Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MLN01_0094_A06
(1046 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776447.1| clathrin light chain A [Bos taurus]. 355 3e-98
Alignment gi|NP_776702.1| clathrin light chain B [Bos taurus]. 245 5e-65
>ref|NP_776447.1| clathrin light chain A [Bos taurus].
Length = 243
Score = 355 bits (912), Expect = 3e-98
Identities = 190/243 (78%), Positives = 194/243 (79%), Gaps = 31/243 (12%)
Frame = +2
Query: 110 MADLDPFGAPAG-PSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDXXXXXXXXX 286
MA+LDPFG PAG P+LGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGVPAGGPALGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAPGSQPH 60
Query: 287 XXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALD 466
DAVDGV NG+YYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALD
Sbjct: 61 GEPPGIPDAVDGVTNGDYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALD 120
Query: 467 ANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR----------------------- 577
ANSRKQEAEWKEKAIKEL+EWYARQDEQLQKTKANNR
Sbjct: 121 ANSRKQEAEWKEKAIKELDEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYVTNINH 180
Query: 578 -------AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAP 736
AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAP
Sbjct: 181 PCYSLEQAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAP 240
Query: 737 LVH 745
LVH
Sbjct: 241 LVH 243
>ref|NP_776702.1| clathrin light chain B [Bos taurus].
Length = 210
Score = 245 bits (625), Expect = 5e-65
Identities = 124/206 (60%), Positives = 147/206 (71%)
Frame = +2
Query: 122 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDXXXXXXXXXXXXXX 301
D FG + G A EEDPAAAFLAQQESEIAGIENDE F
Sbjct: 3 DDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSQGGLAQPGPASG 62
Query: 302 XXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSRK 481
+ + +NG+ +QE+NGP D YAAI+Q DRL EPESIRKWREEQ +RL+ LDA S+
Sbjct: 63 ASEDMGATVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKV 122
Query: 482 QEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCDF 661
E EW+EKA K+LEEW RQ EQ++K K NNRA+EEAFV + +E +PGTEWE+VA+LCDF
Sbjct: 123 MEQEWREKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQLCDF 182
Query: 662 NPKSSKQAKDVSRMRSVLISLKQAPL 739
NPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 183 NPKSSKQCKDVSRLRSVLMSLKQTPL 208
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 31,085,430
Number of extensions: 736510
Number of successful extensions: 3414
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3385
Number of HSP's successfully gapped: 2
Length of query: 348
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 245
Effective length of database: 14,273,310
Effective search space: 3496960950
Effective search space used: 3496960950
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MLN01_0094_A06
(1046 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_866787.1| PREDICTED: similar to clathrin, light polypepti... 370 e-102
Alignment gi|XP_866825.1| PREDICTED: similar to Clathrin light chain A (L... 360 2e-99
Alignment gi|XP_866761.1| PREDICTED: similar to Clathrin light chain A (L... 359 3e-99
Alignment gi|XP_531996.2| PREDICTED: similar to Clathrin light chain A (L... 354 7e-98
Alignment gi|XP_866835.1| PREDICTED: similar to clathrin, light polypepti... 265 4e-71
Alignment gi|XP_866066.1| PREDICTED: similar to clathrin, light polypepti... 242 4e-64
Alignment gi|XP_866115.1| PREDICTED: similar to clathrin, light polypepti... 241 8e-64
Alignment gi|XP_866083.1| PREDICTED: similar to clathrin, light polypepti... 239 2e-63
Alignment gi|XP_866050.1| PREDICTED: similar to clathrin, light polypepti... 239 2e-63
Alignment gi|XP_866801.1| PREDICTED: similar to Clathrin light chain A (L... 236 3e-62
>ref|XP_866787.1| PREDICTED: similar to clathrin, light polypeptide A isoform a
isoform 3 [Canis familiaris].
Length = 218
Score = 370 bits (950), Expect = e-102
Identities = 193/218 (88%), Positives = 196/218 (89%), Gaps = 6/218 (2%)
Frame = +2
Query: 110 MADLDPFGAPA----GPSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 271
MA+LDPFGAPA GP+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPASAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 272 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 451
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER
Sbjct: 61 GPQPHGEPPGVPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 120
Query: 452 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTE 631
LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDI+ESSPGTE
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIDESSPGTE 180
Query: 632 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 745
WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 218
>ref|XP_866825.1| PREDICTED: similar to Clathrin light chain A (Lca) isoform 6 [Canis
familiaris].
Length = 230
Score = 360 bits (923), Expect = 2e-99
Identities = 192/230 (83%), Positives = 196/230 (85%), Gaps = 18/230 (7%)
Frame = +2
Query: 110 MADLDPFGAPA----GPSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 271
MA+LDPFGAPA GP+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPASAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 272 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 451
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER
Sbjct: 61 GPQPHGEPPGVPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 120
Query: 452 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANN------------RAAEEAF 595
LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANN +AAEEAF
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNSTNINHPCYSLEQAAEEAF 180
Query: 596 VNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 745
VNDI+ESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 VNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 230
>ref|XP_866761.1| PREDICTED: similar to Clathrin light chain A (Lca) isoform 2 [Canis
familiaris].
Length = 236
Score = 359 bits (921), Expect = 3e-99
Identities = 193/236 (81%), Positives = 196/236 (83%), Gaps = 24/236 (10%)
Frame = +2
Query: 110 MADLDPFGAPA----GPSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 271
MA+LDPFGAPA GP+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPASAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 272 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 451
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER
Sbjct: 61 GPQPHGEPPGVPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 120
Query: 452 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------ 577
LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYV 180
Query: 578 AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 745
AAEEAFVNDI+ESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 AAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 236
>ref|XP_531996.2| PREDICTED: similar to Clathrin light chain A (Lca) isoform 1 [Canis
familiaris].
Length = 248
Score = 354 bits (909), Expect = 7e-98
Identities = 193/248 (77%), Positives = 196/248 (79%), Gaps = 36/248 (14%)
Frame = +2
Query: 110 MADLDPFGAPA----GPSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 271
MA+LDPFGAPA GP+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPASAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 272 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 451
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER
Sbjct: 61 GPQPHGEPPGVPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 120
Query: 452 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------ 577
LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYV 180
Query: 578 ------------AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS 721
AAEEAFVNDI+ESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS
Sbjct: 181 TNINHPCYSLEQAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS 240
Query: 722 LKQAPLVH 745
LKQAPLVH
Sbjct: 241 LKQAPLVH 248
>ref|XP_866835.1| PREDICTED: similar to clathrin, light polypeptide A isoform a
isoform 7 [Canis familiaris].
Length = 139
Score = 265 bits (678), Expect = 4e-71
Identities = 132/134 (98%), Positives = 134/134 (100%)
Frame = +2
Query: 344 QESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELE 523
+ESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELE
Sbjct: 6 RESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELE 65
Query: 524 EWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRM 703
EWYARQDEQLQKTKANNRAAEEAFVNDI+ESSPGTEWERVARLCDFNPKSSKQAKDVSRM
Sbjct: 66 EWYARQDEQLQKTKANNRAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRM 125
Query: 704 RSVLISLKQAPLVH 745
RSVLISLKQAPLVH
Sbjct: 126 RSVLISLKQAPLVH 139
>ref|XP_866066.1| PREDICTED: similar to clathrin, light polypeptide isoform a isoform
3 [Canis familiaris].
Length = 207
Score = 242 bits (618), Expect = 4e-64
Identities = 124/206 (60%), Positives = 149/206 (72%)
Frame = +2
Query: 122 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDXXXXXXXXXXXXXX 301
D FG + G A EEDPAAAFLAQQESEIAGIENDE F + +
Sbjct: 3 DDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGLSNGYCHVFVLSLAGS- 61
Query: 302 XXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSRK 481
+ + +NG+ +QE+NGP D YAAI+Q DRL EPESIRKWREEQ +RL+ LDA S+
Sbjct: 62 --EDMGTTINGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKV 119
Query: 482 QEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCDF 661
E EW+EKA K+LEEW RQ EQ++K K NNRA+EEAFV + +E +PGTEWE+VA+LCDF
Sbjct: 120 TEQEWREKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQLCDF 179
Query: 662 NPKSSKQAKDVSRMRSVLISLKQAPL 739
NPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 180 NPKSSKQCKDVSRLRSVLMSLKQTPL 205
>ref|XP_866115.1| PREDICTED: similar to clathrin, light polypeptide isoform a isoform
5 [Canis familiaris].
Length = 211
Score = 241 bits (615), Expect = 8e-64
Identities = 125/207 (60%), Positives = 148/207 (71%), Gaps = 1/207 (0%)
Frame = +2
Query: 122 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAF-AILDXXXXXXXXXXXXX 298
D FG + G A EEDPAAAFLAQQESEIAGIENDE F A
Sbjct: 3 DDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSHAALAQPGPAGG 62
Query: 299 XXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSR 478
+ + +NG+ +QE+NGP D YAAI+Q DRL EPESIRKWREEQ +RL+ LDA S+
Sbjct: 63 AGSEDMGTTINGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASK 122
Query: 479 KQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCD 658
E EW+EKA K+LEEW RQ EQ++K K NNRA+EEAFV + +E +PGTEWE+VA+LCD
Sbjct: 123 VTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQLCD 182
Query: 659 FNPKSSKQAKDVSRMRSVLISLKQAPL 739
FNPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 183 FNPKSSKQCKDVSRLRSVLMSLKQTPL 209
>ref|XP_866083.1| PREDICTED: similar to clathrin, light polypeptide isoform a isoform
4 [Canis familiaris].
Length = 213
Score = 239 bits (611), Expect = 2e-63
Identities = 125/209 (59%), Positives = 148/209 (70%), Gaps = 3/209 (1%)
Frame = +2
Query: 122 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAF---AILDXXXXXXXXXXX 292
D FG + G A EEDPAAAFLAQQESEIAGIENDE F A
Sbjct: 3 DDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSHAALAHASACPP 62
Query: 293 XXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDAN 472
+ + +NG+ +QE+NGP D YAAI+Q DRL EPESIRKWREEQ +RL+ LDA
Sbjct: 63 STAGSEDMGTTINGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAA 122
Query: 473 SRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARL 652
S+ E EW+EKA K+LEEW RQ EQ++K K NNRA+EEAFV + +E +PGTEWE+VA+L
Sbjct: 123 SKVTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQL 182
Query: 653 CDFNPKSSKQAKDVSRMRSVLISLKQAPL 739
CDFNPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 183 CDFNPKSSKQCKDVSRLRSVLMSLKQTPL 211
>ref|XP_866050.1| PREDICTED: similar to clathrin, light polypeptide isoform a isoform
2 [Canis familiaris].
Length = 208
Score = 239 bits (611), Expect = 2e-63
Identities = 124/206 (60%), Positives = 146/206 (70%)
Frame = +2
Query: 122 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDXXXXXXXXXXXXXX 301
D FG + G A EEDPAAAFLAQQESEIAGIENDE F
Sbjct: 3 DDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGA--PAGNSGEEEGPRYG 60
Query: 302 XXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSRK 481
+ +NG+ +QE+NGP D YAAI+Q DRL EPESIRKWREEQ +RL+ LDA S+
Sbjct: 61 PLGDMGTTINGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKV 120
Query: 482 QEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCDF 661
E EW+EKA K+LEEW RQ EQ++K K NNRA+EEAFV + +E +PGTEWE+VA+LCDF
Sbjct: 121 TEQEWREKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQLCDF 180
Query: 662 NPKSSKQAKDVSRMRSVLISLKQAPL 739
NPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 181 NPKSSKQCKDVSRLRSVLMSLKQTPL 206
>ref|XP_866801.1| PREDICTED: similar to Clathrin light chain A (Lca) isoform 4 [Canis
familiaris].
Length = 178
Score = 236 bits (601), Expect = 3e-62
Identities = 144/230 (62%), Positives = 150/230 (65%), Gaps = 18/230 (7%)
Frame = +2
Query: 110 MADLDPFGAPA----GPSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 271
MA+LDPFGAPA GP+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAIL
Sbjct: 1 MAELDPFGAPASAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAIL----- 55
Query: 272 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 451
DG G + EP +
Sbjct: 56 ---------------DGGAPGP-------------------QPHGEPPGVP--------- 72
Query: 452 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANN------------RAAEEAF 595
DANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANN +AAEEAF
Sbjct: 73 ----DANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNSTNINHPCYSLEQAAEEAF 128
Query: 596 VNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 745
VNDI+ESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 129 VNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 178
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 32,414,282
Number of extensions: 747562
Number of successful extensions: 3770
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 3685
Number of HSP's successfully gapped: 14
Length of query: 348
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 244
Effective length of database: 15,407,560
Effective search space: 3759444640
Effective search space used: 3759444640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA MLN01_0094_A06
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MLN01_0094_A06
(1046 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001073853.1| clathrin light chain A isoform a [Mus muscul... 369 e-102
Alignment gi|NP_001073855.1| clathrin light chain A isoform d [Mus muscul... 365 e-101
Alignment gi|NP_058040.2| clathrin light chain A isoform c [Mus musculus]. 358 5e-99
Alignment gi|NP_001073854.1| clathrin light chain A isoform b [Mus muscul... 353 1e-97
Alignment gi|NP_083146.1| clathrin light chain B [Mus musculus]. 237 1e-62
>ref|NP_001073853.1| clathrin light chain A isoform a [Mus musculus].
Length = 218
Score = 369 bits (947), Expect = e-102
Identities = 192/218 (88%), Positives = 196/218 (89%), Gaps = 6/218 (2%)
Frame = +2
Query: 110 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 271
MA+LDPFGAPAG P+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 272 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 451
DAVDGVMNGEYYQESNGPTDSYAAIS+VDRLQSEPESIRKWREEQTER
Sbjct: 61 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISEVDRLQSEPESIRKWREEQTER 120
Query: 452 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTE 631
LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDI+ESSPGTE
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIDESSPGTE 180
Query: 632 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 745
WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 218
>ref|NP_001073855.1| clathrin light chain A isoform d [Mus musculus].
Length = 216
Score = 365 bits (936), Expect = e-101
Identities = 192/218 (88%), Positives = 196/218 (89%), Gaps = 6/218 (2%)
Frame = +2
Query: 110 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 271
MA+LDPFGAPAG P+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 272 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 451
DAVDGVMNGEYYQESNGPTDSYAAIS+VDRLQSEPESIRKWREEQTER
Sbjct: 61 GPQPHGEPPG--DAVDGVMNGEYYQESNGPTDSYAAISEVDRLQSEPESIRKWREEQTER 118
Query: 452 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTE 631
LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDI+ESSPGTE
Sbjct: 119 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIDESSPGTE 178
Query: 632 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 745
WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 179 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 216
>ref|NP_058040.2| clathrin light chain A isoform c [Mus musculus].
Length = 236
Score = 358 bits (918), Expect = 5e-99
Identities = 192/236 (81%), Positives = 196/236 (83%), Gaps = 24/236 (10%)
Frame = +2
Query: 110 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 271
MA+LDPFGAPAG P+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 272 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 451
DAVDGVMNGEYYQESNGPTDSYAAIS+VDRLQSEPESIRKWREEQTER
Sbjct: 61 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISEVDRLQSEPESIRKWREEQTER 120
Query: 452 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------ 577
LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADLIGYV 180
Query: 578 AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 745
AAEEAFVNDI+ESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 AAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 236
>ref|NP_001073854.1| clathrin light chain A isoform b [Mus musculus].
Length = 248
Score = 353 bits (906), Expect = 1e-97
Identities = 192/248 (77%), Positives = 196/248 (79%), Gaps = 36/248 (14%)
Frame = +2
Query: 110 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 271
MA+LDPFGAPAG P+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 272 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 451
DAVDGVMNGEYYQESNGPTDSYAAIS+VDRLQSEPESIRKWREEQTER
Sbjct: 61 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISEVDRLQSEPESIRKWREEQTER 120
Query: 452 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------ 577
LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADLIGYV 180
Query: 578 ------------AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS 721
AAEEAFVNDI+ESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS
Sbjct: 181 TNINHPCYSLEQAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS 240
Query: 722 LKQAPLVH 745
LKQAPLVH
Sbjct: 241 LKQAPLVH 248
>ref|NP_083146.1| clathrin light chain B [Mus musculus].
Length = 211
Score = 237 bits (605), Expect = 1e-62
Identities = 123/207 (59%), Positives = 147/207 (71%), Gaps = 1/207 (0%)
Frame = +2
Query: 122 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAF-AILDXXXXXXXXXXXXX 298
+ FG + G A EEDPAAAFLAQQESEIAGIEND F A
Sbjct: 3 EDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDPGFGAPAASQVASAQPGLASG 62
Query: 299 XXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSR 478
+ + +NG+ +QE+NGP D YAAI+Q DRL EPESIRKWREEQ +RL+ LDA S+
Sbjct: 63 AGSEDMSTTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQKKRLQELDAASK 122
Query: 479 KQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCD 658
E EW+EKA K+LEEW RQ EQ++K K NNRA+EEAFV + +E +PGTEWE+VA+LCD
Sbjct: 123 VTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQLCD 182
Query: 659 FNPKSSKQAKDVSRMRSVLISLKQAPL 739
FNPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 183 FNPKSSKQCKDVSRLRSVLMSLKQTPL 209
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 26,914,060
Number of extensions: 614167
Number of successful extensions: 2941
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2886
Number of HSP's successfull
Animal-Genome cDNA MLN01_0094_A06
Animal-Genome cDNA MLN01_0094_A06
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MLN01_0094_A06
(1046 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001824.1| clathrin light chain A isoform a [Homo sapiens]. 368 e-102
Alignment gi|NP_001171689.1| clathrin light chain A isoform d [Homo sapie... 357 8e-99
Alignment gi|NP_001070145.1| clathrin light chain A isoform c [Homo sapie... 357 1e-98
Alignment gi|NP_009027.1| clathrin light chain A isoform b [Homo sapiens]. 352 3e-97
Alignment gi|NP_001171690.1| clathrin light chain A isoform e [Homo sapie... 258 6e-69
Alignment gi|NP_001825.1| clathrin light chain B isoform a [Homo sapiens]. 241 8e-64
Alignment gi|NP_009028.1| clathrin light chain B isoform b [Homo sapiens]. 230 2e-60
Alignment gi|NP_001171691.1| clathrin light chain A isoform f [Homo sapie... 225 5e-59
>ref|NP_001824.1| clathrin light chain A isoform a [Homo sapiens].
Length = 218
Score = 368 bits (944), Expect = e-102
Identities = 192/218 (88%), Positives = 195/218 (89%), Gaps = 6/218 (2%)
Frame = +2
Query: 110 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 271
MA+LDPFGAPAG P+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 272 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 451
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQ ER
Sbjct: 61 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER 120
Query: 452 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTE 631
LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDI+ESSPGTE
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIDESSPGTE 180
Query: 632 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 745
WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 218
>ref|NP_001171689.1| clathrin light chain A isoform d [Homo sapiens].
Length = 230
Score = 357 bits (917), Expect = 8e-99
Identities = 191/230 (83%), Positives = 195/230 (84%), Gaps = 18/230 (7%)
Frame = +2
Query: 110 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 271
MA+LDPFGAPAG P+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 272 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 451
y gapped: 5
Length of query: 348
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 246
Effective length of database: 12,553,887
Effective search space: 3088256202
Effective search space used: 3088256202
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQ ER
Sbjct: 61 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER 120
Query: 452 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANN------------RAAEEAF 595
LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANN +AAEEAF
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNSTNINHPCYSLEQAAEEAF 180
Query: 596 VNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 745
VNDI+ESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 VNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 230
>ref|NP_001070145.1| clathrin light chain A isoform c [Homo sapiens].
Length = 236
Score = 357 bits (915), Expect = 1e-98
Identities = 192/236 (81%), Positives = 195/236 (82%), Gaps = 24/236 (10%)
Frame = +2
Query: 110 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 271
MA+LDPFGAPAG P+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 272 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 451
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQ ER
Sbjct: 61 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER 120
Query: 452 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------ 577
LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYV 180
Query: 578 AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 745
AAEEAFVNDI+ESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 AAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 236
>ref|NP_009027.1| clathrin light chain A isoform b [Homo sapiens].
Length = 248
Score = 352 bits (903), Expect = 3e-97
Identities = 192/248 (77%), Positives = 195/248 (78%), Gaps = 36/248 (14%)
Frame = +2
Query: 110 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 271
MA+LDPFGAPAG P+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 272 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 451
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQ ER
Sbjct: 61 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER 120
Query: 452 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------ 577
LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYV 180
Query: 578 ------------AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS 721
AAEEAFVNDI+ESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS
Sbjct: 181 TNINHPCYSLEQAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS 240
Query: 722 LKQAPLVH 745
LKQAPLVH
Sbjct: 241 LKQAPLVH 248
>ref|NP_001171690.1| clathrin light chain A isoform e [Homo sapiens].
Length = 168
Score = 258 bits (659), Expect = 6e-69
Identities = 136/161 (84%), Positives = 138/161 (85%), Gaps = 6/161 (3%)
Frame = +2
Query: 110 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 271
MA+LDPFGAPAG P+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 272 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 451
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQ ER
Sbjct: 61 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER 120
Query: 452 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANN 574
LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANN
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANN 161
>ref|NP_001825.1| clathrin light chain B isoform a [Homo sapiens].
Length = 211
Score = 241 bits (615), Expect = 8e-64
Identities = 125/207 (60%), Positives = 148/207 (71%), Gaps = 1/207 (0%)
Frame = +2
Query: 122 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAF-AILDXXXXXXXXXXXXX 298
D FG + G A EEDPAAAFLAQQESEIAGIENDE F A
Sbjct: 3 DDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSHAAPAQPGPTSG 62
Query: 299 XXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSR 478
+ + +NG+ +QE+NGP D YAAI+Q DRL EPESIRKWREEQ +RL+ LDA S+
Sbjct: 63 AGSEDMGTTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASK 122
Query: 479 KQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCD 658
E EW+EKA K+LEEW RQ EQ++K K NNRA+EEAFV + +E +PGTEWE+VA+LCD
Sbjct: 123 VTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQLCD 182
Query: 659 FNPKSSKQAKDVSRMRSVLISLKQAPL 739
FNPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 183 FNPKSSKQCKDVSRLRSVLMSLKQTPL 209
>ref|NP_009028.1| clathrin light chain B isoform b [Homo sapiens].
Length = 229
Score = 230 bits (586), Expect = 2e-60
Identities = 125/225 (55%), Positives = 148/225 (65%), Gaps = 19/225 (8%)
Frame = +2
Query: 122 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAF-AILDXXXXXXXXXXXXX 298
D FG + G A EEDPAAAFLAQQESEIAGIENDE F A
Sbjct: 3 DDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSHAAPAQPGPTSG 62
Query: 299 XXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSR 478
+ + +NG+ +QE+NGP D YAAI+Q DRL EPESIRKWREEQ +RL+ LDA S+
Sbjct: 63 AGSEDMGTTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASK 122
Query: 479 KQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------AAEEAFVND 604
E EW+EKA K+LEEW RQ EQ++K K NNR A+EEAFV +
Sbjct: 123 VTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADIIGYVASEEAFVKE 182
Query: 605 IEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPL 739
+E +PGTEWE+VA+LCDFNPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 183 SKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPL 227
>ref|NP_001171691.1| clathrin light chain A isoform f [Homo sapiens].
Length = 166
Score = 225 bits (574), Expect = 5e-59
Identities = 135/218 (61%), Positives = 142/218 (65%), Gaps = 6/218 (2%)
Frame = +2
Query: 110 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 271
MA+LDPFGAPAG P+LGNGVAG EEDPAAAFLAQQESEIA
Sbjct: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIA---------------- 44
Query: 272 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 451
G+ N E + +G + EP
Sbjct: 45 ----------------GIENDEAFAILDGGAPG-------PQPHGEPPG----------- 70
Query: 452 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTE 631
DANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDI+ESSPGTE
Sbjct: 71 --GPDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIDESSPGTE 128
Query: 632 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 745
WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 129 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 166
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 31,764,753
Number of extensions: 733521
Number of successful extensions: 3678
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 3576
Number of HSP's successfully gapped: 9
Length of query: 348
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 245
Effective length of database: 14,901,872
Effective search space: 3650958640
Effective search space used: 3650958640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MLN01_0094_A06
(1046 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122048.1| PREDICTED: clathrin light chain A isoform 1 ... 385 e-107
Alignment gi|XP_003122049.1| PREDICTED: clathrin light chain A isoform 2 ... 374 e-104
Alignment gi|XP_003122050.1| PREDICTED: clathrin light chain A isoform 3 ... 374 e-104
Alignment gi|XP_003122051.1| PREDICTED: clathrin light chain A isoform 4 ... 369 e-102
Alignment gi|XP_003353620.1| PREDICTED: clathrin light chain A [Sus scrof... 240 1e-63
Alignment gi|XP_003354235.1| PREDICTED: clathrin light chain B-like isofo... 238 3e-63
Alignment gi|XP_003123718.2| PREDICTED: clathrin light chain B-like isofo... 227 7e-60
>ref|XP_003122048.1| PREDICTED: clathrin light chain A isoform 1 [Sus scrofa].
Length = 212
Score = 385 bits (988), Expect = e-107
Identities = 196/212 (92%), Positives = 196/212 (92%)
Frame = +2
Query: 110 MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDXXXXXXXXXX 289
MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAPGPQPHG 60
Query: 290 XXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA 469
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA
Sbjct: 61 EPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA 120
Query: 470 NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVAR 649
NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVAR
Sbjct: 121 NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVAR 180
Query: 650 LCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 745
LCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 LCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 212
>ref|XP_003122049.1| PREDICTED: clathrin light chain A isoform 2 [Sus scrofa].
Length = 224
Score = 374 bits (961), Expect = e-104
Identities = 195/224 (87%), Positives = 196/224 (87%), Gaps = 12/224 (5%)
Frame = +2
Query: 110 MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDXXXXXXXXXX 289
MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAPGPQPHG 60
Query: 290 XXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA 469
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA
Sbjct: 61 EPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA 120
Query: 470 NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANN------------RAAEEAFVNDIEE 613
NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANN +AAEEAFVNDIEE
Sbjct: 121 NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNSTNINHPCYSLEQAAEEAFVNDIEE 180
Query: 614 SSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 745
SSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 SSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 224
>ref|XP_003122050.1| PREDICTED: clathrin light chain A isoform 3 [Sus scrofa].
Length = 230
Score = 374 bits (959), Expect = e-104
Identities = 196/230 (85%), Positives = 196/230 (85%), Gaps = 18/230 (7%)
Frame = +2
Query: 110 MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDXXXXXXXXXX 289
MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAPGPQPHG 60
Query: 290 XXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA 469
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA
Sbjct: 61 EPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA 120
Query: 470 NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------AAEEAF 595
NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR AAEEAF
Sbjct: 121 NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYVAAEEAF 180
Query: 596 VNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 745
VNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 VNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 230
>ref|XP_003122051.1| PREDICTED: clathrin light chain A isoform 4 [Sus scrofa].
Length = 242
Score = 369 bits (947), Expect = e-102
Identities = 196/242 (80%), Positives = 196/242 (80%), Gaps = 30/242 (12%)
Frame = +2
Query: 110 MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDXXXXXXXXXX 289
MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAPGPQPHG 60
Query: 290 XXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA 469
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA
Sbjct: 61 EPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA 120
Query: 470 NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------------ 577
NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR
Sbjct: 121 NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYVTNINHP 180
Query: 578 ------AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPL 739
AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPL
Sbjct: 181 CYSLEQAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPL 240
Query: 740 VH 745
VH
Sbjct: 241 VH 242
>ref|XP_003353620.1| PREDICTED: clathrin light chain A [Sus scrofa].
Length = 160
Score = 240 bits (612), Expect = 1e-63
Identities = 138/212 (65%), Positives = 142/212 (66%)
Frame = +2
Query: 110 MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDXXXXXXXXXX 289
MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIA
Sbjct: 1 MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIA---------------------- 38
Query: 290 XXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA 469
G+ N E + +G + EP DA
Sbjct: 39 ----------GIENDEAFAILDGGAPG-------PQPHGEPPG-------------GPDA 68
Query: 470 NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVAR 649
NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVAR
Sbjct: 69 NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVAR 128
Query: 650 LCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 745
LCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 129 LCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 160
>ref|XP_003354235.1| PREDICTED: clathrin light chain B-like isoform 2 [Sus scrofa].
Length = 211
Score = 238 bits (608), Expect = 3e-63
Identities = 123/207 (59%), Positives = 147/207 (71%), Gaps = 1/207 (0%)
Frame = +2
Query: 122 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAF-AILDXXXXXXXXXXXXX 298
D FG + G EEDPAAAFLAQQESEIAGIENDE F A
Sbjct: 3 DDFGFFSSSESGAPEVAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSQAALAQPGPASG 62
Query: 299 XXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSR 478
+ + +NG+ +Q++NGP D YAAI+Q DRL EPESIRKWREEQ +RL+ LDA S+
Sbjct: 63 AGPEDMGTTVNGDVFQDANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASK 122
Query: 479 KQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCD 658
E EW+EKA K+LEEW RQ EQ++K K NNRA+EEAFV + +E +PGTEWE+VA+LCD
Sbjct: 123 VTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQLCD 182
Query: 659 FNPKSSKQAKDVSRMRSVLISLKQAPL 739
FNPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 183 FNPKSSKQCKDVSRLRSVLMSLKQTPL 209
>ref|XP_003123718.2| PREDICTED: clathrin light chain B-like isoform 1 [Sus scrofa].
Length = 229
Score = 227 bits (579), Expect = 7e-60
Identities = 123/225 (54%), Positives = 147/225 (65%), Gaps = 19/225 (8%)
Frame = +2
Query: 122 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAF-AILDXXXXXXXXXXXXX 298
D FG + G EEDPAAAFLAQQESEIAGIENDE F A
Sbjct: 3 DDFGFFSSSESGAPEVAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSQAALAQPGPASG 62
Query: 299 XXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSR 478
+ + +NG+ +Q++NGP D YAAI+Q DRL EPESIRKWREEQ +RL+ LDA S+
Sbjct: 63 AGPEDMGTTVNGDVFQDANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASK 122
Query: 479 KQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------AAEEAFVND 604
E EW+EKA K+LEEW RQ EQ++K K NNR A+EEAFV +
Sbjct: 123 VTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADIIGYVASEEAFVKE 182
Query: 605 IEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPL 739
+E +PGTEWE+VA+LCDFNPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 183 SKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPL 227
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 20,153,475
Number of extensions: 491987
Number of successful extensions: 2210
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2168
Number of HSP's successfully gapped: 8
Length of query: 348
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 248
Effective length of database: 8,854,232
Effective search space: 2195849536
Effective search space used: 2195849536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MLN01_0094_A06
(1046 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 611 e-172
Sscrofa_Chr14 125 5e-26
Sscrofa_Chr17 107 1e-20
Sscrofa_Chr02 66 4e-08
>Sscrofa_Chr01
|| Length = 315321322
Score = 611 bits (308), Expect = e-172
Identities = 308/308 (100%)
Strand = Plus / Plus
Query: 1 gcttgtcctccggtcgcgttgccaccacagcggccgctgccgggcgcggttacggcgggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264772807 gcttgtcctccggtcgcgttgccaccacagcggccgctgccgggcgcggttacggcgggt 264772866
Query: 61 cggttggtgtgtctttcagcgtcgatttctgtgcagttgaacgcctgccatggctgattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264772867 cggttggtgtgtctttcagcgtcgatttctgtgcagttgaacgcctgccatggctgattt 264772926
Query: 121 agatccgttcggcgcccccgccggcccctcgctggggaacggagtggccggcgaggagga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264772927 agatccgttcggcgcccccgccggcccctcgctggggaacggagtggccggcgaggagga 264772986
Query: 181 cccggccgcggccttcttggcgcagcaggagagcgagattgctggcatcgagaacgacga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264772987 cccggccgcggccttcttggcgcagcaggagagcgagattgctggcatcgagaacgacga 264773046
Query: 241 ggccttcgccatcctggacggaggcgctcctgggccccagccgcacggcgagccgccggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264773047 ggccttcgccatcctggacggaggcgctcctgggccccagccgcacggcgagccgccggg 264773106
Query: 301 gggtccgg 308
||||||||
Sbjct: 264773107 gggtccgg 264773114
Score = 561 bits (283), Expect = e-157
Identities = 354/375 (94%), Gaps = 7/375 (1%)
Strand = Plus / Plus
Query: 656 gactttaaccccaagtccagcaagcaggccaaagatgtctcccgcatgcgttctgtcctc 715
||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||
Sbjct: 259949920 gactttaaccccaagtccagcaagcaggccaaagatgtctctcacatgtgttctgtcctc 259949979
Query: 716 atctccctcaagcagg-cccccctggtgcactgaagagccaccatgtggaaacactacat 774
| ||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 259949980 agctctctcaagcaggtcccccctggtgcactgaagagccacgctgtggaaacactacat 259950039
Query: 775 ctgcaatatcttaatcctactcagtgaagctcttcacagtaattggattaattatgttga 834
|| |||||||||| ||||||| ||||||||||||||||||||||||||||||| | ||||
Sbjct: 259950040 cttcaatatcttactcctacttagtgaagctcttcacagtaattggattaattttattga 259950099
Query: 835 gttcttttggaccaaacctttttgtctttagagttgatcattgtttgtgattgcatgttt 894
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 259950100 gttcttttggaccaaacctttt-gcctttagagttgatcattgtttgtgattgcatgttt 259950158
Query: 895 ccttcaactgtgttctccctggcattcagagaggagcggaggcgcccagggaagggaggg 954
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 259950159 ccttcaactgtgttctccctggcattcagagaggagaggaggcgcccagggaagggaggg 259950218
Query: 955 aggcctcccaagggcagcctcaacctctgcttttgtgc-----attattctgagaataaa 1009
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 259950219 aggcctcccaagggcagcctcaacctctgcttttgtgcataggattattctgagaataaa 259950278
Query: 1010 tttctgtttaaaact 1024
|||||||||||||||
Sbjct: 259950279 tttctgtttaaaact 259950293
Score = 238 bits (120), Expect = 5e-60
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 345 aggagagtaatgggccgacagacagttatgcagctatttcacaagtggatcgattgcagt 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264783240 aggagagtaatgggccgacagacagttatgcagctatttcacaagtggatcgattgcagt 264783299
Query: 405 cagagcctgaaagtatccgtaaatggagagaagagcaaacggaacgcttggaagcccttg 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264783300 cagagcctgaaagtatccgtaaatggagagaagagcaaacggaacgcttggaagcccttg 264783359
Score = 79.8 bits (40), Expect = 3e-12
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 308 gatgccgttgatggagtgatgaatggcgaatactaccagg 347
||||||||||||||||||||||||||||||||||||||||
Sbjct: 264780812 gatgccgttgatggagtgatgaatggcgaatactaccagg 264780851
>Sscrofa_Chr14
|| Length = 153851969
Score = 125 bits (63), Expect = 5e-26
Identities = 148/175 (84%), Gaps = 1/175 (0%)
Strand = Plus / Minus
Query: 762 ggaaacactacatctgcaatatcttaatcctactcagtgaagctcttcacagtaattgga 821
|||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||| |
Sbjct: 141192918 ggaaacactacatctgcagtatcttaatcctacttagtgacgctcttcacagtaattagg 141192859
Query: 822 ttaattatgttgagttcttttggaccaaacctttttgtctttagagttgatcattgtttg 881
| ||| ||||||| |||||| ||||| | || | |||||||| | || ||| |||||
Sbjct: 141192858 tgaatcatgttgaattctttcagaccaga-ctgtccgtctttagggctggtcagagtttg 141192800
Query: 882 tgattgcatgtttccttcaactgtgttctccctggcattcagagaggagcggagg 936
||||||||||||||| || ||||| || ||||||||||||||||||| |||||
Sbjct: 141192799 acattgcatgtttccttgaaatgtgtccttcctggcattcagagaggaggggagg 141192745
Score = 77.8 bits (39), Expect = 1e-11
Identities = 58/63 (92%), Gaps = 1/63 (1%)
Strand = Plus / Minus
Query: 620 ccaggcacggagtgggaacgggtggcccggctgtgtgactttaaccccaagtccagcaag 679
|||||||| |||||| ||| |||||||| |||||||| ||||||||||||||||||||||
Sbjct: 141193041 ccaggcactgagtgg-aacaggtggcccagctgtgtggctttaaccccaagtccagcaag 141192983
Query: 680 cag 682
|||
Sbjct: 141192982 cag 141192980
>Sscrofa_Chr17
|| Length = 69701581
Score = 107 bits (54), Expect = 1e-20
Identities = 113/129 (87%), Gaps = 4/129 (3%)
Strand = Plus / Minus
Query: 786 taatcctactcagtgaagctcttcacagtaattggattaattatgttgagttc-ttttgg 844
||||||| |||||||||| ||||||||| ||||||||||||||||||||||| ||| ||
Sbjct: 20461893 taatcctcctcagtgaagtgcttcacagtgattggattaattatgttgagttcatttcgg 20461834
Query: 845 accaaacctttttgtctttagagttgatcattgtttgtgattgcatgtttccttcaactg 904
|||||||| ||||||||| |||| |||||| |||||||||| ||| ||||||||| ||
Sbjct: 20461833 accaaacc-ttttgtcttcagagctgatcactgtttgtgatggca--cttccttcaagtg 20461777
Query: 905 tgttctccc 913
| |||||||
Sbjct: 20461776 tattctccc 20461768
>Sscrofa_Chr02
|| Length = 162569375
Score = 65.9 bits (33), Expect = 4e-08
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 172 cgaggaggacccggccgcggccttcttggcgcagcaggagagcgagattgctggcatcga 231
||||||||||||||| || |||||| |||| ||||||||||| || || || ||||| ||
Sbjct: 83066821 cgaggaggacccggcggctgccttcctggcccagcaggagagtgaaatcgcgggcataga 83066880
Query: 232 gaacgacgaggccttcg 248
||| ||||||| |||||
Sbjct: 83066881 gaatgacgagggcttcg 83066897
Score = 65.9 bits (33), Expect = 4e-08
Identities = 93/113 (82%)
Strand = Plus / Plus
Query: 618 ccccaggcacggagtgggaacgggtggcccggctgtgtgactttaaccccaagtccagca 677
||||||| || |||||||| |||||||| |||||||||||| ||||||||| |||||
Sbjct: 83135914 ccccaggtacagagtgggagaaggtggcccagctgtgtgacttcaaccccaagagcagca 83135973
Query: 678 agcaggccaaagatgtctcccgcatgcgttctgtcctcatctccctcaagcag 730
|||| |||||| || |||||| |||| || || ||||| ||||| ||||||
Sbjct: 83135974 agcaatgcaaagacgtgtcccgcctgcgctcggtgctcatgtccctgaagcag 83136026
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,658,264
Number of extensions: 254
Number of successful extensions: 254
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 251
Number of HSP's successfully gapped: 10
Length of query: 1046
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1025
Effective length of database: 2,808,413,156
Effective search space: 2878623484900
Effective search space used: 2878623484900
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)