Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LVRM1_0067_B11
(1393 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001094632.1| tropomyosin alpha-4 chain [Bos taurus]. 312 5e-85
Alignment gi|NP_001011674.1| tropomyosin alpha-3 chain [Bos taurus]. 273 3e-73
Alignment gi|NP_001013608.1| tropomyosin alpha-1 chain [Bos taurus]. 271 1e-72
Alignment gi|NP_001010995.2| tropomyosin beta chain [Bos taurus]. 257 2e-68
Alignment gi|XP_002700658.1| PREDICTED: tropomyosin 2, beta-like [Bos tau... 172 5e-43
Alignment gi|XP_002699032.1| PREDICTED: tropomyosin 4-like [Bos taurus]. 140 2e-33
Alignment gi|XP_589950.1| PREDICTED: tropomyosin 4 isoform 1 [Bos taurus]. 140 2e-33
Alignment gi|XP_001255756.3| PREDICTED: tropomyosin 2, beta-like isoform ... 132 1e-30
Alignment gi|XP_002688284.1| PREDICTED: tropomyosin 4-like [Bos taurus]. 125 7e-29
Alignment gi|XP_001250860.3| PREDICTED: tropomyosin 4 [Bos taurus]. 125 7e-29
>ref|NP_001094632.1| tropomyosin alpha-4 chain [Bos taurus].
Length = 284
Score = 312 bits (799), Expect = 5e-85
Identities = 169/204 (82%), Positives = 171/204 (83%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLK TEDELDKY
Sbjct: 1 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKETEDELDKY 60
Query: 247 SENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SENLKDAQEKLEL++KKASDAEGDVAALNRRIQLVEEELDRAQER
Sbjct: 61 SENLKDAQEKLELTEKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELERAE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNL 678
VSELKCGDLEEELKNVTNNL
Sbjct: 181 ERAEVSELKCGDLEEELKNVTNNL 204
Score = 76.6 bits (187), Expect = 5e-14
Identities = 37/37 (100%), Positives = 37/37 (100%)
Frame = +2
Query: 806 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 916
KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI
Sbjct: 248 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 284
Score = 54.7 bits (130), Expect = 2e-07
Identities = 34/103 (33%), Positives = 58/103 (56%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 249
E + +K+ +L+ + E A +RAE +E EE+ K V L L+ + ++ DKY
Sbjct: 163 EEVARKLVILEGELERAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYE 222
Query: 250 ENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQE 378
E +K +KL+ ++ +A AE VA L + I +EE+L +A+E
Sbjct: 223 EEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKE 265
>ref|NP_001011674.1| tropomyosin alpha-3 chain [Bos taurus].
Length = 284
Score = 273 bits (698), Expect = 3e-73
Identities = 145/204 (71%), Positives = 164/204 (80%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
MEAIKKKMQMLKLDKENA+DRAEQAE+++K AEE+ KQ+E+EL +QKKLKGTEDELDKY
Sbjct: 1 MEAIKKKMQMLKLDKENALDRAEQAEAEQKQAEERSKQLEDELAAMQKKLKGTEDELDKY 60
Query: 247 SENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE LKDAQEKLEL++KKA+DAE +VA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIENRA+KDEEKME+QE+QLKEAKHIAEEADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNL 678
++E KC +LEEELKNVTNNL
Sbjct: 181 ERAELAESKCSELEEELKNVTNNL 204
Score = 56.2 bits (134), Expect = 7e-08
Identities = 33/98 (33%), Positives = 54/98 (55%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 249
E + +K+ +++ D E +RAE AES EE+ K V L L+ + + + DKY
Sbjct: 163 EEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYE 222
Query: 250 ENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 363
E +K +KL+ ++ +A AE VA L + I +E+EL
Sbjct: 223 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDEL 260
>ref|NP_001013608.1| tropomyosin alpha-1 chain [Bos taurus].
Length = 284
Score = 271 bits (693), Expect = 1e-72
Identities = 146/204 (71%), Positives = 162/204 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLK TEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKY 60
Query: 247 SENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE LKDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNL 678
+SE KC +LEEELK VTNNL
Sbjct: 181 ERAELSEGKCAELEEELKTVTNNL 204
Score = 53.9 bits (128), Expect = 3e-07
Identities = 31/98 (31%), Positives = 53/98 (54%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 249
E + +K+ +++ D E A +RAE +E EE+ K V L L+ + + + DKY
Sbjct: 163 EEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYE 222
Query: 250 ENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 363
E +K +KL+ ++ +A AE V L + I +E+EL
Sbjct: 223 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDEL 260
>ref|NP_001010995.2| tropomyosin beta chain [Bos taurus].
Length = 284
Score = 257 bits (657), Expect = 2e-68
Identities = 138/204 (67%), Positives = 158/204 (77%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+EEE LQKKLKGTEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 247 SENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE++KDAQEKLE ++KKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIENRAMKDEEKME+QEMQLKEAKHIAE++DRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNL 678
V+E + LEEEL+ + L
Sbjct: 181 ERAEVAESRARQLEEELRTMDQAL 204
Score = 54.3 bits (129), Expect = 3e-07
Identities = 31/98 (31%), Positives = 57/98 (58%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 249
E + +K+ +L+ + E + +RAE AES + EE+ + +++ L L + + DKY
Sbjct: 163 EEVARKLVILEGELERSEERAEVAESRARQLEEELRTMDQALKSLMASEEEYSTKEDKYE 222
Query: 250 ENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 363
E +K +EKL+ ++ +A AE VA L + I +E+E+
Sbjct: 223 EEIKLLEEKLKEAETRAEFAERSVAKLEKTIDDLEDEV 260
>ref|XP_002700658.1| PREDICTED: tropomyosin 2, beta-like [Bos taurus].
Length = 125
Score = 172 bits (437), Expect = 5e-43
Identities = 88/105 (83%), Positives = 99/105 (94%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLK TEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKY 60
Query: 247 SENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQER 381
SE LKDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQER 105
>ref|XP_002699032.1| PREDICTED: tropomyosin 4-like [Bos taurus].
Length = 248
Score = 140 bits (354), Expect = 2e-33
Identities = 76/159 (47%), Positives = 102/159 (64%)
Frame = +1
Query: 202 LQKKLKGTEDELDKYSENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQER 381
+++K++ + + D E + Q ++E + AE +VA+LNRRIQLVEEELDRAQER
Sbjct: 10 VKRKIQVLQQQADDAQERAERLQREVEGEGRAREQAEAEVASLNRRIQLVEEELDRAQER 69
Query: 382 XXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEV 561
RGMKVIEN+A+KDEEKME+QE+QLKEAKHIAEEADRKYEEV
Sbjct: 70 LATALQKLEEAEKAADESERGMKVIENQALKDEEKMELQEIQLKEAKHIAEEADRKYEEV 129
Query: 562 ARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNL 678
ARKLVI ++E +C +++E++K + NL
Sbjct: 130 ARKLVIIDGDLEGTEERAELAESRCREMDEQIKLMDQNL 168
Score = 49.3 bits (116), Expect = 8e-06
Identities = 31/103 (30%), Positives = 56/103 (54%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 249
E + +K+ ++ D E +RAE AES + +E+ K +++ L L + + DKY
Sbjct: 127 EEVARKLVIIDGDLEGTEERAELAESRCREMDEQIKLMDQNLKCLSAAEEKYSQKEDKYK 186
Query: 250 ENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQE 378
E +K +KL+ ++ +A AE VA L + I +E++L +E
Sbjct: 187 EEIKILTDKLKEAETRAEFAERLVAKLEKTIDDLEDKLKCTKE 229
>ref|XP_589950.1| PREDICTED: tropomyosin 4 isoform 1 [Bos taurus].
Length = 248
Score = 140 bits (354), Expect = 2e-33
Identities = 76/159 (47%), Positives = 102/159 (64%)
Frame = +1
Query: 202 LQKKLKGTEDELDKYSENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQER 381
+++K++ + + D E + Q ++E + AE +VA+LNRRIQLVEEELDRAQER
Sbjct: 10 VKRKIQVLQQQADDAQERAERLQREVEGEGRAREQAEAEVASLNRRIQLVEEELDRAQER 69
Query: 382 XXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEV 561
RGMKVIEN+A+KDEEKME+QE+QLKEAKHIAEEADRKYEEV
Sbjct: 70 LATALQKLEEAEKAADESERGMKVIENQALKDEEKMELQEIQLKEAKHIAEEADRKYEEV 129
Query: 562 ARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNL 678
ARKLVI ++E +C +++E++K + NL
Sbjct: 130 ARKLVIIDGDLEGTEERAELAESRCREMDEQIKLMDQNL 168
Score = 49.3 bits (116), Expect = 8e-06
Identities = 31/103 (30%), Positives = 56/103 (54%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 249
E + +K+ ++ D E +RAE AES + +E+ K +++ L L + + DKY
Sbjct: 127 EEVARKLVIIDGDLEGTEERAELAESRCREMDEQIKLMDQNLKCLSAAEEKYSQKEDKYK 186
Query: 250 ENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQE 378
E +K +KL+ ++ +A AE VA L + I +E++L +E
Sbjct: 187 EEIKILTDKLKEAETRAEFAERLVAKLEKTIDDLEDKLKCTKE 229
>ref|XP_001255756.3| PREDICTED: tropomyosin 2, beta-like isoform 1 [Bos taurus].
Length = 125
Score = 132 bits (331), Expect = 1e-30
Identities = 68/105 (64%), Positives = 86/105 (81%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+EE++ +K L+ +EDE D+
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEEDIAAKEKLLRVSEDERDRV 60
Query: 247 SENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQER 381
E L A++ L + + A+ AE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 LEELHKAEDSLLAADEAAAKAEADVASLNRRIQLVEEELDRAQER 105
>ref|XP_002688284.1| PREDICTED: tropomyosin 4-like [Bos taurus].
Length = 248
Score = 125 bits (315), Expect = 7e-29
Identities = 72/156 (46%), Positives = 94/156 (60%)
Frame = +1
Query: 211 KLKGTEDELDKYSENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERXXX 390
K++ + + D E K Q+K+E + AE +V +LNRRIQLVEEEL+RAQER
Sbjct: 13 KIQVLQQQADDAEERAKCLQQKVEGERWAREQAEAEVVSLNRRIQLVEEELNRAQERLAT 72
Query: 391 XXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARK 570
R MKVIEN+A+KDEEKME+QE+QLKEAKHIAEEA RKYEEVARK
Sbjct: 73 ELQKLEEAEKAADESERVMKVIENQALKDEEKMELQEIQLKEAKHIAEEAHRKYEEVARK 132
Query: 571 LVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNL 678
LVI ++E +C + E+ + + +L
Sbjct: 133 LVIIEGDLERTEERAELAESRCRKMGEQTRLMDQHL 168
>ref|XP_001250860.3| PREDICTED: tropomyosin 4 [Bos taurus].
Length = 248
Score = 125 bits (315), Expect = 7e-29
Identities = 72/156 (46%), Positives = 94/156 (60%)
Frame = +1
Query: 211 KLKGTEDELDKYSENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERXXX 390
K++ + + D E K Q+K+E + AE +V +LNRRIQLVEEEL+RAQER
Sbjct: 13 KIQVLQQQADDAEERAKCLQQKVEGERWAREQAEAEVVSLNRRIQLVEEELNRAQERLAT 72
Query: 391 XXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARK 570
R MKVIEN+A+KDEEKME+QE+QLKEAKHIAEEA RKYEEVARK
Sbjct: 73 ELQKLEEAEKAADESERVMKVIENQALKDEEKMELQEIQLKEAKHIAEEAHRKYEEVARK 132
Query: 571 LVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNL 678
LVI ++E +C + E+ + + +L
Sbjct: 133 LVIIEGDLERTEERAELAESRCRKMGEQTRLMDQHL 168
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,482,778
Number of extensions: 721993
Number of successful extensions: 4817
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 4519
Number of HSP's successfully gapped: 29
Length of query: 464
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 358
Effective length of database: 14,174,046
Effective search space: 5074308468
Effective search space used: 5074308468
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LVRM1_0067_B11
(1393 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001138632.1| tropomyosin alpha-4 chain isoform 1 [Homo sa... 311 1e-84
Alignment gi|NP_003280.2| tropomyosin beta chain isoform 1 [Homo sapiens]. 275 1e-73
Alignment gi|NP_001018005.1| tropomyosin alpha-1 chain isoform 1 [Homo sa... 273 2e-73
Alignment gi|NP_001018004.1| tropomyosin alpha-1 chain isoform 3 [Homo sa... 273 2e-73
Alignment gi|NP_689476.2| tropomyosin alpha-3 chain isoform 1 [Homo sapie... 273 3e-73
Alignment gi|NP_998839.1| tropomyosin beta chain isoform 2 [Homo sapiens]. 256 5e-68
Alignment gi|NP_000357.3| tropomyosin alpha-1 chain isoform 5 [Homo sapie... 255 8e-68
Alignment gi|NP_001018006.1| tropomyosin alpha-1 chain isoform 4 [Homo sa... 255 8e-68
Alignment gi|NP_001018007.1| tropomyosin alpha-1 chain isoform 2 [Homo sa... 231 1e-60
Alignment gi|NP_001018020.1| tropomyosin alpha-1 chain isoform 7 [Homo sa... 213 4e-55
>ref|NP_001138632.1| tropomyosin alpha-4 chain isoform 1 [Homo sapiens].
Length = 284
Score = 311 bits (796), Expect = 1e-84
Identities = 167/204 (81%), Positives = 172/204 (84%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
MEAIKKKMQMLKLDKENAIDRAEQAE+DKKAAE+KCKQVEEELTHLQKKLKGTEDELDKY
Sbjct: 1 MEAIKKKMQMLKLDKENAIDRAEQAEADKKAAEDKCKQVEEELTHLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE+LKDAQEKLEL++KKASDAEGDVAALNRRIQLVEEELDRAQER
Sbjct: 61 SEDLKDAQEKLELTEKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELERAE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNL 678
VSELKCGDLEEELKNVTNNL
Sbjct: 181 ERAEVSELKCGDLEEELKNVTNNL 204
Score = 76.6 bits (187), Expect = 5e-14
Identities = 37/37 (100%), Positives = 37/37 (100%)
Frame = +2
Query: 806 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 916
KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI
Sbjct: 248 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 284
Score = 54.7 bits (130), Expect = 2e-07
Identities = 34/103 (33%), Positives = 58/103 (56%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 249
E + +K+ +L+ + E A +RAE +E EE+ K V L L+ + ++ DKY
Sbjct: 163 EEVARKLVILEGELERAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYE 222
Query: 250 ENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQE 378
E +K +KL+ ++ +A AE VA L + I +EE+L +A+E
Sbjct: 223 EEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKE 265
>ref|NP_003280.2| tropomyosin beta chain isoform 1 [Homo sapiens].
Length = 284
Score = 275 bits (702), Expect = 1e-73
Identities = 146/204 (71%), Positives = 164/204 (80%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+EEE LQKKLKGTEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 247 SENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE++K+AQEKLE ++KKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SESVKEAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIENRAMKDEEKME+QEMQLKEAKHIAE++DRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNL 678
V+E KCGDLEEELK VTNNL
Sbjct: 181 ERAEVAESKCGDLEEELKIVTNNL 204
Score = 54.3 bits (129), Expect = 3e-07
Identities = 37/105 (35%), Positives = 58/105 (55%), Gaps = 7/105 (6%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 249
E + +K+ +L+ + E + +RAE AES KC +EEEL + LK E + DKYS
Sbjct: 163 EEVARKLVILEGELERSEERAEVAES-------KCGDLEEELKIVTNNLKSLEAQADKYS 215
Query: 250 -------ENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 363
E +K +EKL+ ++ +A AE VA L + I +E+E+
Sbjct: 216 TKEDKYEEEIKLLEEKLKEAETRAEFAERSVAKLEKTIDDLEDEV 260
>ref|NP_001018005.1| tropomyosin alpha-1 chain isoform 1 [Homo sapiens].
Length = 284
Score = 273 bits (699), Expect = 2e-73
Identities = 147/204 (72%), Positives = 163/204 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE LKDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNL 678
+SE KC +LEEELK VTNNL
Sbjct: 181 ERAELSEGKCAELEEELKTVTNNL 204
Score = 52.8 bits (125), Expect = 8e-07
Identities = 30/98 (30%), Positives = 53/98 (54%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 249
E + +K+ +++ D E A +RAE +E EE+ K V L L+ + + + D+Y
Sbjct: 163 EEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDRYE 222
Query: 250 ENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 363
E +K +KL+ ++ +A AE V L + I +E+EL
Sbjct: 223 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDEL 260
>ref|NP_001018004.1| tropomyosin alpha-1 chain isoform 3 [Homo sapiens].
Length = 284
Score = 273 bits (699), Expect = 2e-73
Identities = 147/204 (72%), Positives = 163/204 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE LKDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNL 678
+SE KC +LEEELK VTNNL
Sbjct: 181 ERAELSEGKCAELEEELKTVTNNL 204
Score = 57.0 bits (136), Expect = 4e-08
Identities = 27/35 (77%), Positives = 31/35 (88%)
Frame = +2
Query: 806 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 910
KLEK+IDDLEEK+A AKEEN+ +HQ LDQTL ELN
Sbjct: 248 KLEKSIDDLEEKVAHAKEENLSMHQMLDQTLLELN 282
Score = 54.3 bits (129), Expect = 3e-07
Identities = 31/103 (30%), Positives = 56/103 (54%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 249
E + +K+ +++ D E A +RAE +E EE+ K V L L+ + + + D+Y
Sbjct: 163 EEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDRYE 222
Query: 250 ENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQE 378
E +K +KL+ ++ +A AE V L + I +EE++ A+E
Sbjct: 223 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKE 265
>ref|NP_689476.2| tropomyosin alpha-3 chain isoform 1 [Homo sapiens].
Length = 285
Score = 273 bits (698), Expect = 3e-73
Identities = 145/204 (71%), Positives = 164/204 (80%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
MEAIKKKMQMLKLDKENA+DRAEQAE+++K AEE+ KQ+E+EL +QKKLKGTEDELDKY
Sbjct: 2 MEAIKKKMQMLKLDKENALDRAEQAEAEQKQAEERSKQLEDELAAMQKKLKGTEDELDKY 61
Query: 247 SENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE LKDAQEKLEL++KKA+DAE +VA+LNRRIQLVEEELDRAQER
Sbjct: 62 SEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 121
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIENRA+KDEEKME+QE+QLKEAKHIAEEADRKYEEVARKLVI
Sbjct: 122 DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTE 181
Query: 607 XXXXVSELKCGDLEEELKNVTNNL 678
++E KC +LEEELKNVTNNL
Sbjct: 182 ERAELAESKCSELEEELKNVTNNL 205
Score = 56.2 bits (134), Expect = 7e-08
Identities = 33/98 (33%), Positives = 54/98 (55%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 249
E + +K+ +++ D E +RAE AES EE+ K V L L+ + + + DKY
Sbjct: 164 EEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYE 223
Query: 250 ENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 363
E +K +KL+ ++ +A AE VA L + I +E+EL
Sbjct: 224 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDEL 261
>ref|NP_998839.1| tropomyosin beta chain isoform 2 [Homo sapiens].
Length = 284
Score = 256 bits (653), Expect = 5e-68
Identities = 137/204 (67%), Positives = 158/204 (77%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+EEE LQKKLKGTEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 247 SENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE++K+AQEKLE ++KKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SESVKEAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIENRAMKDEEKME+QEMQLKEAKHIAE++DRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNL 678
V+E + LEEEL+ + L
Sbjct: 181 ERAEVAESRARQLEEELRTMDQAL 204
Score = 60.1 bits (144), Expect = 5e-09
Identities = 30/35 (85%), Positives = 31/35 (88%)
Frame = +2
Query: 806 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 910
KLEKTIDDLEE LA AKEENV +HQTLDQTL ELN
Sbjct: 248 KLEKTIDDLEETLASAKEENVEIHQTLDQTLLELN 282
Score = 57.0 bits (136), Expect = 4e-08
Identities = 34/103 (33%), Positives = 59/103 (57%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 249
E + +K+ +L+ + E + +RAE AES + EE+ + +++ L L + + DKY
Sbjct: 163 EEVARKLVILEGELERSEERAEVAESRARQLEEELRTMDQALKSLMASEEEYSTKEDKYE 222
Query: 250 ENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQE 378
E +K +EKL+ ++ +A AE VA L + I +EE L A+E
Sbjct: 223 EEIKLLEEKLKEAETRAEFAERSVAKLEKTIDDLEETLASAKE 265
>ref|NP_000357.3| tropomyosin alpha-1 chain isoform 5 [Homo sapiens].
Length = 284
Score = 255 bits (651), Expect = 8e-68
Identities = 139/204 (68%), Positives = 158/204 (77%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE LKDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNL 678
+SE + LEE+L+ + L
Sbjct: 181 ERAELSEGQVRQLEEQLRIMDQTL 204
Score = 49.7 bits (117), Expect = 7e-06
Identities = 28/98 (28%), Positives = 53/98 (54%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 249
E + +K+ +++ D E A +RAE +E + EE+ + +++ L L + D+Y
Sbjct: 163 EEVARKLVIIESDLERAEERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDRYE 222
Query: 250 ENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 363
E +K +KL+ ++ +A AE V L + I +E+EL
Sbjct: 223 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDEL 260
>ref|NP_001018006.1| tropomyosin alpha-1 chain isoform 4 [Homo sapiens].
Length = 284
Score = 255 bits (651), Expect = 8e-68
Identities = 139/204 (68%), Positives = 158/204 (77%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE LKDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNL 678
+SE + LEE+L+ + L
Sbjct: 181 ERAELSEGQVRQLEEQLRIMDQTL 204
Score = 57.0 bits (136), Expect = 4e-08
Identities = 27/35 (77%), Positives = 31/35 (88%)
Frame = +2
Query: 806 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 910
KLEK+IDDLEEK+A AKEEN+ +HQ LDQTL ELN
Sbjct: 248 KLEKSIDDLEEKVAHAKEENLSMHQMLDQTLLELN 282
Score = 51.2 bits (121), Expect = 2e-06
Identities = 29/103 (28%), Positives = 56/103 (54%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 249
E + +K+ +++ D E A +RAE +E + EE+ + +++ L L + D+Y
Sbjct: 163 EEVARKLVIIESDLERAEERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDRYE 222
Query: 250 ENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQE 378
E +K +KL+ ++ +A AE V L + I +EE++ A+E
Sbjct: 223 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKE 265
>ref|NP_001018007.1| tropomyosin alpha-1 chain isoform 2 [Homo sapiens].
Length = 284
Score = 231 bits (589), Expect = 1e-60
Identities = 126/204 (61%), Positives = 150/204 (73%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+EE++ +K L+ +EDE D+
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEEDIAAKEKLLRVSEDERDRV 60
Query: 247 SENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
E L A++ L +++ A+ AE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 LEELHKAEDSLLAAEEAAAKAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNL 678
+SE KC +LEEELK VTNNL
Sbjct: 181 ERAELSEGKCAELEEELKTVTNNL 204
Score = 57.0 bits (136), Expect = 4e-08
Identities = 27/35 (77%), Positives = 31/35 (88%)
Frame = +2
Query: 806 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 910
KLEK+IDDLEEK+A AKEEN+ +HQ LDQTL ELN
Sbjct: 248 KLEKSIDDLEEKVAHAKEENLSMHQMLDQTLLELN 282
Score = 54.3 bits (129), Expect = 3e-07
Identities = 31/103 (30%), Positives = 56/103 (54%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 249
E + +K+ +++ D E A +RAE +E EE+ K V L L+ + + + D+Y
Sbjct: 163 EEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDRYE 222
Query: 250 ENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQE 378
E +K +KL+ ++ +A AE V L + I +EE++ A+E
Sbjct: 223 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKE 265
>ref|NP_001018020.1| tropomyosin alpha-1 chain isoform 7 [Homo sapiens].
Length = 284
Score = 213 bits (541), Expect = 4e-55
Identities = 118/204 (57%), Positives = 145/204 (71%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+EE++ +K L+ +EDE D+
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEEDIAAKEKLLRVSEDERDRV 60
Query: 247 SENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
E L A++ L +++ A+ AE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 LEELHKAEDSLLAAEEAAAKAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNL 678
+SE + LEE+L+ + L
Sbjct: 181 ERAELSEGQVRQLEEQLRIMDQTL 204
Score = 57.0 bits (136), Expect = 4e-08
Identities = 27/35 (77%), Positives = 31/35 (88%)
Frame = +2
Query: 806 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 910
KLEK+IDDLEEK+A AKEEN+ +HQ LDQTL ELN
Sbjct: 248 KLEKSIDDLEEKVAHAKEENLSMHQMLDQTLLELN 282
Score = 51.2 bits (121), Expect = 2e-06
Identities = 29/103 (28%), Positives = 56/103 (54%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 249
E + +K+ +++ D E A +RAE +E + EE+ + +++ L L + D+Y
Sbjct: 163 EEVARKLVIIESDLERAEERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDRYE 222
Query: 250 ENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQE 378
E +K +KL+ ++ +A AE V L + I +EE++ A+E
Sbjct: 223 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKE 265
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,461,503
Number of extensions: 737120
Number of successful extensions: 5654
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 5143
Number of HSP's successfully gapped: 52
Length of query: 464
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 358
Effective length of database: 14,802,980
Effective search space: 5299466840
Effective search space used: 5299466840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA LVRM1_0067_B11
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LVRM1_0067_B11
(1393 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033442.2| tropomyosin beta chain [Mus musculus]. 276 3e-74
Alignment gi|NP_001157727.1| tropomyosin alpha-1 chain isoform 9 [Mus mus... 273 2e-73
Alignment gi|NP_001157720.1| tropomyosin alpha-1 chain isoform 1 [Mus mus... 273 2e-73
Alignment gi|NP_077745.2| tropomyosin alpha-1 chain isoform 3 [Mus muscul... 273 2e-73
Alignment gi|NP_071709.2| tropomyosin alpha-3 chain [Mus musculus]. 255 5e-68
Alignment gi|NP_001157723.1| tropomyosin alpha-1 chain isoform 5 [Mus mus... 255 7e-68
Alignment gi|NP_001157722.1| tropomyosin alpha-1 chain isoform 4 [Mus mus... 255 7e-68
Alignment gi|NP_001157721.1| tropomyosin alpha-1 chain isoform 2 [Mus mus... 231 8e-61
Alignment gi|NP_001001491.1| tropomyosin alpha-4 chain [Mus musculus]. 167 2e-41
Alignment gi|NP_001157728.1| tropomyosin alpha-1 chain isoform 10 [Mus mu... 159 6e-39
>ref|NP_033442.2| tropomyosin beta chain [Mus musculus].
Length = 284
Score = 276 bits (706), Expect = 3e-74
Identities = 147/204 (72%), Positives = 164/204 (80%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+EEE LQKKLKGTEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 247 SENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE++KDAQEKLE ++KKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIENRAMKDEEKME+QEMQLKEAKHIAE++DRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNL 678
V+E KCGDLEEELK VTNNL
Sbjct: 181 ERAEVAESKCGDLEEELKIVTNNL 204
Score = 54.3 bits (129), Expect = 2e-07
Identities = 37/105 (35%), Positives = 58/105 (55%), Gaps = 7/105 (6%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 249
E + +K+ +L+ + E + +RAE AES KC +EEEL + LK E + DKYS
Sbjct: 163 EEVARKLVILEGELERSEERAEVAES-------KCGDLEEELKIVTNNLKSLEAQADKYS 215
Query: 250 -------ENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 363
E +K +EKL+ ++ +A AE VA L + I +E+E+
Sbjct: 216 TKEDKYEEEIKLLEEKLKEAETRAEFAERSVAKLEKTIDDLEDEV 260
>ref|NP_001157727.1| tropomyosin alpha-1 chain isoform 9 [Mus musculus].
Length = 281
Score = 273 bits (699), Expect = 2e-73
Identities = 147/204 (72%), Positives = 163/204 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE LKDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNL 678
+SE KC +LEEELK VTNNL
Sbjct: 181 ERAELSEGKCAELEEELKTVTNNL 204
Score = 52.8 bits (125), Expect = 7e-07
Identities = 30/98 (30%), Positives = 53/98 (54%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 249
E + +K+ +++ D E A +RAE +E EE+ K V L L+ + + + DKY
Sbjct: 163 EEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYE 222
Query: 250 ENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 363
E +K +KL+ ++ +A AE V L + I +E++L
Sbjct: 223 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDQL 260
>ref|NP_001157720.1| tropomyosin alpha-1 chain isoform 1 [Mus musculus].
Length = 284
Score = 273 bits (699), Expect = 2e-73
Identities = 147/204 (72%), Positives = 163/204 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE LKDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNL 678
+SE KC +LEEELK VTNNL
Sbjct: 181 ERAELSEGKCAELEEELKTVTNNL 204
Score = 53.9 bits (128), Expect = 3e-07
Identities = 31/98 (31%), Positives = 53/98 (54%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 249
E + +K+ +++ D E A +RAE +E EE+ K V L L+ + + + DKY
Sbjct: 163 EEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYE 222
Query: 250 ENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 363
E +K +KL+ ++ +A AE V L + I +E+EL
Sbjct: 223 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDEL 260
>ref|NP_077745.2| tropomyosin alpha-1 chain isoform 3 [Mus musculus].
Length = 284
Score = 273 bits (699), Expect = 2e-73
Identities = 147/204 (72%), Positives = 163/204 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE LKDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNL 678
+SE KC +LEEELK VTNNL
Sbjct: 181 ERAELSEGKCAELEEELKTVTNNL 204
Score = 57.0 bits (136), Expect = 3e-08
Identities = 27/35 (77%), Positives = 31/35 (88%)
Frame = +2
Query: 806 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 910
KLEK+IDDLEEK+A AKEEN+ +HQ LDQTL ELN
Sbjct: 248 KLEKSIDDLEEKVAHAKEENLSMHQMLDQTLLELN 282
Score = 55.5 bits (132), Expect = 1e-07
Identities = 32/103 (31%), Positives = 56/103 (54%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 249
E + +K+ +++ D E A +RAE +E EE+ K V L L+ + + + DKY
Sbjct: 163 EEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYE 222
Query: 250 ENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQE 378
E +K +KL+ ++ +A AE V L + I +EE++ A+E
Sbjct: 223 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKE 265
>ref|NP_071709.2| tropomyosin alpha-3 chain [Mus musculus].
Length = 284
Score = 255 bits (652), Expect = 5e-68
Identities = 134/204 (65%), Positives = 160/204 (78%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
MEAIKKKMQMLKLDKEN +DRAEQAE+++K AEE+ KQ+E+EL +QKKLKGTEDELDKY
Sbjct: 1 MEAIKKKMQMLKLDKENVLDRAEQAEAEQKQAEERSKQLEDELATMQKKLKGTEDELDKY 60
Query: 247 SENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE LKDAQEKLEL++KKA+DAE +VA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIENRA+KDEEKME+QE+QLKEAKHIAEEADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNL 678
++E +C +++E+++ + NL
Sbjct: 181 ERAELAESRCREMDEQIRLMDQNL 204
Score = 50.4 bits (119), Expect = 3e-06
Identities = 30/103 (29%), Positives = 57/103 (55%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 249
E + +K+ +++ D E +RAE AES + +E+ + +++ L L + + DKY
Sbjct: 163 EEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKYE 222
Query: 250 ENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQE 378
E +K +KL+ ++ +A AE VA L + I +E++L +E
Sbjct: 223 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKE 265
>ref|NP_001157723.1| tropomyosin alpha-1 chain isoform 5 [Mus musculus].
Length = 284
Score = 255 bits (651), Expect = 7e-68
Identities = 139/204 (68%), Positives = 158/204 (77%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE LKDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNL 678
+SE + LEE+L+ + L
Sbjct: 181 ERAELSEGQVRQLEEQLRIMDQTL 204
Score = 50.8 bits (120), Expect = 2e-06
Identities = 29/98 (29%), Positives = 53/98 (54%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 249
E + +K+ +++ D E A +RAE +E + EE+ + +++ L L + DKY
Sbjct: 163 EEVARKLVIIESDLERAEERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDKYE 222
Query: 250 ENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 363
E +K +KL+ ++ +A AE V L + I +E+EL
Sbjct: 223 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDEL 260
>ref|NP_001157722.1| tropomyosin alpha-1 chain isoform 4 [Mus musculus].
Length = 284
Score = 255 bits (651), Expect = 7e-68
Identities = 139/204 (68%), Positives = 158/204 (77%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE LKDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNL 678
+SE + LEE+L+ + L
Sbjct: 181 ERAELSEGQVRQLEEQLRIMDQTL 204
Score = 57.0 bits (136), Expect = 3e-08
Identities = 27/35 (77%), Positives = 31/35 (88%)
Frame = +2
Query: 806 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 910
KLEK+IDDLEEK+A AKEEN+ +HQ LDQTL ELN
Sbjct: 248 KLEKSIDDLEEKVAHAKEENLSMHQMLDQTLLELN 282
Score = 52.4 bits (124), Expect = 9e-07
Identities = 30/103 (29%), Positives = 56/103 (54%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 249
E + +K+ +++ D E A +RAE +E + EE+ + +++ L L + DKY
Sbjct: 163 EEVARKLVIIESDLERAEERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDKYE 222
Query: 250 ENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQE 378
E +K +KL+ ++ +A AE V L + I +EE++ A+E
Sbjct: 223 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKE 265
>ref|NP_001157721.1| tropomyosin alpha-1 chain isoform 2 [Mus musculus].
Length = 284
Score = 231 bits (590), Expect = 8e-61
Identities = 126/204 (61%), Positives = 149/204 (73%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+EE++ +K L+ +EDE D+
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEEDIAAKEKLLRASEDERDRV 60
Query: 247 SENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
E L A++ L + + A+ AE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 LEELHKAEDSLLAADETAAKAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNL 678
+SE KC +LEEELK VTNNL
Sbjct: 181 ERAELSEGKCAELEEELKTVTNNL 204
Score = 57.0 bits (136), Expect = 3e-08
Identities = 27/35 (77%), Positives = 31/35 (88%)
Frame = +2
Query: 806 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 910
KLEK+IDDLEEK+A AKEEN+ +HQ LDQTL ELN
Sbjct: 248 KLEKSIDDLEEKVAHAKEENLSMHQMLDQTLLELN 282
Score = 55.5 bits (132), Expect = 1e-07
Identities = 32/103 (31%), Positives = 56/103 (54%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 249
E + +K+ +++ D E A +RAE +E EE+ K V L L+ + + + DKY
Sbjct: 163 EEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYE 222
Query: 250 ENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQE 378
E +K +KL+ ++ +A AE V L + I +EE++ A+E
Sbjct: 223 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKE 265
>ref|NP_001001491.1| tropomyosin alpha-4 chain [Mus musculus].
Length = 248
Score = 167 bits (423), Expect = 2e-41
Identities = 91/162 (56%), Positives = 108/162 (66%)
Frame = +1
Query: 193 LTHLQKKLKGTEDELDKYSENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRA 372
L +++K++ + + D + + Q +L+ +++ AEGD AALNRRIQL+EEELDRA
Sbjct: 7 LEAVKRKIQALQQQADDAEDRAQGLQRELDGERERREKAEGDAAALNRRIQLLEEELDRA 66
Query: 373 QERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKY 552
QE+ RGMKVIENRAMKDEEKMEI EMQLKEAKHI +EADRKY
Sbjct: 67 QEQLATALQNLEEAEKAADESERGMKVIENRAMKDEEKMEILEMQLKEAKHITDEADRKY 126
Query: 553 EEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNL 678
EEVARKLVI VSELKCGDLEEELKNVTNNL
Sbjct: 127 EEVARKLVILEGELKRAEERAEVSELKCGDLEEELKNVTNNL 168
Score = 76.6 bits (187), Expect = 4e-14
Identities = 37/37 (100%), Positives = 37/37 (100%)
Frame = +2
Query: 806 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 916
KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI
Sbjct: 212 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 248
Score = 52.0 bits (123), Expect = 1e-06
Identities = 32/103 (31%), Positives = 58/103 (56%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 249
E + +K+ +L+ + + A +RAE +E EE+ K V L L+ + ++ DKY
Sbjct: 127 EEVARKLVILEGELKRAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYE 186
Query: 250 ENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQE 378
E +K +KL+ ++ +A AE V+ L + I +EE+L +A+E
Sbjct: 187 EEIKLLSDKLKEAETRAEFAERTVSKLEKTIDDLEEKLAQAKE 229
>ref|NP_001157728.1| tropomyosin alpha-1 chain isoform 10 [Mus musculus].
Length = 245
Score = 159 bits (401), Expect = 6e-39
Identities = 88/162 (54%), Positives = 105/162 (64%)
Frame = +1
Query: 193 LTHLQKKLKGTEDELDKYSENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRA 372
L +++K++ +++ D E Q +L+ +K AE DVA+LNRRIQLVEEELDRA
Sbjct: 7 LEAVRRKIRSLQEQADAAEERAGSLQRELDQERKLRETAEADVASLNRRIQLVEEELDRA 66
Query: 373 QERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKY 552
QER RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKY
Sbjct: 67 QERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKY 126
Query: 553 EEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNL 678
EEVARKLVI +SE KC +LEEELK VTNNL
Sbjct: 127 EEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNL 168
Score = 52.8 bits (125), Expect = 7e-07
Identities = 30/98 (30%), Positives = 53/98 (54%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 249
E + +K+ +++ D E A +RAE +E EE+ K V L L+ + + + DKY
Sbjct: 127 EEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYE 186
Query: 250 ENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 363
E +K +KL+ ++ +A AE V L + I +E++L
Sbjct: 187 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDQL 224
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,131,444
Number of extensions: 628143
Number of successful extensions: 4572
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 4204
Number of HSP's successfully gapped: 37
Length of query: 464
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 359
Effective length of database: 12,463,779
Effective search space: 4474496661
Effective search space used: 4474496661
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LVRM1_0067_B11
(1393 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_866127.1| PREDICTED: similar to tropomyosin 4 isoform 1 i... 315 7e-86
Alignment gi|XP_852641.1| PREDICTED: similar to tropomyosin 1, alpha isof... 315 7e-86
Alignment gi|XP_852943.1| PREDICTED: similar to Tropomyosin beta chain (T... 276 3e-74
Alignment gi|XP_866572.1| PREDICTED: similar to tropomyosin 2 (beta) isof... 276 3e-74
Alignment gi|XP_865307.1| PREDICTED: similar to Tropomyosin 1 alpha chain... 274 1e-73
Alignment gi|XP_864999.1| PREDICTED: similar to tropomyosin 1, alpha isof... 274 1e-73
Alignment gi|XP_864907.1| PREDICTED: similar to Tropomyosin 1 alpha chain... 274 1e-73
Alignment gi|XP_864888.1| PREDICTED: similar to Tropomyosin 1 alpha chain... 274 1e-73
Alignment gi|XP_864868.1| PREDICTED: similar to Tropomyosin 1 alpha chain... 274 1e-73
Alignment gi|XP_865847.1| PREDICTED: similar to tropomyosin 3, gamma isof... 273 3e-73
>ref|XP_866127.1| PREDICTED: similar to tropomyosin 4 isoform 1 isoform 5 [Canis
familiaris].
Length = 284
Score = 315 bits (807), Expect = 7e-86
Identities = 170/204 (83%), Positives = 172/204 (84%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY
Sbjct: 1 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SENLKDAQEKLEL++KKASDAEGDVAALNRRIQLVEEELDRAQER
Sbjct: 61 SENLKDAQEKLELTEKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELERAE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNL 678
VSELKCGDLEEELKNVTNNL
Sbjct: 181 ERAEVSELKCGDLEEELKNVTNNL 204
Score = 51.6 bits (122), Expect = 2e-06
Identities = 32/98 (32%), Positives = 54/98 (55%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 249
E + +K+ +L+ + E A +RAE +E EE+ K V L L+ + ++ DKY
Sbjct: 163 EEVARKLVILEGELERAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYE 222
Query: 250 ENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 363
E +K +KL+ ++ +A AE VA L + I +E+EL
Sbjct: 223 EEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEDEL 260
>ref|XP_852641.1| PREDICTED: similar to tropomyosin 1, alpha isoform 2 [Canis
familiaris].
Length = 284
Score = 315 bits (807), Expect = 7e-86
Identities = 170/204 (83%), Positives = 172/204 (84%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY
Sbjct: 1 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SENLKDAQEKLEL++KKASDAEGDVAALNRRIQLVEEELDRAQER
Sbjct: 61 SENLKDAQEKLELTEKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELERAE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNL 678
VSELKCGDLEEELKNVTNNL
Sbjct: 181 ERAEVSELKCGDLEEELKNVTNNL 204
Score = 76.6 bits (187), Expect = 5e-14
Identities = 37/37 (100%), Positives = 37/37 (100%)
Frame = +2
Query: 806 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 916
KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI
Sbjct: 248 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 284
Score = 54.7 bits (130), Expect = 2e-07
Identities = 34/103 (33%), Positives = 58/103 (56%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 249
E + +K+ +L+ + E A +RAE +E EE+ K V L L+ + ++ DKY
Sbjct: 163 EEVARKLVILEGELERAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYE 222
Query: 250 ENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQE 378
E +K +KL+ ++ +A AE VA L + I +EE+L +A+E
Sbjct: 223 EEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKE 265
>ref|XP_852943.1| PREDICTED: similar to Tropomyosin beta chain (Tropomyosin 2)
(Beta-tropomyosin) isoform 3 [Canis familiaris].
Length = 284
Score = 276 bits (706), Expect = 3e-74
Identities = 147/204 (72%), Positives = 164/204 (80%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+EEE LQKKLKGTEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 247 SENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE++KDAQEKLE ++KKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIENRAMKDEEKME+QEMQLKEAKHIAE++DRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNL 678
V+E KCGDLEEELK VTNNL
Sbjct: 181 ERAEVAESKCGDLEEELKIVTNNL 204
Score = 54.3 bits (129), Expect = 3e-07
Identities = 37/105 (35%), Positives = 58/105 (55%), Gaps = 7/105 (6%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 249
E + +K+ +L+ + E + +RAE AES KC +EEEL + LK E + DKYS
Sbjct: 163 EEVARKLVILEGELERSEERAEVAES-------KCGDLEEELKIVTNNLKSLEAQADKYS 215
Query: 250 -------ENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 363
E +K +EKL+ ++ +A AE VA L + I +E+E+
Sbjct: 216 TKEDKYEEEIKLLEEKLKEAETRAEFAERSVAKLEKTIDDLEDEV 260
>ref|XP_866572.1| PREDICTED: similar to tropomyosin 2 (beta) isoform 2 isoform 15
[Canis familiaris].
Length = 284
Score = 276 bits (706), Expect = 3e-74
Identities = 147/204 (72%), Positives = 164/204 (80%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+EEE LQKKLKGTEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 247 SENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE++KDAQEKLE ++KKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIENRAMKDEEKME+QEMQLKEAKHIAE++DRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNL 678
V+E KCGDLEEELK VTNNL
Sbjct: 181 ERAEVAESKCGDLEEELKIVTNNL 204
Score = 60.1 bits (144), Expect = 5e-09
Identities = 30/35 (85%), Positives = 31/35 (88%)
Frame = +2
Query: 806 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 910
KLEKTIDDLEE LA AKEENV +HQTLDQTL ELN
Sbjct: 248 KLEKTIDDLEETLASAKEENVEIHQTLDQTLLELN 282
Score = 55.8 bits (133), Expect = 9e-08
Identities = 36/103 (34%), Positives = 57/103 (55%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 249
E + +K+ +L+ + E + +RAE AES EE+ K V L L+ + + DKY
Sbjct: 163 EEVARKLVILEGELERSEERAEVAESKCGDLEEELKIVTNNLKSLEAQADKYSTKEDKYE 222
Query: 250 ENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQE 378
E +K +EKL+ ++ +A AE VA L + I +EE L A+E
Sbjct: 223 EEIKLLEEKLKEAETRAEFAERSVAKLEKTIDDLEETLASAKE 265
>ref|XP_865307.1| PREDICTED: similar to Tropomyosin 1 alpha chain (Alpha-tropomyosin)
isoform 26 [Canis familiaris].
Length = 284
Score = 274 bits (701), Expect = 1e-73
Identities = 147/204 (72%), Positives = 163/204 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE LKDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNL 678
+SE KC +LEEELK VTNNL
Sbjct: 181 ERAELSESKCAELEEELKTVTNNL 204
Score = 55.5 bits (132), Expect = 1e-07
Identities = 32/98 (32%), Positives = 54/98 (55%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 249
E + +K+ +++ D E A +RAE +ES EE+ K V L L+ + + + DKY
Sbjct: 163 EEVARKLVIIESDLERAEERAELSESKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYE 222
Query: 250 ENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 363
E +K +KL+ ++ +A AE V L + I +E+EL
Sbjct: 223 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDEL 260
>ref|XP_864999.1| PREDICTED: similar to tropomyosin 1, alpha isoform 11 [Canis
familiaris].
Length = 284
Score = 274 bits (701), Expect = 1e-73
Identities = 147/204 (72%), Positives = 163/204 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE LKDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNL 678
+SE KC +LEEELK VTNNL
Sbjct: 181 ERAELSESKCAELEEELKTVTNNL 204
Score = 57.0 bits (136), Expect = 4e-08
Identities = 33/103 (32%), Positives = 57/103 (55%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 249
E + +K+ +++ D E A +RAE +ES EE+ K V L L+ + + + DKY
Sbjct: 163 EEVARKLVIIESDLERAEERAELSESKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYE 222
Query: 250 ENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQE 378
E +K +KL+ ++ +A AE V L + I +EE++ A+E
Sbjct: 223 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKE 265
Score = 57.0 bits (136), Expect = 4e-08
Identities = 27/35 (77%), Positives = 31/35 (88%)
Frame = +2
Query: 806 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 910
KLEK+IDDLEEK+A AKEEN+ +HQ LDQTL ELN
Sbjct: 248 KLEKSIDDLEEKVAHAKEENLSMHQMLDQTLLELN 282
>ref|XP_864907.1| PREDICTED: similar to Tropomyosin 1 alpha chain (Alpha-tropomyosin)
isoform 6 [Canis familiaris].
Length = 284
Score = 274 bits (701), Expect = 1e-73
Identities = 147/204 (72%), Positives = 163/204 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE LKDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNL 678
+SE KC +LEEELK VTNNL
Sbjct: 181 ERAELSESKCAELEEELKTVTNNL 204
Score = 55.5 bits (132), Expect = 1e-07
Identities = 32/98 (32%), Positives = 54/98 (55%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 249
E + +K+ +++ D E A +RAE +ES EE+ K V L L+ + + + DKY
Sbjct: 163 EEVARKLVIIESDLERAEERAELSESKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYE 222
Query: 250 ENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 363
E +K +KL+ ++ +A AE V L + I +E+EL
Sbjct: 223 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDEL 260
>ref|XP_864888.1| PREDICTED: similar to Tropomyosin 1 alpha chain (Alpha-tropomyosin)
isoform 5 [Canis familiaris].
Length = 281
Score = 274 bits (701), Expect = 1e-73
Identities = 147/204 (72%), Positives = 163/204 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE LKDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNL 678
+SE KC +LEEELK VTNNL
Sbjct: 181 ERAELSESKCAELEEELKTVTNNL 204
Score = 54.7 bits (130), Expect = 2e-07
Identities = 32/104 (30%), Positives = 57/104 (54%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 249
E + +K+ +++ D E A +RAE +ES EE+ K V L L+ + + + DKY
Sbjct: 163 EEVARKLVIIESDLERAEERAELSESKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYE 222
Query: 250 ENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQER 381
E +K +KL+ ++ +A AE V L + I +E++L + E+
Sbjct: 223 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDQLYQQLEQ 266
>ref|XP_864868.1| PREDICTED: similar to Tropomyosin 1 alpha chain (Alpha-tropomyosin)
isoform 4 [Canis familiaris].
Length = 226
Score = 274 bits (701), Expect = 1e-73
Identities = 147/204 (72%), Positives = 163/204 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE LKDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNL 678
+SE KC +LEEELK VTNNL
Sbjct: 181 ERAELSESKCAELEEELKTVTNNL 204
>ref|XP_865847.1| PREDICTED: similar to tropomyosin 3, gamma isoform 20 [Canis
familiaris].
Length = 285
Score = 273 bits (698), Expect = 3e-73
Identities = 145/204 (71%), Positives = 164/204 (80%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
MEAIKKKMQMLKLDKENA+DRAEQAE+++K AEE+ KQ+E+EL +QKKLKGTEDELDKY
Sbjct: 2 MEAIKKKMQMLKLDKENALDRAEQAEAEQKQAEERSKQLEDELAAMQKKLKGTEDELDKY 61
Query: 247 SENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE LKDAQEKLEL++KKA+DAE +VA+LNRRIQLVEEELDRAQER
Sbjct: 62 SEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 121
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIENRA+KDEEKME+QE+QLKEAKHIAEEADRKYEEVARKLVI
Sbjct: 122 DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTE 181
Query: 607 XXXXVSELKCGDLEEELKNVTNNL 678
++E KC +LEEELKNVTNNL
Sbjct: 182 ERAELAESKCSELEEELKNVTNNL 205
Score = 55.5 bits (132), Expect = 1e-07
Identities = 33/103 (32%), Positives = 56/103 (54%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 249
E + +K+ +++ D E +RAE AES EE+ K V L L+ + + + DKY
Sbjct: 164 EEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYE 223
Query: 250 ENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQE 378
E +K +KL+ ++ +A AE VA L + I +E++L +E
Sbjct: 224 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKE 266
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,165,977
Number of extensions: 750578
Number of successful extensions: 6947
Number of sequences better than 1.0e-05: 83
Number of HSP's gapped: 5982
Number of HSP's successfully gapped: 198
Length of query: 464
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 358
Effective length of database: 15,340,888
Effective search space: 5492037904
Effective search space used: 5492037904
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LVRM1_0067_B11
(1393 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361667.1| PREDICTED: tropomyosin alpha-3 chain-like is... 273 2e-73
Alignment gi|NP_001090952.1| tropomyosin alpha-1 chain [Sus scrofa]. 267 1e-71
Alignment gi|XP_003361668.1| PREDICTED: tropomyosin alpha-3 chain-like is... 257 1e-68
Alignment gi|NP_001123419.1| tropomyosin beta chain [Sus scrofa]. 251 9e-67
Alignment gi|NP_999500.1| tropomyosin alpha-4 chain [Sus scrofa]. 177 1e-44
Alignment gi|NP_001001632.1| tropomyosin alpha-3 chain [Sus scrofa]. 142 3e-34
>ref|XP_003361667.1| PREDICTED: tropomyosin alpha-3 chain-like isoform 1 [Sus scrofa].
Length = 284
Score = 273 bits (698), Expect = 2e-73
Identities = 145/204 (71%), Positives = 164/204 (80%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
MEAIKKKMQMLKLDKENA+DRAEQAE+++K AEE+ KQ+E+EL +QKKLKGTEDELDKY
Sbjct: 1 MEAIKKKMQMLKLDKENALDRAEQAEAEQKQAEERSKQLEDELAAMQKKLKGTEDELDKY 60
Query: 247 SENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE LKDAQEKLEL++KKA+DAE +VA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIENRA+KDEEKME+QE+QLKEAKHIAEEADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNL 678
++E KC +LEEELKNVTNNL
Sbjct: 181 ERAELAESKCSELEEELKNVTNNL 204
Score = 56.2 bits (134), Expect = 4e-08
Identities = 33/98 (33%), Positives = 54/98 (55%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 249
E + +K+ +++ D E +RAE AES EE+ K V L L+ + + + DKY
Sbjct: 163 EEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYE 222
Query: 250 ENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 363
E +K +KL+ ++ +A AE VA L + I +E+EL
Sbjct: 223 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDEL 260
>ref|NP_001090952.1| tropomyosin alpha-1 chain [Sus scrofa].
Length = 284
Score = 267 bits (682), Expect = 1e-71
Identities = 144/204 (70%), Positives = 161/204 (78%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ K++E+EL LQKKLK TEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKRLEDELVSLQKKLKATEDELDKY 60
Query: 247 SENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE KDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEAPKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNL 678
+SE KC +LEEELK VTNNL
Sbjct: 181 ERAELSEGKCAELEEELKTVTNNL 204
Score = 53.9 bits (128), Expect = 2e-07
Identities = 31/98 (31%), Positives = 53/98 (54%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 249
E + +K+ +++ D E A +RAE +E EE+ K V L L+ + + + DKY
Sbjct: 163 EEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYE 222
Query: 250 ENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 363
E +K +KL+ ++ +A AE V L + I +E+EL
Sbjct: 223 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDEL 260
>ref|XP_003361668.1| PREDICTED: tropomyosin alpha-3 chain-like isoform 2 [Sus scrofa].
Length = 284
Score = 257 bits (656), Expect = 1e-68
Identities = 135/204 (66%), Positives = 161/204 (78%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
MEAIKKKMQMLKLDKENA+DRAEQAE+++K AEE+ KQ+E+EL +QKKLKGTEDELDKY
Sbjct: 1 MEAIKKKMQMLKLDKENALDRAEQAEAEQKQAEERSKQLEDELAAMQKKLKGTEDELDKY 60
Query: 247 SENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE LKDAQEKLEL++KKA+DAE +VA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIENRA+KDEEKME+QE+QLKEAKHIAEEADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNL 678
++E +C +++E+++ + NL
Sbjct: 181 ERAELAESRCREMDEQIRLMDQNL 204
Score = 51.2 bits (121), Expect = 1e-06
Identities = 30/98 (30%), Positives = 55/98 (56%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 249
E + +K+ +++ D E +RAE AES + +E+ + +++ L L + + DKY
Sbjct: 163 EEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKYE 222
Query: 250 ENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 363
E +K +KL+ ++ +A AE VA L + I +E+EL
Sbjct: 223 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDEL 260
>ref|NP_001123419.1| tropomyosin beta chain [Sus scrofa].
Length = 287
Score = 251 bits (640), Expect = 9e-67
Identities = 137/207 (66%), Positives = 158/207 (76%), Gaps = 3/207 (1%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+EEE LQKKLKGTEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 247 SENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE++KDAQEKLE ++KKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEI---QEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXX 597
RG+KVIENRAMKDEEKME+ QEMQLKEAKHIAE++DRKYEEVARKLVI
Sbjct: 121 DESERGLKVIENRAMKDEEKMELQEMQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELE 180
Query: 598 XXXXXXXVSELKCGDLEEELKNVTNNL 678
V+E + LEEEL+ + L
Sbjct: 181 RSEERAEVAESRARQLEEELRTMDQAL 207
Score = 60.1 bits (144), Expect = 3e-09
Identities = 30/35 (85%), Positives = 31/35 (88%)
Frame = +2
Query: 806 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 910
KLEKTIDDLEE LA AKEENV +HQTLDQTL ELN
Sbjct: 251 KLEKTIDDLEETLASAKEENVEIHQTLDQTLLELN 285
Score = 57.0 bits (136), Expect = 2e-08
Identities = 34/103 (33%), Positives = 59/103 (57%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 249
E + +K+ +L+ + E + +RAE AES + EE+ + +++ L L + + DKY
Sbjct: 166 EEVARKLVILEGELERSEERAEVAESRARQLEEELRTMDQALKSLMASEEEYSTKEDKYE 225
Query: 250 ENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQE 378
E +K +EKL+ ++ +A AE VA L + I +EE L A+E
Sbjct: 226 EEIKLLEEKLKEAETRAEFAERSVAKLEKTIDDLEETLASAKE 268
>ref|NP_999500.1| tropomyosin alpha-4 chain [Sus scrofa].
Length = 248
Score = 177 bits (450), Expect = 1e-44
Identities = 97/162 (59%), Positives = 112/162 (69%)
Frame = +1
Query: 193 LTHLQKKLKGTEDELDKYSENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRA 372
L +++K++ + + D+ + + Q +L+ +++ AEGDVAALNRRIQLVEEELDRA
Sbjct: 7 LEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVEEELDRA 66
Query: 373 QERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKY 552
QER RGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKY
Sbjct: 67 QERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKY 126
Query: 553 EEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNL 678
EEVARKLVI VSELKCGDLEEELKNVTNNL
Sbjct: 127 EEVARKLVILEGELERAEERAEVSELKCGDLEEELKNVTNNL 168
Score = 76.6 bits (187), Expect = 3e-14
Identities = 37/37 (100%), Positives = 37/37 (100%)
Frame = +2
Query: 806 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 916
KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI
Sbjct: 212 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 248
Score = 54.7 bits (130), Expect = 1e-07
Identities = 34/103 (33%), Positives = 58/103 (56%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 249
E + +K+ +L+ + E A +RAE +E EE+ K V L L+ + ++ DKY
Sbjct: 127 EEVARKLVILEGELERAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYE 186
Query: 250 ENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQE 378
E +K +KL+ ++ +A AE VA L + I +EE+L +A+E
Sbjct: 187 EEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKE 229
>ref|NP_001001632.1| tropomyosin alpha-3 chain [Sus scrofa].
Length = 248
Score = 142 bits (359), Expect = 3e-34
Identities = 76/159 (47%), Positives = 103/159 (64%)
Frame = +1
Query: 202 LQKKLKGTEDELDKYSENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQER 381
+++K++ + + D E + Q ++E ++ AE +VA+LNRRIQLVEEELDRAQER
Sbjct: 10 VKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVEEELDRAQER 69
Query: 382 XXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEV 561
RGMKVIENRA+KDEEKME+QE+QLKEAKHIAEEADRKYEEV
Sbjct: 70 LATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEV 129
Query: 562 ARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNL 678
ARKLVI ++E +C +++E+++ + NL
Sbjct: 130 ARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNL 168
Score = 50.4 bits (119), Expect = 2e-06
Identities = 30/103 (29%), Positives = 57/103 (55%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 249
E + +K+ +++ D E +RAE AES + +E+ + +++ L L + + DKY
Sbjct: 127 EEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKYE 186
Query: 250 ENLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQE 378
E +K +KL+ ++ +A AE VA L + I +E++L +E
Sbjct: 187 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKE 229
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,795,261
Number of extensions: 460656
Number of successful extensions: 2971
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2801
Number of HSP's successfully gapped: 16
Length of query: 464
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 362
Effective length of database: 8,804,438
Effective search space: 3187206556
Effective search space used: 3187206556
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LVRM1_0067_B11
(1393 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 1031 0.0
Sscrofa_Chr01 123 3e-25
gb|GL894998.2| Sus scrofa unplaced genomic scaffold ChrUScaf2882 84 2e-13
Sscrofa_Chr04 84 2e-13
Sscrofa_Chr13 70 4e-09
>Sscrofa_Chr02
|| Length = 162569375
Score = 1031 bits (520), Expect = 0.0
Identities = 534/541 (98%)
Strand = Plus / Plus
Query: 835 agaaaaacttgcccaggccaaagaagagaacgtgggcttacatcagacactggatcagac 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61172133 agaaaaacttgcccaggccaaagaagagaacgtgggcttacatcagacactggatcagac 61172192
Query: 895 actaaacgaactaaactgtatataaccaaaacagaagagtctcgttccatcagaaactcc 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61172193 actaaacgaactaaactgtatataaccaaaacagaagagtctcgttccatcagaaactcc 61172252
Query: 955 agagctacgtgtttttctcttctcttgtaagaagtttcttttgttattgcctctttgctt 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61172253 agagctacgtgtttttctcttctcttgtaagaagtttcttttgttattgcctctttgctt 61172312
Query: 1015 tgctggaaatgtcaagcaaattatgaatacgtgaccaaatattttgtatcagaaaagctt 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61172313 tgctggaaatgtcaagcaaattatgaatacgtgaccaaatattttgtatcagaaaagctt 61172372
Query: 1075 tgagcaccagttaaatctattccttccnnnnnnncaagtggcaccagctttttcagctct 1134
||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 61172373 tgagcaccagttaaatctattccttcctttttttcaagtggcaccagctttttcagctct 61172432
Query: 1135 atttttatccttaaattgcatttattcctaaagtaggcagggtatttcatattgagcata 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61172433 atttttatccttaaattgcatttattcctaaagtaggcagggtatttcatattgagcata 61172492
Query: 1195 ctctcttaagactgagggcatttggttcctgggagaatagacaaccccacactttaaaaa 1254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61172493 ctctcttaagactgagggcatttggttcctgggagaatagacaaccccacactttaaaaa 61172552
Query: 1255 tacagactccaatgtctagtcatgggtcaatttaaaaagttgaagaatatccactgctgg 1314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61172553 tacagactccaatgtctagtcatgggtcaatttaaaaagttgaagaatatccactgctgg 61172612
Query: 1315 tcacactataggaggccagggaccatcacattaaaatgagtggggattttccagccagag 1374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61172613 tcacactataggaggccagggaccatcacattaaaatgagtggggattttccagccagag 61172672
Query: 1375 t 1375
|
Sbjct: 61172673 t 61172673
Score = 355 bits (179), Expect = 4e-95
Identities = 182/183 (99%)
Strand = Plus / Plus
Query: 1 ctcgacaccgacgccgctgccgccgcaggcccctccacgcccacaccccctacccactgc 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61150668 ctcgaccccgacgccgctgccgccgcaggcccctccacgcccacaccccctacccactgc 61150727
Query: 61 ccagccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61150728 ccagccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgcc 61150787
Query: 121 atcgaccgggccgagcaggcggagtcggataagaaagctgctgaggagaagtgcaagcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61150788 atcgaccgggccgagcaggcggagtcggataagaaagctgctgaggagaagtgcaagcag 61150847
Query: 181 gtg 183
|||
Sbjct: 61150848 gtg 61150850
Score = 266 bits (134), Expect = 3e-68
Identities = 134/134 (100%)
Strand = Plus / Plus
Query: 307 gccgaaggggatgtagcagctctcaatcggcgcatccaactcgttgaggaggagttggac 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61161338 gccgaaggggatgtagcagctctcaatcggcgcatccaactcgttgaggaggagttggac 61161397
Query: 367 agggctcaggaacgactggccacagccctgcagaagcttgaggaggcagaaaaggctgca 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61161398 agggctcaggaacgactggccacagccctgcagaagcttgaggaggcagaaaaggctgca 61161457
Query: 427 gatgagagcgagag 440
||||||||||||||
Sbjct: 61161458 gatgagagcgagag 61161471
Score = 242 bits (122), Expect = 4e-61
Identities = 128/130 (98%)
Strand = Plus / Plus
Query: 178 caggtggaggaggagctgacgcacctccagaagaagctgaaggggacagaggatgagctg 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61156130 caggtggaggaggagctgacgcacctccagaagaagctgaaggggacagaggatgagctg 61156189
Query: 238 gacaaatactccgagaacctgaaggacgcgcaggaaaagctggagttgagcaagaagaaa 297
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 61156190 gacaaatactccgagaacctgaaggacgcgcaggaaaagctggagctgagcgagaagaaa 61156249
Query: 298 gcctccgacg 307
||||||||||
Sbjct: 61156250 gcctccgacg 61156259
Score = 242 bits (122), Expect = 4e-61
Identities = 122/122 (100%)
Strand = Plus / Plus
Query: 439 agaggaatgaaggtgatagaaaaccgggccatgaaagatgaggagaagatggagattcag 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61163820 agaggaatgaaggtgatagaaaaccgggccatgaaagatgaggagaagatggagattcag 61163879
Query: 499 gagatgcagctcaaagaggccaagcacattgccgaggaggccgaccgcaaatacgaggag 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61163880 gagatgcagctcaaagaggccaagcacattgccgaggaggccgaccgcaaatacgaggag 61163939
Query: 559 gt 560
||
Sbjct: 61163940 gt 61163941
Score = 151 bits (76), Expect = 1e-33
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 630 aaaatgtggtgacctggaagaagaactcaagaatgtcaccaacaacctgaagtcgctaga 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61165635 aaaatgtggtgacctggaagaagaactcaagaatgtcaccaacaacctgaagtcgctaga 61165694
Query: 690 ggctgcatctgaaaag 705
||||||||||||||||
Sbjct: 61165695 ggctgcatctgaaaag 61165710
Score = 145 bits (73), Expect = 7e-32
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 557 aggtagctcgtaagttggtcatcctggagggcgagctggagagggcagaggagcgtgccg 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61164502 aggtagctcgtaagttggtcatcctggagggcgagctggagagggcagaggagcgtgccg 61164561
Query: 617 aggtgtctgaact 629
|||||||||||||
Sbjct: 61164562 aggtgtctgaact 61164574
Score = 143 bits (72), Expect = 3e-31
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 765 aggctgagacccgtgctgaatttgcagagagaacagttgcaaaactggaaaagaccatcg 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61167561 aggctgagacccgtgctgaatttgcagagagaacagttgcaaaactggaaaagaccatcg 61167620
Query: 825 atgacctggaag 836
||||||||||||
Sbjct: 61167621 atgacctggaag 61167632
Score = 119 bits (60), Expect = 4e-24
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 704 agtattctgaaaaggaggataaatatgaagaagagattaaacttctgtctgacaaactga 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61167413 agtattctgaaaaggaggataaatatgaagaagagattaaacttctgtctgacaaactga 61167472
>Sscrofa_Chr01
|| Length = 315321322
Score = 123 bits (62), Expect = 3e-25
Identities = 107/122 (87%)
Strand = Plus / Minus
Query: 439 agaggaatgaaggtgatagaaaaccgggccatgaaagatgaggagaagatggagattcag 498
|||||||||||||| || |||||||| |||||||| |||||||| ||||||||| | |||
Sbjct: 264130765 agaggaatgaaggtcattgaaaaccgagccatgaaggatgaggaaaagatggagctgcag 264130706
Query: 499 gagatgcagctcaaagaggccaagcacattgccgaggaggccgaccgcaaatacgaggag 558
||||||||||| || |||||||||||||| || ||||| | ||||||||||| ||||||
Sbjct: 264130705 gagatgcagctgaaggaggccaagcacatcgctgaggattcagaccgcaaatatgaggag 264130646
Query: 559 gt 560
||
Sbjct: 264130645 gt 264130644
Score = 119 bits (60), Expect = 4e-24
Identities = 75/80 (93%)
Strand = Plus / Minus
Query: 65 ccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgccatcg 124
||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 264134556 ccatggatgccatcaagaagaagatgcagatgctaaagctggacaaggagaatgccatcg 264134497
Query: 125 accgggccgagcaggcggag 144
|||| || ||||||||||||
Sbjct: 264134496 accgtgctgagcaggcggag 264134477
Score = 99.6 bits (50), Expect = 4e-18
Identities = 101/118 (85%)
Strand = Plus / Minus
Query: 65 ccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgccatcg 124
||||||| |||||||||||||||||||| ||||| ||||| ||||||||||||||| | |
Sbjct: 120240068 ccatggacgccatcaagaagaagatgcaaatgctcaagctcgacaaggagaacgccttgg 120240009
Query: 125 accgggccgagcaggcggagtcggataagaaagctgctgaggagaagtgcaagcaggt 182
| || || |||||||||||| | |||||||| || || ||||| | | ||||||||||
Sbjct: 120240008 atcgagcggagcaggcggaggccgataagaaggcggcagaggacaggagcaagcaggt 120239951
Score = 91.7 bits (46), Expect = 1e-15
Identities = 67/74 (90%)
Strand = Plus / Minus
Query: 475 gatgaggagaagatggagattcaggagatgcagctcaaagaggccaagcacattgccgag 534
||||||||||| ||||| ||||||||||| ||||| ||||| |||||||||||||| |||
Sbjct: 120223826 gatgaggagaaaatggaaattcaggagatccagctgaaagaagccaagcacattgctgag 120223767
Query: 535 gaggccgaccgcaa 548
|| |||||||||||
Sbjct: 120223766 gatgccgaccgcaa 120223753
Score = 79.8 bits (40), Expect = 4e-12
Identities = 88/104 (84%)
Strand = Plus / Minus
Query: 337 cgcatccaactcgttgaggaggagttggacagggctcaggaacgactggccacagccctg 396
||||||||||| |||||||| ||| ||||| | || ||||| |||||||| ||||| |
Sbjct: 120225997 cgcatccaactggttgaggaagagctggaccgtgcccaggagcgactggcaacagcttta 120225938
Query: 397 cagaagcttgaggaggcagaaaaggctgcagatgagagcgagag 440
||||| ||||||||||| || ||||| ||||||||||| |||||
Sbjct: 120225937 cagaaacttgaggaggctgagaaggcagcagatgagagtgagag 120225894
Score = 77.8 bits (39), Expect = 1e-11
Identities = 72/83 (86%)
Strand = Plus / Minus
Query: 352 gaggaggagttggacagggctcaggaacgactggccacagccctgcagaagcttgaggag 411
||||||||| ||||| |||| ||||| || ||||||||||||||||| ||||| ||||||
Sbjct: 264130944 gaggaggagctggaccgggcgcaggagcgtctggccacagccctgcaaaagctggaggag 264130885
Query: 412 gcagaaaaggctgcagatgagag 434
|| || ||||| || ||||||||
Sbjct: 264130884 gccgagaaggcagctgatgagag 264130862
>gb|GL894998.2| Sus scrofa unplaced genomic scaffold ChrUScaf2882
Length = 79217
Score = 83.8 bits (42), Expect = 2e-13
Identities = 48/50 (96%)
Strand = Plus / Minus
Query: 67 atggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaa 116
||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 15261 atggaggccatcaagaaaaagatgcagatgctgaagttggacaaggagaa 15212
Score = 65.9 bits (33), Expect = 6e-08
Identities = 84/101 (83%)
Strand = Plus / Minus
Query: 340 atccaactcgttgaggaggagttggacagggctcaggaacgactggccacagccctgcag 399
||||| || ||||| |||||| ||||| | ||||| || || |||||||| ||||||||
Sbjct: 2061 atccagctggttgaagaggagctggaccgcgctcaagagcgcctggccactgccctgcaa 2002
Query: 400 aagcttgaggaggcagaaaaggctgcagatgagagcgagag 440
||||| ||||| || || || ||||| ||||||||||||||
Sbjct: 2001 aagctggaggaagctgagaaagctgctgatgagagcgagag 1961
Score = 60.0 bits (30), Expect = 3e-06
Identities = 66/78 (84%)
Strand = Plus / Minus
Query: 205 cagaagaagctgaaggggacagaggatgagctggacaaatactccgagaacctgaaggac 264
|||||||| || || |||||||||||||||||||||||||| || || ||||||||
Sbjct: 14331 cagaagaaactaaaagggacagaggatgagctggacaaatattctgaagctctgaaggat 14272
Query: 265 gcgcaggaaaagctggag 282
|| ||||| |||||||||
Sbjct: 14271 gcccaggagaagctggag 14254
>Sscrofa_Chr04
|| Length = 143465943
Score = 83.8 bits (42), Expect = 2e-13
Identities = 48/50 (96%)
Strand = Plus / Plus
Query: 67 atggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaa 116
||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 104459762 atggaggccatcaagaaaaagatgcagatgctgaagttggacaaggagaa 104459811
Score = 65.9 bits (33), Expect = 6e-08
Identities = 84/101 (83%)
Strand = Plus / Plus
Query: 340 atccaactcgttgaggaggagttggacagggctcaggaacgactggccacagccctgcag 399
||||| || ||||| |||||| ||||| | ||||| || || |||||||| ||||||||
Sbjct: 104473286 atccagctggttgaagaggagctggaccgcgctcaagagcgcctggccactgccctgcaa 104473345
Query: 400 aagcttgaggaggcagaaaaggctgcagatgagagcgagag 440
||||| ||||| || || || ||||| ||||||||||||||
Sbjct: 104473346 aagctggaggaagctgagaaagctgctgatgagagcgagag 104473386
Score = 60.0 bits (30), Expect = 3e-06
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 205 cagaagaagctgaaggggacagaggatgagctggacaaatactccgagaacctgaaggac 264
|||||||| || || |||||||||||||||||||||||||| || || ||||||||
Sbjct: 104460513 cagaagaaactaaaagggacagaggatgagctggacaaatattctgaagctctgaaggat 104460572
Query: 265 gcgcaggaaaagctggag 282
|| ||||| |||||||||
Sbjct: 104460573 gcccaggagaagctggag 104460590
>Sscrofa_Chr13
|| Length = 218635234
Score = 69.9 bits (35), Expect = 4e-09
Identities = 128/159 (80%)
Strand = Plus / Plus
Query: 382 ctggccacagccctgcagaagcttgaggaggcagaaaaggctgcagatgagagcgagaga 441
|||||||| || ||||| ||||| || || ||||| || ||||| || ||||| ||||||
Sbjct: 43190661 ctggccactgctctgcaaaagctggaagaagcagagaaagctgctgacgagagtgagaga 43190720
Query: 442 ggaatgaaggtgatagaaaaccgggccatgaaagatgaggagaagatggagattcaggag 501
|| |||||||| || |||||| | ||| | ||||||||||| || ||||| | |||||
Sbjct: 43190721 ggtatgaaggttattgaaaactgagccttaaaagatgaggaaaaaatggaagtacaggaa 43190780
Query: 502 atgcagctcaaagaggccaagcacattgccgaggaggcc 540
|| || |||||||| || ||| ||||||| || ||||||
Sbjct: 43190781 atccaactcaaagaagctaagtacattgcagaagaggcc 43190819
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 47,310,295
Number of extensions: 391
Number of successful extensions: 391
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 390
Number of HSP's successfully gapped: 22
Length of query: 1393
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1372
Effective length of database: 2,808,413,156
Effective search space: 3853142850032
Effective search space used: 3853142850032
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)