database: 15,240,880
Effective search space: 8199593440
Effective search space used: 8199593440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 36 (18.5 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LVRM1_0039_H04
(1943 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002685738.1| PREDICTED: synaptotagmin-like 1 [Bos taurus]. 734 0.0
Alignment gi|XP_606038.3| PREDICTED: synaptotagmin-like 1 [Bos taurus]. 493 e-139
Alignment gi|NP_001095748.1| synaptotagmin-like protein 2 [Bos taurus]. 251 2e-66
Alignment gi|NP_001179362.1| synaptotagmin-like protein 4 [Bos taurus]. 191 2e-48
Alignment gi|XP_002699859.1| PREDICTED: synaptotagmin-like protein 4-like... 191 2e-48
Alignment gi|XP_002700261.1| PREDICTED: synaptotagmin-like 5 [Bos taurus]. 177 2e-44
Alignment gi|XP_616807.4| PREDICTED: synaptotagmin-like 5, partial [Bos t... 177 2e-44
Alignment gi|XP_002683755.1| PREDICTED: synaptotagmin-like 3-like isoform... 135 1e-31
Alignment gi|XP_002683754.1| PREDICTED: synaptotagmin-like 3-like isoform... 135 1e-31
Alignment gi|XP_869170.3| PREDICTED: synaptotagmin-like 3 isoform 2 [Bos ... 135 1e-31
>ref|XP_002685738.1| PREDICTED: synaptotagmin-like 1 [Bos taurus].
Length = 553
Score = 734 bits (1894), Expect = 0.0
Identities = 384/565 (67%), Positives = 401/565 (70%)
Frame = +1
Query: 124 MPQRGHPSQEGLRVLPGLLMAHEPEPEADGLLDLSFLTEEEQEAIAEVLKRDAHLRQLEE 303
MPQRGHP+ EG LPGLLMA EPEPEADGLLDLSFLTEEEQEAIAEVLKRDAHLRQLEE
Sbjct: 1 MPQRGHPAPEGPWSLPGLLMAREPEPEADGLLDLSFLTEEEQEAIAEVLKRDAHLRQLEE 60
Query: 304 GRVRKLRASLEDPGQLKILTGDWFQEARSQRHHHTHLGSDLVRASIRRKKGSRGDQARGS 483
GR+ KLRASL DPGQLKILTGDWFQEARSQRHHH H GSDLVRASIRRKKG R DQA GS
Sbjct: 61 GRISKLRASLADPGQLKILTGDWFQEARSQRHHHAHFGSDLVRASIRRKKGCRRDQAGGS 120
Query: 484 NGXXXXXXXXXXXXXXPRLPIDKAPQESLSEAEGPDFPSPYVPTKASDNXXXXXXXXXXX 663
+ PRL +D+ PQE EAE + P D
Sbjct: 121 DVEAEAAGKETEEALEPRLSVDEGPQERFIEAEPSEQEEE--PQAEEDEREGHPLVVAGE 178
Query: 664 XXDVQVXXXXXXXXXXXXXSGAEEEPQPRPAQTQEASEILENGEEAPGPDPXXXXXXXXX 843
D ++ S EEEPQ PAQTQ ASE+LENGEE PGPD
Sbjct: 179 EADPEMQPP----------SMGEEEPQTPPAQTQAASEMLENGEENPGPDSSFDRMLSSS 228
Query: 844 XXXXXXXXXXXXXXXXXXXGEAEAAAVQVRGSVHFALHYEPGAAELRVHVIQCQGLXXXX 1023
GE EA AVQVRGSVHFAL YEPGAAELRVHVIQCQGL
Sbjct: 229 SSMSSLNSSTLSGSQMSLSGEPEAGAVQVRGSVHFALRYEPGAAELRVHVIQCQGLAAAR 288
Query: 1024 XXXSDPYVKGYLLPDKQSKRKTTVKKRNLNPIFNETLRYSVPQAELQGRVLSLSVWHRES 1203
SDPYVK YLLPDKQSKRKTTVKKRNLNP+FNE LRYSVPQ EL+GRVLSLSVWHRES
Sbjct: 289 RRRSDPYVKSYLLPDKQSKRKTTVKKRNLNPVFNEILRYSVPQTELRGRVLSLSVWHRES 348
Query: 1204 LGRNIFLGEVEVPLDTGNWDSEPTWLPLQPRVPPSPDALPSRGLLSLSLKYIPAGSEGAG 1383
LGRNIFLGEVEVPLDT +WDSEPTWLPLQPRVPPSPD LPSRGLLSLSLKY+PAGSEG G
Sbjct: 349 LGRNIFLGEVEVPLDTWDWDSEPTWLPLQPRVPPSPDDLPSRGLLSLSLKYLPAGSEGPG 408
Query: 1384 LPPSGELHFWVKEAQDLVPLRSGSLDTYIQCSVLPDDXXXXXXXXXXXXXXLNPMFNHTM 1563
LPPSGELHFWVKE QDL+PLRSGS DT++QCSVLPDD LNPMFNHTM
Sbjct: 409 LPPSGELHFWVKEVQDLIPLRSGSPDTFVQCSVLPDDSRASRQRTRVVRRSLNPMFNHTM 468
Query: 1564 VYDGFEPADLRQACAELSLWDHGTLAXXXXXXXXXXXXXXXXXXXXVPWMDSTPEEKQLW 1743
VYDGF P DLRQACAELSLWDHG L VPWMDST EE+QLW
Sbjct: 469 VYDGFGPTDLRQACAELSLWDHGALGSRQLGGTRLSLGTGSSYGLQVPWMDSTREERQLW 528
Query: 1744 QTLLERPCEWVDGLLPLRTNLAPRT 1818
QTLLERPCEWVDGLLPLRTNLAPRT
Sbjct: 529 QTLLERPCEWVDGLLPLRTNLAPRT 553
>ref|XP_606038.3| PREDICTED: synaptotagmin-like 1 [Bos taurus].
Length = 468
Score = 493 bits (1268), Expect = e-139
Identities = 241/306 (78%), Positives = 249/306 (81%)
Frame = +1
Query: 901 GEAEAAAVQVRGSVHFALHYEPGAAELRVHVIQCQGLXXXXXXXSDPYVKGYLLPDKQSK 1080
GE EA AVQVRGSVHFAL YEPGAAELRVHVIQCQGL SDPYVK YLLPDKQSK
Sbjct: 163 GEPEAGAVQVRGSVHFALRYEPGAAELRVHVIQCQGLAAARRRRSDPYVKSYLLPDKQSK 222
Query: 1081 RKTTVKKRNLNPIFNETLRYSVPQAELQGRVLSLSVWHRESLGRNIFLGEVEVPLDTGNW 1260
RKTTVKKRNLNP+FNE LRYSVPQ EL+GRVLSLSVWHRESLGRNIFLGEVEVPLDT +W
Sbjct: 223 RKTTVKKRNLNPVFNEILRYSVPQTELRGRVLSLSVWHRESLGRNIFLGEVEVPLDTWDW 282
Query: 1261 DSEPTWLPLQPRVPPSPDALPSRGLLSLSLKYIPAGSEGAGLPPSGELHFWVKEAQDLVP 1440
DSEPTWLPLQPRVPPSPD LPSRGLLSLSLKY+PAGSEG GLPPSGELHFWVKE QDL+P
Sbjct: 283 DSEPTWLPLQPRVPPSPDDLPSRGLLSLSLKYLPAGSEGPGLPPSGELHFWVKEVQDLIP 342
Query: 1441 LRSGSLDTYIQCSVLPDDXXXXXXXXXXXXXXLNPMFNHTMVYDGFEPADLRQACAELSL 1620
LRSGS DT++QCSVLPDD LNPMFNHTMVYDGF P DLRQACAELSL
Sbjct: 343 LRSGSPDTFVQCSVLPDDSRASRQRTRVVRRSLNPMFNHTMVYDGFGPTDLRQACAELSL 402
Query: 1621 WDHGTLAXXXXXXXXXXXXXXXXXXXXVPWMDSTPEEKQLWQTLLERPCEWVDGLLPLRT 1800
WDHG L VPWMDST EE+QLWQTLLERPCEWVDGLLPLRT
Sbjct: 403 WDHGALGSRQLGGTRLSLGTGSSYGLQVPWMDSTREERQLWQTLLERPCEWVDGLLPLRT 462
Query: 1801 NLAPRT 1818
NLAPRT
Sbjct: 463 NLAPRT 468
Score = 226 bits (575), Expect = 7e-59
Identities = 116/153 (75%), Positives = 121/153 (79%)
Frame = +1
Query: 124 MPQRGHPSQEGLRVLPGLLMAHEPEPEADGLLDLSFLTEEEQEAIAEVLKRDAHLRQLEE 303
MPQRGHP+ EG LPGLLMA EPEPEADGLLDLSFLTEEEQEAIAEVLKRDAHLRQLEE
Sbjct: 1 MPQRGHPAPEGPWSLPGLLMAREPEPEADGLLDLSFLTEEEQEAIAEVLKRDAHLRQLEE 60
Query: 304 GRVRKLRASLEDPGQLKILTGDWFQEARSQRHHHTHLGSDLVRASIRRKKGSRGDQARGS 483
GR+ KLRASL DPGQLKILTGDWFQEARSQRHHH H GSDLVRASIRRKKG R DQA GS
Sbjct: 61 GRISKLRASLADPGQLKILTGDWFQEARSQRHHHAHFGSDLVRASIRRKKGCRRDQAGGS 120
Query: 484 NGXXXXXXXXXXXXXXPRLPIDKAPQESLSEAE 582
+ PRL +D+ PQE EAE
Sbjct: 121 DVEAEAAGKETEEALEPRLSVDEGPQERFIEAE 153
>ref|NP_001095748.1| synaptotagmin-like protein 2 [Bos taurus].
Length = 943
Score = 251 bits (641), Expect = 2e-66
Identities = 127/300 (42%), Positives = 176/300 (58%), Gaps = 8/300 (2%)
Frame = +1
Query: 922 VQVRGSVHFALHYEPGAAELRVHVIQCQGLXXXXXXX--SDPYVKGYLLPDK--QSKRKT 1089
++V+GS+ FA+ Y EL V V QC+ L SDPYVK YLLPDK K+KT
Sbjct: 635 LEVKGSIQFAIDYVDSLKELHVFVAQCKDLAAADIKKQRSDPYVKTYLLPDKGKMGKKKT 694
Query: 1090 TVKKRNLNPIFNETLRYSVPQAELQGRVLSLSVWHRESLGRNIFLGEVEVPLDTGNWDSE 1269
V K+ LNP++NE LRY + + L+ + L+LSVWHR++ RN FLGEVE+ L+T +WD++
Sbjct: 695 LVVKKTLNPVYNEILRYKINKQILKTQKLNLSVWHRDTFKRNSFLGEVELDLETWDWDNK 754
Query: 1270 PT----WLPLQPRVPPSPDALPSRGLLSLSLKYIPAGSEGAGLPPSGELHFWVKEAQDLV 1437
W PL+ + P P +RG + L+L+Y+P G LP +GE+H WVKE DL
Sbjct: 755 QNKQLKWYPLKRKTAPVPLEAENRGEMKLALQYVPEPVPGKKLPTTGEVHIWVKECLDLP 814
Query: 1438 PLRSGSLDTYIQCSVLPDDXXXXXXXXXXXXXXLNPMFNHTMVYDGFEPADLRQACAELS 1617
LR L+++++C++LPD NP+FNHTMVYDGF P DL +AC EL+
Sbjct: 815 LLRGSHLNSFVKCTILPDTSRKSRQKTRAVGKTTNPVFNHTMVYDGFRPEDLTEACVELT 874
Query: 1618 LWDHGTLAXXXXXXXXXXXXXXXXXXXXVPWMDSTPEEKQLWQTLLERPCEWVDGLLPLR 1797
+WDH L V WMDST EE LW+ +++ P W++ +LPLR
Sbjct: 875 VWDHYKLTNQFLGGLRIGFGTGKSYGTEVDWMDSTSEEVALWEKMVKSPNTWIEAILPLR 934
Score = 89.4 bits (220), Expect = 1e-17
Identities = 43/86 (50%), Positives = 63/86 (73%)
Frame = +1
Query: 214 LLDLSFLTEEEQEAIAEVLKRDAHLRQLEEGRVRKLRASLEDPGQLKILTGDWFQEARSQ 393
++DLSFLTEEEQEAI +VL+RDA L++ EE RVR L ++D QLK ++G WF EA+++
Sbjct: 1 MIDLSFLTEEEQEAIMKVLQRDAALKRAEEERVRHLPEKVKDDQQLKNMSGQWFYEAKAK 60
Query: 394 RHHHTHLGSDLVRASIRRKKGSRGDQ 471
RH G+D++R S+R+K+ D+
Sbjct: 61 RHRDRIHGADIIRVSMRKKRPQVADE 86
>ref|NP_001179362.1| synaptotagmin-like protein 4 [Bos taurus].
Length = 671
Score = 191 bits (485), Expect = 2e-48
Identities = 118/310 (38%), Positives = 163/310 (52%), Gaps = 16/310 (5%)
Frame = +1
Query: 928 VRGSVHFALHYEPGAAELRVHVIQCQGLXXXXXXX--SDPYVKGYLLPDK--QSKRKTTV 1095
V G + F+L YE L +HV +CQ L S+PYVK YLLPDK Q KRKT++
Sbjct: 356 VTGKIAFSLKYEQQTQALVIHVKECQQLAYADEAKKRSNPYVKAYLLPDKSRQGKRKTSI 415
Query: 1096 KKRNLNPIFNETLRYSVPQAELQGRVLSLSVWHRESLGRNIFLGEVEVPLDTGNWDSE-P 1272
K+ +NP+++E LRY +P++ L R L SVWH GRN FLGE EV +D+ D +
Sbjct: 416 KQDTINPLYDEILRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEVQMDSWKLDKKLD 475
Query: 1273 TWLPLQPRV-PPSPDALPS-RGLLSLSLKYIPAGSEGAGLP-------PSGELHFWVKEA 1425
LPL ++ S +LP+ +G L +SLKYIPA G GEL W+KEA
Sbjct: 476 HCLPLHGKISAESSTSLPAHKGELVVSLKYIPASKLPVGSDRKKSKGGEGGELQVWIKEA 535
Query: 1426 QDLVPLR-SGSLDTYIQCSVLPDDXXXXXXXXXXXXXXLNPMFNHTMVYDGFEPADLRQA 1602
++L + G+ D++++ +LP LNP +NHT VY+G DL+
Sbjct: 536 KNLTAAKLGGTSDSFVKGYLLPLRNKASKRKTPVVKKTLNPHYNHTFVYNGVRLEDLQHM 595
Query: 1603 CAELSLWDHGTLA-XXXXXXXXXXXXXXXXXXXXVPWMDSTPEEKQLWQTLLERPCEWVD 1779
C EL++WD LA V WMDST EE LWQ + + P W +
Sbjct: 596 CLELTVWDREPLASNDFLGGVRLSVGTGISNGEVVDWMDSTGEEVSLWQKMRQYPGSWAE 655
Query: 1780 GLLPLRTNLA 1809
G L LR+++A
Sbjct: 656 GTLQLRSSMA 665
>ref|XP_002699859.1| PREDICTED: synaptotagmin-like protein 4-like [Bos taurus].
Length = 671
Score = 191 bits (485), Expect = 2e-48
Identities = 118/310 (38%), Positives = 163/310 (52%), Gaps = 16/310 (5%)
Frame = +1
Query: 928 VRGSVHFALHYEPGAAELRVHVIQCQGLXXXXXXX--SDPYVKGYLLPDK--QSKRKTTV 1095
V G + F+L YE L +HV +CQ L S+PYVK YLLPDK Q KRKT++
Sbjct: 356 VTGKIAFSLKYEQQTQALVIHVKECQQLAYADEAKKRSNPYVKAYLLPDKSRQGKRKTSI 415
Query: 1096 KKRNLNPIFNETLRYSVPQAELQGRVLSLSVWHRESLGRNIFLGEVEVPLDTGNWDSE-P 1272
K+ +NP+++E LRY +P++ L R L SVWH GRN FLGE EV +D+ D +
Sbjct: 416 KQDTINPLYDEILRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEVQMDSWKLDKKLD 475
Query: 1273 TWLPLQPRV-PPSPDALPS-RGLLSLSLKYIPAGSEGAGLP-------PSGELHFWVKEA 1425
LPL ++ S +LP+ +G L +SLKYIPA G GEL W+KEA
Sbjct: 476 HCLPLHGKISAESSTSLPAHKGELVVSLKYIPASKLPVGSDRKKSKGGEGGELQVWIKEA 535
Query: 1426 QDLVPLR-SGSLDTYIQCSVLPDDXXXXXXXXXXXXXXLNPMFNHTMVYDGFEPADLRQA 1602
++L + G+ D++++ +LP LNP +NHT VY+G DL+
Sbjct: 536 KNLTAAKLGGTSDSFVKGYLLPLRNKASKRKTPVVKKTLNPHYNHTFVYNGVRLEDLQHM 595
Query: 1603 CAELSLWDHGTLA-XXXXXXXXXXXXXXXXXXXXVPWMDSTPEEKQLWQTLLERPCEWVD 1779
C EL++WD LA V WMDST EE LWQ + + P W +
Sbjct: 596 CLELTVWDREPLASNDFLGGVRLSVGTGISNGEVVDWMDSTGEEVSLWQKMRQYPGSWAE 655
Query: 1780 GLLPLRTNLA 1809
G L LR+++A
Sbjct: 656 GTLQLRSSMA 665
>ref|XP_002700261.1| PREDICTED: synaptotagmin-like 5 [Bos taurus].
Length = 848
Score = 177 bits (450), Expect = 2e-44
Identities = 111/325 (34%), Positives = 168/325 (51%), Gaps = 30/325 (9%)
Frame = +1
Query: 922 VQVRGSV--HFALHYEPGAAELRVHVIQCQGLXXXXXXXSDPYVKGYLLPDKQ--SKRKT 1089
V+V G + H + YE G + V + + +D YVK YLLPDK +KRKT
Sbjct: 522 VKVSGEILLHISYSYETGGLYIFVKNCRNLAIGDEKKQRTDAYVKSYLLPDKSRNNKRKT 581
Query: 1090 TVKKRNLNPIFNETLRYSVPQAELQGRVLSLSVWHRESLGRNIFLGEVEVPLDTGNWDS- 1266
++ NP FNETL+Y++ A+L+ R L LSVWH + GRN FLGEVE+P D+ N+++
Sbjct: 582 KIRT-GTNPEFNETLKYTISHAQLETRTLQLSVWHYDRFGRNSFLGEVEIPFDSWNFENP 640
Query: 1267 EPTWLPLQPRVPPSPD-ALPSRGLLSLSLKYIPAGSEGAGLPPSGE-------------- 1401
W LQP+V + D +L +G L++ L+YIP E +PP G+
Sbjct: 641 SDEWFVLQPKVECAADISLQYKGELTVMLRYIP--PEEKLMPPLGQFQGKKTFKRGKKKD 698
Query: 1402 --------LHFWVKEAQDLVPLRS-GSLDTYIQCSVLPDDXXXXXXXXXXXXXXLNPMFN 1554
L ++KEA++L ++S G+ D++++ +LPDD LNP +N
Sbjct: 699 PSIISGGILEVFIKEAKNLTAVKSGGTSDSFVKGYLLPDDSKATKHKTLVIKKSLNPQWN 758
Query: 1555 HTMVYDGFEPADLRQACAELSLWDHGTL-AXXXXXXXXXXXXXXXXXXXXVPWMDSTPEE 1731
HT V+ G P D++ C EL++WD + V WMDS EE
Sbjct: 759 HTFVFSGLHPQDIKHVCLELTIWDKEAFSSNIFLGGVRLNSGSGVSHGKNVDWMDSQGEE 818
Query: 1732 KQLWQTLLERPCEWVDGLLPLRTNL 1806
++LWQ + + P V+G+L LR ++
Sbjct: 819 QRLWQKMADNPGTPVEGVLMLRASM 843
>ref|XP_616807.4| PREDICTED: synaptotagmin-like 5, partial [Bos taurus].
Length = 714
Score = 177 bits (450), Expect = 2e-44
Identities = 111/325 (34%), Positives = 168/325 (51%), Gaps = 30/325 (9%)
Frame = +1
Query: 922 VQVRGSV--HFALHYEPGAAELRVHVIQCQGLXXXXXXXSDPYVKGYLLPDKQ--SKRKT 1089
V+V G + H + YE G + V + + +D YVK YLLPDK +KRKT
Sbjct: 388 VKVSGEILLHISYSYETGGLYIFVKNCRNLAIGDEKKQRTDAYVKSYLLPDKSRNNKRKT 447
Query: 1090 TVKKRNLNPIFNETLRYSVPQAELQGRVLSLSVWHRESLGRNIFLGEVEVPLDTGNWDS- 1266
++ NP FNETL+Y++ A+L+ R L LSVWH + GRN FLGEVE+P D+ N+++
Sbjct: 448 KIRT-GTNPEFNETLKYTISHAQLETRTLQLSVWHYDRFGRNSFLGEVEIPFDSWNFENP 506
Query: 1267 EPTWLPLQPRVPPSPD-ALPSRGLLSLSLKYIPAGSEGAGLPPSGE-------------- 1401
W LQP+V + D +L +G L++ L+YIP E +PP G+
Sbjct: 507 SDEWFVLQPKVECAADISLQYKGELTVMLRYIP--PEEKLMPPLGQFQGKKTFKRGKKKD 564
Query: 1402 --------LHFWVKEAQDLVPLRS-GSLDTYIQCSVLPDDXXXXXXXXXXXXXXLNPMFN 1554
L ++KEA++L ++S G+ D++++ +LPDD LNP +N
Sbjct: 565 PSIISGGILEVFIKEAKNLTAVKSGGTSDSFVKGYLLPDDSKATKHKTLVIKKSLNPQWN 624
Query: 1555 HTMVYDGFEPADLRQACAELSLWDHGTL-AXXXXXXXXXXXXXXXXXXXXVPWMDSTPEE 1731
HT V+ G P D++ C EL++WD + V WMDS EE
Sbjct: 625 HTFVFSGLHPQDIKHVCLELTIWDKEAFSSNIFLGGVRLNSGSGVSHGKNVDWMDSQGEE 684
Query: 1732 KQLWQTLLERPCEWVDGLLPLRTNL 1806
++LWQ + + P V+G+L LR ++
Sbjct: 685 QRLWQKMADNPGTPVEGVLMLRASM 709
>ref|XP_002683755.1| PREDICTED: synaptotagmin-like 3-like isoform 2 [Bos taurus].
Length = 544
Score = 135 bits (340), Expect = 1e-31
Identities = 102/311 (32%), Positives = 144/311 (46%), Gaps = 22/311 (7%)
Frame = +1
Query: 928 VRGSVHFALHYEPGAAELRVHVIQCQGLXXXXXXXS--DPYVKGYLLPDK--QSKRKTTV 1095
V G + FA+ Y L + + C+ L +PYVK YLLPD+ Q KRKT V
Sbjct: 239 VTGEIEFAIRYCLRTHSLEICIRACKNLAFGEERKKKCNPYVKTYLLPDRSSQGKRKTGV 298
Query: 1096 KKRNLNPIFNETLRYSVPQAELQGRVLSLSVWHRESLGRNIFLGEVEVPLDTGNWDSEP- 1272
+K + P F ETL+Y V A+L + L +SVWH L R +FLGEV VPL T WD E
Sbjct: 299 QKNTVEPTFQETLKYQVELAQLASQQLQVSVWHLGVLTRRVFLGEVIVPLAT--WDFEDR 356
Query: 1273 -----TWLPLQPRVPPSPDALP-SRGLLSLSLKYI-PAG-------SEGAGLPPS--GEL 1404
W PL+ + S D+LP + G L++ K + PAG EG G PS G+L
Sbjct: 357 ESQSFRWYPLRAKAEKSEDSLPTNNGELAVRAKLVLPAGPRELQEAPEGTGDEPSQNGQL 416
Query: 1405 HFWVKEAQDLVPLRSGSLDTYIQ-CSVLPDDXXXXXXXXXXXXXXLNPMFNHTMVYDGFE 1581
V A++L G+L+++++ C LPD P + H+ ++ G
Sbjct: 417 CLVVLGAKNLPVRSDGTLNSFVKGCLTLPDQQRLRLKSPVLKKQAC-PQWKHSFIFKGVT 475
Query: 1582 PADLRQACAELSLWDHGTLAXXXXXXXXXXXXXXXXXXXXVPWMDSTPEEKQLWQTLLER 1761
P+ LRQ+ EL++WD T ++ + K WQ +L
Sbjct: 476 PSQLRQSSLELTIWDQATFGVNDRFLGGARLGLKEDLPGGA---HTSSQAKLQWQKVLSS 532
Query: 1762 PCEWVDGLLPL 1794
P W D L L
Sbjct: 533 PNLWTDMTLIL 543
>ref|XP_002683754.1| PREDICTED: synaptotagmin-like 3-like isoform 1 [Bos taurus].
Length = 611
Score = 135 bits (340), Expect = 1e-31
Identities = 102/311 (32%), Positives = 144/311 (46%), Gaps = 22/311 (7%)
Frame = +1
Query: 928 VRGSVHFALHYEPGAAELRVHVIQCQGLXXXXXXXS--DPYVKGYLLPDK--QSKRKTTV 1095
V G + FA+ Y L + + C+ L +PYVK YLLPD+ Q KRKT V
Sbjct: 306 VTGEIEFAIRYCLRTHSLEICIRACKNLAFGEERKKKCNPYVKTYLLPDRSSQGKRKTGV 365
Query: 1096 KKRNLNPIFNETLRYSVPQAELQGRVLSLSVWHRESLGRNIFLGEVEVPLDTGNWDSEP- 1272
+K + P F ETL+Y V A+L + L +SVWH L R +FLGEV VPL T WD E
Sbjct: 366 QKNTVEPTFQETLKYQVELAQLASQQLQVSVWHLGVLTRRVFLGEVIVPLAT--WDFEDR 423
Query: 1273 -----TWLPLQPRVPPSPDALP-SRGLLSLSLKYI-PAG-------SEGAGLPPS--GEL 1404
W PL+ + S D+LP + G L++ K + PAG EG G PS G+L
Sbjct: 424 ESQSFRWYPLRAKAEKSEDSLPTNNGELAVRAKLVLPAGPRELQEAPEGTGDEPSQNGQL 483
Query: 1405 HFWVKEAQDLVPLRSGSLDTYIQ-CSVLPDDXXXXXXXXXXXXXXLNPMFNHTMVYDGFE 1581
V A++L G+L+++++ C LPD P + H+ ++ G
Sbjct: 484 CLVVLGAKNLPVRSDGTLNSFVKGCLTLPDQQRLRLKSPVLKKQAC-PQWKHSFIFKGVT 542
Query: 1582 PADLRQACAELSLWDHGTLAXXXXXXXXXXXXXXXXXXXXVPWMDSTPEEKQLWQTLLER 1761
P+ LRQ+ EL++WD T ++ + K WQ +L
Sbjct: 543 PSQLRQSSLELTIWDQATFGVNDRFLGGARLGLKEDLPGGA---HTSSQAKLQWQKVLSS 599
Query: 1762 PCEWVDGLLPL 1794
P W D L L
Sbjct: 600 PNLWTDMTLIL 610
>ref|XP_869170.3| PREDICTED: synaptotagmin-like 3 isoform 2 [Bos taurus].
Length = 544
Score = 135 bits (340), Expect = 1e-31
Identities = 102/311 (32%), Positives = 144/311 (46%), Gaps = 22/311 (7%)
Frame = +1
Query: 928 VRGSVHFALHYEPGAAELRVHVIQCQGLXXXXXXXS--DPYVKGYLLPDK--QSKRKTTV 1095
V G + FA+ Y L + + C+ L +PYVK YLLPD+ Q KRKT V
Sbjct: 239 VTGEIEFAIRYCLRTHSLEICIRACKNLAFGEERKKKCNPYVKTYLLPDRSSQGKRKTGV 298
Query: 1096 KKRNLNPIFNETLRYSVPQAELQGRVLSLSVWHRESLGRNIFLGEVEVPLDTGNWDSEP- 1272
+K + P F ETL+Y V A+L + L +SVWH L R +FLGEV VPL T WD E
Sbjct: 299 QKNTVEPTFQETLKYQVELAQLASQQLQVSVWHLGVLTRRVFLGEVIVPLAT--WDFEDR 356
Query: 1273 -----TWLPLQPRVPPSPDALP-SRGLLSLSLKYI-PAG-------SEGAGLPPS--GEL 1404
W PL+ + S D+LP + G L++ K + PAG EG G PS G+L
Sbjct: 357 ESQSFRWYPLRAKAEKSEDSLPTNNGELAVRAKLVLPAGPRELQEAPEGTGDEPSQNGQL 416
Query: 1405 HFWVKEAQDLVPLRSGSLDTYIQ-CSVLPDDXXXXXXXXXXXXXXLNPMFNHTMVYDGFE 1581
V A++L G+L+++++ C LPD P + H+ ++ G
Sbjct: 417 CLVVLGAKNLPVRSDGTLNSFVKGCLTLPDQQRLRLKSPVLKKQAC-PQWKHSFIFKGVT 475
Query: 1582 PADLRQACAELSLWDHGTLAXXXXXXXXXXXXXXXXXXXXVPWMDSTPEEKQLWQTLLER 1761
P+ LRQ+ EL++WD T ++ + K WQ +L
Sbjct: 476 PSQLRQSSLELTIWDQATFGVNDRFLGGARLGLKEDLPGGA---HTSSQAKLQWQKVLSS 532
Query: 1762 PCEWVDGLLPL 1794
P W D L L
Sbjct: 533 PNLWTDMTLIL 543
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.315 0.135 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 68,943,556
Number of extensions: 2106793
Number of successful extensions: 15906
Number of sequences better than 1.0e-05: 56
Number of HSP's gapped: 14895
Number of HSP's successfully gapped: 76
Length of query: 647
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 538
Effective length of database: 14,074,782
Effective search space: 7572232716
Effective search space used: 7572232716
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA LVRM1_0039_H04
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LVRM1_0039_H04
(1943 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001180237.1| synaptotagmin-like protein 1 isoform 1 [Homo... 759 0.0
Alignment gi|NP_116261.1| synaptotagmin-like protein 1 isoform 2 [Homo sa... 732 0.0
Alignment gi|NP_115755.2| synaptotagmin-like protein 2 isoform b [Homo sa... 246 4e-65
Alignment gi|NP_116561.1| synaptotagmin-like protein 2 isoform a [Homo sa... 246 4e-65
Alignment gi|NP_001156425.1| synaptotagmin-like protein 2 isoform i [Homo... 246 4e-65
Alignment gi|NP_001156424.1| synaptotagmin-like protein 2 isoform h [Homo... 246 4e-65
Alignment gi|NP_001156423.1| synaptotagmin-like protein 2 isoform g [Homo... 246 4e-65
Alignment gi|NP_996813.1| synaptotagmin-like protein 2 isoform f [Homo sa... 246 4e-65
Alignment gi|NP_996812.1| synaptotagmin-like protein 2 isoform e [Homo sa... 246 4e-65
Alignment gi|NP_996811.1| synaptotagmin-like protein 2 isoform d [Homo sa... 246 4e-65
>ref|NP_001180237.1| synaptotagmin-like protein 1 isoform 1 [Homo sapiens].
Length = 562
Score = 759 bits (1961), Expect = 0.0
Identities = 392/565 (69%), Positives = 418/565 (73%)
Frame = +1
Query: 124 MPQRGHPSQEGLRVLPGLLMAHEPEPEADGLLDLSFLTEEEQEAIAEVLKRDAHLRQLEE 303
MPQRGHPSQEGL LP L MAH P+PE +GLLDLSFLTEEEQEAIA VL+RDA LRQLEE
Sbjct: 1 MPQRGHPSQEGLWALPSLPMAHGPKPETEGLLDLSFLTEEEQEAIAGVLQRDARLRQLEE 60
Query: 304 GRVRKLRASLEDPGQLKILTGDWFQEARSQRHHHTHLGSDLVRASIRRKKGSRGDQARGS 483
GRV KLRAS+ DPGQLKILTGDWFQEARSQRHH+ H GSDLVRAS+RRKK +RGDQA G
Sbjct: 61 GRVSKLRASVADPGQLKILTGDWFQEARSQRHHNAHFGSDLVRASMRRKKSTRGDQAPGH 120
Query: 484 NGXXXXXXXXXXXXXXPRLPIDKAPQESLSEAEGPDFPSPYVPTKASDNXXXXXXXXXXX 663
+ PRL ID+APQE L E EGPDFPSP VP KASD
Sbjct: 121 DREAEAAVKEKEEGPEPRLTIDEAPQERLRETEGPDFPSPSVPLKASDPEEASQAQEDPG 180
Query: 664 XXDVQVXXXXXXXXXXXXXSGAEEEPQPRPAQTQEASEILENGEEAPGPDPXXXXXXXXX 843
D QV SG E+EP+P+ AQT+ AS+ILENGEEAPGPDP
Sbjct: 181 QGDQQVCAEEADPELEPA-SGGEQEPRPQQAQTKAASQILENGEEAPGPDPSLDRMLSSS 239
Query: 844 XXXXXXXXXXXXXXXXXXXGEAEAAAVQVRGSVHFALHYEPGAAELRVHVIQCQGLXXXX 1023
G+AEA VQVRGSVHFALHYEPGAAELRVHVIQCQGL
Sbjct: 240 SSVSSLNSSTLSGSQMSLSGDAEA--VQVRGSVHFALHYEPGAAELRVHVIQCQGLAAAR 297
Query: 1024 XXXSDPYVKGYLLPDKQSKRKTTVKKRNLNPIFNETLRYSVPQAELQGRVLSLSVWHRES 1203
SDPYVK YLLPDKQSKRKT VKKRNLNP+FNETLRYSVPQAELQGRVLSLSVWHRES
Sbjct: 298 RRRSDPYVKSYLLPDKQSKRKTAVKKRNLNPVFNETLRYSVPQAELQGRVLSLSVWHRES 357
Query: 1204 LGRNIFLGEVEVPLDTGNWDSEPTWLPLQPRVPPSPDALPSRGLLSLSLKYIPAGSEGAG 1383
LGRNIFLGEVEVPLDT +W SEPTWLPLQPRVPPSPD LPSRGLL+LSLKY+PAGSEGAG
Sbjct: 358 LGRNIFLGEVEVPLDTWDWGSEPTWLPLQPRVPPSPDDLPSRGLLALSLKYVPAGSEGAG 417
Query: 1384 LPPSGELHFWVKEAQDLVPLRSGSLDTYIQCSVLPDDXXXXXXXXXXXXXXLNPMFNHTM 1563
LPPSGELHFWVKEA+DL+PLR+GSLDTY+QC VLPDD L+P+FNHTM
Sbjct: 418 LPPSGELHFWVKEARDLLPLRAGSLDTYVQCFVLPDDSQASRQRTRVVRRSLSPVFNHTM 477
Query: 1564 VYDGFEPADLRQACAELSLWDHGTLAXXXXXXXXXXXXXXXXXXXXVPWMDSTPEEKQLW 1743
VYDGF PADLRQACAELSLWDHG LA VPWMDSTPEEKQLW
Sbjct: 478 VYDGFGPADLRQACAELSLWDHGALANRQLGGTRLSLGTGSSYGLQVPWMDSTPEEKQLW 537
Query: 1744 QTLLERPCEWVDGLLPLRTNLAPRT 1818
Q LLE+PCEWVDGLLPLRTNLAPRT
Sbjct: 538 QALLEQPCEWVDGLLPLRTNLAPRT 562
>ref|NP_116261.1| synaptotagmin-like protein 1 isoform 2 [Homo sapiens].
Length = 550
Score = 732 bits (1889), Expect = 0.0
Identities = 380/565 (67%), Positives = 412/565 (72%)
Frame = +1
Query: 124 MPQRGHPSQEGLRVLPGLLMAHEPEPEADGLLDLSFLTEEEQEAIAEVLKRDAHLRQLEE 303
MPQRGHPSQEGL LP L MAH P+PE +GLLDLSFLTEEEQEAIA VL+RDA LRQLEE
Sbjct: 1 MPQRGHPSQEGLWALPSLPMAHGPKPETEGLLDLSFLTEEEQEAIAGVLQRDARLRQLEE 60
Query: 304 GRVRKLRASLEDPGQLKILTGDWFQEARSQRHHHTHLGSDLVRASIRRKKGSRGDQARGS 483
GRV KLRAS+ DPGQLKILTGDWFQEARSQRHH+ H GSDLVRAS+RRKK +RGDQA G
Sbjct: 61 GRVSKLRASVADPGQLKILTGDWFQEARSQRHHNAHFGSDLVRASMRRKKSTRGDQAPGH 120
Query: 484 NGXXXXXXXXXXXXXXPRLPIDKAPQESLSEAEGPDFPSPYVPTKASDNXXXXXXXXXXX 663
+ PRL ID+APQE L E E D P ++A ++
Sbjct: 121 DREAEAAVKEKEEGPEPRLTIDEAPQERLRETEASD---PEEASQAQEDPGQGDQQVCAE 177
Query: 664 XXDVQVXXXXXXXXXXXXXSGAEEEPQPRPAQTQEASEILENGEEAPGPDPXXXXXXXXX 843
D ++ SG E+EP+P+ AQT+ AS+ILENGEEAPGPDP
Sbjct: 178 EADPELEPA----------SGGEQEPRPQQAQTKAASQILENGEEAPGPDPSLDRMLSSS 227
Query: 844 XXXXXXXXXXXXXXXXXXXGEAEAAAVQVRGSVHFALHYEPGAAELRVHVIQCQGLXXXX 1023
G+AEA VQVRGSVHFALHYEPGAAELRVHVIQCQGL
Sbjct: 228 SSVSSLNSSTLSGSQMSLSGDAEA--VQVRGSVHFALHYEPGAAELRVHVIQCQGLAAAR 285
Query: 1024 XXXSDPYVKGYLLPDKQSKRKTTVKKRNLNPIFNETLRYSVPQAELQGRVLSLSVWHRES 1203
SDPYVK YLLPDKQSKRKT VKKRNLNP+FNETLRYSVPQAELQGRVLSLSVWHRES
Sbjct: 286 RRRSDPYVKSYLLPDKQSKRKTAVKKRNLNPVFNETLRYSVPQAELQGRVLSLSVWHRES 345
Query: 1204 LGRNIFLGEVEVPLDTGNWDSEPTWLPLQPRVPPSPDALPSRGLLSLSLKYIPAGSEGAG 1383
LGRNIFLGEVEVPLDT +W SEPTWLPLQPRVPPSPD LPSRGLL+LSLKY+PAGSEGAG
Sbjct: 346 LGRNIFLGEVEVPLDTWDWGSEPTWLPLQPRVPPSPDDLPSRGLLALSLKYVPAGSEGAG 405
Query: 1384 LPPSGELHFWVKEAQDLVPLRSGSLDTYIQCSVLPDDXXXXXXXXXXXXXXLNPMFNHTM 1563
LPPSGELHFWVKEA+DL+PLR+GSLDTY+QC VLPDD L+P+FNHTM
Sbjct: 406 LPPSGELHFWVKEARDLLPLRAGSLDTYVQCFVLPDDSQASRQRTRVVRRSLSPVFNHTM 465
Query: 1564 VYDGFEPADLRQACAELSLWDHGTLAXXXXXXXXXXXXXXXXXXXXVPWMDSTPEEKQLW 1743
VYDGF PADLRQACAELSLWDHG LA VPWMDSTPEEKQLW
Sbjct: 466 VYDGFGPADLRQACAELSLWDHGALANRQLGGTRLSLGTGSSYGLQVPWMDSTPEEKQLW 525
Query: 1744 QTLLERPCEWVDGLLPLRTNLAPRT 1818
Q LLE+PCEWVDGLLPLRTNLAPRT
Sbjct: 526 QALLEQPCEWVDGLLPLRTNLAPRT 550
>ref|NP_115755.2| synaptotagmin-like protein 2 isoform b [Homo sapiens].
Length = 376
Score = 246 bits (629), Expect = 4e-65
Identities = 124/300 (41%), Positives = 173/300 (57%), Gaps = 8/300 (2%)
Frame = +1
Query: 922 VQVRGSVHFALHYEPGAAELRVHVIQCQGLXXXXXXX--SDPYVKGYLLPDK--QSKRKT 1089
++V+G++ FA+ Y EL V V QC+ L SDPYVK YLLPDK K+KT
Sbjct: 68 LEVKGNIQFAIEYVESLKELHVFVAQCKDLAAADVKKQRSDPYVKAYLLPDKGKMGKKKT 127
Query: 1090 TVKKRNLNPIFNETLRYSVPQAELQGRVLSLSVWHRESLGRNIFLGEVEVPLDTGNWDSE 1269
V K+ LNP++NE LRY + + L+ + L+LS+WHR++ RN FLGEVE+ L+T +WD++
Sbjct: 128 LVVKKTLNPVYNEILRYKIEKQILKTQKLNLSIWHRDTFKRNSFLGEVELDLETWDWDNK 187
Query: 1270 PT----WLPLQPRVPPSPDALPSRGLLSLSLKYIPAGSEGAGLPPSGELHFWVKEAQDLV 1437
W PL+ + P +RG + L+L+Y+P G LP +GE+H WVKE DL
Sbjct: 188 QNKQLRWYPLKRKTAPVALEAENRGEMKLALQYVPEPVPGKKLPTTGEVHIWVKECLDLP 247
Query: 1438 PLRSGSLDTYIQCSVLPDDXXXXXXXXXXXXXXLNPMFNHTMVYDGFEPADLRQACAELS 1617
LR L+++++C++LPD NP+FNHTMVYDGF P DL +AC EL+
Sbjct: 248 LLRGSHLNSFVKCTILPDTSRKSRQKTRAVGKTTNPIFNHTMVYDGFRPEDLMEACVELT 307
Query: 1618 LWDHGTLAXXXXXXXXXXXXXXXXXXXXVPWMDSTPEEKQLWQTLLERPCEWVDGLLPLR 1797
+WDH L V WMDST EE LW+ ++ P W++ LPLR
Sbjct: 308 VWDHYKLTNQFLGGLRIGFGTGKSYGTEVDWMDSTSEEVALWEKMVNSPNTWIEATLPLR 367
>ref|NP_116561.1| synaptotagmin-like protein 2 isoform a [Homo sapiens].
Length = 910
Score = 246 bits (629), Expect = 4e-65
Identities = 124/300 (41%), Positives = 173/300 (57%), Gaps = 8/300 (2%)
Frame = +1
Query: 922 VQVRGSVHFALHYEPGAAELRVHVIQCQGLXXXXXXX--SDPYVKGYLLPDK--QSKRKT 1089
++V+G++ FA+ Y EL V V QC+ L SDPYVK YLLPDK K+KT
Sbjct: 602 LEVKGNIQFAIEYVESLKELHVFVAQCKDLAAADVKKQRSDPYVKAYLLPDKGKMGKKKT 661
Query: 1090 TVKKRNLNPIFNETLRYSVPQAELQGRVLSLSVWHRESLGRNIFLGEVEVPLDTGNWDSE 1269
V K+ LNP++NE LRY + + L+ + L+LS+WHR++ RN FLGEVE+ L+T +WD++
Sbjct: 662 LVVKKTLNPVYNEILRYKIEKQILKTQKLNLSIWHRDTFKRNSFLGEVELDLETWDWDNK 721
Query: 1270 PT----WLPLQPRVPPSPDALPSRGLLSLSLKYIPAGSEGAGLPPSGELHFWVKEAQDLV 1437
W PL+ + P +RG + L+L+Y+P G LP +GE+H WVKE DL
Sbjct: 722 QNKQLRWYPLKRKTAPVALEAENRGEMKLALQYVPEPVPGKKLPTTGEVHIWVKECLDLP 781
Query: 1438 PLRSGSLDTYIQCSVLPDDXXXXXXXXXXXXXXLNPMFNHTMVYDGFEPADLRQACAELS 1617
LR L+++++C++LPD NP+FNHTMVYDGF P DL +AC EL+
Sbjct: 782 LLRGSHLNSFVKCTILPDTSRKSRQKTRAVGKTTNPIFNHTMVYDGFRPEDLMEACVELT 841
Query: 1618 LWDHGTLAXXXXXXXXXXXXXXXXXXXXVPWMDSTPEEKQLWQTLLERPCEWVDGLLPLR 1797
+WDH L V WMDST EE LW+ ++ P W++ LPLR
Sbjct: 842 VWDHYKLTNQFLGGLRIGFGTGKSYGTEVDWMDSTSEEVALWEKMVNSPNTWIEATLPLR 901
Score = 90.1 bits (222), Expect = 7e-18
Identities = 43/80 (53%), Positives = 62/80 (77%)
Frame = +1
Query: 214 LLDLSFLTEEEQEAIAEVLKRDAHLRQLEEGRVRKLRASLEDPGQLKILTGDWFQEARSQ 393
++DLSFLTEEEQEAI +VL+RDA L++ EE RVR L ++D QLK ++G WF EA+++
Sbjct: 1 MIDLSFLTEEEQEAIMKVLQRDAALKRAEEERVRHLPEKIKDDQQLKNMSGQWFYEAKAK 60
Query: 394 RHHHTHLGSDLVRASIRRKK 453
RH G+D++RAS+R+K+
Sbjct: 61 RHRDKIHGADIIRASMRKKR 80
>ref|NP_001156425.1| synaptotagmin-like protein 2 isoform i [Homo sapiens].
Length = 935
Score = 246 bits (629), Expect = 4e-65
Identities = 124/300 (41%), Positives = 173/300 (57%), Gaps = 8/300 (2%)
Frame = +1
Query: 922 VQVRGSVHFALHYEPGAAELRVHVIQCQGLXXXXXXX--SDPYVKGYLLPDK--QSKRKT 1089
++V+G++ FA+ Y EL V V QC+ L SDPYVK YLLPDK K+KT
Sbjct: 627 LEVKGNIQFAIEYVESLKELHVFVAQCKDLAAADVKKQRSDPYVKAYLLPDKGKMGKKKT 686
Query: 1090 TVKKRNLNPIFNETLRYSVPQAELQGRVLSLSVWHRESLGRNIFLGEVEVPLDTGNWDSE 1269
V K+ LNP++NE LRY + + L+ + L+LS+WHR++ RN FLGEVE+ L+T +WD++
Sbjct: 687 LVVKKTLNPVYNEILRYKIEKQILKTQKLNLSIWHRDTFKRNSFLGEVELDLETWDWDNK 746
Query: 1270 PT----WLPLQPRVPPSPDALPSRGLLSLSLKYIPAGSEGAGLPPSGELHFWVKEAQDLV 1437
W PL+ + P +RG + L+L+Y+P G LP +GE+H WVKE DL
Sbjct: 747 QNKQLRWYPLKRKTAPVALEAENRGEMKLALQYVPEPVPGKKLPTTGEVHIWVKECLDLP 806
Query: 1438 PLRSGSLDTYIQCSVLPDDXXXXXXXXXXXXXXLNPMFNHTMVYDGFEPADLRQACAELS 1617
LR L+++++C++LPD NP+FNHTMVYDGF P DL +AC EL+
Sbjct: 807 LLRGSHLNSFVKCTILPDTSRKSRQKTRAVGKTTNPIFNHTMVYDGFRPEDLMEACVELT 866
Query: 1618 LWDHGTLAXXXXXXXXXXXXXXXXXXXXVPWMDSTPEEKQLWQTLLERPCEWVDGLLPLR 1797
+WDH L V WMDST EE LW+ ++ P W++ LPLR
Sbjct: 867 VWDHYKLTNQFLGGLRIGFGTGKSYGTEVDWMDSTSEEVALWEKMVNSPNTWIEATLPLR 926
Score = 90.1 bits (222), Expect = 7e-18
Identities = 43/80 (53%), Positives = 62/80 (77%)
Frame = +1
Query: 214 LLDLSFLTEEEQEAIAEVLKRDAHLRQLEEGRVRKLRASLEDPGQLKILTGDWFQEARSQ 393
++DLSFLTEEEQEAI +VL+RDA L++ EE RVR L ++D QLK ++G WF EA+++
Sbjct: 1 MIDLSFLTEEEQEAIMKVLQRDAALKRAEEERVRHLPEKIKDDQQLKNMSGQWFYEAKAK 60
Query: 394 RHHHTHLGSDLVRASIRRKK 453
RH G+D++RAS+R+K+
Sbjct: 61 RHRDKIHGADIIRASMRKKR 80
>ref|NP_001156424.1| synaptotagmin-like protein 2 isoform h [Homo sapiens].
Length = 336
Score = 246 bits (629), Expect = 4e-65
Identities = 124/300 (41%), Positives = 173/300 (57%), Gaps = 8/300 (2%)
Frame = +1
Query: 922 VQVRGSVHFALHYEPGAAELRVHVIQCQGLXXXXXXX--SDPYVKGYLLPDK--QSKRKT 1089
++V+G++ FA+ Y EL V V QC+ L SDPYVK YLLPDK K+KT
Sbjct: 28 LEVKGNIQFAIEYVESLKELHVFVAQCKDLAAADVKKQRSDPYVKAYLLPDKGKMGKKKT 87
Query: 1090 TVKKRNLNPIFNETLRYSVPQAELQGRVLSLSVWHRESLGRNIFLGEVEVPLDTGNWDSE 1269
V K+ LNP++NE LRY + + L+ + L+LS+WHR++ RN FLGEVE+ L+T +WD++
Sbjct: 88 LVVKKTLNPVYNEILRYKIEKQILKTQKLNLSIWHRDTFKRNSFLGEVELDLETWDWDNK 147
Query: 1270 PT----WLPLQPRVPPSPDALPSRGLLSLSLKYIPAGSEGAGLPPSGELHFWVKEAQDLV 1437
W PL+ + P +RG + L+L+Y+P G LP +GE+H WVKE DL
Sbjct: 148 QNKQLRWYPLKRKTAPVALEAENRGEMKLALQYVPEPVPGKKLPTTGEVHIWVKECLDLP 207
Query: 1438 PLRSGSLDTYIQCSVLPDDXXXXXXXXXXXXXXLNPMFNHTMVYDGFEPADLRQACAELS 1617
LR L+++++C++LPD NP+FNHTMVYDGF P DL +AC EL+
Sbjct: 208 LLRGSHLNSFVKCTILPDTSRKSRQKTRAVGKTTNPIFNHTMVYDGFRPEDLMEACVELT 267
Query: 1618 LWDHGTLAXXXXXXXXXXXXXXXXXXXXVPWMDSTPEEKQLWQTLLERPCEWVDGLLPLR 1797
+WDH L V WMDST EE LW+ ++ P W++ LPLR
Sbjct: 268 VWDHYKLTNQFLGGLRIGFGTGKSYGTEVDWMDSTSEEVALWEKMVNSPNTWIEATLPLR 327
>ref|NP_001156423.1| synaptotagmin-like protein 2 isoform g [Homo sapiens].
Length = 934
Score = 246 bits (629), Expect = 4e-65
Identities = 124/300 (41%), Positives = 173/300 (57%), Gaps = 8/300 (2%)
Frame = +1
Query: 922 VQVRGSVHFALHYEPGAAELRVHVIQCQGLXXXXXXX--SDPYVKGYLLPDK--QSKRKT 1089
++V+G++ FA+ Y EL V V QC+ L SDPYVK YLLPDK K+KT
Sbjct: 626 LEVKGNIQFAIEYVESLKELHVFVAQCKDLAAADVKKQRSDPYVKAYLLPDKGKMGKKKT 685
Query: 1090 TVKKRNLNPIFNETLRYSVPQAELQGRVLSLSVWHRESLGRNIFLGEVEVPLDTGNWDSE 1269
V K+ LNP++NE LRY + + L+ + L+LS+WHR++ RN FLGEVE+ L+T +WD++
Sbjct: 686 LVVKKTLNPVYNEILRYKIEKQILKTQKLNLSIWHRDTFKRNSFLGEVELDLETWDWDNK 745
Query: 1270 PT----WLPLQPRVPPSPDALPSRGLLSLSLKYIPAGSEGAGLPPSGELHFWVKEAQDLV 1437
W PL+ + P +RG + L+L+Y+P G LP +GE+H WVKE DL
Sbjct: 746 QNKQLRWYPLKRKTAPVALEAENRGEMKLALQYVPEPVPGKKLPTTGEVHIWVKECLDLP 805
Query: 1438 PLRSGSLDTYIQCSVLPDDXXXXXXXXXXXXXXLNPMFNHTMVYDGFEPADLRQACAELS 1617
LR L+++++C++LPD NP+FNHTMVYDGF P DL +AC EL+
Sbjct: 806 LLRGSHLNSFVKCTILPDTSRKSRQKTRAVGKTTNPIFNHTMVYDGFRPEDLMEACVELT 865
Query: 1618 LWDHGTLAXXXXXXXXXXXXXXXXXXXXVPWMDSTPEEKQLWQTLLERPCEWVDGLLPLR 1797
+WDH L V WMDST EE LW+ ++ P W++ LPLR
Sbjct: 866 VWDHYKLTNQFLGGLRIGFGTGKSYGTEVDWMDSTSEEVALWEKMVNSPNTWIEATLPLR 925
Score = 90.1 bits (222), Expect = 7e-18
Identities = 43/80 (53%), Positives = 62/80 (77%)
Frame = +1
Query: 214 LLDLSFLTEEEQEAIAEVLKRDAHLRQLEEGRVRKLRASLEDPGQLKILTGDWFQEARSQ 393
++DLSFLTEEEQEAI +VL+RDA L++ EE RVR L ++D QLK ++G WF EA+++
Sbjct: 1 MIDLSFLTEEEQEAIMKVLQRDAALKRAEEERVRHLPEKIKDDQQLKNMSGQWFYEAKAK 60
Query: 394 RHHHTHLGSDLVRASIRRKK 453
RH G+D++RAS+R+K+
Sbjct: 61 RHRDKIHGADIIRASMRKKR 80
>ref|NP_996813.1| synaptotagmin-like protein 2 isoform f [Homo sapiens].
Length = 365
Score = 246 bits (629), Expect = 4e-65
Identities = 124/300 (41%), Positives = 173/300 (57%), Gaps = 8/300 (2%)
Frame = +1
Query: 922 VQVRGSVHFALHYEPGAAELRVHVIQCQGLXXXXXXX--SDPYVKGYLLPDK--QSKRKT 1089
++V+G++ FA+ Y EL V V QC+ L SDPYVK YLLPDK K+KT
Sbjct: 57 LEVKGNIQFAIEYVESLKELHVFVAQCKDLAAADVKKQRSDPYVKAYLLPDKGKMGKKKT 116
Query: 1090 TVKKRNLNPIFNETLRYSVPQAELQGRVLSLSVWHRESLGRNIFLGEVEVPLDTGNWDSE 1269
V K+ LNP++NE LRY + + L+ + L+LS+WHR++ RN FLGEVE+ L+T +WD++
Sbjct: 117 LVVKKTLNPVYNEILRYKIEKQILKTQKLNLSIWHRDTFKRNSFLGEVELDLETWDWDNK 176
Query: 1270 PT----WLPLQPRVPPSPDALPSRGLLSLSLKYIPAGSEGAGLPPSGELHFWVKEAQDLV 1437
W PL+ + P +RG + L+L+Y+P G LP +GE+H WVKE DL
Sbjct: 177 QNKQLRWYPLKRKTAPVALEAENRGEMKLALQYVPEPVPGKKLPTTGEVHIWVKECLDLP 236
Query: 1438 PLRSGSLDTYIQCSVLPDDXXXXXXXXXXXXXXLNPMFNHTMVYDGFEPADLRQACAELS 1617
LR L+++++C++LPD NP+FNHTMVYDGF P DL +AC EL+
Sbjct: 237 LLRGSHLNSFVKCTILPDTSRKSRQKTRAVGKTTNPIFNHTMVYDGFRPEDLMEACVELT 296
Query: 1618 LWDHGTLAXXXXXXXXXXXXXXXXXXXXVPWMDSTPEEKQLWQTLLERPCEWVDGLLPLR 1797
+WDH L V WMDST EE LW+ ++ P W++ LPLR
Sbjct: 297 VWDHYKLTNQFLGGLRIGFGTGKSYGTEVDWMDSTSEEVALWEKMVNSPNTWIEATLPLR 356
>ref|NP_996812.1| synaptotagmin-like protein 2 isoform e [Homo sapiens].
Length = 376
Score = 246 bits (629), Expect = 4e-65
Identities = 124/300 (41%), Positives = 173/300 (57%), Gaps = 8/300 (2%)
Frame = +1
Query: 922 VQVRGSVHFALHYEPGAAELRVHVIQCQGLXXXXXXX--SDPYVKGYLLPDK--QSKRKT 1089
++V+G++ FA+ Y EL V V QC+ L SDPYVK YLLPDK K+KT
Sbjct: 68 LEVKGNIQFAIEYVESLKELHVFVAQCKDLAAADVKKQRSDPYVKAYLLPDKGKMGKKKT 127
Query: 1090 TVKKRNLNPIFNETLRYSVPQAELQGRVLSLSVWHRESLGRNIFLGEVEVPLDTGNWDSE 1269
V K+ LNP++NE LRY + + L+ + L+LS+WHR++ RN FLGEVE+ L+T +WD++
Sbjct: 128 LVVKKTLNPVYNEILRYKIEKQILKTQKLNLSIWHRDTFKRNSFLGEVELDLETWDWDNK 187
Query: 1270 PT----WLPLQPRVPPSPDALPSRGLLSLSLKYIPAGSEGAGLPPSGELHFWVKEAQDLV 1437
W PL+ + P +RG + L+L+Y+P G LP +GE+H WVKE DL
Sbjct: 188 QNKQLRWYPLKRKTAPVALEAENRGEMKLALQYVPEPVPGKKLPTTGEVHIWVKECLDLP 247
Query: 1438 PLRSGSLDTYIQCSVLPDDXXXXXXXXXXXXXXLNPMFNHTMVYDGFEPADLRQACAELS 1617
LR L+++++C++LPD NP+FNHTMVYDGF P DL +AC EL+
Sbjct: 248 LLRGSHLNSFVKCTILPDTSRKSRQKTRAVGKTTNPIFNHTMVYDGFRPEDLMEACVELT 307
Query: 1618 LWDHGTLAXXXXXXXXXXXXXXXXXXXXVPWMDSTPEEKQLWQTLLERPCEWVDGLLPLR 1797
+WDH L V WMDST EE LW+ ++ P W++ LPLR
Sbjct: 308 VWDHYKLTNQFLGGLRIGFGTGKSYGTEVDWMDSTSEEVALWEKMVNSPNTWIEATLPLR 367
>ref|NP_996811.1| synaptotagmin-like protein 2 isoform d [Homo sapiens].
Length = 1256
Score = 246 bits (629), Expect = 4e-65
Identities = 124/300 (41%), Positives = 173/300 (57%), Gaps = 8/300 (2%)
Frame = +1
Query: 922 VQVRGSVHFALHYEPGAAELRVHVIQCQGLXXXXXXX--SDPYVKGYLLPDK--QSKRKT 1089
++V+G++ FA+ Y EL V V QC+ L SDPYVK YLLPDK K+KT
Sbjct: 948 LEVKGNIQFAIEYVESLKELHVFVAQCKDLAAADVKKQRSDPYVKAYLLPDKGKMGKKKT 1007
Query: 1090 TVKKRNLNPIFNETLRYSVPQAELQGRVLSLSVWHRESLGRNIFLGEVEVPLDTGNWDSE 1269
V K+ LNP++NE LRY + + L+ + L+LS+WHR++ RN FLGEVE+ L+T +WD++
Sbjct: 1008 LVVKKTLNPVYNEILRYKIEKQILKTQKLNLSIWHRDTFKRNSFLGEVELDLETWDWDNK 1067
Query: 1270 PT----WLPLQPRVPPSPDALPSRGLLSLSLKYIPAGSEGAGLPPSGELHFWVKEAQDLV 1437
W PL+ + P +RG + L+L+Y+P G LP +GE+H WVKE DL
Sbjct: 1068 QNKQLRWYPLKRKTAPVALEAENRGEMKLALQYVPEPVPGKKLPTTGEVHIWVKECLDLP 1127
Query: 1438 PLRSGSLDTYIQCSVLPDDXXXXXXXXXXXXXXLNPMFNHTMVYDGFEPADLRQACAELS 1617
LR L+++++C++LPD NP+FNHTMVYDGF P DL +AC EL+
Sbjct: 1128 LLRGSHLNSFVKCTILPDTSRKSRQKTRAVGKTTNPIFNHTMVYDGFRPEDLMEACVELT 1187
Query: 1618 LWDHGTLAXXXXXXXXXXXXXXXXXXXXVPWMDSTPEEKQLWQTLLERPCEWVDGLLPLR 1797
+WDH L V WMDST EE LW+ ++ P W++ LPLR
Sbjct: 1188 VWDHYKLTNQFLGGLRIGFGTGKSYGTEVDWMDSTSEEVALWEKMVNSPNTWIEATLPLR 1247
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.315 0.135 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 69,848,557
Number of extensions: 2050189
Number of successful extensions: 15018
Number of sequences better than 1.0e-05: 66
Number of HSP's gapped: 13958
Number of HSP's successfully gapped: 87
Length of query: 647
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 538
Effective length of database: 14,704,088
Effective search space: 7910799344
Effective search space used: 7910799344
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LVRM1_0039_H04
(1943 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_113570.2| synaptotagmin-like protein 1 [Mus musculus]. 707 0.0
Alignment gi|XP_003086438.1| PREDICTED: synaptotagmin-like protein 1-like... 704 0.0
Alignment gi|XP_003086439.1| PREDICTED: synaptotagmin-like protein 1-like... 680 0.0
Alignment gi|XP_003086440.1| PREDICTED: synaptotagmin-like protein 1-like... 630 0.0
Alignment gi|XP_003086441.1| PREDICTED: synaptotagmin-like protein 1-like... 473 e-133
Alignment gi|NP_001035177.1| synaptotagmin-like protein 2 isoform 5 [Mus ... 252 8e-67
Alignment gi|NP_001035176.1| synaptotagmin-like protein 2 isoform 4 [Mus ... 252 8e-67
Alignment gi|NP_001035175.1| synaptotagmin-like protein 2 isoform 1 [Mus ... 252 8e-67
Alignment gi|NP_001035174.1| synaptotagmin-like protein 2 isoform 2 [Mus ... 252 8e-67
Alignment gi|NP_113571.2| synaptotagmin-like protein 2 isoform 3 [Mus mus... 252 8e-67
>ref|NP_113570.2| synaptotagmin-like protein 1 [Mus musculus].
Length = 568
Score = 707 bits (1824), Expect = 0.0
Identities = 377/570 (66%), Positives = 400/570 (70%), Gaps = 6/570 (1%)
Frame = +1
Query: 124 MPQRGHPSQEGLRVLPGLLMAHEPEPEADGLLDLSFLTEEEQEAIAEVLKRDAHLRQLEE 303
MPQRGHPSQE L LP L MAH P EA+GLLDLSFLTEEEQEAI++VLKRDAHLRQLEE
Sbjct: 1 MPQRGHPSQERLWALPSLPMAHGPGSEAEGLLDLSFLTEEEQEAISDVLKRDAHLRQLEE 60
Query: 304 GRVRKLRASLEDPGQLKILTGDWFQEARSQRHHHTHLGSDLVRASIRRKKGSRGDQARGS 483
GRV KLRASLEDP QLKILTGDWFQEARSQRHHH H GSDLVRASIRRKK +GDQA GS
Sbjct: 61 GRVSKLRASLEDPWQLKILTGDWFQEARSQRHHHAHFGSDLVRASIRRKKSPKGDQALGS 120
Query: 484 NGXXXXXXXXXXXXXXP-RLPIDKAPQESLSEAEGPDFPSPYVPTKASDNXXXXXXXXXX 660
+G R+ I+ A E +E +GPD SPYVP+KAS+
Sbjct: 121 DGEAEAAGENTIEGEPESRVSIEVAAPERNTETQGPDLFSPYVPSKASEGQEEEPQDQEC 180
Query: 661 XXX-----DVQVXXXXXXXXXXXXXSGAEEEPQPRPAQTQEASEILENGEEAPGPDPXXX 825
VQV AE+E QP PAQ++ S+ILENGEEAPG P
Sbjct: 181 ELEAPGEGGVQVAEADPELDPEQK---AEQESQPTPAQSKATSKILENGEEAPGLGPSLD 237
Query: 826 XXXXXXXXXXXXXXXXXXXXXXXXXGEAEAAAVQVRGSVHFALHYEPGAAELRVHVIQCQ 1005
GEAEA VQVRGSV F+L YEPG +ELRV VIQCQ
Sbjct: 238 RMLSSSSSVSSLNSSTLSGSLMSLSGEAEAGTVQVRGSVLFSLRYEPGTSELRVQVIQCQ 297
Query: 1006 GLXXXXXXXSDPYVKGYLLPDKQSKRKTTVKKRNLNPIFNETLRYSVPQAELQGRVLSLS 1185
GL SDPYVK YLLPDKQSKRKT+VKKRNLNPIFNETLR+SV QA+L GRVLSLS
Sbjct: 298 GLAAARRRRSDPYVKSYLLPDKQSKRKTSVKKRNLNPIFNETLRHSVQQADLPGRVLSLS 357
Query: 1186 VWHRESLGRNIFLGEVEVPLDTGNWDSEPTWLPLQPRVPPSPDALPSRGLLSLSLKYIPA 1365
VWHRESLGRNIFLGEVEVPLDT NWDSE TWLPLQPRVPPSPD LPSRGLLSLSLKY+PA
Sbjct: 358 VWHRESLGRNIFLGEVEVPLDTWNWDSEATWLPLQPRVPPSPDELPSRGLLSLSLKYVPA 417
Query: 1366 GSEGAGLPPSGELHFWVKEAQDLVPLRSGSLDTYIQCSVLPDDXXXXXXXXXXXXXXLNP 1545
GSEG G P SGELHFWVKEAQ LVPLR GSLDTYIQCSVLPDD L+P
Sbjct: 418 GSEGGGQPQSGELHFWVKEAQSLVPLRPGSLDTYIQCSVLPDDSRASRQRTRVVRRSLSP 477
Query: 1546 MFNHTMVYDGFEPADLRQACAELSLWDHGTLAXXXXXXXXXXXXXXXXXXXXVPWMDSTP 1725
+FNHTMVYDGF PADLRQACAELSLWDHG LA VPWMDSTP
Sbjct: 478 VFNHTMVYDGFGPADLRQACAELSLWDHGALASRQLGGTRLSLGTGSSYGLQVPWMDSTP 537
Query: 1726 EEKQLWQTLLERPCEWVDGLLPLRTNLAPR 1815
EEKQLWQTLLERPCEWVDGLLPLRTNL PR
Sbjct: 538 EEKQLWQTLLERPCEWVDGLLPLRTNLVPR 567
>ref|XP_003086438.1| PREDICTED: synaptotagmin-like protein 1-like isoform 1 [Mus
musculus].
Length = 567
Score = 704 bits (1816), Expect = 0.0
Identities = 376/570 (65%), Positives = 399/570 (70%), Gaps = 6/570 (1%)
Frame = +1
Query: 124 MPQRGHPSQEGLRVLPGLLMAHEPEPEADGLLDLSFLTEEEQEAIAEVLKRDAHLRQLEE 303
MPQRGHPSQE L LP L MAH P E +GLLDLSFLTEEEQEAI++VLKRDAHLRQLEE
Sbjct: 1 MPQRGHPSQERLWALPSLPMAHGPGSEVEGLLDLSFLTEEEQEAISDVLKRDAHLRQLEE 60
Query: 304 GRVRKLRASLEDPGQLKILTGDWFQEARSQRHHHTHLGSDLVRASIRRKKGSRGDQARGS 483
GRV KLRASLEDP QLKILTGDWFQEARSQRHHH H GSDLVRASIRRKK +GDQA GS
Sbjct: 61 GRVSKLRASLEDPWQLKILTGDWFQEARSQRHHHAHFGSDLVRASIRRKKSPKGDQALGS 120
Query: 484 NGXXXXXXXXXXXXXXP-RLPIDKAPQESLSEAEGPDFPSPYVPTKASDNXXXXXXXXXX 660
+G R+ I+ A E +E +GPD SPYVP+KAS+
Sbjct: 121 DGEAEAAGENTIEGEPESRVSIEVAAPERSTETQGPDLSSPYVPSKASEGQEEEPQDQEC 180
Query: 661 XXX-----DVQVXXXXXXXXXXXXXSGAEEEPQPRPAQTQEASEILENGEEAPGPDPXXX 825
VQV AE+E QP PAQ++ S+ILENGEEAPG P
Sbjct: 181 ELEAPGEGGVQVAEADPELDPEQK---AEQESQPTPAQSKATSKILENGEEAPGLGPSLD 237
Query: 826 XXXXXXXXXXXXXXXXXXXXXXXXXGEAEAAAVQVRGSVHFALHYEPGAAELRVHVIQCQ 1005
GE EA VQVRGSV F+LHYEPG +ELRV VIQCQ
Sbjct: 238 RMLSSSSSVSSLNSSTLSGSLMSLSGE-EAGTVQVRGSVLFSLHYEPGTSELRVQVIQCQ 296
Query: 1006 GLXXXXXXXSDPYVKGYLLPDKQSKRKTTVKKRNLNPIFNETLRYSVPQAELQGRVLSLS 1185
GL SDPYVK YLLPDKQSKRKT+VKKRNLNPIFNETLR+SV QA+L GRVLSLS
Sbjct: 297 GLAAARRRRSDPYVKSYLLPDKQSKRKTSVKKRNLNPIFNETLRHSVQQADLPGRVLSLS 356
Query: 1186 VWHRESLGRNIFLGEVEVPLDTGNWDSEPTWLPLQPRVPPSPDALPSRGLLSLSLKYIPA 1365
VWHRESLGRNIFLGEVEVPLDT NWDSE TWLPLQPRVPPSPD LPSRGLLSLSLKY+PA
Sbjct: 357 VWHRESLGRNIFLGEVEVPLDTWNWDSEATWLPLQPRVPPSPDELPSRGLLSLSLKYVPA 416
Query: 1366 GSEGAGLPPSGELHFWVKEAQDLVPLRSGSLDTYIQCSVLPDDXXXXXXXXXXXXXXLNP 1545
GSEG G P SGELHFWVKEAQ LVPLR GSLDTYIQCSVLPDD L+P
Sbjct: 417 GSEGGGQPQSGELHFWVKEAQSLVPLRPGSLDTYIQCSVLPDDSRASRQRTRVVRRSLSP 476
Query: 1546 MFNHTMVYDGFEPADLRQACAELSLWDHGTLAXXXXXXXXXXXXXXXXXXXXVPWMDSTP 1725
+FNHTMVYDGF PADLRQACAELSLWDHG LA VPWMDSTP
Sbjct: 477 VFNHTMVYDGFGPADLRQACAELSLWDHGALASRQLGGTRLSLGTGSSYGLQVPWMDSTP 536
Query: 1726 EEKQLWQTLLERPCEWVDGLLPLRTNLAPR 1815
EEKQLWQTLLERPCEWVDGLLPLRTNL PR
Sbjct: 537 EEKQLWQTLLERPCEWVDGLLPLRTNLVPR 566
>ref|XP_003086439.1| PREDICTED: synaptotagmin-like protein 1-like isoform 2 [Mus
musculus].
Length = 551
Score = 680 bits (1755), Expect = 0.0
Identities = 364/565 (64%), Positives = 388/565 (68%), Gaps = 1/565 (0%)
Frame = +1
Query: 124 MPQRGHPSQEGLRVLPGLLMAHEPEPEADGLLDLSFLTEEEQEAIAEVLKRDAHLRQLEE 303
MPQRGHPSQE L LP L MAH P E +GLLDLSFLTEEEQEAI++VLKRDAHLRQLEE
Sbjct: 1 MPQRGHPSQERLWALPSLPMAHGPGSEVEGLLDLSFLTEEEQEAISDVLKRDAHLRQLEE 60
Query: 304 GRVRKLRASLEDPGQLKILTGDWFQEARSQRHHHTHLGSDLVRASIRRKKGSRGDQARGS 483
GRV KLRASLEDP QLKILTGDWFQEARSQRHHH H GSDLVRASIRRKK +GDQA GS
Sbjct: 61 GRVSKLRASLEDPWQLKILTGDWFQEARSQRHHHAHFGSDLVRASIRRKKSPKGDQALGS 120
Query: 484 NGXXXXXXXXXXXXXXP-RLPIDKAPQESLSEAEGPDFPSPYVPTKASDNXXXXXXXXXX 660
+G R+ I+ A E +E + + + S
Sbjct: 121 DGEAEAAGENTIEGEPESRVSIEVAAPERSTETQASEGQEEEPQDQESPGEGGVQVAEAD 180
Query: 661 XXXDVQVXXXXXXXXXXXXXSGAEEEPQPRPAQTQEASEILENGEEAPGPDPXXXXXXXX 840
D + AE+E QP PAQ++ S+ILENGEEAPG P
Sbjct: 181 PELDPE--------------QKAEQESQPTPAQSKATSKILENGEEAPGLGPSLDRMLSS 226
Query: 841 XXXXXXXXXXXXXXXXXXXXGEAEAAAVQVRGSVHFALHYEPGAAELRVHVIQCQGLXXX 1020
GE EA VQVRGSV F+LHYEPG +ELRV VIQCQGL
Sbjct: 227 SSSVSSLNSSTLSGSLMSLSGE-EAGTVQVRGSVLFSLHYEPGTSELRVQVIQCQGLAAA 285
Query: 1021 XXXXSDPYVKGYLLPDKQSKRKTTVKKRNLNPIFNETLRYSVPQAELQGRVLSLSVWHRE 1200
SDPYVK YLLPDKQSKRKT+VKKRNLNPIFNETLR+SV QA+L GRVLSLSVWHRE
Sbjct: 286 RRRRSDPYVKSYLLPDKQSKRKTSVKKRNLNPIFNETLRHSVQQADLPGRVLSLSVWHRE 345
Query: 1201 SLGRNIFLGEVEVPLDTGNWDSEPTWLPLQPRVPPSPDALPSRGLLSLSLKYIPAGSEGA 1380
SLGRNIFLGEVEVPLDT NWDSE TWLPLQPRVPPSPD LPSRGLLSLSLKY+PAGSEG
Sbjct: 346 SLGRNIFLGEVEVPLDTWNWDSEATWLPLQPRVPPSPDELPSRGLLSLSLKYVPAGSEGG 405
Query: 1381 GLPPSGELHFWVKEAQDLVPLRSGSLDTYIQCSVLPDDXXXXXXXXXXXXXXLNPMFNHT 1560
G P SGELHFWVKEAQ LVPLR GSLDTYIQCSVLPDD L+P+FNHT
Sbjct: 406 GQPQSGELHFWVKEAQSLVPLRPGSLDTYIQCSVLPDDSRASRQRTRVVRRSLSPVFNHT 465
Query: 1561 MVYDGFEPADLRQACAELSLWDHGTLAXXXXXXXXXXXXXXXXXXXXVPWMDSTPEEKQL 1740
MVYDGF PADLRQACAELSLWDHG LA VPWMDSTPEEKQL
Sbjct: 466 MVYDGFGPADLRQACAELSLWDHGALASRQLGGTRLSLGTGSSYGLQVPWMDSTPEEKQL 525
Query: 1741 WQTLLERPCEWVDGLLPLRTNLAPR 1815
WQTLLERPCEWVDGLLPLRTNL PR
Sbjct: 526 WQTLLERPCEWVDGLLPLRTNLVPR 550
>ref|XP_003086440.1| PREDICTED: synaptotagmin-like protein 1-like isoform 3 [Mus
musculus].
Length = 577
Score = 630 bits (1625), Expect(2) = 0.0
Identities = 339/512 (66%), Positives = 362/512 (70%), Gaps = 6/512 (1%)
Frame = +1
Query: 124 MPQRGHPSQEGLRVLPGLLMAHEPEPEADGLLDLSFLTEEEQEAIAEVLKRDAHLRQLEE 303
MPQRGHPSQE L LP L MAH P E +GLLDLSFLTEEEQEAI++VLKRDAHLRQLEE
Sbjct: 1 MPQRGHPSQERLWALPSLPMAHGPGSEVEGLLDLSFLTEEEQEAISDVLKRDAHLRQLEE 60
Query: 304 GRVRKLRASLEDPGQLKILTGDWFQEARSQRHHHTHLGSDLVRASIRRKKGSRGDQARGS 483
GRV KLRASLEDP QLKILTGDWFQEARSQRHHH H GSDLVRASIRRKK +GDQA GS
Sbjct: 61 GRVSKLRASLEDPWQLKILTGDWFQEARSQRHHHAHFGSDLVRASIRRKKSPKGDQALGS 120
Query: 484 NGXXXXXXXXXXXXXXP-RLPIDKAPQESLSEAEGPDFPSPYVPTKASDNXXXXXXXXXX 660
+G R+ I+ A E +E +GPD SPYVP+KAS+
Sbjct: 121 DGEAEAAGENTIEGEPESRVSIEVAAPERSTETQGPDLSSPYVPSKASEGQEEEPQDQEC 180
Query: 661 XXX-----DVQVXXXXXXXXXXXXXSGAEEEPQPRPAQTQEASEILENGEEAPGPDPXXX 825
VQV AE+E QP PAQ++ S+ILENGEEAPG P
Sbjct: 181 ELEAPGEGGVQVAEADPELDPEQK---AEQESQPTPAQSKATSKILENGEEAPGLGPSLD 237
Query: 826 XXXXXXXXXXXXXXXXXXXXXXXXXGEAEAAAVQVRGSVHFALHYEPGAAELRVHVIQCQ 1005
GE EA VQVRGSV F+LHYEPG +ELRV VIQCQ
Sbjct: 238 RMLSSSSSVSSLNSSTLSGSLMSLSGE-EAGTVQVRGSVLFSLHYEPGTSELRVQVIQCQ 296
Query: 1006 GLXXXXXXXSDPYVKGYLLPDKQSKRKTTVKKRNLNPIFNETLRYSVPQAELQGRVLSLS 1185
GL SDPYVK YLLPDKQSKRKT+VKKRNLNPIFNETLR+SV QA+L GRVLSLS
Sbjct: 297 GLAAARRRRSDPYVKSYLLPDKQSKRKTSVKKRNLNPIFNETLRHSVQQADLPGRVLSLS 356
Query: 1186 VWHRESLGRNIFLGEVEVPLDTGNWDSEPTWLPLQPRVPPSPDALPSRGLLSLSLKYIPA 1365
VWHRESLGRNIFLGEVEVPLDT NWDSE TWLPLQPRVPPSPD LPSRGLLSLSLKY+PA
Sbjct: 357 VWHRESLGRNIFLGEVEVPLDTWNWDSEATWLPLQPRVPPSPDELPSRGLLSLSLKYVPA 416
Query: 1366 GSEGAGLPPSGELHFWVKEAQDLVPLRSGSLDTYIQCSVLPDDXXXXXXXXXXXXXXLNP 1545
GSEG G P SGELHFWVKEAQ LVPLR GSLDTYIQCSVLPDD L+P
Sbjct: 417 GSEGGGQPQSGELHFWVKEAQSLVPLRPGSLDTYIQCSVLPDDSRASRQRTRVVRRSLSP 476
Query: 1546 MFNHTMVYDGFEPADLRQACAELSLWDHGTLA 1641
+FNHTMVYDGF PADLRQACAELSLWDHG LA
Sbjct: 477 VFNHTMVYDGFGPADLRQACAELSLWDHGALA 508
Score = 47.8 bits (112), Expect(2) = 0.0
Identities = 24/56 (42%), Positives = 24/56 (42%)
Frame = +2
Query: 1694 GSRCPGWTPXXXXXXXXXXXXXXXXXXWTAFCPSEPTWPPGLSCPTSPTKPLSLDP 1861
G RCPGW P W AFCPSEPTW PG S KPL P
Sbjct: 525 GFRCPGWIPHRRRSSCGRHSWSGPVSGWMAFCPSEPTWSPGHSL----VKPLCGPP 576
>ref|XP_003086441.1| PREDICTED: synaptotagmin-like protein 1-like isoform 4 [Mus
musculus].
Length = 329
Score = 473 bits (1216), Expect = e-133
Identities = 234/302 (77%), Positives = 242/302 (80%)
Frame = +1
Query: 910 EAAAVQVRGSVHFALHYEPGAAELRVHVIQCQGLXXXXXXXSDPYVKGYLLPDKQSKRKT 1089
EA VQVRGSV F+LHYEPG +ELRV VIQCQGL SDPYVK YLLPDKQSKRKT
Sbjct: 27 EAGTVQVRGSVLFSLHYEPGTSELRVQVIQCQGLAAARRRRSDPYVKSYLLPDKQSKRKT 86
Query: 1090 TVKKRNLNPIFNETLRYSVPQAELQGRVLSLSVWHRESLGRNIFLGEVEVPLDTGNWDSE 1269
+VKKRNLNPIFNETLR+SV QA+L GRVLSLSVWHRESLGRNIFLGEVEVPLDT NWDSE
Sbjct: 87 SVKKRNLNPIFNETLRHSVQQADLPGRVLSLSVWHRESLGRNIFLGEVEVPLDTWNWDSE 146
Query: 1270 PTWLPLQPRVPPSPDALPSRGLLSLSLKYIPAGSEGAGLPPSGELHFWVKEAQDLVPLRS 1449
TWLPLQPRVPPSPD LPSRGLLSLSLKY+PAGSEG G P SGELHFWVKEAQ LVPLR
Sbjct: 147 ATWLPLQPRVPPSPDELPSRGLLSLSLKYVPAGSEGGGQPQSGELHFWVKEAQSLVPLRP 206
Query: 1450 GSLDTYIQCSVLPDDXXXXXXXXXXXXXXLNPMFNHTMVYDGFEPADLRQACAELSLWDH 1629
GSLDTYIQCSVLPDD L+P+FNHTMVYDGF PADLRQACAELSLWDH
Sbjct: 207 GSLDTYIQCSVLPDDSRASRQRTRVVRRSLSPVFNHTMVYDGFGPADLRQACAELSLWDH 266
Query: 1630 GTLAXXXXXXXXXXXXXXXXXXXXVPWMDSTPEEKQLWQTLLERPCEWVDGLLPLRTNLA 1809
G LA VPWMDSTPEEKQLWQTLLERPCEWVDGLLPLRTNL
Sbjct: 267 GALASRQLGGTRLSLGTGSSYGLQVPWMDSTPEEKQLWQTLLERPCEWVDGLLPLRTNLV 326
Query: 1810 PR 1815
PR
Sbjct: 327 PR 328
>ref|NP_001035177.1| synaptotagmin-like protein 2 isoform 5 [Mus musculus].
Length = 336
Score = 252 bits (643), Expect = 8e-67
Identities = 131/300 (43%), Positives = 174/300 (58%), Gaps = 8/300 (2%)
Frame = +1
Query: 922 VQVRGSVHFALHYEPGAAELRVHVIQCQGLXXXXXXX--SDPYVKGYLLPDK--QSKRKT 1089
++V+GSV FAL Y EL V V QC+ L SDPYVK YLLPDK K+KT
Sbjct: 28 LEVKGSVQFALDYVESLKELHVFVAQCKDLAAADVKKQRSDPYVKTYLLPDKGKMGKKKT 87
Query: 1090 TVKKRNLNPIFNETLRYSVPQAELQGRVLSLSVWHRESLGRNIFLGEVEVPLDTGNWDSE 1269
V K+ LNP++NE LRY + + L+ + L+LSVWHR++ RN FLGEVE+ L+T +WDS+
Sbjct: 88 LVVKKTLNPVYNEILRYKIERQFLKTQKLNLSVWHRDTFKRNSFLGEVELDLETWDWDSK 147
Query: 1270 PT----WLPLQPRVPPSPDALPSRGLLSLSLKYIPAGSEGAGLPPSGELHFWVKEAQDLV 1437
W PL+ + P +RG + L+L+Y+P S G LP +GE+H WVKE DL
Sbjct: 148 QNKQLKWYPLKRKTAPVALETENRGEMKLALQYVPEPSPGKKLPTTGEVHIWVKECLDLP 207
Query: 1438 PLRSGSLDTYIQCSVLPDDXXXXXXXXXXXXXXLNPMFNHTMVYDGFEPADLRQACAELS 1617
LR L+++++C++LPD NP+FNHTMVYDGF P DL +AC EL+
Sbjct: 208 LLRGSHLNSFVKCTILPDTSRKSRQKTRAVGKTTNPVFNHTMVYDGFRPEDLMEACVELT 267
Query: 1618 LWDHGTLAXXXXXXXXXXXXXXXXXXXXVPWMDSTPEEKQLWQTLLERPCEWVDGLLPLR 1797
+WDH L V WMDST EE LW+ ++ P WV+ LPLR
Sbjct: 268 VWDHYKLTNQFLGGLRIGFGTGKSYGTEVDWMDSTSEEVALWEKMVNSPNTWVEATLPLR 327
>ref|NP_001035176.1| synaptotagmin-like protein 2 isoform 4 [Mus musculus].
Length = 376
Score = 252 bits (643), Expect = 8e-67
Identities = 131/300 (43%), Positives = 174/300 (58%), Gaps = 8/300 (2%)
Frame = +1
Query: 922 VQVRGSVHFALHYEPGAAELRVHVIQCQGLXXXXXXX--SDPYVKGYLLPDK--QSKRKT 1089
++V+GSV FAL Y EL V V QC+ L SDPYVK YLLPDK K+KT
Sbjct: 68 LEVKGSVQFALDYVESLKELHVFVAQCKDLAAADVKKQRSDPYVKTYLLPDKGKMGKKKT 127
Query: 1090 TVKKRNLNPIFNETLRYSVPQAELQGRVLSLSVWHRESLGRNIFLGEVEVPLDTGNWDSE 1269
V K+ LNP++NE LRY + + L+ + L+LSVWHR++ RN FLGEVE+ L+T +WDS+
Sbjct: 128 LVVKKTLNPVYNEILRYKIERQFLKTQKLNLSVWHRDTFKRNSFLGEVELDLETWDWDSK 187
Query: 1270 PT----WLPLQPRVPPSPDALPSRGLLSLSLKYIPAGSEGAGLPPSGELHFWVKEAQDLV 1437
W PL+ + P +RG + L+L+Y+P S G LP +GE+H WVKE DL
Sbjct: 188 QNKQLKWYPLKRKTAPVALETENRGEMKLALQYVPEPSPGKKLPTTGEVHIWVKECLDLP 247
Query: 1438 PLRSGSLDTYIQCSVLPDDXXXXXXXXXXXXXXLNPMFNHTMVYDGFEPADLRQACAELS 1617
LR L+++++C++LPD NP+FNHTMVYDGF P DL +AC EL+
Sbjct: 248 LLRGSHLNSFVKCTILPDTSRKSRQKTRAVGKTTNPVFNHTMVYDGFRPEDLMEACVELT 307
Query: 1618 LWDHGTLAXXXXXXXXXXXXXXXXXXXXVPWMDSTPEEKQLWQTLLERPCEWVDGLLPLR 1797
+WDH L V WMDST EE LW+ ++ P WV+ LPLR
Sbjct: 308 VWDHYKLTNQFLGGLRIGFGTGKSYGTEVDWMDSTSEEVALWEKMVNSPNTWVEATLPLR 367
>ref|NP_001035175.1| synaptotagmin-like protein 2 isoform 1 [Mus musculus].
Length = 1280
Score = 252 bits (643), Expect = 8e-67
Identities = 131/300 (43%), Positives = 174/300 (58%), Gaps = 8/300 (2%)
Frame = +1
Query: 922 VQVRGSVHFALHYEPGAAELRVHVIQCQGLXXXXXXX--SDPYVKGYLLPDK--QSKRKT 1089
++V+GSV FAL Y EL V V QC+ L SDPYVK YLLPDK K+KT
Sbjct: 972 LEVKGSVQFALDYVESLKELHVFVAQCKDLAAADVKKQRSDPYVKTYLLPDKGKMGKKKT 1031
Query: 1090 TVKKRNLNPIFNETLRYSVPQAELQGRVLSLSVWHRESLGRNIFLGEVEVPLDTGNWDSE 1269
V K+ LNP++NE LRY + + L+ + L+LSVWHR++ RN FLGEVE+ L+T +WDS+
Sbjct: 1032 LVVKKTLNPVYNEILRYKIERQFLKTQKLNLSVWHRDTFKRNSFLGEVELDLETWDWDSK 1091
Query: 1270 PT----WLPLQPRVPPSPDALPSRGLLSLSLKYIPAGSEGAGLPPSGELHFWVKEAQDLV 1437
W PL+ + P +RG + L+L+Y+P S G LP +GE+H WVKE DL
Sbjct: 1092 QNKQLKWYPLKRKTAPVALETENRGEMKLALQYVPEPSPGKKLPTTGEVHIWVKECLDLP 1151
Query: 1438 PLRSGSLDTYIQCSVLPDDXXXXXXXXXXXXXXLNPMFNHTMVYDGFEPADLRQACAELS 1617
LR L+++++C++LPD NP+FNHTMVYDGF P DL +AC EL+
Sbjct: 1152 LLRGSHLNSFVKCTILPDTSRKSRQKTRAVGKTTNPVFNHTMVYDGFRPEDLMEACVELT 1211
Query: 1618 LWDHGTLAXXXXXXXXXXXXXXXXXXXXVPWMDSTPEEKQLWQTLLERPCEWVDGLLPLR 1797
+WDH L V WMDST EE LW+ ++ P WV+ LPLR
Sbjct: 1212 VWDHYKLTNQFLGGLRIGFGTGKSYGTEVDWMDSTSEEVALWEKMVNSPNTWVEATLPLR 1271
>ref|NP_001035174.1| synaptotagmin-like protein 2 isoform 2 [Mus musculus].
Length = 934
Score = 252 bits (643), Expect = 8e-67
Identities = 131/300 (43%), Positives = 174/300 (58%), Gaps = 8/300 (2%)
Frame = +1
Query: 922 VQVRGSVHFALHYEPGAAELRVHVIQCQGLXXXXXXX--SDPYVKGYLLPDK--QSKRKT 1089
++V+GSV FAL Y EL V V QC+ L SDPYVK YLLPDK K+KT
Sbjct: 626 LEVKGSVQFALDYVESLKELHVFVAQCKDLAAADVKKQRSDPYVKTYLLPDKGKMGKKKT 685
Query: 1090 TVKKRNLNPIFNETLRYSVPQAELQGRVLSLSVWHRESLGRNIFLGEVEVPLDTGNWDSE 1269
V K+ LNP++NE LRY + + L+ + L+LSVWHR++ RN FLGEVE+ L+T +WDS+
Sbjct: 686 LVVKKTLNPVYNEILRYKIERQFLKTQKLNLSVWHRDTFKRNSFLGEVELDLETWDWDSK 745
Query: 1270 PT----WLPLQPRVPPSPDALPSRGLLSLSLKYIPAGSEGAGLPPSGELHFWVKEAQDLV 1437
W PL+ + P +RG + L+L+Y+P S G LP +GE+H WVKE DL
Sbjct: 746 QNKQLKWYPLKRKTAPVALETENRGEMKLALQYVPEPSPGKKLPTTGEVHIWVKECLDLP 805
Query: 1438 PLRSGSLDTYIQCSVLPDDXXXXXXXXXXXXXXLNPMFNHTMVYDGFEPADLRQACAELS 1617
LR L+++++C++LPD NP+FNHTMVYDGF P DL +AC EL+
Sbjct: 806 LLRGSHLNSFVKCTILPDTSRKSRQKTRAVGKTTNPVFNHTMVYDGFRPEDLMEACVELT 865
Query: 1618 LWDHGTLAXXXXXXXXXXXXXXXXXXXXVPWMDSTPEEKQLWQTLLERPCEWVDGLLPLR 1797
+WDH L V WMDST EE LW+ ++ P WV+ LPLR
Sbjct: 866 VWDHYKLTNQFLGGLRIGFGTGKSYGTEVDWMDSTSEEVALWEKMVNSPNTWVEATLPLR 925
Score = 91.3 bits (225), Expect = 2e-18
Identities = 44/80 (55%), Positives = 62/80 (77%)
Frame = +1
Query: 214 LLDLSFLTEEEQEAIAEVLKRDAHLRQLEEGRVRKLRASLEDPGQLKILTGDWFQEARSQ 393
++DLSFLTEEEQ+AI +VL+RDA L++ EE RVR L ++D QLK ++G WF EA+++
Sbjct: 1 MIDLSFLTEEEQDAILKVLQRDAALKRAEEERVRHLPEKIKDDQQLKNMSGQWFYEAKAK 60
Query: 394 RHHHTHLGSDLVRASIRRKK 453
RH G+D++RAS+RRKK
Sbjct: 61 RHRDKIHGADIIRASMRRKK 80
>ref|NP_113571.2| synaptotagmin-like protein 2 isoform 3 [Mus musculus].
Length = 910
Score = 252 bits (643), Expect = 8e-67
Identities = 131/300 (43%), Positives = 174/300 (58%), Gaps = 8/300 (2%)
Frame = +1
Query: 922 VQVRGSVHFALHYEPGAAELRVHVIQCQGLXXXXXXX--SDPYVKGYLLPDK--QSKRKT 1089
++V+GSV FAL Y EL V V QC+ L SDPYVK YLLPDK K+KT
Sbjct: 602 LEVKGSVQFALDYVESLKELHVFVAQCKDLAAADVKKQRSDPYVKTYLLPDKGKMGKKKT 661
Query: 1090 TVKKRNLNPIFNETLRYSVPQAELQGRVLSLSVWHRESLGRNIFLGEVEVPLDTGNWDSE 1269
V K+ LNP++NE LRY + + L+ + L+LSVWHR++ RN FLGEVE+ L+T +WDS+
Sbjct: 662 LVVKKTLNPVYNEILRYKIERQFLKTQKLNLSVWHRDTFKRNSFLGEVELDLETWDWDSK 721
Query: 1270 PT----WLPLQPRVPPSPDALPSRGLLSLSLKYIPAGSEGAGLPPSGELHFWVKEAQDLV 1437
W PL+ + P +RG + L+L+Y+P S G LP +GE+H WVKE DL
Sbjct: 722 QNKQLKWYPLKRKTAPVALETENRGEMKLALQYVPEPSPGKKLPTTGEVHIWVKECLDLP 781
Query: 1438 PLRSGSLDTYIQCSVLPDDXXXXXXXXXXXXXXLNPMFNHTMVYDGFEPADLRQACAELS 1617
LR L+++++C++LPD NP+FNHTMVYDGF P DL +AC EL+
Sbjct: 782 LLRGSHLNSFVKCTILPDTSRKSRQKTRAVGKTTNPVFNHTMVYDGFRPEDLMEACVELT 841
Query: 1618 LWDHGTLAXXXXXXXXXXXXXXXXXXXXVPWMDSTPEEKQLWQTLLERPCEWVDGLLPLR 1797
+WDH L V WMDST EE LW+ ++ P WV+ LPLR
Sbjct: 842 VWDHYKLTNQFLGGLRIGFGTGKSYGTEVDWMDSTSEEVALWEKMVNSPNTWVEATLPLR 901
Score = 91.3 bits (225), Expect = 2e-18
Identities = 44/80 (55%), Positives = 62/80 (77%)
Frame = +1
Query: 214 LLDLSFLTEEEQEAIAEVLKRDAHLRQLEEGRVRKLRASLEDPGQLKILTGDWFQEARSQ 393
++DLSFLTEEEQ+AI +VL+RDA L++ EE RVR L ++D QLK ++G WF EA+++
Sbjct: 1 MIDLSFLTEEEQDAILKVLQRDAALKRAEEERVRHLPEKIKDDQQLKNMSGQWFYEAKAK 60
Query: 394 RHHHTHLGSDLVRASIRRKK 453
RH G+D++RAS+RRKK
Sbjct: 61 RHRDKIHGADIIRASMRRKK 80
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.315 0.135 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 58,463,695
Number of extensions: 1674659
Number of successful extensions: 11489
Number of sequences better than 1.0e-05: 52
Number of HSP's gapped: 10660
Number of HSP's successfully gapped: 71
Length of query: 647
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 539
Effective length of database: 12,373,671
Effective search space: 6669408669
Effective search space used: 6669408669
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LVRM1_0039_H04
(1943 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127774.2| PREDICTED: LOW QUALITY PROTEIN: synaptotagmi... 771 0.0
Alignment gi|XP_003357273.1| PREDICTED: hypothetical protein LOC100627498... 248 7e-66
Alignment gi|XP_003360309.1| PREDICTED: synaptotagmin-like protein 5 isof... 170 2e-42
Alignment gi|XP_003135064.2| PREDICTED: synaptotagmin-like protein 5 isof... 170 2e-42
Alignment gi|XP_001924452.2| PREDICTED: synaptotagmin-like protein 4 [Sus... 169 7e-42
Alignment gi|XP_003353214.1| PREDICTED: synaptotagmin-like protein 3 [Sus... 141 1e-33
Alignment gi|XP_003135282.2| PREDICTED: synaptotagmin-like protein 4-like... 115 1e-25
Alignment gi|XP_003130663.2| PREDICTED: synaptotagmin-2 [Sus scrofa]. 101 2e-21
Alignment gi|XP_003127416.1| PREDICTED: synaptotagmin-3 [Sus scrofa]. 100 3e-21
Alignment gi|XP_003356112.1| PREDICTED: synaptotagmin-5-like isoform 2 [S... 97 2e-20
>ref|XP_003127774.2| PREDICTED: LOW QUALITY PROTEIN: synaptotagmin-like protein 1 isoform
1, partial [Sus scrofa].
Length = 509
Score = 771 bits (1991), Expect = 0.0
Identities = 399/511 (78%), Positives = 399/511 (78%)
Frame = +1
Query: 286 LRQLEEGRVRKLRASLEDPGQLKILTGDWFQEARSQRHHHTHLGSDLVRASIRRKKGSRG 465
LRQLEEGRVRKLRASLEDPGQLKILTGDWFQEARSQRHHHTHLGSDLVRASIRRKKGSRG
Sbjct: 1 LRQLEEGRVRKLRASLEDPGQLKILTGDWFQEARSQRHHHTHLGSDLVRASIRRKKGSRG 60
Query: 466 DQARGSNGXXXXXXXXXXXXXXPRLPIDKAPQESLSEAEGPDFPSPYVPTKASDNXXXXX 645
DQARGSNG PRLPIDKAPQESLSEAEGPDFPSPYVPTKASDN
Sbjct: 61 DQARGSNGEAEAAGKETEEALEPRLPIDKAPQESLSEAEGPDFPSPYVPTKASDNEEEPP 120
Query: 646 XXXXXXXXDVQVXXXXXXXXXXXXXSGAEEEPQPRPAQTQEASEILENGEEAPGPDPXXX 825
DVQV SGAEEEPQPRPAQTQEASEILENGEEAPGPDP
Sbjct: 121 AQEAPGPADVQVPAAEEADPEPKPPSGAEEEPQPRPAQTQEASEILENGEEAPGPDPSLD 180
Query: 826 XXXXXXXXXXXXXXXXXXXXXXXXXGEAEAAAVQVRGSVHFALHYEPGAAELRVHVIQCQ 1005
AEAAAVQVRGSVHFALHYEPGAAELRVHVIQCQ
Sbjct: 181 RMLSSSSSMSSLNSSTVRGXGRRPG--AEAAAVQVRGSVHFALHYEPGAAELRVHVIQCQ 238
Query: 1006 GLXXXXXXXSDPYVKGYLLPDKQSKRKTTVKKRNLNPIFNETLRYSVPQAELQGRVLSLS 1185
GL SDPYVK YLLPDKQSKRKTTVKKRNLNPIFNETLRYSVPQAELQGRVLSLS
Sbjct: 239 GLAAARRRRSDPYVKSYLLPDKQSKRKTTVKKRNLNPIFNETLRYSVPQAELQGRVLSLS 298
Query: 1186 VWHRESLGRNIFLGEVEVPLDTGNWDSEPTWLPLQPRVPPSPDALPSRGLLSLSLKYIPA 1365
VWHRESLGRNIFLGEVEVPLDT NWDSEPTWLPLQPRVPPSPDALPSRGLLSLSLKYIPA
Sbjct: 299 VWHRESLGRNIFLGEVEVPLDTWNWDSEPTWLPLQPRVPPSPDALPSRGLLSLSLKYIPA 358
Query: 1366 GSEGAGLPPSGELHFWVKEAQDLVPLRSGSLDTYIQCSVLPDDXXXXXXXXXXXXXXLNP 1545
GSEGAGLPPSGELHFWVKEAQDLVPLRSGSLDTYIQCSVLPDD LNP
Sbjct: 359 GSEGAGLPPSGELHFWVKEAQDLVPLRSGSLDTYIQCSVLPDDSRASRQRTRVVRRSLNP 418
Query: 1546 MFNHTMVYDGFEPADLRQACAELSLWDHGTLAXXXXXXXXXXXXXXXXXXXXVPWMDSTP 1725
MFNHTMVYDGFEPADLRQACAELSLWDHGTLA VPWMDSTP
Sbjct: 419 MFNHTMVYDGFEPADLRQACAELSLWDHGTLASRQLGGTRLSLGTGSSYGLQVPWMDSTP 478
Query: 1726 EEKQLWQTLLERPCEWVDGLLPLRTNLAPRT 1818
EEKQLWQTLLERPCEWVDGLLPLRTNLAPRT
Sbjct: 479 EEKQLWQTLLERPCEWVDGLLPLRTNLAPRT 509
>ref|XP_003357273.1| PREDICTED: hypothetical protein LOC100627498 [Sus scrofa].
Length = 1273
Score = 248 bits (634), Expect = 7e-66
Identities = 127/300 (42%), Positives = 173/300 (57%), Gaps = 8/300 (2%)
Frame = +1
Query: 922 VQVRGSVHFALHYEPGAAELRVHVIQCQGLXXXXXXX--SDPYVKGYLLPDK--QSKRKT 1089
++VRGS+ FA+ Y EL V V QC+ L SDPYVK YLLPDK K+KT
Sbjct: 965 LEVRGSIQFAIDYVDSLKELHVFVAQCKDLAAADVKKQRSDPYVKTYLLPDKGKMGKKKT 1024
Query: 1090 TVKKRNLNPIFNETLRYSVPQAELQGRVLSLSVWHRESLGRNIFLGEVEVPLDTGNWDSE 1269
V K+ LNP++NE LRY + + L+ + L+LSVWHR++ RN FLGEVE+ L+T +WD++
Sbjct: 1025 LVVKKTLNPVYNEILRYKIEKQILKTQKLNLSVWHRDTFKRNSFLGEVELDLETWDWDNK 1084
Query: 1270 PT----WLPLQPRVPPSPDALPSRGLLSLSLKYIPAGSEGAGLPPSGELHFWVKEAQDLV 1437
W PL+ + P +RG + L+L+Y+P G LP +GE+H WVKE DL
Sbjct: 1085 QNKQLKWYPLKRKTAPVALEAENRGEMKLALQYVPEPMPGKKLPTTGEVHIWVKECLDLP 1144
Query: 1438 PLRSGSLDTYIQCSVLPDDXXXXXXXXXXXXXXLNPMFNHTMVYDGFEPADLRQACAELS 1617
LR L+++++C++LPD NP+FNHTMVYDGF P DL +AC EL+
Sbjct: 1145 LLRGSHLNSFVKCTILPDTSRKSRQKTRAVGKTTNPVFNHTMVYDGFRPEDLTEACVELT 1204
Query: 1618 LWDHGTLAXXXXXXXXXXXXXXXXXXXXVPWMDSTPEEKQLWQTLLERPCEWVDGLLPLR 1797
+WDH L V WMDST EE LW+ ++ P W++ LPLR
Sbjct: 1205 VWDHYKLTNQFLGGLRIGFGTGKSYGTEVDWMDSTSEEVALWEKMVNSPNTWIEATLPLR 1264
>ref|XP_003360309.1| PREDICTED: synaptotagmin-like protein 5 isoform 2 [Sus scrofa].
Length = 754
Score = 170 bits (431), Expect = 2e-42
Identities = 106/326 (32%), Positives = 163/326 (50%), Gaps = 28/326 (8%)
Frame = +1
Query: 922 VQVRGSVHFALHYEPGAAELRVHVIQCQGLXXXXXXX--SDPYVKGYLLPDKQ--SKRKT 1089
V+V G + + Y L + V C+ L +D YVK YLLPDK +KRKT
Sbjct: 428 VKVSGEILLHISYCYKTGGLYIFVKNCRNLAIGDEKKQRTDAYVKSYLLPDKSRNNKRKT 487
Query: 1090 TVKKRNLNPIFNETLRYSVPQAELQGRVLSLSVWHRESLGRNIFLGEVEVPLDTGNWDS- 1266
++ NP FNETL+Y++ +L+ R L LSVWH + GRN FLGEVE+P D+ N+++
Sbjct: 488 KIRT-GTNPEFNETLKYTISHTQLETRTLQLSVWHHDRFGRNSFLGEVEIPFDSWNFENP 546
Query: 1267 EPTWLPLQPRVPPSPD-ALPSRGLLSLSLKYIP--------------------AGSEGAG 1383
W LQP+V + D L +G L++ L+YIP + A
Sbjct: 547 SDEWFVLQPKVEYAADTGLQYKGELTVVLRYIPPEENMALPLEQLQGKKTFKRGKKKDAP 606
Query: 1384 LPPSGELHFWVKEAQDLVPLRS-GSLDTYIQCSVLPDDXXXXXXXXXXXXXXLNPMFNHT 1560
+ G L +VKEA++L ++S G+ D++++ +LPDD +NP +NHT
Sbjct: 607 ISSGGILEVFVKEAKNLTAVKSGGTSDSFVKGYLLPDDNKATKHKTLVIKKSVNPQWNHT 666
Query: 1561 MVYDGFEPADLRQACAELSLWDHGTL-AXXXXXXXXXXXXXXXXXXXXVPWMDSTPEEKQ 1737
++ G P D++ C EL++WD + WMD+ EE++
Sbjct: 667 FMFSGLHPQDIKDVCLELTVWDKEAFSSNIFLGGVRLNSGSGVSRGKSADWMDAQGEEQR 726
Query: 1738 LWQTLLERPCEWVDGLLPLRTNLAPR 1815
LWQ + + P V+G+L LR ++ R
Sbjct: 727 LWQKMADNPGTAVEGVLMLRASMGKR 752
>ref|XP_003135064.2| PREDICTED: synaptotagmin-like protein 5 isoform 1 [Sus scrofa].
Length = 732
Score = 170 bits (431), Expect = 2e-42
Identities = 106/326 (32%), Positives = 163/326 (50%), Gaps = 28/326 (8%)
Frame = +1
Query: 922 VQVRGSVHFALHYEPGAAELRVHVIQCQGLXXXXXXX--SDPYVKGYLLPDKQ--SKRKT 1089
V+V G + + Y L + V C+ L +D YVK YLLPDK +KRKT
Sbjct: 406 VKVSGEILLHISYCYKTGGLYIFVKNCRNLAIGDEKKQRTDAYVKSYLLPDKSRNNKRKT 465
Query: 1090 TVKKRNLNPIFNETLRYSVPQAELQGRVLSLSVWHRESLGRNIFLGEVEVPLDTGNWDS- 1266
++ NP FNETL+Y++ +L+ R L LSVWH + GRN FLGEVE+P D+ N+++
Sbjct: 466 KIRT-GTNPEFNETLKYTISHTQLETRTLQLSVWHHDRFGRNSFLGEVEIPFDSWNFENP 524
Query: 1267 EPTWLPLQPRVPPSPD-ALPSRGLLSLSLKYIP--------------------AGSEGAG 1383
W LQP+V + D L +G L++ L+YIP + A
Sbjct: 525 SDEWFVLQPKVEYAADTGLQYKGELTVVLRYIPPEENMALPLEQLQGKKTFKRGKKKDAP 584
Query: 1384 LPPSGELHFWVKEAQDLVPLRS-GSLDTYIQCSVLPDDXXXXXXXXXXXXXXLNPMFNHT 1560
+ G L +VKEA++L ++S G+ D++++ +LPDD +NP +NHT
Sbjct: 585 ISSGGILEVFVKEAKNLTAVKSGGTSDSFVKGYLLPDDNKATKHKTLVIKKSVNPQWNHT 644
Query: 1561 MVYDGFEPADLRQACAELSLWDHGTL-AXXXXXXXXXXXXXXXXXXXXVPWMDSTPEEKQ 1737
++ G P D++ C EL++WD + WMD+ EE++
Sbjct: 645 FMFSGLHPQDIKDVCLELTVWDKEAFSSNIFLGGVRLNSGSGVSRGKSADWMDAQGEEQR 704
Query: 1738 LWQTLLERPCEWVDGLLPLRTNLAPR 1815
LWQ + + P V+G+L LR ++ R
Sbjct: 705 LWQKMADNPGTAVEGVLMLRASMGKR 730
>ref|XP_001924452.2| PREDICTED: synaptotagmin-like protein 4 [Sus scrofa].
Length = 661
Score = 169 bits (427), Expect = 7e-42
Identities = 113/302 (37%), Positives = 148/302 (49%), Gaps = 8/302 (2%)
Frame = +1
Query: 928 VRGSVHFALHYEPGAAELRVHVIQCQGLXXXXXXX--SDPYVKGYLLPDK--QSKRKTTV 1095
V G V F+L YE L +HV +CQ L S+PYVK YLLPDK Q KRKT++
Sbjct: 356 VTGKVTFSLKYEQQTQTLVIHVKECQQLAYADEAKKHSNPYVKTYLLPDKSRQGKRKTSI 415
Query: 1096 KKRNLNPIFNETLRYSVPQAELQGRVLSLSVWHRESLGRNIFLGEVEVPLDTGNWDSE-P 1272
K+ +NP+++E L Y +P++ L R L SVWH GRN FLGE EV +D+ D +
Sbjct: 416 KRDTVNPLYDEILTYEIPESVLSQRTLKFSVWHHGRFGRNTFLGEAEVQMDSWMLDKKLD 475
Query: 1273 TWLPLQPRV-PPSPDALPS-RGLLSLSLKYIPAGSEGAGLPPSGELHFWVKEAQDLVPLR 1446
LPL ++ + LPS +G L +SLKYIPA G V + DLV
Sbjct: 476 HCLPLHGKISAEASTGLPSHKGELVVSLKYIPASKLPVGSDRKKSELKEVNQVNDLVEAV 535
Query: 1447 SGSLDTYIQCSVLPDDXXXXXXXXXXXXXXLNPMFNHTMVYDGFEPADLRQACAELSLWD 1626
S + +LP LNP +NHT VY+G DL+ C EL++WD
Sbjct: 536 DSSPPS--TRYLLPMRNKASKRKTPVMKKTLNPHYNHTFVYNGVRLEDLQHMCLELTVWD 593
Query: 1627 HGTLA-XXXXXXXXXXXXXXXXXXXXVPWMDSTPEEKQLWQTLLERPCEWVDGLLPLRTN 1803
LA V WMDST EE LWQ + + P W +G L LR +
Sbjct: 594 REPLASNDFLGGVRLGVGTGISNGEVVDWMDSTGEEVSLWQKMRQYPGSWAEGTLQLRAS 653
Query: 1804 LA 1809
+A
Sbjct: 654 MA 655
>ref|XP_003353214.1| PREDICTED: synaptotagmin-like protein 3 [Sus scrofa].
Length = 314
Score = 141 bits (356), Expect = 1e-33
Identities = 101/309 (32%), Positives = 144/309 (46%), Gaps = 20/309 (6%)
Frame = +1
Query: 928 VRGSVHFALHYEPGAAELRVHVIQCQGLXXXXXXXS--DPYVKGYLLPDK--QSKRKTTV 1095
V G + FA+ Y A L + + C+ L +PYVK YLLPD+ Q KRKT V
Sbjct: 9 VTGEIEFAIRYCFRAHSLEICIQACKNLAYGEEKKKKCNPYVKTYLLPDRSSQGKRKTGV 68
Query: 1096 KKRNLNPIFNETLRYSVPQAELQGRVLSLSVWHRESLGRNIFLGEVEVPLDTGNWDSEPT 1275
+K + P F ETL+Y V A+L R L +SVWH +L R +FLGEV VPL T +++ T
Sbjct: 69 QKNTVEPTFQETLKYQVEPAQLGTRQLQVSVWHLGTLARRVFLGEVIVPLATWDFEDSAT 128
Query: 1276 ----WLPLQPRVPPSPDAL-PSRGLLSLSLKYI--------PAGSEGAGLPPS--GELHF 1410
W PL+ + D++ PS G L++ K + P G G PS G+L
Sbjct: 129 QSFRWYPLRAKAEKCEDSVPPSNGELAVRAKLVLPTEPRKPPEAQGGTGDQPSQNGQLCL 188
Query: 1411 WVKEAQDLVPLRSGSLDTYIQ-CSVLPDDXXXXXXXXXXXXXXLNPMFNHTMVYDGFEPA 1587
V A++L G+L+++++ C LPD P + H+ V+ G P+
Sbjct: 189 VVLGAKNLPVRPDGTLNSFVKGCLTLPDQQRLRLKSPVLKKQAC-PQWKHSFVFKGVTPS 247
Query: 1588 DLRQACAELSLWDHGTLAXXXXXXXXXXXXXXXXXXXXVPWMDSTPEEKQLWQTLLERPC 1767
LRQ+ EL++WD T D+ P+ K WQ +L P
Sbjct: 248 QLRQSSLELTVWDQATFGVSDRLLGGARLGSKDEPAAGA---DACPQSKLQWQKVLSSPN 304
Query: 1768 EWVDGLLPL 1794
W D L L
Sbjct: 305 LWTDLTLTL 313
>ref|XP_003135282.2| PREDICTED: synaptotagmin-like protein 4-like [Sus scrofa].
Length = 594
Score = 115 bits (287), Expect = 1e-25
Identities = 70/159 (44%), Positives = 92/159 (57%), Gaps = 7/159 (4%)
Frame = +1
Query: 928 VRGSVHFALHYEPGAAELRVHVIQCQGLXXXXXXX--SDPYVKGYLLPDK--QSKRKTTV 1095
V G V F+L YE L +HV +CQ L S+PYVK YLLPDK Q KRKT++
Sbjct: 409 VTGKVTFSLKYEQQTQTLVIHVKECQQLAYADEAKKHSNPYVKTYLLPDKSRQGKRKTSI 468
Query: 1096 KKRNLNPIFNETLRYSVPQAELQGRVLSLSVWHRESLGRNIFLGEVEVPLDTGNWDSE-P 1272
K+ +NP+++E L Y +P++ L R L SVWH GRN FLGE EV +D+ D +
Sbjct: 469 KRDTVNPLYDEILTYEIPESVLSQRTLKFSVWHHGRFGRNTFLGEAEVQMDSWMLDKKLD 528
Query: 1273 TWLPLQPRV-PPSPDALPS-RGLLSLSLKYIPAGSEGAG 1383
LPL ++ + LPS +G L +SLKYIPA G
Sbjct: 529 HCLPLHGKISAEASTGLPSHKGELVVSLKYIPASKLPVG 567
>ref|XP_003130663.2| PREDICTED: synaptotagmin-2 [Sus scrofa].
Length = 417
Score = 101 bits (251), Expect = 2e-21
Identities = 67/216 (31%), Positives = 109/216 (50%), Gaps = 3/216 (1%)
Frame = +1
Query: 934 GSVHFALHYEPGAAELRVHVIQCQGLXXXXXXX-SDPYVKGYLLPDKQSKRKTTVKKRNL 1110
G + F+L Y+ A +L V V+Q L SDPYVK +LLPDK+ K +T V ++ L
Sbjct: 139 GKLQFSLDYDFQANQLTVGVLQAAELPALDMGGTSDPYVKVFLLPDKKKKYETKVHRKTL 198
Query: 1111 NPIFNETLRYSVPQAELQGRVLSLSVWHRESLGRNIFLGEVEVPLDTGNWDSE-PTWLPL 1287
NP FNET + VP EL G+ L ++++ + ++ +GEV+VP++T + W L
Sbjct: 199 NPAFNETFTFKVPYQELGGKTLVMAIYDFDRFSKHDIIGEVKVPMNTVDLGQPIEEWRDL 258
Query: 1288 QPRVPPSPDALPSRGLLSLSLKYIPAGSEGAGLPPSGELHFWVKEAQDLVPLRSGSL-DT 1464
Q P+ L G + SL+Y+P +G+L + EA++L + G L D
Sbjct: 259 QGGEKEEPEKL---GDICTSLRYVPT---------AGKLTVCILEAKNLKKMDVGGLSDP 306
Query: 1465 YIQCSVLPDDXXXXXXXXXXXXXXLNPMFNHTMVYD 1572
Y++ ++ + LNP FN + ++
Sbjct: 307 YVKIHLMQNGKRLKKKKTTVKKKTLNPYFNESFSFE 342
Score = 64.3 bits (155), Expect = 2e-10
Identities = 36/105 (34%), Positives = 62/105 (59%), Gaps = 3/105 (2%)
Frame = +1
Query: 934 GSVHFALHYEPGAAELRVHVIQCQGLXXXXXXX-SDPYVKGYLLPD--KQSKRKTTVKKR 1104
G + +L Y P A +L V +++ + L SDPYVK +L+ + + K+KTTVKK+
Sbjct: 270 GDICTSLRYVPTAGKLTVCILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTVKKK 329
Query: 1105 NLNPIFNETLRYSVPQAELQGRVLSLSVWHRESLGRNIFLGEVEV 1239
LNP FNE+ + +P ++Q + ++V + LG+N +G++ V
Sbjct: 330 TLNPYFNESFSFEIPFEQIQKVQVVVTVLDYDKLGKNEAIGKIFV 374
>ref|XP_003127416.1| PREDICTED: synaptotagmin-3 [Sus scrofa].
Length = 591
Score = 100 bits (249), Expect = 3e-21
Identities = 72/226 (31%), Positives = 109/226 (48%), Gaps = 2/226 (0%)
Frame = +1
Query: 901 GEAEAAAVQVRGSVHFALHYEPGAAELRVHVIQCQGLXXXXXXX-SDPYVKGYLLPDKQS 1077
G EA A G + FAL Y G+ +L V ++Q L SDPYVK YLLPD++
Sbjct: 291 GSGEAGAGAPCGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKK 350
Query: 1078 KRKTTVKKRNLNPIFNETLRYSVPQAELQGRVLSLSVWHRESLGRNIFLGEVEVPLDTGN 1257
K +T V ++ LNP+FNET ++SVP AEL R L SV+ + R+ +G+V + +
Sbjct: 351 KFQTKVHRKTLNPVFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLD-NLLE 409
Query: 1258 WDSEPTWLPLQPRVPPSPDALPSRGLLSLSLKYIPAGSEGAGLPPSGELHFWVKEAQDLV 1437
+P PL + G L+ SL Y LP +G L + +A +L
Sbjct: 410 LAEQPPDRPLWRDIVEGGSEKADLGELNFSLCY---------LPTAGRLTVTIIKASNLK 460
Query: 1438 PL-RSGSLDTYIQCSVLPDDXXXXXXXXXXXXXXLNPMFNHTMVYD 1572
+ +G D Y++ S++ + LNP +N +V+D
Sbjct: 461 AMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 506
Score = 64.7 bits (156), Expect = 2e-10
Identities = 42/128 (32%), Positives = 63/128 (49%), Gaps = 5/128 (3%)
Frame = +1
Query: 934 GSVHFALHYEPGAAELRVHVIQCQGLXXXXXXX-SDPYVKGYLLPD--KQSKRKTTVKKR 1104
G ++F+L Y P A L V +I+ L SDPYVK L+ + + KRKT++KK
Sbjct: 434 GELNFSLCYLPTAGRLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKN 493
Query: 1105 NLNPIFNETLRYSVPQAELQGRVLSLSVWHRESLGRNIFLGEVEVPLDTGNWDSEPTWLP 1284
LNP +NE L + V ++ LS++V + +G N +G V D + W
Sbjct: 494 TLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPDAADPHGREHWAE 553
Query: 1285 L--QPRVP 1302
+ PR P
Sbjct: 554 MLANPRKP 561
>ref|XP_003356112.1| PREDICTED: synaptotagmin-5-like isoform 2 [Sus scrofa].
Length = 385
Score = 97.4 bits (241), Expect = 2e-20
Identities = 72/239 (30%), Positives = 117/239 (48%), Gaps = 4/239 (1%)
Frame = +1
Query: 934 GSVHFALHYEPGAAELRVHVIQCQGLXXXXXXXS-DPYVKGYLLPDKQSKRKTTVKKRNL 1110
G + ++L Y+ + +L V ++Q +GL S DPYV+ YLLPDK+ + +T V ++ L
Sbjct: 110 GRLQYSLDYDFQSGQLLVGILQAEGLAALDLGGSSDPYVRVYLLPDKRRRYETKVHRQTL 169
Query: 1111 NPIFNETLRYSVPQAELQGRVLSLSVWHRESLGRNIFLGEVEVPLDTGNWDSEP-TWLPL 1287
NP F E + VP EL GRVL ++V+ + RN +GEV VP+ + + W L
Sbjct: 170 NPHFGENFAFKVPYVELGGRVLVMAVYDFDRFSRNDAIGEVRVPMSSVDLGRPVLAWREL 229
Query: 1288 QPRVPPSPDALPSRGLLSLSLKYIPAGSEGAGLPPSGELHFWVKEAQDLVPLRSGSL-DT 1464
Q +P G + SL+Y+P +G+L V EA++L + G L D
Sbjct: 230 Q----AAPREEEKLGDICFSLRYVPT---------AGKLTVIVLEAKNLKKMDVGGLSDP 276
Query: 1465 YIQCSVLPDDXXXXXXXXXXXXXXLNPMFNHTMVYDGFEPAD-LRQACAELSLWDHGTL 1638
Y++ +L LNP +N ++ P D +++ EL++ D+ L
Sbjct: 277 YVKVHLLQGGKKVRKKKTTIKKNTLNPYYNEAFSFE--VPCDQVQKVQVELTVLDYDKL 333
Score = 68.9 bits (167), Expect = 9e-12
Identities = 42/110 (38%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Frame = +1
Query: 934 GSVHFALHYEPGAAELRVHVIQCQGLXXXXXXX-SDPYVKGYLLPD--KQSKRKTTVKKR 1104
G + F+L Y P A +L V V++ + L SDPYVK +LL K K+KTT+KK
Sbjct: 240 GDICFSLRYVPTAGKLTVIVLEAKNLKKMDVGGLSDPYVKVHLLQGGKKVRKKKTTIKKN 299
Query: 1105 NLNPIFNETLRYSVPQAELQGRVLSLSVWHRESLGRNIFLGEVEVPLDTG 1254
LNP +NE + VP ++Q + L+V + LG+N +G V V G
Sbjct: 300 TLNPYYNEAFSFEVPCDQVQKVQVELTVLDYDKLGKNEAIGRVAVGAAAG 349
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.315 0.135 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 45,028,715
Number of extensions: 1422350
Number of successful extensions: 10506
Number of sequences better than 1.0e-05: 37
Number of HSP's gapped: 9578
Number of HSP's successfully gapped: 47
Length of query: 647
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 542
Effective length of database: 8,729,747
Effective search space: 4731522874
Effective search space used: 4731522874
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LVRM1_0039_H04
(1943 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 460 e-126
>Sscrofa_Chr06
|| Length = 157765593
Score = 460 bits (232), Expect = e-126
Identities = 232/232 (100%)
Strand = Plus / Plus
Query: 83 cagggagccacgtgtgcccagcgggggcaccgccccagctgatgccccagaggggccacc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78137694 cagggagccacgtgtgcccagcgggggcaccgccccagctgatgccccagaggggccacc 78137753
Query: 143 catctcaagaggggctccgggtcctgcctggcctcctcatggcacatgagccagagcctg 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78137754 catctcaagaggggctccgggtcctgcctggcctcctcatggcacatgagccagagcctg 78137813
Query: 203 aggctgatgggttactggacctcagcttcctgacggaggaggaacaggaagccattgctg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78137814 aggctgatgggttactggacctcagcttcctgacggaggaggaacaggaagccattgctg 78137873
Query: 263 aggtcctgaagcgagatgcccacctacggcagctggaggagggacgggtcag 314
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78137874 aggtcctgaagcgagatgcccacctacggcagctggaggagggacgggtcag 78137925
Score = 450 bits (227), Expect = e-123
Identities = 230/231 (99%)
Strand = Plus / Plus
Query: 1681 ggcagcagctacgggctccaggtgccctggatggactccacgcctgaggagaagcagctg 1740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78144179 ggcagcagctacgggctccaggtgccctggatggactccacgcctgaggagaagcagctg 78144238
Query: 1741 tggcagacgctcctggagcggccgtgcgagtgggtggacggccttctgcccctcagaacc 1800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78144239 tggcagacgctcctggagcggccgtgcgagtgggtggacggccttctgcccctcagaacc 78144298
Query: 1801 aacctggcccccaggacttagctgccctacaagccctacaaaacccctctctctggaccc 1860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78144299 aacctggcccccaggacttagctgccctacaagccctacaaaacccctctctctggaccc 78144358
Query: 1861 ccatctcagggcctgcccttggctaaagtcaataaagtctgttctgagggc 1911
||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 78144359 ccatctcagagcctgcccttggctaaagtcaataaagtctgttctgagggc 78144409
Score = 412 bits (208), Expect = e-112
Identities = 208/208 (100%)
Strand = Plus / Plus
Query: 1475 gctctgtgctgcctgatgacagccgggccagccgccagcggacgagggtggtgcgtcgca 1534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78143783 gctctgtgctgcctgatgacagccgggccagccgccagcggacgagggtggtgcgtcgca 78143842
Query: 1535 gcctcaaccccatgttcaatcacaccatggtttatgatggcttcgagcctgctgacctgc 1594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78143843 gcctcaaccccatgttcaatcacaccatggtttatgatggcttcgagcctgctgacctgc 78143902
Query: 1595 gccaggcctgtgccgagctctccctgtgggaccatgggaccctggccagtcgccaactgg 1654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78143903 gccaggcctgtgccgagctctccctgtgggaccatgggaccctggccagtcgccaactgg 78143962
Query: 1655 ggggcacacgcctcagcctgggcaccgg 1682
||||||||||||||||||||||||||||
Sbjct: 78143963 ggggcacacgcctcagcctgggcaccgg 78143990
Score = 313 bits (158), Expect = 2e-82
Identities = 161/162 (99%)
Strand = Plus / Plus
Query: 1137 gtactctgtcccgcaggctgagctccagggccgtgtgttgagcctatccgtgtggcaccg 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78142289 gtactctgtcccgcaggctgagctccagggccgtgtgttgagcctatccgtgtggcaccg 78142348
Query: 1197 cgaaagcctgggtcgcaacatctttctgggcgaagtagaagtgcccctggacacggggaa 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 78142349 cgaaagcctgggtcgcaacatctttctgggcgaagtagaagtgcccctggacacgtggaa 78142408
Query: 1257 ctgggactccgagcccacctggctccccctgcagcccagggt 1298
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78142409 ctgggactccgagcccacctggctccccctgcagcccagggt 78142450
Score = 305 bits (154), Expect = 5e-80
Identities = 154/154 (100%)
Strand = Plus / Plus
Query: 311 tcagaaagctccgggcatcactggaagaccctgggcagctgaagatcctaacaggggact 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78139430 tcagaaagctccgggcatcactggaagaccctgggcagctgaagatcctaacaggggact 78139489
Query: 371 ggttccaggaagcacgctcccagaggcaccaccacacccacctgggttctgacctagtcc 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78139490 ggttccaggaagcacgctcccagaggcaccaccacacccacctgggttctgacctagtcc 78139549
Query: 431 gagcctccatccgcagaaagaagggctccagggg 464
||||||||||||||||||||||||||||||||||
Sbjct: 78139550 gagcctccatccgcagaaagaagggctccagggg 78139583
Score = 274 bits (138), Expect = 2e-70
Identities = 138/138 (100%)
Strand = Plus / Plus
Query: 873 gctgagcggcagccagatgagcctgtcgggggaggcggaggcggcggcagtgcaggtgcg 932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78141398 gctgagcggcagccagatgagcctgtcgggggaggcggaggcggcggcagtgcaggtgcg 78141457
Query: 933 cggctccgtgcacttcgcgctgcactacgagcctggcgccgcggagctgcgcgtgcacgt 992
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78141458 cggctccgtgcacttcgcgctgcactacgagcctggcgccgcggagctgcgcgtgcacgt 78141517
Query: 993 gatccagtgccagggcct 1010
||||||||||||||||||
Sbjct: 78141518 gatccagtgccagggcct 78141535
Score = 230 bits (116), Expect = 2e-57
Identities = 122/124 (98%)
Strand = Plus / Plus
Query: 755 ctcagacccaggaggcgtccgagatcctggagaatggggaggaggccccggggcccgacc 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 78141043 ctcagacccaggaggcgtccgagatcctggagaatggggaggaggccccggggcctgacc 78141102
Query: 815 cctcactggaccgtatgctcagcagcagctcctccatgtccagcctcaactcctccacgc 874
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78141103 cctcactggaccgtatgctcagcagcagctcctccatgtccagcctcaactcctccacgg 78141162
Query: 875 tgag 878
||||
Sbjct: 78141163 tgag 78141166
Score = 210 bits (106), Expect = 2e-51
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 654 agcgcctgggccggcggacgttcaggtcccagccgcggaggaggcggacccggagccaaa 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78140796 agcgcctgggccggcggacgttcaggtcccagccgcggaggaggcggacccggagccaaa 78140855
Query: 714 gccgccgtcgggggcggaggaggagccgcagcccaggcctgctcag 759
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78140856 gccgccgtcgggggcggaggaggagccgcagcccaggcctgctcag 78140901
Score = 200 bits (101), Expect = 2e-48
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 1375 ggtgcaggactgcctccgagcggggagctgcacttctgggtgaaggaggctcaggacctt 1434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78142896 ggtgcaggactgcctccgagcggggagctgcacttctgggtgaaggaggctcaggacctt 78142955
Query: 1435 gtgcctctgcgctcaggatctctggatacttacatacaatg 1475
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 78142956 gtgcctctgcgctcaggatctctggatacttacatacaatg 78142996
Score = 184 bits (93), Expect = 1e-43
Identities = 96/97 (98%)
Strand = Plus / Plus
Query: 1041 ctacgtcaaaggctacctcctcccggataagcagagcaagcgcaagacaacagtgaagaa 1100
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78141853 ctacgtcaaaagctacctcctcccggataagcagagcaagcgcaagacaacagtgaagaa 78141912
Query: 1101 acggaatctgaacccgatcttcaacgagactctccgg 1137
|||||||||||||||||||||||||||||||||||||
Sbjct: 78141913 acggaatctgaacccgatcttcaacgagactctccgg 78141949
Score = 170 bits (86), Expect = 2e-39
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 1 ctgctcttctgctccctgaaactcagctgccaggggagccggggctgccctacgaagccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78135484 ctgctcttctgctccctgaaactcagctgccaggggagccggggctgccctacgaagccg 78135543
Query: 61 tcccctccatactggacccctacagg 86
||||||||||||||||||||||||||
Sbjct: 78135544 tcccctccatactggacccctacagg 78135569
Score = 157 bits (79), Expect = 3e-35
Identities = 82/83 (98%)
Strand = Plus / Plus
Query: 1296 ggtcccgccatctcccgatgcccttcccagccgcgggctgctctctctgtccctcaagta 1355
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78142708 ggtcccgccgtctcccgatgcccttcccagccgcgggctgctctctctgtccctcaagta 78142767
Query: 1356 catccccgccggctccgagggtg 1378
|||||||||||||||||||||||
Sbjct: 78142768 catccccgccggctccgagggtg 78142790
Score = 149 bits (75), Expect = 7e-33
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 463 ggagaccaggctcggggcagcaatggggaggctgaggctgctgggaaagagaccgaagag 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78139805 ggagaccaggctcggggcagcaatggggaggctgaggctgctgggaaagagaccgaagag 78139864
Query: 523 gcgctggagcccagg 537
|||||||||||||||
Sbjct: 78139865 gcgctggagcccagg 78139879
Score = 149 bits (75), Expect = 7e-33
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 581 agggacctgatttcccctcaccatatgtccccactaaggcatcagataatgaagaggagc 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78140473 agggacctgatttcccctcaccatatgtccccactaaggcatcagataatgaagaggagc 78140532
Query: 641 ccccggcccaggaag 655
|||||||||||||||
Sbjct: 78140533 ccccggcccaggaag 78140547
Score = 99.6 bits (50), Expect = 6e-18
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 534 caggctccccatagacaaggccccccaagagagtctcagcgaggctgagg 583
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78139958 caggctccccatagacaaggccccccaagagagtctcagcgaggctgagg 78140007
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 47,612,734
Number of extensions: 365
Number of successful extensions: 365
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 365
Number of HSP's successfully gapped: 15
Length of query: 1943
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1921
Effective length of database: 2,808,408,574
Effective search space: 5394952870654
Effective search space used: 5394952870654
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)