Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LVRM1_0096_B09
(1901 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001012680.1| 4F2 cell-surface antigen heavy chain isoform... 670 0.0
Alignment gi|NP_001012682.1| 4F2 cell-surface antigen heavy chain isoform... 670 0.0
Alignment gi|NP_002385.3| 4F2 cell-surface antigen heavy chain isoform c ... 670 0.0
Alignment gi|NP_001013269.1| 4F2 cell-surface antigen heavy chain isoform... 663 0.0
Alignment gi|NP_000332.2| neutral and basic amino acid transport protein ... 71 4e-12
>ref|NP_001012680.1| 4F2 cell-surface antigen heavy chain isoform b [Homo sapiens].
Length = 631
Score = 670 bits (1729), Expect = 0.0
Identities = 362/538 (67%), Positives = 391/538 (72%), Gaps = 7/538 (1%)
Frame = +3
Query: 126 AGSAGTMSQDTEVDMKEVELNELEPEKQPMNXXXXXXXXXXXXPEKNGLVKIKVXXXXXX 305
AG GTMSQDTEVDMKEVELNELEPEKQPMN EKNGLVKIKV
Sbjct: 97 AGITGTMSQDTEVDMKEVELNELEPEKQPMNAASGAAMSLAGA-EKNGLVKIKVAEDEAE 155
Query: 306 XXXX-KFTGLSKEELLKVAGSPGWVRTRXXXXXXXXXXXXXXXXXXVVIIVQAPRCRELP 482
KFTGLSKEELLKVAGSPGWVRTR VVIIV+APRCRELP
Sbjct: 156 AAAAAKFTGLSKEELLKVAGSPGWVRTRWALLLLFWLGWLGMLAGAVVIIVRAPRCRELP 215
Query: 483 AQSWWHKGALYRIGDLQAFQGRDAGDLASLKGHLDYLSTLKVKGFVLGPIHKHQKDDLAG 662
AQ WWH GALYRIGDLQAFQG AG+LA LKG LDYLS+LKVKG VLGPIHK+QKDD+A
Sbjct: 216 AQKWWHTGALYRIGDLQAFQGHGAGNLAGLKGRLDYLSSLKVKGLVLGPIHKNQKDDVAQ 275
Query: 663 TDLEQIDPAFGSKEDFDSLLQSAKKKSIRVILDLTPNYKGQNSWFDSTQVDTVAAKMKEA 842
TDL QIDP FGSKEDFDSLLQSAKKKSIRVILDLTPNY+G+NSWF STQVDTVA K+K+A
Sbjct: 276 TDLLQIDPNFGSKEDFDSLLQSAKKKSIRVILDLTPNYRGENSWF-STQVDTVATKVKDA 334
Query: 843 LSFWLQAGVDGFQVRDMGDLPGASSFLAEWQNLTKSFSEDRLLIAGTXXXXXXXXXXXXE 1022
L FWLQAGVDGFQVRD+ +L ASSFLAEWQN+TK FSEDRLLIAGT E
Sbjct: 335 LEFWLQAGVDGFQVRDIENLKDASSFLAEWQNITKGFSEDRLLIAGTNSSDLQQILSLLE 394
Query: 1023 PTKDXXXXXXXXXXXXFTGKQTSFLVTQYLNATGSRWCSWSLSQAGLLTSSVPSHXXXXX 1202
KD TG+ T LVTQYLNATG+RWCSWSLSQA LLTS +P+
Sbjct: 395 SNKDLLLTSSYLSDSGSTGEHTKSLVTQYLNATGNRWCSWSLSQARLLTSFLPAQLLRLY 454
Query: 1203 XXXXXXXPGTPVFSYGDEIGLEEAVLPGQPVKAPVMPWDESSLPSTLGPVNSSSVTVKGR 1382
PGTPVFSYGDEIGL+ A LPGQP++APVM WDESS P G V S+++TVKG+
Sbjct: 455 QLMLFTLPGTPVFSYGDEIGLDAAALPGQPMEAPVMLWDESSFPDIPGAV-SANMTVKGQ 513
Query: 1383 SGDPGSLLSLFRWLSDLRGKERSLLHGDFHALSSGPDLFSYIRQWDQNERFLIVLNFGDV 1562
S DPGSLLSLFR LSD R KERSLLHGDFHA S+GP LFSYIR WDQNERFL+VLNFGDV
Sbjct: 514 SEDPGSLLSLFRRLSDQRSKERSLLHGDFHAFSAGPGLFSYIRHWDQNERFLVVLNFGDV 573
Query: 1563 GQPARLGA------XXXXXXXXXXXXTQPGRKEGTPLQLEHLNLEPYEGLLLRFPYVA 1718
G A L A TQPGR+EG+PL+LE L LEP+EGLLLRFPY A
Sbjct: 574 GLSAGLQASDLPASASLPAKADLLLSTQPGREEGSPLELERLKLEPHEGLLLRFPYAA 631
>ref|NP_001012682.1| 4F2 cell-surface antigen heavy chain isoform e [Homo sapiens].
Length = 568
Score = 670 bits (1728), Expect = 0.0
Identities = 365/557 (65%), Positives = 397/557 (71%), Gaps = 7/557 (1%)
Frame = +3
Query: 69 GRSGQVGVQQLADRRLRRVAGSAGTMSQDTEVDMKEVELNELEPEKQPMNXXXXXXXXXX 248
G + GVQ L+ +GTMSQDTEVDMKEVELNELEPEKQPMN
Sbjct: 21 GSHSEAGVQGLS------AGDDSGTMSQDTEVDMKEVELNELEPEKQPMNAASGAAMSLA 74
Query: 249 XXPEKNGLVKIKVXXXXXXXXXX-KFTGLSKEELLKVAGSPGWVRTRXXXXXXXXXXXXX 425
EKNGLVKIKV KFTGLSKEELLKVAGSPGWVRTR
Sbjct: 75 GA-EKNGLVKIKVAEDEAEAAAAAKFTGLSKEELLKVAGSPGWVRTRWALLLLFWLGWLG 133
Query: 426 XXXXXVVIIVQAPRCRELPAQSWWHKGALYRIGDLQAFQGRDAGDLASLKGHLDYLSTLK 605
VVIIV+APRCRELPAQ WWH GALYRIGDLQAFQG AG+LA LKG LDYLS+LK
Sbjct: 134 MLAGAVVIIVRAPRCRELPAQKWWHTGALYRIGDLQAFQGHGAGNLAGLKGRLDYLSSLK 193
Query: 606 VKGFVLGPIHKHQKDDLAGTDLEQIDPAFGSKEDFDSLLQSAKKKSIRVILDLTPNYKGQ 785
VKG VLGPIHK+QKDD+A TDL QIDP FGSKEDFDSLLQSAKKKSIRVILDLTPNY+G+
Sbjct: 194 VKGLVLGPIHKNQKDDVAQTDLLQIDPNFGSKEDFDSLLQSAKKKSIRVILDLTPNYRGE 253
Query: 786 NSWFDSTQVDTVAAKMKEALSFWLQAGVDGFQVRDMGDLPGASSFLAEWQNLTKSFSEDR 965
NSWF STQVDTVA K+K+AL FWLQAGVDGFQVRD+ +L ASSFLAEWQN+TK FSEDR
Sbjct: 254 NSWF-STQVDTVATKVKDALEFWLQAGVDGFQVRDIENLKDASSFLAEWQNITKGFSEDR 312
Query: 966 LLIAGTXXXXXXXXXXXXEPTKDXXXXXXXXXXXXFTGKQTSFLVTQYLNATGSRWCSWS 1145
LLIAGT E KD TG+ T LVTQYLNATG+RWCSWS
Sbjct: 313 LLIAGTNSSDLQQILSLLESNKDLLLTSSYLSDSGSTGEHTKSLVTQYLNATGNRWCSWS 372
Query: 1146 LSQAGLLTSSVPSHXXXXXXXXXXXXPGTPVFSYGDEIGLEEAVLPGQPVKAPVMPWDES 1325
LSQA LLTS +P+ PGTPVFSYGDEIGL+ A LPGQP++APVM WDES
Sbjct: 373 LSQARLLTSFLPAQLLRLYQLMLFTLPGTPVFSYGDEIGLDAAALPGQPMEAPVMLWDES 432
Query: 1326 SLPSTLGPVNSSSVTVKGRSGDPGSLLSLFRWLSDLRGKERSLLHGDFHALSSGPDLFSY 1505
S P G V S+++TVKG+S DPGSLLSLFR LSD R KERSLLHGDFHA S+GP LFSY
Sbjct: 433 SFPDIPGAV-SANMTVKGQSEDPGSLLSLFRRLSDQRSKERSLLHGDFHAFSAGPGLFSY 491
Query: 1506 IRQWDQNERFLIVLNFGDVGQPARLGA------XXXXXXXXXXXXTQPGRKEGTPLQLEH 1667
IR WDQNERFL+VLNFGDVG A L A TQPGR+EG+PL+LE
Sbjct: 492 IRHWDQNERFLVVLNFGDVGLSAGLQASDLPASASLPAKADLLLSTQPGREEGSPLELER 551
Query: 1668 LNLEPYEGLLLRFPYVA 1718
L LEP+EGLLLRFPY A
Sbjct: 552 LKLEPHEGLLLRFPYAA 568
>ref|NP_002385.3| 4F2 cell-surface antigen heavy chain isoform c [Homo sapiens].
Length = 630
Score = 670 bits (1728), Expect = 0.0
Identities = 370/582 (63%), Positives = 408/582 (70%), Gaps = 11/582 (1%)
Frame = +3
Query: 6 AADVVTEAARNPAALGGRSGTGRSGQVGVQQLADRRLRRVAGS----AGTMSQDTEVDMK 173
+ D + A++N + +G+ Q G+Q LA +A GTMSQDTEVDMK
Sbjct: 54 SGDPLPSASQNAEMI--ETGSDCVTQAGLQLLASSDPPALASKNAEVTGTMSQDTEVDMK 111
Query: 174 EVELNELEPEKQPMNXXXXXXXXXXXXPEKNGLVKIKVXXXXXXXXXX-KFTGLSKEELL 350
EVELNELEPEKQPMN EKNGLVKIKV KFTGLSKEELL
Sbjct: 112 EVELNELEPEKQPMNAASGAAMSLAGA-EKNGLVKIKVAEDEAEAAAAAKFTGLSKEELL 170
Query: 351 KVAGSPGWVRTRXXXXXXXXXXXXXXXXXXVVIIVQAPRCRELPAQSWWHKGALYRIGDL 530
KVAGSPGWVRTR VVIIV+APRCRELPAQ WWH GALYRIGDL
Sbjct: 171 KVAGSPGWVRTRWALLLLFWLGWLGMLAGAVVIIVRAPRCRELPAQKWWHTGALYRIGDL 230
Query: 531 QAFQGRDAGDLASLKGHLDYLSTLKVKGFVLGPIHKHQKDDLAGTDLEQIDPAFGSKEDF 710
QAFQG AG+LA LKG LDYLS+LKVKG VLGPIHK+QKDD+A TDL QIDP FGSKEDF
Sbjct: 231 QAFQGHGAGNLAGLKGRLDYLSSLKVKGLVLGPIHKNQKDDVAQTDLLQIDPNFGSKEDF 290
Query: 711 DSLLQSAKKKSIRVILDLTPNYKGQNSWFDSTQVDTVAAKMKEALSFWLQAGVDGFQVRD 890
DSLLQSAKKKSIRVILDLTPNY+G+NSWF STQVDTVA K+K+AL FWLQAGVDGFQVRD
Sbjct: 291 DSLLQSAKKKSIRVILDLTPNYRGENSWF-STQVDTVATKVKDALEFWLQAGVDGFQVRD 349
Query: 891 MGDLPGASSFLAEWQNLTKSFSEDRLLIAGTXXXXXXXXXXXXEPTKDXXXXXXXXXXXX 1070
+ +L ASSFLAEWQN+TK FSEDRLLIAGT E KD
Sbjct: 350 IENLKDASSFLAEWQNITKGFSEDRLLIAGTNSSDLQQILSLLESNKDLLLTSSYLSDSG 409
Query: 1071 FTGKQTSFLVTQYLNATGSRWCSWSLSQAGLLTSSVPSHXXXXXXXXXXXXPGTPVFSYG 1250
TG+ T LVTQYLNATG+RWCSWSLSQA LLTS +P+ PGTPVFSYG
Sbjct: 410 STGEHTKSLVTQYLNATGNRWCSWSLSQARLLTSFLPAQLLRLYQLMLFTLPGTPVFSYG 469
Query: 1251 DEIGLEEAVLPGQPVKAPVMPWDESSLPSTLGPVNSSSVTVKGRSGDPGSLLSLFRWLSD 1430
DEIGL+ A LPGQP++APVM WDESS P G V S+++TVKG+S DPGSLLSLFR LSD
Sbjct: 470 DEIGLDAAALPGQPMEAPVMLWDESSFPDIPGAV-SANMTVKGQSEDPGSLLSLFRRLSD 528
Query: 1431 LRGKERSLLHGDFHALSSGPDLFSYIRQWDQNERFLIVLNFGDVGQPARLGA------XX 1592
R KERSLLHGDFHA S+GP LFSYIR WDQNERFL+VLNFGDVG A L A
Sbjct: 529 QRSKERSLLHGDFHAFSAGPGLFSYIRHWDQNERFLVVLNFGDVGLSAGLQASDLPASAS 588
Query: 1593 XXXXXXXXXXTQPGRKEGTPLQLEHLNLEPYEGLLLRFPYVA 1718
TQPGR+EG+PL+LE L LEP+EGLLLRFPY A
Sbjct: 589 LPAKADLLLSTQPGREEGSPLELERLKLEPHEGLLLRFPYAA 630
>ref|NP_001013269.1| 4F2 cell-surface antigen heavy chain isoform f [Homo sapiens].
Length = 529
Score = 663 bits (1710), Expect = 0.0
Identities = 358/532 (67%), Positives = 387/532 (72%), Gaps = 7/532 (1%)
Frame = +3
Query: 144 MSQDTEVDMKEVELNELEPEKQPMNXXXXXXXXXXXXPEKNGLVKIKVXXXXXXXXXX-K 320
MSQDTEVDMKEVELNELEPEKQPMN EKNGLVKIKV K
Sbjct: 1 MSQDTEVDMKEVELNELEPEKQPMNAASGAAMSLAGA-EKNGLVKIKVAEDEAEAAAAAK 59
Query: 321 FTGLSKEELLKVAGSPGWVRTRXXXXXXXXXXXXXXXXXXVVIIVQAPRCRELPAQSWWH 500
FTGLSKEELLKVAGSPGWVRTR VVIIV+APRCRELPAQ WWH
Sbjct: 60 FTGLSKEELLKVAGSPGWVRTRWALLLLFWLGWLGMLAGAVVIIVRAPRCRELPAQKWWH 119
Query: 501 KGALYRIGDLQAFQGRDAGDLASLKGHLDYLSTLKVKGFVLGPIHKHQKDDLAGTDLEQI 680
GALYRIGDLQAFQG AG+LA LKG LDYLS+LKVKG VLGPIHK+QKDD+A TDL QI
Sbjct: 120 TGALYRIGDLQAFQGHGAGNLAGLKGRLDYLSSLKVKGLVLGPIHKNQKDDVAQTDLLQI 179
Query: 681 DPAFGSKEDFDSLLQSAKKKSIRVILDLTPNYKGQNSWFDSTQVDTVAAKMKEALSFWLQ 860
DP FGSKEDFDSLLQSAKKKSIRVILDLTPNY+G+NSWF STQVDTVA K+K+AL FWLQ
Sbjct: 180 DPNFGSKEDFDSLLQSAKKKSIRVILDLTPNYRGENSWF-STQVDTVATKVKDALEFWLQ 238
Query: 861 AGVDGFQVRDMGDLPGASSFLAEWQNLTKSFSEDRLLIAGTXXXXXXXXXXXXEPTKDXX 1040
AGVDGFQVRD+ +L ASSFLAEWQN+TK FSEDRLLIAGT E KD
Sbjct: 239 AGVDGFQVRDIENLKDASSFLAEWQNITKGFSEDRLLIAGTNSSDLQQILSLLESNKDLL 298
Query: 1041 XXXXXXXXXXFTGKQTSFLVTQYLNATGSRWCSWSLSQAGLLTSSVPSHXXXXXXXXXXX 1220
TG+ T LVTQYLNATG+RWCSWSLSQA LLTS +P+
Sbjct: 299 LTSSYLSDSGSTGEHTKSLVTQYLNATGNRWCSWSLSQARLLTSFLPAQLLRLYQLMLFT 358
Query: 1221 XPGTPVFSYGDEIGLEEAVLPGQPVKAPVMPWDESSLPSTLGPVNSSSVTVKGRSGDPGS 1400
PGTPVFSYGDEIGL+ A LPGQP++APVM WDESS P G V S+++TVKG+S DPGS
Sbjct: 359 LPGTPVFSYGDEIGLDAAALPGQPMEAPVMLWDESSFPDIPGAV-SANMTVKGQSEDPGS 417
Query: 1401 LLSLFRWLSDLRGKERSLLHGDFHALSSGPDLFSYIRQWDQNERFLIVLNFGDVGQPARL 1580
LLSLFR LSD R KERSLLHGDFHA S+GP LFSYIR WDQNERFL+VLNFGDVG A L
Sbjct: 418 LLSLFRRLSDQRSKERSLLHGDFHAFSAGPGLFSYIRHWDQNERFLVVLNFGDVGLSAGL 477
Query: 1581 GA------XXXXXXXXXXXXTQPGRKEGTPLQLEHLNLEPYEGLLLRFPYVA 1718
A TQPGR+EG+PL+LE L LEP+EGLLLRFPY A
Sbjct: 478 QASDLPASASLPAKADLLLSTQPGREEGSPLELERLKLEPHEGLLLRFPYAA 529
>ref|NP_000332.2| neutral and basic amino acid transport protein rBAT [Homo sapiens].
Length = 685
Score = 70.9 bits (172), Expect = 4e-12
Identities = 43/172 (25%), Positives = 82/172 (47%), Gaps = 6/172 (3%)
Frame = +3
Query: 321 FTGLSKEELLKVAGSPGWVRTRXXXXXXXXXXXXXXXXXXVVIIVQAPRCRELPAQSWWH 500
+ G+ KE L + +G + R + II +P+C + WW
Sbjct: 65 YAGMPKEVLFQFSGQARYRIPREILFWLTVASVLVLIAATIAIIALSPKCLD-----WWQ 119
Query: 501 KGALYRIGDLQAFQGRDA---GDLASLKGHLDYLSTLKVKGFVLGPIHKHQKDDL--AGT 665
+G +Y+I ++F+ + GDL ++ LDY++ L +K + +K D
Sbjct: 120 EGPMYQIYP-RSFKDSNKDGNGDLKGIQDKLDYITALNIKTVWITSFYKSSLKDFRYGVE 178
Query: 666 DLEQIDPAFGSKEDFDSLLQSAKKKSIRVILDLTPNY-KGQNSWFDSTQVDT 818
D ++DP FG+ EDF++L+ + K +++I+D PN+ ++ WF ++ T
Sbjct: 179 DFREVDPIFGTMEDFENLVAAIHDKGLKLIIDFIPNHTSDKHIWFQLSRTRT 230
Score = 56.2 bits (134), Expect = 1e-07
Identities = 53/183 (28%), Positives = 80/183 (43%), Gaps = 21/183 (11%)
Frame = +3
Query: 1074 TGKQTSFLVTQYL-NATGSRWCSWSLS--QAGLLTSSVPSHXXXXXXXXXXXXPGTPVFS 1244
+G ++T ++ N +W +W + + LTS + + PGTP+
Sbjct: 420 SGNSVYEVITSWMENMPEGKWPNWMIGGPDSSRLTSRLGNQYVNVMNMLLFTLPGTPITY 479
Query: 1245 YGDEIGLEEAV---------LPGQPVKAPVMPWDESS------LPSTLGPVNSS--SVTV 1373
YG+EIG+ V + K+P M WD SS +T P NS +V V
Sbjct: 480 YGEEIGMGNIVAANLNESYDINTLRSKSP-MQWDNSSNAGFSEASNTWLPTNSDYHTVNV 538
Query: 1374 KGRSGDPGSLLSLFRWLSDLRGKERSLLHGDFHALSSGPDLFSYIRQWDQNER-FLIVLN 1550
+ P S L L++ LS L E L G F L + Y R+ D +R F++VLN
Sbjct: 539 DVQKTQPRSALKLYQDLSLLHANELLLNRGWFCHLRNDSHYVVYTRELDGIDRIFIVVLN 598
Query: 1551 FGD 1559
FG+
Sbjct: 599 FGE 601
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 69,505,392
Number of extensions: 1896568
Number of successful extensions: 9036
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 8961
Number of HSP's successfully gapped: 6
Length of query: 633
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 524
Effective length of database: 14,704,088
Effective search space: 7704942112
Effective search space used: 7704942112
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LVRM1_0096_B09
(1901 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001154885.1| 4F2 cell-surface antigen heavy chain isoform... 627 e-180
Alignment gi|NP_032603.3| 4F2 cell-surface antigen heavy chain isoform b ... 618 e-177
Alignment gi|NP_033231.2| solute carrier family 3, member 1 [Mus musculus]. 75 1e-13
>ref|NP_001154885.1| 4F2 cell-surface antigen heavy chain isoform a [Mus musculus].
Length = 565
Score = 627 bits (1618), Expect = e-180
Identities = 339/557 (60%), Positives = 387/557 (69%), Gaps = 9/557 (1%)
Frame = +3
Query: 75 SGQVGVQQLADRRLRRVAGSAGTMSQDTEVDMKEVELNELEPEKQPMNXXXXXXXXXXXX 254
S Q G+ D ++ AG +GTMSQDTEVDMK+VELNELEPEKQPMN
Sbjct: 21 SAQTGL----DVQVVSAAGDSGTMSQDTEVDMKDVELNELEPEKQPMNAADGAAAG---- 72
Query: 255 PEKNGLVKIKVXXXXXXXXXXKFTGLSKEELLKVAGSPGWVRTRXXXXXXXXXXXXXXXX 434
EKNGLVKIKV KFTGLSKEELLKVAGSPGWVRTR
Sbjct: 73 -EKNGLVKIKVAEDETEAGV-KFTGLSKEELLKVAGSPGWVRTRWALLLLFWLGWLGMLA 130
Query: 435 XXVVIIVQAPRCRELPAQSWWHKGALYRIGDLQAFQGRDAGDLASLKGHLDYLSTLKVKG 614
VVIIV+APRCRELP Q WWHKGALYRIGDLQAF GRDAG +A LK HL+YLSTLKVKG
Sbjct: 131 GAVVIIVRAPRCRELPVQRWWHKGALYRIGDLQAFVGRDAGGIAGLKSHLEYLSTLKVKG 190
Query: 615 FVLGPIHKHQKDDLAGTDLEQIDPAFGSKEDFDSLLQSAKKKSIRVILDLTPNYKGQNSW 794
VLGPIHK+QKD++ TDL+QI+P GS+EDF LLQSAKKKSI +ILDLTPNY+GQN+W
Sbjct: 191 LVLGPIHKNQKDEINETDLKQINPTLGSQEDFKDLLQSAKKKSIHIILDLTPNYQGQNAW 250
Query: 795 FDSTQVDTVAAKMKEALSFWLQAGVDGFQVRDMGDLPGASSFLAEWQNLTKSFSEDRLLI 974
F Q D VA KMKEALS WLQ GVDGFQ RD+G L A +LAEWQN+TK+ SEDRLLI
Sbjct: 251 FLPAQADIVATKMKEALSSWLQDGVDGFQFRDVGKLMNAPLYLAEWQNITKNLSEDRLLI 310
Query: 975 AGTXXXXXXXXXXXXEPTKDXXXXXXXXXXXXFTGKQTSFLVTQYLNATGSRWCSWSLSQ 1154
AGT E T D FTG++T LVT++LNATGS+WCSWS+SQ
Sbjct: 311 AGTESSDLQQIVNILESTSDLLLTSSYLSNSTFTGERTESLVTRFLNATGSQWCSWSVSQ 370
Query: 1155 AGLLTSSVPSHXXXXXXXXXXXXPGTPVFSYGDEIGLEEAVLPGQPVKAPVMPWDESSLP 1334
AGLL +P H PGTPVFSYGDE+GL+ A LPGQP KAP+MPW+ESS+
Sbjct: 371 AGLLADFIPDHLLRLYQLLLFTLPGTPVFSYGDELGLQGA-LPGQPAKAPLMPWNESSIF 429
Query: 1335 STLGPVNSSSVTVKGRSGDPGSLLSLFRWLSDLRGKERSLLHGDFHALSSGPDLFSYIRQ 1514
PV S ++TVKG++ DPGSLL+ FR LSDLRGKERSLLHGDFHALSS PDLFSYIR
Sbjct: 430 HIPRPV-SLNMTVKGQNEDPGSLLTQFRRLSDLRGKERSLLHGDFHALSSSPDLFSYIRH 488
Query: 1515 WDQNERFLIVLNFGDVGQPARLGA---------XXXXXXXXXXXXTQPGRKEGTPLQLEH 1667
WDQNER+L+VLNF D G+ ARLGA + R+E T L+LE+
Sbjct: 489 WDQNERYLVVLNFRDSGRSARLGASNLPAGISLPASAKLLLSTDSARQSREEDTSLKLEN 548
Query: 1668 LNLEPYEGLLLRFPYVA 1718
L+L PYEGLLL+FP+VA
Sbjct: 549 LSLNPYEGLLLQFPFVA 565
>ref|NP_032603.3| 4F2 cell-surface antigen heavy chain isoform b [Mus musculus].
Length = 526
Score = 618 bits (1594), Expect = e-177
Identities = 331/534 (61%), Positives = 375/534 (70%), Gaps = 9/534 (1%)
Frame = +3
Query: 144 MSQDTEVDMKEVELNELEPEKQPMNXXXXXXXXXXXXPEKNGLVKIKVXXXXXXXXXXKF 323
MSQDTEVDMK+VELNELEPEKQPMN EKNGLVKIKV KF
Sbjct: 1 MSQDTEVDMKDVELNELEPEKQPMNAADGAAAG-----EKNGLVKIKVAEDETEAGV-KF 54
Query: 324 TGLSKEELLKVAGSPGWVRTRXXXXXXXXXXXXXXXXXXVVIIVQAPRCRELPAQSWWHK 503
TGLSKEELLKVAGSPGWVRTR VVIIV+APRCRELP Q WWHK
Sbjct: 55 TGLSKEELLKVAGSPGWVRTRWALLLLFWLGWLGMLAGAVVIIVRAPRCRELPVQRWWHK 114
Query: 504 GALYRIGDLQAFQGRDAGDLASLKGHLDYLSTLKVKGFVLGPIHKHQKDDLAGTDLEQID 683
GALYRIGDLQAF GRDAG +A LK HL+YLSTLKVKG VLGPIHK+QKD++ TDL+QI+
Sbjct: 115 GALYRIGDLQAFVGRDAGGIAGLKSHLEYLSTLKVKGLVLGPIHKNQKDEINETDLKQIN 174
Query: 684 PAFGSKEDFDSLLQSAKKKSIRVILDLTPNYKGQNSWFDSTQVDTVAAKMKEALSFWLQA 863
P GS+EDF LLQSAKKKSI +ILDLTPNY+GQN+WF Q D VA KMKEALS WLQ
Sbjct: 175 PTLGSQEDFKDLLQSAKKKSIHIILDLTPNYQGQNAWFLPAQADIVATKMKEALSSWLQD 234
Query: 864 GVDGFQVRDMGDLPGASSFLAEWQNLTKSFSEDRLLIAGTXXXXXXXXXXXXEPTKDXXX 1043
GVDGFQ RD+G L A +LAEWQN+TK+ SEDRLLIAGT E T D
Sbjct: 235 GVDGFQFRDVGKLMNAPLYLAEWQNITKNLSEDRLLIAGTESSDLQQIVNILESTSDLLL 294
Query: 1044 XXXXXXXXXFTGKQTSFLVTQYLNATGSRWCSWSLSQAGLLTSSVPSHXXXXXXXXXXXX 1223
FTG++T LVT++LNATGS+WCSWS+SQAGLL +P H
Sbjct: 295 TSSYLSNSTFTGERTESLVTRFLNATGSQWCSWSVSQAGLLADFIPDHLLRLYQLLLFTL 354
Query: 1224 PGTPVFSYGDEIGLEEAVLPGQPVKAPVMPWDESSLPSTLGPVNSSSVTVKGRSGDPGSL 1403
PGTPVFSYGDE+GL+ A LPGQP KAP+MPW+ESS+ PV S ++TVKG++ DPGSL
Sbjct: 355 PGTPVFSYGDELGLQGA-LPGQPAKAPLMPWNESSIFHIPRPV-SLNMTVKGQNEDPGSL 412
Query: 1404 LSLFRWLSDLRGKERSLLHGDFHALSSGPDLFSYIRQWDQNERFLIVLNFGDVGQPARLG 1583
L+ FR LSDLRGKERSLLHGDFHALSS PDLFSYIR WDQNER+L+VLNF D G+ ARLG
Sbjct: 413 LTQFRRLSDLRGKERSLLHGDFHALSSSPDLFSYIRHWDQNERYLVVLNFRDSGRSARLG 472
Query: 1584 A---------XXXXXXXXXXXXTQPGRKEGTPLQLEHLNLEPYEGLLLRFPYVA 1718
A + R+E T L+LE+L+L PYEGLLL+FP+VA
Sbjct: 473 ASNLPAGISLPASAKLLLSTDSARQSREEDTSLKLENLSLNPYEGLLLQFPFVA 526
>ref|NP_033231.2| solute carrier family 3, member 1 [Mus musculus].
Length = 685
Score = 75.5 bits (184), Expect = 1e-13
Identities = 46/169 (27%), Positives = 84/169 (49%), Gaps = 6/169 (3%)
Frame = +3
Query: 321 FTGLSKEELLKVAGSPGWVRTRXXXXXXXXXXXXXXXXXXVVIIVQAPRCRELPAQSWWH 500
+ G+ KE L + +G + R + IIV +P+C + WW
Sbjct: 64 YAGMPKEVLFQFSGQARYRVPREILFWLTVVSVFLLIGATIAIIVISPKCLD-----WWQ 118
Query: 501 KGALYRIGDLQAFQGRDA---GDLASLKGHLDYLSTLKVKGFVLGPIHKHQKDDL--AGT 665
G +Y+I ++F+ D GDL ++ LDY++ L +K + +K D A
Sbjct: 119 AGPIYQIYP-RSFKDSDKDGNGDLKGIQEKLDYITALNIKTLWITSFYKSSLKDFRYAVE 177
Query: 666 DLEQIDPAFGSKEDFDSLLQSAKKKSIRVILDLTPNY-KGQNSWFDSTQ 809
D ++IDP FG+ +DF++L+ + K +++I+D PN+ ++ WF S++
Sbjct: 178 DFKEIDPIFGTMKDFENLVAAIHDKGLKLIIDFIPNHTSDKHPWFQSSR 226
Score = 57.8 bits (138), Expect = 3e-08
Identities = 62/223 (27%), Positives = 88/223 (39%), Gaps = 21/223 (9%)
Frame = +3
Query: 1095 LVTQYL-NATGSRWCSWSLS--QAGLLTSSVPSHXXXXXXXXXXXXPGTPVFSYGDEIGL 1265
++T ++ N +W +W + LTS V S PGTP+ YG+EIG+
Sbjct: 426 VITSWMENMPEGKWPNWMTGGPETPRLTSRVGSEYVNAMHMLLFTLPGTPITYYGEEIGM 485
Query: 1266 --------EEAVLPGQPVKAPVMPWDESS------LPSTLGPVNSS--SVTVKGRSGDPG 1397
E+ V M WD SS T P NS +V V + P
Sbjct: 486 GDISVTNFNESYDSTTLVSKSPMQWDNSSNAGFTEANHTWLPTNSDYHTVNVDVQKTQPS 545
Query: 1398 SLLSLFRWLSDLRGKERSLLHGDFHALSSGPDLFSYIRQWDQNER-FLIVLNFGDVGQPA 1574
S L L++ LS L E L G F L Y R+ D + FL+VLNFG+
Sbjct: 546 SALRLYQDLSLLHATELVLSRGWFCLLRDDSHSVVYTRELDGIDNVFLVVLNFGESSTVL 605
Query: 1575 RL-GAXXXXXXXXXXXXTQPGRKEGTPLQLEHLNLEPYEGLLL 1700
L G + +G+ + ++LE EGL+L
Sbjct: 606 NLQGIISDLPPELRIRLSTNSASKGSAVDTRAISLEKGEGLVL 648
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 58,366,261
Number of extensions: 1569888
Number of successful extensions: 7353
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7295
Number of HSP's successfully gapped: 4
Length of query: 633
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 525
Effective length of database: 12,373,671
Effective search space: 6496177275
Effective search space used: 6496177275
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LVRM1_0096_B09
(1901 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001019659.2| solute carrier family 3, member 2 [Bos tauru... 680 0.0
Alignment gi|NP_001029805.1| neutral and basic amino acid transport prote... 70 5e-12
>ref|NP_001019659.2| solute carrier family 3, member 2 [Bos taurus].
Length = 572
Score = 680 bits (1755), Expect = 0.0
Identities = 364/539 (67%), Positives = 392/539 (72%), Gaps = 9/539 (1%)
Frame = +3
Query: 129 GSAGTMSQDTEVDMKEVELNELEPEKQPMNXXXXXXXXXXXX--PEKNGLVKIKVXXXXX 302
G +GTMSQDTEVDMKEVELNELEPEKQPMN EKNGLVKIKV
Sbjct: 35 GDSGTMSQDTEVDMKEVELNELEPEKQPMNAASGAAMAVVVAGGTEKNGLVKIKVADDEA 94
Query: 303 XXXXX-KFTGLSKEELLKVAGSPGWVRTRXXXXXXXXXXXXXXXXXXVVIIVQAPRCREL 479
KFTGLSKEELLKVAGSP WVRTR VVIIVQAPRCREL
Sbjct: 95 DAAAEAKFTGLSKEELLKVAGSPAWVRTRWALLLLFWLGWLGMLAGAVVIIVQAPRCREL 154
Query: 480 PAQSWWHKGALYRIGDLQAFQGRDAGDLASLKGHLDYLSTLKVKGFVLGPIHKHQKDDLA 659
P Q WWHKGALYRIGDL+AF G++AG+LA LK +DYLSTLKVKGFVLGPIHK+Q+DDL
Sbjct: 155 PEQRWWHKGALYRIGDLRAFLGQEAGNLADLKERMDYLSTLKVKGFVLGPIHKNQEDDLT 214
Query: 660 GTDLEQIDPAFGSKEDFDSLLQSAKKKSIRVILDLTPNYKGQNSWFDSTQVDTVAAKMKE 839
T+LEQIDP FGSKEDF+SLL SAKKKSIRVILDLTPNYKGQN WF S Q+DTVA KMKE
Sbjct: 215 ETNLEQIDPIFGSKEDFESLLHSAKKKSIRVILDLTPNYKGQNPWFQSIQIDTVAIKMKE 274
Query: 840 ALSFWLQAGVDGFQVRDMGDLPGASSFLAEWQNLTKSFSEDRLLIAGTXXXXXXXXXXXX 1019
AL FWLQ GVDGFQVRD+ +L SSFLAEWQN+TKS SEDRLLIAGT
Sbjct: 275 ALRFWLQTGVDGFQVRDVQNLTNPSSFLAEWQNITKSVSEDRLLIAGTDSSDLQQILRLL 334
Query: 1020 EPTKDXXXXXXXXXXXXFTGKQTSFLVTQYLNATGSRWCSWSLSQAGLLTSSVPSHXXXX 1199
EPT+D TG T+FLVTQYL+A GS WCSWS+SQAGLLTS V
Sbjct: 335 EPTRDLLLTSSYLSHSSLTGNHTNFLVTQYLDAFGSNWCSWSVSQAGLLTSFVSPQLLRL 394
Query: 1200 XXXXXXXXPGTPVFSYGDEIGLEEAVLPGQPVKAPVMPWDESSLPSTLGPVNSSSVTVKG 1379
PGTPVFSYGDEIGLE A LPGQPVKAPVM WDESS P+T +N S+TVKG
Sbjct: 395 YQLLFFTLPGTPVFSYGDEIGLEGAGLPGQPVKAPVMLWDESSFPNTSASIN-ISMTVKG 453
Query: 1380 RSGDPGSLLSLFRWLSDLRGKERSLLHGDFHALSSGPDLFSYIRQWDQNERFLIVLNFGD 1559
+S D SLLSLFRWLSD RGKERSLLHGDF+ LSSGPDLFSYIRQWDQNERFL+VLNFGD
Sbjct: 454 QSEDRNSLLSLFRWLSDQRGKERSLLHGDFYDLSSGPDLFSYIRQWDQNERFLVVLNFGD 513
Query: 1560 VGQPARLGA------XXXXXXXXXXXXTQPGRKEGTPLQLEHLNLEPYEGLLLRFPYVA 1718
VGQ ARL A TQPGR+EGT L+LEHLNL+P+EGLLLRFPYVA
Sbjct: 514 VGQLARLRASSLPTGTSLPARVDLLLSTQPGREEGTSLELEHLNLQPHEGLLLRFPYVA 572
>ref|NP_001029805.1| neutral and basic amino acid transport protein rBAT [Bos taurus].
Length = 685
Score = 70.5 bits (171), Expect = 5e-12
Identities = 44/172 (25%), Positives = 83/172 (48%), Gaps = 6/172 (3%)
Frame = +3
Query: 321 FTGLSKEELLKVAGSPGWVRTRXXXXXXXXXXXXXXXXXXVVIIVQAPRCRELPAQSWWH 500
+ G+ KE L + +G + R + II +P+C + WW
Sbjct: 65 YAGMPKEVLFQFSGQACYRIPREVLFWLTVASVLVLIAATIAIIAISPKCLD-----WWQ 119
Query: 501 KGALYRIGDLQAFQGRDA---GDLASLKGHLDYLSTLKVKGFVLGPIHKHQKDDLAG--T 665
G +Y+I ++F+ + GDL ++ LDY++TL +K + +K D
Sbjct: 120 AGPMYQIYP-RSFRDSNKDGDGDLKGIQDKLDYITTLNIKTVWITSFYKSSLKDFRHGVE 178
Query: 666 DLEQIDPAFGSKEDFDSLLQSAKKKSIRVILDLTPNY-KGQNSWFDSTQVDT 818
D +IDP FG+ +DF++L+ + K +++I+D PN+ +++WF ++ T
Sbjct: 179 DFREIDPIFGTMKDFENLVAAIHDKGLKLIIDFIPNHTSDKHAWFQWSRNQT 230
Score = 53.9 bits (128), Expect = 5e-07
Identities = 54/182 (29%), Positives = 74/182 (40%), Gaps = 20/182 (10%)
Frame = +3
Query: 1074 TGKQTSFLVTQYL-NATGSRWCSWSLS--QAGLLTSSVPSHXXXXXXXXXXXXPGTPVFS 1244
+G S ++T ++ N +W +W + LTS + PGTP+
Sbjct: 420 SGNSVSEIITSWMENMPEGKWPNWMTGGPDSVRLTSRLGEKYVNIMNMLVFTLPGTPITY 479
Query: 1245 YGDEIG--------LEEAVLPGQPVKAPVMPWDESSLPS------TLGPVNSS--SVTVK 1376
YG+EIG L E G M WD SS T P +S +V V
Sbjct: 480 YGEEIGMRNILAANLNETYDAGTLFSKSPMQWDNSSNAGFSEGNHTWLPTSSDYHTVNVD 539
Query: 1377 GRSGDPGSLLSLFRWLSDLRGKERSLLHGDFHALSSGPDLFSYIRQWDQ-NERFLIVLNF 1553
+ P S L L++ LS L E L G F L + Y R+ D N FL+VLNF
Sbjct: 540 VQKTQPRSALKLYQELSLLHANELLLGRGWFCFLGNYNHSIMYTRELDGINRIFLMVLNF 599
Query: 1554 GD 1559
G+
Sbjct: 600 GE 601
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 68,341,103
Number of extensions: 1948442
Number of successful extensions: 9263
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 9201
Number of HSP's successfully gapped: 3
Length of query: 633
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 525
Effective length of database: 14,107,870
Effective search space: 7406631750
Effective search space used: 7406631750
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA LVRM1_0096_B09
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LVRM1_0096_B09
(1901 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540898.2| PREDICTED: similar to solute carrier family 3 (... 683 0.0
Alignment gi|XP_855564.1| PREDICTED: amino acid transporter SLC3A1 [Canis... 77 8e-14
Alignment gi|NP_001003109.1| neutral and basic amino acid transport prote... 74 4e-13
>ref|XP_540898.2| PREDICTED: similar to solute carrier family 3 (activators of dibasic
and neutral amino acid transport), member 2 isoform a
[Canis familiaris].
Length = 569
Score = 683 bits (1762), Expect = 0.0
Identities = 371/576 (64%), Positives = 406/576 (70%), Gaps = 9/576 (1%)
Frame = +3
Query: 18 VTEAARNPAALGGRSGTGRSGQVGVQQLADRRLRRVAGSAGTMSQDTEVDMKEVELNELE 197
V EAAR GR+ R+ Q QL +AG MSQDTEVD+KEVELNELE
Sbjct: 5 VAEAARGGVVRRGRADAERAEQESSHQL----------TAGAMSQDTEVDLKEVELNELE 54
Query: 198 PEKQPMNXXXXXXXXXXXX--PEKNGLVKIKVXXXXXXXXXX-KFTGLSKEELLKVAGSP 368
PEKQPMN EKNGLVKIKV KFTGLSKEELLKVAGSP
Sbjct: 55 PEKQPMNAASGAAMAVVVAGGAEKNGLVKIKVADDEAEAAAAAKFTGLSKEELLKVAGSP 114
Query: 369 GWVRTRXXXXXXXXXXXXXXXXXXVVIIVQAPRCRELPAQSWWHKGALYRIGDLQAFQGR 548
GWVRTR VVIIV+APRCRELPAQSWWHKGALYRIGDLQAFQG
Sbjct: 115 GWVRTRWALLVLFWLGWLGMLAGAVVIIVRAPRCRELPAQSWWHKGALYRIGDLQAFQGP 174
Query: 549 DAGDLASLKGHLDYLSTLKVKGFVLGPIHKHQKDDLAGTDLEQIDPAFGSKEDFDSLLQS 728
G L LKGHLDYLSTLKVKGFVLGPIH++QKDDL+GT+LEQIDP FGSKEDFD+LLQS
Sbjct: 175 RGGGLVGLKGHLDYLSTLKVKGFVLGPIHRNQKDDLSGTNLEQIDPTFGSKEDFDNLLQS 234
Query: 729 AKKKSIRVILDLTPNYKGQNSWFDSTQVDTVAAKMKEALSFWLQAGVDGFQVRDMGDLPG 908
AKKKSIRVILDLTPNYKGQ+SWF T++D VAAKMK ALSFWL+AGVDGFQVR++ +L
Sbjct: 235 AKKKSIRVILDLTPNYKGQDSWFLPTEIDAVAAKMKFALSFWLRAGVDGFQVRNVENLTD 294
Query: 909 ASSFLAEWQNLTKSFSEDRLLIAGTXXXXXXXXXXXXEPTKDXXXXXXXXXXXXFTGKQT 1088
AS +LAEWQN+TKSFSEDRLLIAGT TKD TG+ T
Sbjct: 295 ASLYLAEWQNVTKSFSEDRLLIAGTESSDLQQILSLLGSTKDLLLTSSYLSSPDITGRHT 354
Query: 1089 SFLVTQYLNATGSRWCSWSLSQAGLLTSSVPSHXXXXXXXXXXXXPGTPVFSYGDEIGLE 1268
FLVTQYLNAT +RWCSWSLSQAG LTS VP+H PGTPVFSYGDEIGLE
Sbjct: 355 EFLVTQYLNATDNRWCSWSLSQAGFLTSFVPAHLLRLYQLLLFTLPGTPVFSYGDEIGLE 414
Query: 1269 EAVLPGQPVKAPVMPWDESSLPSTLGPVNSSSVTVKGRSGDPGSLLSLFRWLSDLRGKER 1448
A LPGQP +AP M WDESS P+ GP SS+++VK ++ DP SLLSLFR LSD RGKER
Sbjct: 415 AAALPGQPAQAPFMLWDESSFPNASGP-GSSNMSVKSQNEDPRSLLSLFRRLSDQRGKER 473
Query: 1449 SLLHGDFHALSSGPDLFSYIRQWDQNERFLIVLNFGDVGQPARLG------AXXXXXXXX 1610
SLLHGDFHALSSGPD+F+YIRQWDQNERFLIVLNFGDVGQ A+LG
Sbjct: 474 SLLHGDFHALSSGPDIFAYIRQWDQNERFLIVLNFGDVGQLAKLGVSGLPATTSLPAKVN 533
Query: 1611 XXXXTQPGRKEGTPLQLEHLNLEPYEGLLLRFPYVA 1718
T G +E L+LEHLNLEP+EGLLLRFPYVA
Sbjct: 534 LLLSTHLGHEEDASLELEHLNLEPHEGLLLRFPYVA 569
>ref|XP_855564.1| PREDICTED: amino acid transporter SLC3A1 [Canis familiaris].
Length = 700
Score = 76.6 bits (187), Expect = 8e-14
Identities = 54/209 (25%), Positives = 89/209 (42%), Gaps = 6/209 (2%)
Frame = +3
Query: 189 ELEPEKQPMNXXXXXXXXXXXXPEKNGLVKIKVXXXXXXXXXXKFTGLSKEELLKVAGSP 368
E EPE +P P G + + + G+ KE L + +
Sbjct: 36 EPEPEPEPEPEPERARGPASSPPCPGGAAGLGLGLGLGLGAAGPYAGMPKEVLFQFSRRA 95
Query: 369 GWVRTRXXXXXXXXXXXXXXXXXXVVIIVQAPRCRELPAQSWWHKGALYRIGDLQAFQGR 548
+ R + II +PRC + WW G +YRI ++F+
Sbjct: 96 RYRAPREALFWLTVASVLALTGATIAIIAVSPRCLD-----WWQAGPVYRIYP-RSFRDS 149
Query: 549 DA---GDLASLKGHLDYLSTLKVKGFVLGPIHKHQKDDLAG--TDLEQIDPAFGSKEDFD 713
DA GDL ++ LDY++TL +K + +K D D IDP FG+ +DF+
Sbjct: 150 DADGNGDLKGIQEKLDYITTLNIKTIWITSFYKSSLKDFRYGIEDFRDIDPIFGTMKDFE 209
Query: 714 SLLQSAKKKSIRVILDLTPNY-KGQNSWF 797
+LL + K +++I+D PN+ +++WF
Sbjct: 210 NLLAAIHDKGLKLIIDFIPNHTSDKHAWF 238
>ref|NP_001003109.1| neutral and basic amino acid transport protein rBAT [Canis lupus
familiaris].
Length = 700
Score = 74.3 bits (181), Expect = 4e-13
Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 6/165 (3%)
Frame = +3
Query: 321 FTGLSKEELLKVAGSPGWVRTRXXXXXXXXXXXXXXXXXXVVIIVQAPRCRELPAQSWWH 500
+ G+ KE L + + + R + II +PRC + WW
Sbjct: 80 YAGMPKEVLFQFSRRARYRAPREALFWLTVASVLALTGATIAIIAVSPRCLD-----WWQ 134
Query: 501 KGALYRIGDLQAFQGRDA---GDLASLKGHLDYLSTLKVKGFVLGPIHKHQKDDLAG--T 665
G +YRI ++F+ DA GDL ++ LDY++TL +K + +K D
Sbjct: 135 AGPVYRIYP-RSFRDSDADGNGDLKGIQEKLDYITTLNIKTIWITSFYKSSLKDFRYGIE 193
Query: 666 DLEQIDPAFGSKEDFDSLLQSAKKKSIRVILDLTPNY-KGQNSWF 797
D IDP FG+ +DF++LL + K +++I+D PN+ +++WF
Sbjct: 194 DFRDIDPIFGTMKDFENLLAAIHDKGLKLIIDFIPNHTSDKHAWF 238
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 71,060,258
Number of extensions: 1952540
Number of successful extensions: 9715
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 9673
Number of HSP's successfully gapped: 3
Length of query: 633
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 524
Effective length of database: 15,240,880
Effective search space: 7986221120
Effective search space used: 7986221120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LVRM1_0096_B09
(1901 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003353857.1| PREDICTED: 4F2 cell-surface antigen heavy ch... 850 0.0
Alignment gi|XP_003361866.1| PREDICTED: 4F2 cell-surface antigen heavy ch... 568 e-162
Alignment gi|NP_001116514.1| neutral and basic amino acid transport prote... 74 4e-13
>ref|XP_003353857.1| PREDICTED: 4F2 cell-surface antigen heavy chain [Sus scrofa].
Length = 563
Score = 850 bits (2196), Expect = 0.0
Identities = 437/530 (82%), Positives = 441/530 (83%)
Frame = +3
Query: 129 GSAGTMSQDTEVDMKEVELNELEPEKQPMNXXXXXXXXXXXXPEKNGLVKIKVXXXXXXX 308
G++GTMSQDTEVDMKEVELNELEPEKQPMN PEKNGLVKIKV
Sbjct: 35 GNSGTMSQDTEVDMKEVELNELEPEKQPMNAASGAAVVVSGGPEKNGLVKIKVADDEADA 94
Query: 309 XXXKFTGLSKEELLKVAGSPGWVRTRXXXXXXXXXXXXXXXXXXVVIIVQAPRCRELPAQ 488
KFTGLSKEELLKVAGSPGWVRTR VVIIVQAPRCRELPAQ
Sbjct: 95 AAAKFTGLSKEELLKVAGSPGWVRTRWALLLLFWLGWLGMLAGAVVIIVQAPRCRELPAQ 154
Query: 489 SWWHKGALYRIGDLQAFQGRDAGDLASLKGHLDYLSTLKVKGFVLGPIHKHQKDDLAGTD 668
SWWHKGALYRIGDLQAFQGRDAGDLASLKGHLDYLSTLKVKGFVLGPIHKHQKDDLAGTD
Sbjct: 155 SWWHKGALYRIGDLQAFQGRDAGDLASLKGHLDYLSTLKVKGFVLGPIHKHQKDDLAGTD 214
Query: 669 LEQIDPAFGSKEDFDSLLQSAKKKSIRVILDLTPNYKGQNSWFDSTQVDTVAAKMKEALS 848
LEQIDPAFGSKEDFDSLLQSAKKKSIRVILDLTPNYKGQNSWFDSTQVDTVAAKMKEALS
Sbjct: 215 LEQIDPAFGSKEDFDSLLQSAKKKSIRVILDLTPNYKGQNSWFDSTQVDTVAAKMKEALS 274
Query: 849 FWLQAGVDGFQVRDMGDLPGASSFLAEWQNLTKSFSEDRLLIAGTXXXXXXXXXXXXEPT 1028
FWLQAGVDGFQVRD+GDLPGASSFLAEWQNLTKSFSEDRLLIAGT EPT
Sbjct: 275 FWLQAGVDGFQVRDVGDLPGASSFLAEWQNLTKSFSEDRLLIAGTDSSDLQQILSLLEPT 334
Query: 1029 KDXXXXXXXXXXXXFTGKQTSFLVTQYLNATGSRWCSWSLSQAGLLTSSVPSHXXXXXXX 1208
KD FTGKQTSFLVTQYLNATGSRWCSWSLSQAGLLTSSVPSH
Sbjct: 335 KDLLLTSSYLSNSSFTGKQTSFLVTQYLNATGSRWCSWSLSQAGLLTSSVPSHLLRLYQL 394
Query: 1209 XXXXXPGTPVFSYGDEIGLEEAVLPGQPVKAPVMPWDESSLPSTLGPVNSSSVTVKGRSG 1388
PGTPVFSYGDEIGLEEAVLPGQPVKAPVMPWDESSLPSTLGPVN SSVTVKG+SG
Sbjct: 395 LLFTLPGTPVFSYGDEIGLEEAVLPGQPVKAPVMPWDESSLPSTLGPVN-SSVTVKGQSG 453
Query: 1389 DPGSLLSLFRWLSDLRGKERSLLHGDFHALSSGPDLFSYIRQWDQNERFLIVLNFGDVGQ 1568
DPGSLLSLFRWLSDLRGKERSLLHGDFHALSSGPDLFSYIRQWDQNERFLIVLNFGDVGQ
Sbjct: 454 DPGSLLSLFRWLSDLRGKERSLLHGDFHALSSGPDLFSYIRQWDQNERFLIVLNFGDVGQ 513
Query: 1569 PARLGAXXXXXXXXXXXXTQPGRKEGTPLQLEHLNLEPYEGLLLRFPYVA 1718
PARLGA TQPGRKEGTPLQLEHLNLEPYEGLLLRFPYVA
Sbjct: 514 PARLGASSLPSSVDLLLSTQPGRKEGTPLQLEHLNLEPYEGLLLRFPYVA 563
>ref|XP_003361866.1| PREDICTED: 4F2 cell-surface antigen heavy chain-like, partial [Sus
scrofa].
Length = 427
Score = 568 bits (1465), Expect = e-162
Identities = 291/345 (84%), Positives = 296/345 (85%), Gaps = 3/345 (0%)
Frame = +3
Query: 561 LASLKGHLDYLSTLKVKGFVLGPIHKHQKDDLAGTDLEQIDPAFGSKEDFDSLLQSAKKK 740
++ LKGHLDYLSTLKVKGFVLGPIHKHQKDDLAGTDLEQIDPAFGSKEDFDSLLQSAKKK
Sbjct: 74 ISGLKGHLDYLSTLKVKGFVLGPIHKHQKDDLAGTDLEQIDPAFGSKEDFDSLLQSAKKK 133
Query: 741 SIRVILDLTPNYKGQNSWFDSTQVDTVAAKMKEALSFWLQAGVDGFQVRDMGDLPGASSF 920
SIRVILDLTPNYKGQNSWFDSTQVDTVAAKMKEALSFWLQAGVDGFQVRD+GDLPGASSF
Sbjct: 134 SIRVILDLTPNYKGQNSWFDSTQVDTVAAKMKEALSFWLQAGVDGFQVRDVGDLPGASSF 193
Query: 921 LAEWQNLTKSFSEDRLLIAGTXXXXXXXXXXXXEPTKDXXXXXXXXXXXXFTGKQTSFLV 1100
LAEWQNLTKSFSEDR + EPTKD FTGKQTSFLV
Sbjct: 194 LAEWQNLTKSFSEDRWVXXXXDSSDLQQILSLLEPTKDLLLTSSYLSNSSFTGKQTSFLV 253
Query: 1101 TQYLNATGSRWCSWSLSQAGLLTSSVPSHXXXXXXXXXXXXPGTPVFSYGDEIGLEEAVL 1280
TQYLNATGSRWCSWSLSQAGLLTSSVPSH PGTPVFSYGDEIGLEEA
Sbjct: 254 TQYLNATGSRWCSWSLSQAGLLTSSVPSHLLRLYQLLLLTLPGTPVFSYGDEIGLEEAXP 313
Query: 1281 PGQ---PVKAPVMPWDESSLPSTLGPVNSSSVTVKGRSGDPGSLLSLFRWLSDLRGKERS 1451
P Q PVKAPVMPWDESSLPSTLGPVN SSVTVKG+SGDPGSLLSLFRWLSDLRGKERS
Sbjct: 314 PSQEPGPVKAPVMPWDESSLPSTLGPVN-SSVTVKGQSGDPGSLLSLFRWLSDLRGKERS 372
Query: 1452 LLHGDFHALSSGPDLFSYIRQWDQNERFLIVLNFGDVGQPARLGA 1586
LLHGDFHALSSGPDLFSYIRQWDQNERFLIVLNFGDVGQPARLGA
Sbjct: 373 LLHGDFHALSSGPDLFSYIRQWDQNERFLIVLNFGDVGQPARLGA 417
Score = 56.6 bits (135), Expect = 5e-08
Identities = 37/82 (45%), Positives = 39/82 (47%)
Frame = +3
Query: 126 AGSAGTMSQDTEVDMKEVELNELEPEKQPMNXXXXXXXXXXXXPEKNGLVKIKVXXXXXX 305
AGSAGTMSQDTEVDMKE PEKNGLVKIKV
Sbjct: 22 AGSAGTMSQDTEVDMKEX------------------------GPEKNGLVKIKVADDEAD 57
Query: 306 XXXXKFTGLSKEELLKVAGSPG 371
KFTGLSK ++G G
Sbjct: 58 AAAAKFTGLSKXICFSISGLKG 79
>ref|NP_001116514.1| neutral and basic amino acid transport protein rBAT [Sus scrofa].
Length = 682
Score = 73.6 bits (179), Expect = 4e-13
Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 6/172 (3%)
Frame = +3
Query: 321 FTGLSKEELLKVAGSPGWVRTRXXXXXXXXXXXXXXXXXXVVIIVQAPRCRELPAQSWWH 500
+ G+ KE L + +G + R + II +P+C + WW
Sbjct: 62 YAGMPKEVLFQFSGQARYRVPREVLFWLTVASVLALIAATISIIAISPKCLD-----WWQ 116
Query: 501 KGALYRIGDLQAFQGRDA---GDLASLKGHLDYLSTLKVKGFVLGPIHKHQKDDL--AGT 665
G +Y+I ++F+ D GDL ++ LDYL+TL +K + +K D
Sbjct: 117 AGPMYQIYP-RSFKDSDKDGNGDLKGIQDKLDYLTTLNIKTVWITSFYKSSLKDFRYGVE 175
Query: 666 DLEQIDPAFGSKEDFDSLLQSAKKKSIRVILDLTPNY-KGQNSWFDSTQVDT 818
D +IDP FG+ +DF++L+ + K +++I+D PN+ +++WF ++ T
Sbjct: 176 DFREIDPIFGTMKDFENLVAAIHDKGLKLIIDFIPNHTSDKHAWFQLSRTRT 227
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 44,686,579
Number of extensions: 1340364
Number of successful extensions: 6402
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6374
Number of HSP's successfully gapped: 4
Length of query: 633
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 528
Effective length of database: 8,729,747
Effective search space: 4609306416
Effective search space used: 4609306416
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LVRM1_0096_B09
(1901 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 1102 0.0
gb|GL895728.2| Sus scrofa unplaced genomic scaffold ChrUScaf3612 478 e-132
>Sscrofa_Chr02
|| Length = 162569375
Score = 1102 bits (556), Expect = 0.0
Identities = 565/568 (99%)
Strand = Plus / Plus
Query: 1 gcctcgccgcagacgttgtgacggaagctgcgcggaatccagccgccttgggaggccgtt 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 8265762 gcctcgccgcagacgttgtggcggaagctgcgcggaatccagccgccttgggaggccgtt 8265821
Query: 61 ctgggaccgggaggtccgggcaggtaggcgtccagcagctcgctgaccgaaggttgcgtc 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 8265822 ctgggaccgggaggtccgggcaggtaggcgtccagccgctcgctgaccgaaggctgcgtc 8265881
Query: 121 gtgtcgccggttctgcaggcaccatgagccaggacaccgaggtggacatgaaggaagtgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8265882 gtgtcgccggttctgcaggcaccatgagccaggacaccgaggtggacatgaaggaagtgg 8265941
Query: 181 agctgaacgagctggaacccgagaagcagccgatgaacgcggcgtctggggcagccgtgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8265942 agctgaacgagctggaacccgagaagcagccgatgaacgcggcgtctggggcagccgtgg 8266001
Query: 241 tcgtgtcgggcggccccgagaagaatggtctggtgaagattaaggtggccgacgatgagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8266002 tcgtgtcgggcggccccgagaagaatggtctggtgaagattaaggtggccgacgatgagg 8266061
Query: 301 cagacgcggcagcagccaagttcacgggcctgtctaaagaggagctgctgaaggtggcgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8266062 cagacgcggcagcagccaagttcacgggcctgtctaaagaggagctgctgaaggtggcgg 8266121
Query: 361 gaagccccggctgggtgcgcacccgctgggcgctgctgctgctcttttggctcggctggc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8266122 gaagccccggctgggtgcgcacccgctgggcgctgctgctgctcttttggctcggctggc 8266181
Query: 421 tgggtatgctggcgggcgccgtggtcatcatcgtgcaggcgccacgctgccgcgagctgc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8266182 tgggtatgctggcgggcgccgtggtcatcatcgtgcaggcgccacgctgccgcgagctgc 8266241
Query: 481 ccgcgcagagctggtggcacaagggcgccctctaccgcattggcgaccttcaggctttcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8266242 ccgcgcagagctggtggcacaagggcgccctctaccgcattggcgaccttcaggctttcc 8266301
Query: 541 agggccgcgacgcgggagacctagcgag 568
||||||||||||||||||||||||||||
Sbjct: 8266302 agggccgcgacgcgggagacctagcgag 8266329
Score = 678 bits (342), Expect = 0.0
Identities = 345/346 (99%)
Strand = Plus / Plus
Query: 1375 agggccggagcggagaccctggctccctcctctccctgttccgctggctgagtgatctgc 1434
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8272553 agggccagagcggagaccctggctccctcctctccctgttccgctggctgagtgatctgc 8272612
Query: 1435 gggggaaggagcgctccctgctgcacggagacttccacgcgctctcctcggggcccgacc 1494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8272613 gggggaaggagcgctccctgctgcacggagacttccacgcgctctcctcggggcccgacc 8272672
Query: 1495 tcttctcctacatccgccagtgggaccagaacgagcgcttcctgatagtgctcaacttcg 1554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8272673 tcttctcctacatccgccagtgggaccagaacgagcgcttcctgatagtgctcaacttcg 8272732
Query: 1555 gggatgtgggccaacctgccaggctgggggcctccagcctgccctccagtgtggatctgc 1614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8272733 gggatgtgggccaacctgccaggctgggggcctccagcctgccctccagtgtggatctgc 8272792
Query: 1615 tgctcagcacccagccaggccgcaaggagggcacccctctccagctggagcacctgaacc 1674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8272793 tgctcagcacccagccaggccgcaaggagggcacccctctccagctggagcacctgaacc 8272852
Query: 1675 tggagccctatgaggggctgctgctccgcttcccctatgtggcctg 1720
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8272853 tggagccctatgaggggctgctgctccgcttcccctatgtggcctg 8272898
Score = 339 bits (171), Expect = 3e-90
Identities = 174/175 (99%)
Strand = Plus / Plus
Query: 568 gcctgaaggggcatcttgattacttgagcaccctgaaggtgaaaggttttgtgctgggcc 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8266697 gcctgaaggggcatcttgattacttgagcaccctgaaggtgaaaggttttgtgctgggcc 8266756
Query: 628 caattcacaagcaccagaaggatgacctcgcagggaccgacttggaacagatcgaccccg 687
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 8266757 caattcacaagcaccagaaggatgacctcgcaggcaccgacttggaacagatcgaccccg 8266816
Query: 688 ctttcggttctaaggaagattttgacagtctcctgcaatcggccaagaaaaagag 742
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8266817 ctttcggttctaaggaagattttgacagtctcctgcaatcggccaagaaaaagag 8266871
Score = 337 bits (170), Expect = 1e-89
Identities = 179/182 (98%)
Strand = Plus / Plus
Query: 963 aggctcttgattgcaggcaccgactcctccgacctacagcagatcctgagcctcctcgaa 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8270374 aggctcttgattgcaggcaccgactcctccgacctacagcagatcctgagcctcctcgaa 8270433
Query: 1023 cccaccaaggacctgttgttaactagctcgtacctgtccaactcctctttcacggggaag 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8270434 cccaccaaggacctgttgttaactagctcgtacctgtccaactcctctttcacggggaag 8270493
Query: 1083 caaaccagtttcctggtcacacagtatttgaacgccactggcagtcgctggtgcagttgg 1142
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||
Sbjct: 8270494 caaaccagtttcctggtcacgcagtatttgaatgccactggcagtcgctggtgcagctgg 8270553
Query: 1143 ag 1144
||
Sbjct: 8270554 ag 8270555
Score = 270 bits (136), Expect = 3e-69
Identities = 142/144 (98%)
Strand = Plus / Plus
Query: 1146 ttgtcgcaggcggggcttctgacctcctctgtgccgtctcacctcctccggctctaccag 1205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8270863 ttgtcgcaggcggggcttctgacctcctctgtgccgtctcacctcctccggctctaccag 8270922
Query: 1206 ctgctgctcttcactctgccggggaccccagtgttcagctatggagacgagattggcctg 1265
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 8270923 ctgctgctcttcactctgccggggaccccagtgttcagctacggagacgagattggcctg 8270982
Query: 1266 gaggaagctgtcctccctggacag 1289
|||||||| |||||||||||||||
Sbjct: 8270983 gaggaagcggtcctccctggacag 8271006
Score = 190 bits (96), Expect = 2e-45
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 742 gcatccgggtcattctagacctcactcccaactataagggccagaactcatggttcgact 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8267448 gcatccgggtcattctagacctcactcccaactataagggccagaactcatggttcgact 8267507
Query: 802 ccactcaggtggacactgtggctgccaagatgaagg 837
||||||||||||||||||||||||||||||||||||
Sbjct: 8267508 ccactcaggtggacactgtggctgccaagatgaagg 8267543
Score = 143 bits (72), Expect = 4e-31
Identities = 86/90 (95%), Gaps = 3/90 (3%)
Strand = Plus / Plus
Query: 1288 agcctgtgaaggccccggtcatgccatgggatgaatccagccttcccagcaccttaggac 1347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8272352 agcctgtgaaggccccggtcatgccatgggatgaatccagccttcccagcaccttaggac 8272411
Query: 1348 ctgtaaacagcagcagcgtgactgtgaagg 1377
|||| || ||||||||||||||||||||
Sbjct: 8272412 ctgtgaa---cagcagcgtgactgtgaagg 8272438
Score = 135 bits (68), Expect = 1e-28
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 835 aggaagctctgagtttttggctgcaggccggtgtggatgggttccaggttcgggacatgg 894
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 8269982 aggaagctctgagtttttggctgcaggccggtgtggatgggttccaggttcgggacgtgg 8270041
Query: 895 gggatctgccag 906
||||||||||||
Sbjct: 8270042 gggatctgccag 8270053
Score = 121 bits (61), Expect = 1e-24
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 1814 actgttacagataaactcccaaatagggcattttctgcttcaaataaatgtcagccctgc 1873
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8272983 actgttacagatgaactcccaaatagggcattttctgcttcaaataaatgtcagccctgc 8273042
Query: 1874 ctggt 1878
|||||
Sbjct: 8273043 ctggt 8273047
Score = 111 bits (56), Expect = 1e-21
Identities = 59/60 (98%)
Strand = Plus / Plus
Query: 906 ggcgcgtcttcattcctggctgagtggcagaacctcaccaagagcttcagcgaggatagg 965
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 8270155 ggcgcgtcttcattcctggctgagtggcagaacctcactaagagcttcagcgaggatagg 8270214
>gb|GL895728.2| Sus scrofa unplaced genomic scaffold ChrUScaf3612
Length = 17238
Score = 478 bits (241), Expect = e-132
Identities = 244/245 (99%)
Strand = Plus / Minus
Query: 1375 agggccggagcggagaccctggctccctcctctccctgttccgctggctgagtgatctgc 1434
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2006 agggccagagcggagaccctggctccctcctctccctgttccgctggctgagtgatctgc 1947
Query: 1435 gggggaaggagcgctccctgctgcacggagacttccacgcgctctcctcggggcccgacc 1494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1946 gggggaaggagcgctccctgctgcacggagacttccacgcgctctcctcggggcccgacc 1887
Query: 1495 tcttctcctacatccgccagtgggaccagaacgagcgcttcctgatagtgctcaacttcg 1554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1886 tcttctcctacatccgccagtgggaccagaacgagcgcttcctgatagtgctcaacttcg 1827
Query: 1555 gggatgtgggccaacctgccaggctgggggcctccagcctgccctccagtgtggatctgc 1614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1826 gggatgtgggccaacctgccaggctgggggcctccagcctgccctccagtgtggatctgc 1767
Query: 1615 tgctc 1619
|||||
Sbjct: 1766 tgctc 1762
Score = 339 bits (171), Expect = 3e-90
Identities = 174/175 (99%)
Strand = Plus / Minus
Query: 568 gcctgaaggggcatcttgattacttgagcaccctgaaggtgaaaggttttgtgctgggcc 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7116 gcctgaaggggcatcttgattacttgagcaccctgaaggtgaaaggttttgtgctgggcc 7057
Query: 628 caattcacaagcaccagaaggatgacctcgcagggaccgacttggaacagatcgaccccg 687
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 7056 caattcacaagcaccagaaggatgacctcgcaggcaccgacttggaacagatcgaccccg 6997
Query: 688 ctttcggttctaaggaagattttgacagtctcctgcaatcggccaagaaaaagag 742
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6996 ctttcggttctaaggaagattttgacagtctcctgcaatcggccaagaaaaagag 6942
Score = 295 bits (149), Expect = 5e-77
Identities = 158/161 (98%)
Strand = Plus / Minus
Query: 984 gactcctccgacctacagcagatcctgagcctcctcgaacccaccaaggacctgttgtta 1043
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4083 gactcctccgacctacagcagatcctgagcctcctcgaacccaccaaggacctgttgtta 4024
Query: 1044 actagctcgtacctgtccaactcctctttcacggggaagcaaaccagtttcctggtcaca 1103
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4023 actagctcgtacctgtccaactcctctttcacggggaagcaaaccagtttcctggtcacg 3964
Query: 1104 cagtatttgaacgccactggcagtcgctggtgcagttggag 1144
||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 3963 cagtatttgaatgccactggcagtcgctggtgcagctggag 3923
Score = 238 bits (120), Expect = 9e-60
Identities = 126/128 (98%)
Strand = Plus / Minus
Query: 1146 ttgtcgcaggcggggcttctgacctcctctgtgccgtctcacctcctccggctctaccag 1205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3612 ttgtcgcaggcggggcttctgacctcctctgtgccgtctcacctcctccggctctaccag 3553
Query: 1206 ctgctgctcttcactctgccggggaccccagtgttcagctatggagacgagattggcctg 1265
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 3552 ctgctgctcctcactctgccggggaccccagtgttcagctacggagacgagattggcctg 3493
Query: 1266 gaggaagc 1273
||||||||
Sbjct: 3492 gaggaagc 3485
Score = 190 bits (96), Expect = 2e-45
Identities = 96/96 (100%)
Strand = Plus / Minus
Query: 742 gcatccgggtcattctagacctcactcccaactataagggccagaactcatggttcgact 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6365 gcatccgggtcattctagacctcactcccaactataagggccagaactcatggttcgact 6306
Query: 802 ccactcaggtggacactgtggctgccaagatgaagg 837
||||||||||||||||||||||||||||||||||||
Sbjct: 6305 ccactcaggtggacactgtggctgccaagatgaagg 6270
Score = 174 bits (88), Expect = 1e-40
Identities = 88/88 (100%)
Strand = Plus / Minus
Query: 252 ggccccgagaagaatggtctggtgaagattaaggtggccgacgatgaggcagacgcggca 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7660 ggccccgagaagaatggtctggtgaagattaaggtggccgacgatgaggcagacgcggca 7601
Query: 312 gcagccaagttcacgggcctgtctaaag 339
||||||||||||||||||||||||||||
Sbjct: 7600 gcagccaagttcacgggcctgtctaaag 7573
Score = 151 bits (76), Expect = 2e-33
Identities = 87/90 (96%), Gaps = 3/90 (3%)
Strand = Plus / Minus
Query: 1288 agcctgtgaaggccccggtcatgccatgggatgaatccagccttcccagcaccttaggac 1347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2216 agcctgtgaaggccccggtcatgccatgggatgaatccagccttcccagcaccttaggac 2157
Query: 1348 ctgtaaacagcagcagcgtgactgtgaagg 1377
|||||||||| |||||||||||||||||
Sbjct: 2156 ctgtaaacag---cagcgtgactgtgaagg 2130
Score = 121 bits (61), Expect = 1e-24
Identities = 64/65 (98%)
Strand = Plus / Minus
Query: 1814 actgttacagataaactcccaaatagggcattttctgcttcaaataaatgtcagccctgc 1873
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1480 actgttacagatgaactcccaaatagggcattttctgcttcaaataaatgtcagccctgc 1421
Query: 1874 ctggt 1878
|||||
Sbjct: 1420 ctggt 1416
Score = 115 bits (58), Expect = 9e-23
Identities = 58/58 (100%)
Strand = Plus / Minus
Query: 124 tcgccggttctgcaggcaccatgagccaggacaccgaggtggacatgaaggaagtgga 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7818 tcgccggttctgcaggcaccatgagccaggacaccgaggtggacatgaaggaagtgga 7761
Score = 99.6 bits (50), Expect = 5e-18
Identities = 53/54 (98%)
Strand = Plus / Minus
Query: 1667 cctgaacctggagccctatgaggggctgctgctccgcttcccctatgtggcctg 1720
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Sbjct: 1661 cctgaacctggggccctatgaggggctgctgctccgcttcccctatgtggcctg 1608
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 42,982,197
Number of extensions: 260
Number of successful extensions: 260
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 258
Number of HSP's successfully gapped: 20
Length of query: 1901
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1879
Effective length of database: 2,808,408,574
Effective search space: 5276999710546
Effective search space used: 5276999710546
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)