Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVR01_0011_G02
(1487 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001074910.1| WD repeat domain 86 [Mus musculus]. 525 e-149
Alignment gi|NP_536353.2| F-box/WD repeat-containing protein 7 isoform 2 ... 145 8e-35
Alignment gi|NP_001171245.1| F-box/WD repeat-containing protein 7 isoform... 145 8e-35
Alignment gi|NP_001171244.1| F-box/WD repeat-containing protein 7 isoform... 145 8e-35
Alignment gi|NP_038653.1| platelet-activating factor acetylhydrolase IB s... 117 2e-26
Alignment gi|NP_081389.1| WD repeat-containing protein 5B [Mus musculus]. 115 7e-26
Alignment gi|NP_598776.1| F-box/WD repeat-containing protein 11 [Mus musc... 114 3e-25
Alignment gi|NP_001032847.2| F-box/WD repeat-containing protein 1A isofor... 114 3e-25
Alignment gi|NP_033901.1| F-box/WD repeat-containing protein 1A isoform b... 114 3e-25
Alignment gi|NP_796316.2| transcription initiation factor TFIID subunit 5... 111 1e-24
>ref|NP_001074910.1| WD repeat domain 86 [Mus musculus].
Length = 380
Score = 525 bits (1352), Expect = e-149
Identities = 250/282 (88%), Positives = 262/282 (92%)
Frame = +2
Query: 251 SALRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQL 430
SALRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWST DGQCCALLQGHESYVTFC L
Sbjct: 6 SALRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTVDGQCCALLQGHESYVTFCHL 65
Query: 431 EDEAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVD 610
EDEAAFTCSADCTIR+WDV TGQCLQV+RGHTSIVNRILV N+QLFSSSYDRTAR W+VD
Sbjct: 66 EDEAAFTCSADCTIRRWDVRTGQCLQVYRGHTSIVNRILVANDQLFSSSYDRTARVWTVD 125
Query: 611 KGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCC 790
KGQVS+EFRGHRNCVLTLAYSAP DLP PC+E A+ GGLLVTGS+D TAKVWQVASGCC
Sbjct: 126 KGQVSQEFRGHRNCVLTLAYSAPEDLPQDPCMEAAMGGGLLVTGSSDDTAKVWQVASGCC 185
Query: 791 HQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQGSIICLELVN 970
HQTLRGHTGAVLCLVL HTAFTGSTDAT+RAWDILSGE LRVFREHQGS+ICLEL +
Sbjct: 186 HQTLRGHTGAVLCLVLHVSSHTAFTGSTDATVRAWDILSGEQLRVFREHQGSVICLELTD 245
Query: 971 RHVYSGSADRTVKCWLADTGERVRTFAAHRHSVSALKYHAGT 1096
R +YSGSADRTVKCWLADTGERV TF AHRHSVSALKYHAGT
Sbjct: 246 RLLYSGSADRTVKCWLADTGERVLTFPAHRHSVSALKYHAGT 287
Score = 76.3 bits (186), Expect = 6e-14
Identities = 50/170 (29%), Positives = 71/170 (41%), Gaps = 3/170 (1%)
Frame = +2
Query: 275 HRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTC 454
H G + L L TGS D T R W G+ + + H+ V +L D ++
Sbjct: 192 HTGAVLCLVLHVSSHTAFTGSTDATVRAWDILSGEQLRVFREHQGSVICLELTDRLLYSG 251
Query: 455 SADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREF 634
SAD T++ W TG+ + F H V+ + LF+ S D ARA+ G + R F
Sbjct: 252 SADRTVKCWLADTGERVLTFPAHRHSVSALKYHAGTLFTGSGDACARAFDAQSGVLQRVF 311
Query: 635 RGHR---NCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQV 775
RGH NC+ V G +L T S DG ++W V
Sbjct: 312 RGHTFVINCL-------------------QVHGQVLYTASHDGALRLWDV 342
Score = 54.3 bits (129), Expect = 2e-07
Identities = 37/145 (25%), Positives = 54/145 (37%), Gaps = 40/145 (27%)
Frame = +2
Query: 776 ASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDA------------------------- 880
+SG + H G + L L G TGS D
Sbjct: 3 SSGSALRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTVDGQCCALLQGHESYVTF 62
Query: 881 ---------------TIRAWDILSGEPLRVFREHQGSIICLELVNRHVYSGSADRTVKCW 1015
TIR WD+ +G+ L+V+R H + + + N ++S S DRT + W
Sbjct: 63 CHLEDEAAFTCSADCTIRRWDVRTGQCLQVYRGHTSIVNRILVANDQLFSSSYDRTARVW 122
Query: 1016 LADTGERVRTFAAHRHSVSALKYHA 1090
D G+ + F HR+ V L Y A
Sbjct: 123 TVDKGQVSQEFRGHRNCVLTLAYSA 147
>ref|NP_536353.2| F-box/WD repeat-containing protein 7 isoform 2 [Mus musculus].
Length = 629
Score = 145 bits (366), Expect = 8e-35
Identities = 83/261 (31%), Positives = 128/261 (49%), Gaps = 3/261 (1%)
Frame = +2
Query: 314 GQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVLT 493
G R+++GS+D T ++WS G+C L GH V Q+ D + S D T++ W+ T
Sbjct: 313 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAET 372
Query: 494 GQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYS 673
G+C+ GHTS V + + ++ S S D T R W ++ GQ GH V + Y
Sbjct: 373 GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD 432
Query: 674 APWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGH 853
G +V+G+ D KVW + C TL+GHT V L D G
Sbjct: 433 ----------------GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GI 474
Query: 854 TAFTGSTDATIRAWDILSGEPLRVFREHQGSIICLELVNRHVYSGSADRTVKCWLADTGE 1033
+GS D +IR WD+ +G + HQ +EL + + SG+AD TVK W TG+
Sbjct: 475 HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQ 534
Query: 1034 RVRTF---AAHRHSVSALKYH 1087
++T + H+ +V+ L+++
Sbjct: 535 CLQTLQGPSKHQSAVTCLQFN 555
Score = 142 bits (358), Expect = 7e-34
Identities = 83/265 (31%), Positives = 129/265 (48%), Gaps = 3/265 (1%)
Frame = +2
Query: 257 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED 436
LR H GG+ W S D +++GS D T ++W+ G+C L GH S V L +
Sbjct: 336 LRTLVGHTGGV-WSSQMRDNI-IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE 393
Query: 437 EAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKG 616
+ + S D T+R WD+ TGQCL V GH + V + ++ S +YD + W +
Sbjct: 394 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE 453
Query: 617 QVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQ 796
+GH N V +L + G +V+GS D + +VW V +G C
Sbjct: 454 TCLHTLQGHTNRVYSLQFD----------------GIHVVSGSLDTSIRVWDVETGNCIH 497
Query: 797 TLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFR---EHQGSIICLELV 967
TL GH L ++ + +G+ D+T++ WDI +G+ L+ + +HQ ++ CL+
Sbjct: 498 TLTGHQS--LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPSKHQSAVTCLQFN 555
Query: 968 NRHVYSGSADRTVKCWLADTGERVR 1042
V + S D TVK W TGE +R
Sbjct: 556 KNFVITSSDDGTVKLWDLKTGEFIR 580
Score = 100 bits (249), Expect = 3e-21
Identities = 61/194 (31%), Positives = 92/194 (47%), Gaps = 1/194 (0%)
Frame = +2
Query: 506 QVFRGHTS-IVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPW 682
+V +GH ++ + N++ S S D T + WS G+ R GH V W
Sbjct: 296 KVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV--------W 347
Query: 683 DLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAF 862
+ ++++GSTD T KVW +G C TL GHT V C+ L
Sbjct: 348 --------SSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVV 397
Query: 863 TGSTDATIRAWDILSGEPLRVFREHQGSIICLELVNRHVYSGSADRTVKCWLADTGERVR 1042
+GS DAT+R WDI +G+ L V H ++ C++ R V SG+ D VK W +T +
Sbjct: 398 SGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLH 457
Query: 1043 TFAAHRHSVSALKY 1084
T H + V +L++
Sbjct: 458 TLQGHTNRVYSLQF 471
>ref|NP_001171245.1| F-box/WD repeat-containing protein 7 isoform 1 [Mus musculus].
Length = 710
Score = 145 bits (366), Expect = 8e-35
Identities = 83/261 (31%), Positives = 128/261 (49%), Gaps = 3/261 (1%)
Frame = +2
Query: 314 GQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVLT 493
G R+++GS+D T ++WS G+C L GH V Q+ D + S D T++ W+ T
Sbjct: 394 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAET 453
Query: 494 GQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYS 673
G+C+ GHTS V + + ++ S S D T R W ++ GQ GH V + Y
Sbjct: 454 GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD 513
Query: 674 APWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGH 853
G +V+G+ D KVW + C TL+GHT V L D G
Sbjct: 514 ----------------GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GI 555
Query: 854 TAFTGSTDATIRAWDILSGEPLRVFREHQGSIICLELVNRHVYSGSADRTVKCWLADTGE 1033
+GS D +IR WD+ +G + HQ +EL + + SG+AD TVK W TG+
Sbjct: 556 HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQ 615
Query: 1034 RVRTF---AAHRHSVSALKYH 1087
++T + H+ +V+ L+++
Sbjct: 616 CLQTLQGPSKHQSAVTCLQFN 636
Score = 142 bits (358), Expect = 7e-34
Identities = 83/265 (31%), Positives = 129/265 (48%), Gaps = 3/265 (1%)
Frame = +2
Query: 257 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED 436
LR H GG+ W S D +++GS D T ++W+ G+C L GH S V L +
Sbjct: 417 LRTLVGHTGGV-WSSQMRDNI-IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE 474
Query: 437 EAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKG 616
+ + S D T+R WD+ TGQCL V GH + V + ++ S +YD + W +
Sbjct: 475 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE 534
Query: 617 QVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQ 796
+GH N V +L + G +V+GS D + +VW V +G C
Sbjct: 535 TCLHTLQGHTNRVYSLQFD----------------GIHVVSGSLDTSIRVWDVETGNCIH 578
Query: 797 TLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFR---EHQGSIICLELV 967
TL GH L ++ + +G+ D+T++ WDI +G+ L+ + +HQ ++ CL+
Sbjct: 579 TLTGHQS--LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPSKHQSAVTCLQFN 636
Query: 968 NRHVYSGSADRTVKCWLADTGERVR 1042
V + S D TVK W TGE +R
Sbjct: 637 KNFVITSSDDGTVKLWDLKTGEFIR 661
Score = 100 bits (249), Expect = 3e-21
Identities = 61/194 (31%), Positives = 92/194 (47%), Gaps = 1/194 (0%)
Frame = +2
Query: 506 QVFRGHTS-IVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPW 682
+V +GH ++ + N++ S S D T + WS G+ R GH V W
Sbjct: 377 KVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV--------W 428
Query: 683 DLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAF 862
+ ++++GSTD T KVW +G C TL GHT V C+ L
Sbjct: 429 --------SSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVV 478
Query: 863 TGSTDATIRAWDILSGEPLRVFREHQGSIICLELVNRHVYSGSADRTVKCWLADTGERVR 1042
+GS DAT+R WDI +G+ L V H ++ C++ R V SG+ D VK W +T +
Sbjct: 479 SGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLH 538
Query: 1043 TFAAHRHSVSALKY 1084
T H + V +L++
Sbjct: 539 TLQGHTNRVYSLQF 552
>ref|NP_001171244.1| F-box/WD repeat-containing protein 7 isoform 1 [Mus musculus].
Length = 710
Score = 145 bits (366), Expect = 8e-35
Identities = 83/261 (31%), Positives = 128/261 (49%), Gaps = 3/261 (1%)
Frame = +2
Query: 314 GQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVLT 493
G R+++GS+D T ++WS G+C L GH V Q+ D + S D T++ W+ T
Sbjct: 394 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAET 453
Query: 494 GQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYS 673
G+C+ GHTS V + + ++ S S D T R W ++ GQ GH V + Y
Sbjct: 454 GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD 513
Query: 674 APWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGH 853
G +V+G+ D KVW + C TL+GHT V L D G
Sbjct: 514 ----------------GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GI 555
Query: 854 TAFTGSTDATIRAWDILSGEPLRVFREHQGSIICLELVNRHVYSGSADRTVKCWLADTGE 1033
+GS D +IR WD+ +G + HQ +EL + + SG+AD TVK W TG+
Sbjct: 556 HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQ 615
Query: 1034 RVRTF---AAHRHSVSALKYH 1087
++T + H+ +V+ L+++
Sbjct: 616 CLQTLQGPSKHQSAVTCLQFN 636
Score = 142 bits (358), Expect = 7e-34
Identities = 83/265 (31%), Positives = 129/265 (48%), Gaps = 3/265 (1%)
Frame = +2
Query: 257 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED 436
LR H GG+ W S D +++GS D T ++W+ G+C L GH S V L +
Sbjct: 417 LRTLVGHTGGV-WSSQMRDNI-IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE 474
Query: 437 EAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKG 616
+ + S D T+R WD+ TGQCL V GH + V + ++ S +YD + W +
Sbjct: 475 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE 534
Query: 617 QVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQ 796
+GH N V +L + G +V+GS D + +VW V +G C
Sbjct: 535 TCLHTLQGHTNRVYSLQFD----------------GIHVVSGSLDTSIRVWDVETGNCIH 578
Query: 797 TLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFR---EHQGSIICLELV 967
TL GH L ++ + +G+ D+T++ WDI +G+ L+ + +HQ ++ CL+
Sbjct: 579 TLTGHQS--LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPSKHQSAVTCLQFN 636
Query: 968 NRHVYSGSADRTVKCWLADTGERVR 1042
V + S D TVK W TGE +R
Sbjct: 637 KNFVITSSDDGTVKLWDLKTGEFIR 661
Score = 100 bits (249), Expect = 3e-21
Identities = 61/194 (31%), Positives = 92/194 (47%), Gaps = 1/194 (0%)
Frame = +2
Query: 506 QVFRGHTS-IVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPW 682
+V +GH ++ + N++ S S D T + WS G+ R GH V W
Sbjct: 377 KVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV--------W 428
Query: 683 DLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAF 862
+ ++++GSTD T KVW +G C TL GHT V C+ L
Sbjct: 429 --------SSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVV 478
Query: 863 TGSTDATIRAWDILSGEPLRVFREHQGSIICLELVNRHVYSGSADRTVKCWLADTGERVR 1042
+GS DAT+R WDI +G+ L V H ++ C++ R V SG+ D VK W +T +
Sbjct: 479 SGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLH 538
Query: 1043 TFAAHRHSVSALKY 1084
T H + V +L++
Sbjct: 539 TLQGHTNRVYSLQF 552
>ref|NP_038653.1| platelet-activating factor acetylhydrolase IB subunit alpha [Mus
musculus].
Length = 410
Score = 117 bits (293), Expect = 2e-26
Identities = 76/266 (28%), Positives = 123/266 (46%), Gaps = 14/266 (5%)
Frame = +2
Query: 260 RVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQL--E 433
R H + +S G+ L + S D T +LW +C + GH+ V+ +
Sbjct: 144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPN 203
Query: 434 DEAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQ----LFSSSYDRTARAW 601
+ + S D TI+ W+V TG C++ F GH V +V NQ + S S D+T R W
Sbjct: 204 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR--MVRPNQDGTLIASCSNDQTVRVW 261
Query: 602 SVDKGQVSREFRGHRNCVLTLA------YSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAK 763
V + E R H + V ++ YS+ + G+ + G L++GS D T K
Sbjct: 262 VVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 321
Query: 764 VWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQG 943
+W V++G C TL GH V ++ + G + + D T+R WD + ++ H+
Sbjct: 322 MWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH 381
Query: 944 SIICLEL--VNRHVYSGSADRTVKCW 1015
+ L+ +V +GS D+TVK W
Sbjct: 382 FVTSLDFHKTAPYVVTGSVDQTVKVW 407
Score = 109 bits (272), Expect = 6e-24
Identities = 77/297 (25%), Positives = 121/297 (40%), Gaps = 26/297 (8%)
Frame = +2
Query: 275 HRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAF-- 448
HR + + P +++ SED T ++W G L+GH V +
Sbjct: 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLA 166
Query: 449 TCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNN--QLFSSSYDRTARAWSVDKGQV 622
+CSAD TI+ WD +C++ GH V+ + + N + S+S D+T + W V G
Sbjct: 167 SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYC 226
Query: 623 SREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTL 802
+ F GHR V V G L+ + S D T +VW VA+ C L
Sbjct: 227 VKTFTGHREWVRM--------------VRPNQDGTLIASCSNDQTVRVWVVATKECKAEL 272
Query: 803 RGHTGAVLCLVL--------------------DTPGHTAFTGSTDATIRAWDILSGEPLR 922
R H V C+ PG +GS D TI+ WD+ +G L
Sbjct: 273 REHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM 332
Query: 923 VFREHQGSI--ICLELVNRHVYSGSADRTVKCWLADTGERVRTFAAHRHSVSALKYH 1087
H + + + + S + D+T++ W ++T AH H V++L +H
Sbjct: 333 TLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH 389
Score = 90.5 bits (223), Expect = 3e-18
Identities = 72/260 (27%), Positives = 105/260 (40%), Gaps = 26/260 (10%)
Frame = +2
Query: 392 LQGHESYVTFCQLEDEAAFTCSA--DCTIRKWDVLTGQCLQVFRGHTSIVNRILV--TNN 559
L GH S VT + SA D TI+ WD TG + +GHT V I +
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 163
Query: 560 QLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVT 739
L S S D T + W + R GH + V ++A +P G +V+
Sbjct: 164 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAI-----MPN---------GDHIVS 209
Query: 740 GSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPL 919
S D T K+W+V +G C +T GH V + + G + S D T+R W + + E
Sbjct: 210 ASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK 269
Query: 920 RVFREHQGSIICLELVNRHVY----------------------SGSADRTVKCWLADTGE 1033
REH+ + C+ Y SGS D+T+K W TG
Sbjct: 270 AELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 329
Query: 1034 RVRTFAAHRHSVSALKYHAG 1093
+ T H + V + +H+G
Sbjct: 330 CLMTLVGHDNWVRGVLFHSG 349
>ref|NP_081389.1| WD repeat-containing protein 5B [Mus musculus].
Length = 328
Score = 115 bits (289), Expect = 7e-26
Identities = 84/290 (28%), Positives = 129/290 (44%), Gaps = 12/290 (4%)
Frame = +2
Query: 254 ALRVC-ADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQL 430
ALR+ A H I+ + SP+G+ L + + D +W DG C L GH ++
Sbjct: 30 ALRLTLAGHSAAISSVKFSPNGEWLASSAADALIIIWGAYDGNCKKTLYGHSLEISDVAW 89
Query: 431 EDEAAFTCSA--DCTIRKWDVLTGQCLQVFRGHTSIV--NRILVTNNQLFSSSYDRTARA 598
+++ SA D T++ WD+ +G+CL+ +GH+ V +N + S S+D + +
Sbjct: 90 SSDSSRLVSASDDKTLKVWDMRSGKCLKTLKGHSDFVFCCDFNPPSNLIVSGSFDESVKI 149
Query: 599 WSVDKGQVSREFRGHRNCVLTL-AYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQV 775
W V G+ C+ TL A+S P C G L+V+GS DG ++W
Sbjct: 150 WEVKTGK----------CLKTLSAHSDPISAVNFNC-----NGSLIVSGSYDGLCRIWDA 194
Query: 776 ASGCCHQTLRGHTGAVLCLVLDTP-GHTAFTGSTDATIRAWDILSGEPLRVFREHQGSII 952
ASG C +TL + V +P G T + D T++ WD G L+ + H+
Sbjct: 195 ASGQCLRTLADEGNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKY 254
Query: 953 CL-----ELVNRHVYSGSADRTVKCWLADTGERVRTFAAHRHSVSALKYH 1087
CL + V SGS D V W T E V+ H V + H
Sbjct: 255 CLFASFSVTGRKWVVSGSEDNMVYIWNLQTKEIVQRLQGHTDVVISAACH 304
Score = 99.8 bits (247), Expect = 5e-21
Identities = 68/261 (26%), Positives = 117/261 (44%), Gaps = 11/261 (4%)
Frame = +2
Query: 275 HRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTC 454
H I+ ++ S D RL++ S+D T ++W G+C L+GH +V C +
Sbjct: 80 HSLEISDVAWSSDSSRLVSASDDKTLKVWDMRSGKCLKTLKGHSDFVFCCDFNPPSNLIV 139
Query: 455 SA--DCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNN--QLFSSSYDRTARAWSVDKGQV 622
S D +++ W+V TG+CL+ H+ ++ + N + S SYD R W GQ
Sbjct: 140 SGSFDESVKIWEVKTGKCLKTLSAHSDPISAVNFNCNGSLIVSGSYDGLCRIWDAASGQ- 198
Query: 623 SREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTL 802
C+ TLA P V+ + G ++T + D T K+W + G C +T
Sbjct: 199 ---------CLRTLADEGN---PPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTY 246
Query: 803 RGHTGAVLCLVLD---TPGHTAFTGSTDATIRAWDILSGEPLRVFREHQGSIICLEL-VN 970
GH CL T +GS D + W++ + E ++ + H +I
Sbjct: 247 TGHKNEKYCLFASFSVTGRKWVVSGSEDNMVYIWNLQTKEIVQRLQGHTDVVISAACHPT 306
Query: 971 RHVYSGSA---DRTVKCWLAD 1024
+++ + +A D+T+K W +D
Sbjct: 307 KNIIASAALENDKTIKVWSSD 327
Score = 64.3 bits (155), Expect = 2e-10
Identities = 45/180 (25%), Positives = 83/180 (46%), Gaps = 9/180 (5%)
Frame = +2
Query: 257 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALL--QGHE--SYVTFC 424
L+ + H I+ ++ + +G +++GS DG R+W A GQC L +G+ S+V F
Sbjct: 158 LKTLSAHSDPISAVNFNCNGSLIVSGSYDGLCRIWDAASGQCLRTLADEGNPPVSFVKFS 217
Query: 425 QLEDEAAFTCSADCTIRKWDVLTGQCLQVFRGHTS----IVNRILVTNNQ-LFSSSYDRT 589
+ T + D T++ WD G+CL+ + GH + + VT + + S S D
Sbjct: 218 P-NGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKYCLFASFSVTGRKWVVSGSEDNM 276
Query: 590 ARAWSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVW 769
W++ ++ + +GH + V++ A ++ + +E D T KVW
Sbjct: 277 VYIWNLQTKEIVQRLQGHTDVVISAACHPTKNIIASAALE------------NDKTIKVW 324
>ref|NP_598776.1| F-box/WD repeat-containing protein 11 [Mus musculus].
Length = 563
Score = 114 bits (284), Expect = 3e-25
Identities = 68/241 (28%), Positives = 108/241 (44%), Gaps = 3/241 (1%)
Frame = +2
Query: 302 LSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKW 481
L D ++++G D + ++W + +C +L GH V Q ++ T S+D T+R W
Sbjct: 267 LQYDDDKIISGLRDNSIKIWDKSSLECLKVLTGHTGSVLCLQYDERVIVTGSSDSTVRVW 326
Query: 482 DVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKG---QVSREFRGHRNC 652
DV TG+ L H V + +N + + S DR+ W + + R GHR
Sbjct: 327 DVNTGEVLNTLIHHNEAVLHLRFSNGLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAA 386
Query: 653 VLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCL 832
V + + + +V+ S D T KVW ++ +TL GH + C
Sbjct: 387 VNVVDFDDKY----------------IVSASGDRTIKVWSTSTCEFVRTLNGHKRGIAC- 429
Query: 833 VLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQGSIICLELVNRHVYSGSADRTVKC 1012
L +GS+D TIR WDI G LRV H+ + C+ N+ + SG+ D +K
Sbjct: 430 -LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKV 488
Query: 1013 W 1015
W
Sbjct: 489 W 489
Score = 111 bits (277), Expect = 2e-24
Identities = 74/265 (27%), Positives = 115/265 (43%), Gaps = 12/265 (4%)
Frame = +2
Query: 257 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED 436
L+V H G + L L D + ++TGS D T R+W G+ L H V + +
Sbjct: 294 LKVLTGHTGSV--LCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHLRFSN 351
Query: 437 EAAFTCSADCTIRKWDVLTGQCL---QVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSV 607
TCS D +I WD+ + + +V GH + VN + + + S+S DRT + WS
Sbjct: 352 GLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWST 411
Query: 608 DKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGC 787
+ R GH+ + L Y L+V+GS+D T ++W + G
Sbjct: 412 STCEFVRTLNGHKRGIACLQY----------------RDRLVVSGSSDNTIRLWDIECGA 455
Query: 788 CHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSG-EP--------LRVFREHQ 940
C + L GH V C+ D +G+ D I+ WD+ + +P LR EH
Sbjct: 456 CLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHS 513
Query: 941 GSIICLELVNRHVYSGSADRTVKCW 1015
G + L+ + S S D T+ W
Sbjct: 514 GRVFRLQFDEFQIISSSHDDTILIW 538
Score = 99.8 bits (247), Expect = 5e-21
Identities = 66/223 (29%), Positives = 100/223 (44%), Gaps = 3/223 (1%)
Frame = +2
Query: 425 QLEDEAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWS 604
Q +D+ + D +I+ WD + +CL+V GHT V + + + S D T R W
Sbjct: 268 QYDDDKIISGLRDNSIKIWDKSSLECLKVLTGHTGSVLCLQYDERVIVTGSSDSTVRVWD 327
Query: 605 VDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASG 784
V+ G+V H VL L +S GL+VT S D + VW +AS
Sbjct: 328 VNTGEVLNTLIHHNEAVLHLRFS----------------NGLMVTCSKDRSIAVWDMASA 371
Query: 785 C---CHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQGSIIC 955
+ L GH AV V+D + S D TI+ W + E +R H+ I C
Sbjct: 372 TDITLRRVLVGHRAAVN--VVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIAC 429
Query: 956 LELVNRHVYSGSADRTVKCWLADTGERVRTFAAHRHSVSALKY 1084
L+ +R V SGS+D T++ W + G +R H V +++
Sbjct: 430 LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF 472
Score = 60.8 bits (146), Expect = 3e-09
Identities = 33/91 (36%), Positives = 49/91 (53%)
Frame = +2
Query: 821 VLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQGSIICLELVNRHVYSGSADR 1000
V CL D +G D +I+ WD S E L+V H GS++CL+ R + +GS+D
Sbjct: 264 VYCLQYDDD--KIISGLRDNSIKIWDKSSLECLKVLTGHTGSVLCLQYDERVIVTGSSDS 321
Query: 1001 TVKCWLADTGERVRTFAAHRHSVSALKYHAG 1093
TV+ W +TGE + T H +V L++ G
Sbjct: 322 TVRVWDVNTGEVLNTLIHHNEAVLHLRFSNG 352
>ref|NP_001032847.2| F-box/WD repeat-containing protein 1A isoform a [Mus musculus].
Length = 605
Score = 114 bits (284), Expect = 3e-25
Identities = 69/241 (28%), Positives = 107/241 (44%), Gaps = 3/241 (1%)
Frame = +2
Query: 302 LSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKW 481
L D Q++++G D T ++W + +C +L GH V Q ++ T S+D T+R W
Sbjct: 309 LQYDDQKIVSGLRDNTIKIWDKSTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVW 368
Query: 482 DVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKG---QVSREFRGHRNC 652
DV G+ L H V + N + + S DR+ W + + R GHR
Sbjct: 369 DVNAGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA 428
Query: 653 VLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCL 832
V + + + +V+ S D T KVW ++ +TL GH + C
Sbjct: 429 VNVVDFDDKY----------------IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC- 471
Query: 833 VLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQGSIICLELVNRHVYSGSADRTVKC 1012
L +GS+D TIR WDI G LRV H+ + C+ N+ + SG+ D +K
Sbjct: 472 -LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKV 530
Query: 1013 W 1015
W
Sbjct: 531 W 531
Score = 108 bits (270), Expect = 1e-23
Identities = 72/264 (27%), Positives = 115/264 (43%), Gaps = 12/264 (4%)
Frame = +2
Query: 260 RVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDE 439
R+ H G + L L D + ++TGS D T R+W G+ L H V + +
Sbjct: 337 RILTGHTGSV--LCLQYDERVIITGSSDSTVRVWDVNAGEMLNTLIHHCEAVLHLRFNNG 394
Query: 440 AAFTCSADCTIRKWDVLTGQCL---QVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVD 610
TCS D +I WD+ + + +V GH + VN + + + S+S DRT + W+
Sbjct: 395 MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTS 454
Query: 611 KGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCC 790
+ R GH+ + L Y L+V+GS+D T ++W + G C
Sbjct: 455 TCEFVRTLNGHKRGIACLQY----------------RDRLVVSGSSDNTIRLWDIECGAC 498
Query: 791 HQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSG-EP--------LRVFREHQG 943
+ L GH V C+ D +G+ D I+ WD+++ +P LR EH G
Sbjct: 499 LRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLMAALDPRAPAGTLCLRTLVEHSG 556
Query: 944 SIICLELVNRHVYSGSADRTVKCW 1015
+ L+ + S S D T+ W
Sbjct: 557 RVFRLQFDEFQIVSSSHDDTILIW 580
Score = 95.5 bits (236), Expect = 1e-19
Identities = 63/223 (28%), Positives = 100/223 (44%), Gaps = 3/223 (1%)
Frame = +2
Query: 425 QLEDEAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWS 604
Q +D+ + D TI+ WD T +C ++ GHT V + + + S D T R W
Sbjct: 310 QYDDQKIVSGLRDNTIKIWDKSTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWD 369
Query: 605 VDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASG 784
V+ G++ H VL L ++ G++VT S D + VW +AS
Sbjct: 370 VNAGEMLNTLIHHCEAVLHLRFN----------------NGMMVTCSKDRSIAVWDMASP 413
Query: 785 C---CHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQGSIIC 955
+ L GH AV V+D + S D TI+ W+ + E +R H+ I C
Sbjct: 414 TDITLRRVLVGHRAAVN--VVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC 471
Query: 956 LELVNRHVYSGSADRTVKCWLADTGERVRTFAAHRHSVSALKY 1084
L+ +R V SGS+D T++ W + G +R H V +++
Sbjct: 472 LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF 514
Score = 59.3 bits (142), Expect = 8e-09
Identities = 34/103 (33%), Positives = 53/103 (51%)
Frame = +2
Query: 785 CCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQGSIICLEL 964
C +T +G V CL D +G D TI+ WD + E R+ H GS++CL+
Sbjct: 298 CRSETSKG----VYCLQYDD--QKIVSGLRDNTIKIWDKSTLECKRILTGHTGSVLCLQY 351
Query: 965 VNRHVYSGSADRTVKCWLADTGERVRTFAAHRHSVSALKYHAG 1093
R + +GS+D TV+ W + GE + T H +V L+++ G
Sbjct: 352 DERVIITGSSDSTVRVWDVNAGEMLNTLIHHCEAVLHLRFNNG 394
Score = 55.8 bits (133), Expect = 8e-08
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 9/124 (7%)
Frame = +2
Query: 257 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED 436
+R H+ GI L + +++GS D T RLW G C +L+GHE V + ++
Sbjct: 459 VRTLNGHKRGIACLQYRD--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN 516
Query: 437 EAAFTCSADCTIRKWDVLTG---------QCLQVFRGHTSIVNRILVTNNQLFSSSYDRT 589
+ + + D I+ WD++ CL+ H+ V R+ Q+ SSS+D T
Sbjct: 517 KRIVSGAYDGKIKVWDLMAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDT 576
Query: 590 ARAW 601
W
Sbjct: 577 ILIW 580
>ref|NP_033901.1| F-box/WD repeat-containing protein 1A isoform b [Mus musculus].
Length = 569
Score = 114 bits (284), Expect = 3e-25
Identities = 69/241 (28%), Positives = 107/241 (44%), Gaps = 3/241 (1%)
Frame = +2
Query: 302 LSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKW 481
L D Q++++G D T ++W + +C +L GH V Q ++ T S+D T+R W
Sbjct: 273 LQYDDQKIVSGLRDNTIKIWDKSTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVW 332
Query: 482 DVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKG---QVSREFRGHRNC 652
DV G+ L H V + N + + S DR+ W + + R GHR
Sbjct: 333 DVNAGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA 392
Query: 653 VLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCL 832
V + + + +V+ S D T KVW ++ +TL GH + C
Sbjct: 393 VNVVDFDDKY----------------IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC- 435
Query: 833 VLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQGSIICLELVNRHVYSGSADRTVKC 1012
L +GS+D TIR WDI G LRV H+ + C+ N+ + SG+ D +K
Sbjct: 436 -LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKV 494
Query: 1013 W 1015
W
Sbjct: 495 W 495
Score = 108 bits (270), Expect = 1e-23
Identities = 72/264 (27%), Positives = 115/264 (43%), Gaps = 12/264 (4%)
Frame = +2
Query: 260 RVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDE 439
R+ H G + L L D + ++TGS D T R+W G+ L H V + +
Sbjct: 301 RILTGHTGSV--LCLQYDERVIITGSSDSTVRVWDVNAGEMLNTLIHHCEAVLHLRFNNG 358
Query: 440 AAFTCSADCTIRKWDVLTGQCL---QVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVD 610
TCS D +I WD+ + + +V GH + VN + + + S+S DRT + W+
Sbjct: 359 MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTS 418
Query: 611 KGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCC 790
+ R GH+ + L Y L+V+GS+D T ++W + G C
Sbjct: 419 TCEFVRTLNGHKRGIACLQY----------------RDRLVVSGSSDNTIRLWDIECGAC 462
Query: 791 HQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSG-EP--------LRVFREHQG 943
+ L GH V C+ D +G+ D I+ WD+++ +P LR EH G
Sbjct: 463 LRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLMAALDPRAPAGTLCLRTLVEHSG 520
Query: 944 SIICLELVNRHVYSGSADRTVKCW 1015
+ L+ + S S D T+ W
Sbjct: 521 RVFRLQFDEFQIVSSSHDDTILIW 544
Score = 95.5 bits (236), Expect = 1e-19
Identities = 63/223 (28%), Positives = 100/223 (44%), Gaps = 3/223 (1%)
Frame = +2
Query: 425 QLEDEAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWS 604
Q +D+ + D TI+ WD T +C ++ GHT V + + + S D T R W
Sbjct: 274 QYDDQKIVSGLRDNTIKIWDKSTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWD 333
Query: 605 VDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASG 784
V+ G++ H VL L ++ G++VT S D + VW +AS
Sbjct: 334 VNAGEMLNTLIHHCEAVLHLRFN----------------NGMMVTCSKDRSIAVWDMASP 377
Query: 785 C---CHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQGSIIC 955
+ L GH AV V+D + S D TI+ W+ + E +R H+ I C
Sbjct: 378 TDITLRRVLVGHRAAVN--VVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC 435
Query: 956 LELVNRHVYSGSADRTVKCWLADTGERVRTFAAHRHSVSALKY 1084
L+ +R V SGS+D T++ W + G +R H V +++
Sbjct: 436 LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF 478
Score = 59.3 bits (142), Expect = 8e-09
Identities = 34/103 (33%), Positives = 53/103 (51%)
Frame = +2
Query: 785 CCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQGSIICLEL 964
C +T +G V CL D +G D TI+ WD + E R+ H GS++CL+
Sbjct: 262 CRSETSKG----VYCLQYDD--QKIVSGLRDNTIKIWDKSTLECKRILTGHTGSVLCLQY 315
Query: 965 VNRHVYSGSADRTVKCWLADTGERVRTFAAHRHSVSALKYHAG 1093
R + +GS+D TV+ W + GE + T H +V L+++ G
Sbjct: 316 DERVIITGSSDSTVRVWDVNAGEMLNTLIHHCEAVLHLRFNNG 358
Score = 55.8 bits (133), Expect = 8e-08
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 9/124 (7%)
Frame = +2
Query: 257 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED 436
+R H+ GI L + +++GS D T RLW G C +L+GHE V + ++
Sbjct: 423 VRTLNGHKRGIACLQYRD--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN 480
Query: 437 EAAFTCSADCTIRKWDVLTG---------QCLQVFRGHTSIVNRILVTNNQLFSSSYDRT 589
+ + + D I+ WD++ CL+ H+ V R+ Q+ SSS+D T
Sbjct: 481 KRIVSGAYDGKIKVWDLMAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDT 540
Query: 590 ARAW 601
W
Sbjct: 541 ILIW 544
>ref|NP_796316.2| transcription initiation factor TFIID subunit 5 [Mus musculus].
Length = 801
Score = 111 bits (278), Expect = 1e-24
Identities = 74/220 (33%), Positives = 96/220 (43%), Gaps = 4/220 (1%)
Frame = +2
Query: 251 SALRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQL 430
S L++ H G + S SPD LL+ SEDGT RLWS C +GH V Q
Sbjct: 535 SELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQF 594
Query: 431 EDEAAFTCSA--DCTIRKWDVLTGQCLQVFRGHTSIVN--RILVTNNQLFSSSYDRTARA 598
+ S D R W Q L++F GH + VN R +N + + S DRT R
Sbjct: 595 SPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRL 654
Query: 599 WSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVA 778
W V G R F GH+ + +L +S G L TG+TDG +W +
Sbjct: 655 WDVLNGNCVRIFTGHKGPIHSLTFSPN--------------GRFLATGATDGRVLLWDIG 700
Query: 779 SGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWD 898
G L+GHT V L G +GS D T+R WD
Sbjct: 701 HGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWD 740
Score = 86.7 bits (213), Expect = 4e-17
Identities = 63/233 (27%), Positives = 90/233 (38%), Gaps = 6/233 (2%)
Frame = +2
Query: 335 SEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSA--DCTIRKWDVLTGQCLQ 508
S+D R+ +L GH V + + S+ D T+R W + T CL
Sbjct: 521 SDDVLERIMDEKTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLV 580
Query: 509 VFRGHTSIV--NRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPW 682
++GH V + S +DR AR W+ D Q R F GH
Sbjct: 581 GYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGH------------- 627
Query: 683 DLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAF 862
L C + TGS D T ++W V +G C + GH G + L G
Sbjct: 628 -LADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLA 686
Query: 863 TGSTDATIRAWDILSGEPLRVFREHQGSIICLELV--NRHVYSGSADRTVKCW 1015
TG+TD + WDI G + + H ++ L + SGS D TV+ W
Sbjct: 687 TGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLW 739
Score = 65.1 bits (157), Expect = 1e-10
Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Frame = +2
Query: 731 LVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSG 910
L++ S DGT ++W + + C +GH V G+ +G D R W
Sbjct: 559 LLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHY 618
Query: 911 EPLRVFREHQGSIICLELV--NRHVYSGSADRTVKCWLADTGERVRTFAAHRHSVSALKY 1084
+PLR+F H + C + +V +GSADRTV+ W G VR F H+ + +L +
Sbjct: 619 QPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTF 678
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,418,910
Number of extensions: 1111951
Number of successful extensions: 8062
Number of sequences better than 1.0e-05: 115
Number of HSP's gapped: 6697
Number of HSP's successfully gapped: 318
Length of query: 495
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 390
Effective length of database: 12,463,779
Effective search space: 4860873810
Effective search space used: 4860873810
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVR01_0011_G02
(1487 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_938026.2| WD repeat-containing protein 86 [Homo sapiens]. 558 e-159
Alignment gi|NP_001013433.1| F-box/WD repeat-containing protein 7 isoform... 145 1e-34
Alignment gi|NP_361014.1| F-box/WD repeat-containing protein 7 isoform 1 ... 145 1e-34
Alignment gi|NP_060785.2| F-box/WD repeat-containing protein 7 isoform 2 ... 145 1e-34
Alignment gi|NP_001038941.1| WD repeat-containing protein 38 [Homo sapien... 135 8e-32
Alignment gi|NP_849143.1| WD repeat-containing protein 69 [Homo sapiens]. 122 7e-28
Alignment gi|NP_000421.1| platelet-activating factor acetylhydrolase IB s... 117 3e-26
Alignment gi|NP_003930.1| F-box/WD repeat-containing protein 1A isoform 2... 114 2e-25
Alignment gi|NP_378663.1| F-box/WD repeat-containing protein 1A isoform 1... 114 2e-25
Alignment gi|NP_036432.2| F-box/WD repeat-containing protein 11 isoform C... 114 2e-25
>ref|NP_938026.2| WD repeat-containing protein 86 [Homo sapiens].
Length = 376
Score = 558 bits (1437), Expect = e-159
Identities = 265/282 (93%), Positives = 271/282 (96%)
Frame = +2
Query: 251 SALRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQL 430
SALRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQL
Sbjct: 6 SALRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQL 65
Query: 431 EDEAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVD 610
EDEAAFTCSADCTIR+WDVLTGQCLQV+RGHTSIVNRILV NNQLFSSSYDRTAR WSVD
Sbjct: 66 EDEAAFTCSADCTIRRWDVLTGQCLQVYRGHTSIVNRILVANNQLFSSSYDRTARVWSVD 125
Query: 611 KGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCC 790
KGQ+SREFRGHRNCVLTLAYSAPWDLP PC EEA AGGLLVTGSTDGTAKVWQVASGCC
Sbjct: 126 KGQMSREFRGHRNCVLTLAYSAPWDLPSTPCAEEAAAGGLLVTGSTDGTAKVWQVASGCC 185
Query: 791 HQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQGSIICLELVN 970
HQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGE LRVFREH+GS+ICLELVN
Sbjct: 186 HQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEQLRVFREHRGSVICLELVN 245
Query: 971 RHVYSGSADRTVKCWLADTGERVRTFAAHRHSVSALKYHAGT 1096
R VYSGSADRTVKCWLADTGE VRTF AHR +VSALKYHAGT
Sbjct: 246 RLVYSGSADRTVKCWLADTGECVRTFTAHRRNVSALKYHAGT 287
Score = 83.6 bits (205), Expect = 4e-16
Identities = 51/170 (30%), Positives = 74/170 (43%), Gaps = 3/170 (1%)
Frame = +2
Query: 275 HRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTC 454
H G + L L G TGS D T R W G+ + + H V +L + ++
Sbjct: 192 HTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEQLRVFREHRGSVICLELVNRLVYSG 251
Query: 455 SADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREF 634
SAD T++ W TG+C++ F H V+ + LF+ S D ARA+ G++ R F
Sbjct: 252 SADRTVKCWLADTGECVRTFTAHRRNVSALKYHAGTLFTGSGDACARAFDAQSGELRRVF 311
Query: 635 RGHR---NCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQV 775
RGH NC+ V G +L T S DG ++W V
Sbjct: 312 RGHTFIINCI-------------------QVHGQVLYTASHDGALRLWDV 342
>ref|NP_001013433.1| F-box/WD repeat-containing protein 7 isoform 3 [Homo sapiens].
Length = 589
Score = 145 bits (365), Expect = 1e-34
Identities = 83/261 (31%), Positives = 127/261 (48%), Gaps = 3/261 (1%)
Frame = +2
Query: 314 GQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVLT 493
G R+++GS+D T ++WS G+C L GH V Q+ D + S D T++ W+ T
Sbjct: 273 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAET 332
Query: 494 GQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYS 673
G+C+ GHTS V + + ++ S S D T R W ++ GQ GH V + Y
Sbjct: 333 GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD 392
Query: 674 APWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGH 853
G +V+G+ D KVW + C TL+GHT V L D G
Sbjct: 393 ----------------GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GI 434
Query: 854 TAFTGSTDATIRAWDILSGEPLRVFREHQGSIICLELVNRHVYSGSADRTVKCWLADTGE 1033
+GS D +IR WD+ +G + HQ +EL + + SG+AD TVK W TG+
Sbjct: 435 HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQ 494
Query: 1034 RVRTFAA---HRHSVSALKYH 1087
++T H+ +V+ L+++
Sbjct: 495 CLQTLQGPNKHQSAVTCLQFN 515
Score = 142 bits (358), Expect = 8e-34
Identities = 83/265 (31%), Positives = 129/265 (48%), Gaps = 3/265 (1%)
Frame = +2
Query: 257 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED 436
LR H GG+ W S D +++GS D T ++W+ G+C L GH S V L +
Sbjct: 296 LRTLVGHTGGV-WSSQMRDNI-IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE 353
Query: 437 EAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKG 616
+ + S D T+R WD+ TGQCL V GH + V + ++ S +YD + W +
Sbjct: 354 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE 413
Query: 617 QVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQ 796
+GH N V +L + G +V+GS D + +VW V +G C
Sbjct: 414 TCLHTLQGHTNRVYSLQFD----------------GIHVVSGSLDTSIRVWDVETGNCIH 457
Query: 797 TLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFR---EHQGSIICLELV 967
TL GH L ++ + +G+ D+T++ WDI +G+ L+ + +HQ ++ CL+
Sbjct: 458 TLTGHQS--LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN 515
Query: 968 NRHVYSGSADRTVKCWLADTGERVR 1042
V + S D TVK W TGE +R
Sbjct: 516 KNFVITSSDDGTVKLWDLKTGEFIR 540
Score = 100 bits (249), Expect = 3e-21
Identities = 61/194 (31%), Positives = 92/194 (47%), Gaps = 1/194 (0%)
Frame = +2
Query: 506 QVFRGHTS-IVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPW 682
+V +GH ++ + N++ S S D T + WS G+ R GH V W
Sbjct: 256 KVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV--------W 307
Query: 683 DLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAF 862
+ ++++GSTD T KVW +G C TL GHT V C+ L
Sbjct: 308 --------SSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVV 357
Query: 863 TGSTDATIRAWDILSGEPLRVFREHQGSIICLELVNRHVYSGSADRTVKCWLADTGERVR 1042
+GS DAT+R WDI +G+ L V H ++ C++ R V SG+ D VK W +T +
Sbjct: 358 SGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLH 417
Query: 1043 TFAAHRHSVSALKY 1084
T H + V +L++
Sbjct: 418 TLQGHTNRVYSLQF 431
>ref|NP_361014.1| F-box/WD repeat-containing protein 7 isoform 1 [Homo sapiens].
Length = 707
Score = 145 bits (365), Expect = 1e-34
Identities = 83/261 (31%), Positives = 127/261 (48%), Gaps = 3/261 (1%)
Frame = +2
Query: 314 GQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVLT 493
G R+++GS+D T ++WS G+C L GH V Q+ D + S D T++ W+ T
Sbjct: 391 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAET 450
Query: 494 GQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYS 673
G+C+ GHTS V + + ++ S S D T R W ++ GQ GH V + Y
Sbjct: 451 GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD 510
Query: 674 APWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGH 853
G +V+G+ D KVW + C TL+GHT V L D G
Sbjct: 511 ----------------GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GI 552
Query: 854 TAFTGSTDATIRAWDILSGEPLRVFREHQGSIICLELVNRHVYSGSADRTVKCWLADTGE 1033
+GS D +IR WD+ +G + HQ +EL + + SG+AD TVK W TG+
Sbjct: 553 HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQ 612
Query: 1034 RVRTFAA---HRHSVSALKYH 1087
++T H+ +V+ L+++
Sbjct: 613 CLQTLQGPNKHQSAVTCLQFN 633
Score = 142 bits (358), Expect = 8e-34
Identities = 83/265 (31%), Positives = 129/265 (48%), Gaps = 3/265 (1%)
Frame = +2
Query: 257 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED 436
LR H GG+ W S D +++GS D T ++W+ G+C L GH S V L +
Sbjct: 414 LRTLVGHTGGV-WSSQMRDNI-IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE 471
Query: 437 EAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKG 616
+ + S D T+R WD+ TGQCL V GH + V + ++ S +YD + W +
Sbjct: 472 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE 531
Query: 617 QVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQ 796
+GH N V +L + G +V+GS D + +VW V +G C
Sbjct: 532 TCLHTLQGHTNRVYSLQFD----------------GIHVVSGSLDTSIRVWDVETGNCIH 575
Query: 797 TLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFR---EHQGSIICLELV 967
TL GH L ++ + +G+ D+T++ WDI +G+ L+ + +HQ ++ CL+
Sbjct: 576 TLTGHQS--LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN 633
Query: 968 NRHVYSGSADRTVKCWLADTGERVR 1042
V + S D TVK W TGE +R
Sbjct: 634 KNFVITSSDDGTVKLWDLKTGEFIR 658
Score = 100 bits (249), Expect = 3e-21
Identities = 61/194 (31%), Positives = 92/194 (47%), Gaps = 1/194 (0%)
Frame = +2
Query: 506 QVFRGHTS-IVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPW 682
+V +GH ++ + N++ S S D T + WS G+ R GH V W
Sbjct: 374 KVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV--------W 425
Query: 683 DLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAF 862
+ ++++GSTD T KVW +G C TL GHT V C+ L
Sbjct: 426 --------SSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVV 475
Query: 863 TGSTDATIRAWDILSGEPLRVFREHQGSIICLELVNRHVYSGSADRTVKCWLADTGERVR 1042
+GS DAT+R WDI +G+ L V H ++ C++ R V SG+ D VK W +T +
Sbjct: 476 SGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLH 535
Query: 1043 TFAAHRHSVSALKY 1084
T H + V +L++
Sbjct: 536 TLQGHTNRVYSLQF 549
>ref|NP_060785.2| F-box/WD repeat-containing protein 7 isoform 2 [Homo sapiens].
Length = 627
Score = 145 bits (365), Expect = 1e-34
Identities = 83/261 (31%), Positives = 127/261 (48%), Gaps = 3/261 (1%)
Frame = +2
Query: 314 GQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVLT 493
G R+++GS+D T ++WS G+C L GH V Q+ D + S D T++ W+ T
Sbjct: 311 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAET 370
Query: 494 GQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYS 673
G+C+ GHTS V + + ++ S S D T R W ++ GQ GH V + Y
Sbjct: 371 GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD 430
Query: 674 APWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGH 853
G +V+G+ D KVW + C TL+GHT V L D G
Sbjct: 431 ----------------GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GI 472
Query: 854 TAFTGSTDATIRAWDILSGEPLRVFREHQGSIICLELVNRHVYSGSADRTVKCWLADTGE 1033
+GS D +IR WD+ +G + HQ +EL + + SG+AD TVK W TG+
Sbjct: 473 HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQ 532
Query: 1034 RVRTFAA---HRHSVSALKYH 1087
++T H+ +V+ L+++
Sbjct: 533 CLQTLQGPNKHQSAVTCLQFN 553
Score = 142 bits (358), Expect = 8e-34
Identities = 83/265 (31%), Positives = 129/265 (48%), Gaps = 3/265 (1%)
Frame = +2
Query: 257 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED 436
LR H GG+ W S D +++GS D T ++W+ G+C L GH S V L +
Sbjct: 334 LRTLVGHTGGV-WSSQMRDNI-IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE 391
Query: 437 EAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKG 616
+ + S D T+R WD+ TGQCL V GH + V + ++ S +YD + W +
Sbjct: 392 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE 451
Query: 617 QVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQ 796
+GH N V +L + G +V+GS D + +VW V +G C
Sbjct: 452 TCLHTLQGHTNRVYSLQFD----------------GIHVVSGSLDTSIRVWDVETGNCIH 495
Query: 797 TLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFR---EHQGSIICLELV 967
TL GH L ++ + +G+ D+T++ WDI +G+ L+ + +HQ ++ CL+
Sbjct: 496 TLTGHQS--LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN 553
Query: 968 NRHVYSGSADRTVKCWLADTGERVR 1042
V + S D TVK W TGE +R
Sbjct: 554 KNFVITSSDDGTVKLWDLKTGEFIR 578
Score = 100 bits (249), Expect = 3e-21
Identities = 61/194 (31%), Positives = 92/194 (47%), Gaps = 1/194 (0%)
Frame = +2
Query: 506 QVFRGHTS-IVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPW 682
+V +GH ++ + N++ S S D T + WS G+ R GH V W
Sbjct: 294 KVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV--------W 345
Query: 683 DLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAF 862
+ ++++GSTD T KVW +G C TL GHT V C+ L
Sbjct: 346 --------SSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVV 395
Query: 863 TGSTDATIRAWDILSGEPLRVFREHQGSIICLELVNRHVYSGSADRTVKCWLADTGERVR 1042
+GS DAT+R WDI +G+ L V H ++ C++ R V SG+ D VK W +T +
Sbjct: 396 SGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLH 455
Query: 1043 TFAAHRHSVSALKY 1084
T H + V +L++
Sbjct: 456 TLQGHTNRVYSLQF 469
>ref|NP_001038941.1| WD repeat-containing protein 38 [Homo sapiens].
Length = 314
Score = 135 bits (341), Expect = 8e-32
Identities = 90/266 (33%), Positives = 121/266 (45%), Gaps = 9/266 (3%)
Frame = +2
Query: 275 HRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTC 454
H G +N + SPDGQ LLTGSEDG W T GQ L GH V FC+ +
Sbjct: 20 HGGEVNSSAFSPDGQMLLTGSEDGCVYGWETRSGQLLWRLGGHTGPVKFCRFSPDGHLFA 79
Query: 455 SA--DCTIRKWDVLTGQCLQVFRGHTSIVNRILVT--NNQLFSSSYDRTARAWSVDKGQV 622
SA DCT+R WDV +CL+V +GH V + + + QL S +D+ W V GQ+
Sbjct: 80 SASCDCTVRLWDVARAKCLRVLKGHQRSVETVSFSPDSRQLASGGWDKRVMLWDVQSGQM 139
Query: 623 SREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVW---QVASGCCH 793
R GHR+ + + +S P C L TGS D T +W V H
Sbjct: 140 LRLLVGHRDSIQSSDFS-----PTVNC---------LATGSWDSTVHIWDLRMVTPAVSH 185
Query: 794 QTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQGSIICLELVNR 973
Q L GH+ + CL G A +GS D TI W + L + H + +
Sbjct: 186 QALEGHSANISCLCYSASGLLA-SGSWDKTIHIWKPTTSSLLIQLKGHVTWVKSIAFSPD 244
Query: 974 HVYSGSA--DRTVKCWLADTGERVRT 1045
++ SA R VK W +TG+ + T
Sbjct: 245 ELWLASAGYSRMVKVWDCNTGKCLET 270
Score = 75.9 bits (185), Expect = 9e-14
Identities = 41/120 (34%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Frame = +2
Query: 722 GGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDI 901
G +L+TGS DG W+ SG L GHTG V GH + S D T+R WD+
Sbjct: 33 GQMLLTGSEDGCVYGWETRSGQLLWRLGGHTGPVKFCRFSPDGHLFASASCDCTVRLWDV 92
Query: 902 LSGEPLRVFREHQGSI--ICLELVNRHVYSGSADRTVKCWLADTGERVRTFAAHRHSVSA 1075
+ LRV + HQ S+ + +R + SG D+ V W +G+ +R HR S+ +
Sbjct: 93 ARAKCLRVLKGHQRSVETVSFSPDSRQLASGGWDKRVMLWDVQSGQMLRLLVGHRDSIQS 152
Score = 72.0 bits (175), Expect = 1e-12
Identities = 58/226 (25%), Positives = 89/226 (39%), Gaps = 6/226 (2%)
Frame = +2
Query: 257 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED 436
LRV H+ + +S SPD ++L +G D LW GQ LL GH +
Sbjct: 98 LRVLKGHQRSVETVSFSPDSRQLASGGWDKRVMLWDVQSGQMLRLLVGHRDSIQSSDFSP 157
Query: 437 --EAAFTCSADCTIRKWD---VLTGQCLQVFRGHTSIVNRILVTNNQLFSS-SYDRTARA 598
T S D T+ WD V Q GH++ ++ + + + L +S S+D+T
Sbjct: 158 TVNCLATGSWDSTVHIWDLRMVTPAVSHQALEGHSANISCLCYSASGLLASGSWDKTIHI 217
Query: 599 WSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVA 778
W + + +GH V ++A+S P +L L + KVW
Sbjct: 218 WKPTTSSLLIQLKGHVTWVKSIAFS-PDEL-------------WLASAGYSRMVKVWDCN 263
Query: 779 SGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEP 916
+G C +TL+G G +G+ D T R S P
Sbjct: 264 TGKCLETLKGVLDVAHTCAFTPDGKILVSGAADQTRRQISRTSKSP 309
>ref|NP_849143.1| WD repeat-containing protein 69 [Homo sapiens].
Length = 415
Score = 122 bits (307), Expect = 7e-28
Identities = 82/299 (27%), Positives = 131/299 (43%), Gaps = 35/299 (11%)
Frame = +2
Query: 296 LSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYV---TFCQLEDEAAFTCSADC 466
++L+ G +TGS D T +LW TA G+ L+GH + V F + T S D
Sbjct: 98 VALNKSGSCFITGSYDRTCKLWDTASGEELNTLEGHRNVVYAIAFNNPYGDKIATGSFDK 157
Query: 467 TIRKWDVLTGQCLQVFRGHTSIVNRILVT--NNQLFSSSYDRTARAWSVDKGQVSREFRG 640
T + W V TG+C FRGHT+ + + + + + S D TA+ W + G+ RG
Sbjct: 158 TCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQNGEEVYTLRG 217
Query: 641 HRNCVLTLAYSAP---------------WDLPGAP--------CVEEAVAG-----GLLV 736
H +++L+++ WD C E + A L++
Sbjct: 218 HSAEIISLSFNTSGDRIITGSFDHTVVVWDADTGRKVNILIGHCAEISSASFNWDCSLIL 277
Query: 737 TGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEP 916
TGS D T K+W +G C TL GH +L D G T S D T R + + +
Sbjct: 278 TGSMDKTCKLWDATNGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARIFSAATRKC 337
Query: 917 LRVFREHQGSI--ICLELVNRHVYSGSADRTVKCWLADTGERVRTFAAHRHSVSALKYH 1087
+ H+G I I H+ +GS+D+T + W A TG+ ++ H + + ++
Sbjct: 338 IAKLEGHEGEISKISFNPQGNHLLTGSSDKTARIWDAQTGQCLQVLEGHTDEIFSCAFN 396
Score = 114 bits (284), Expect = 3e-25
Identities = 74/271 (27%), Positives = 115/271 (42%), Gaps = 34/271 (12%)
Frame = +2
Query: 305 SPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAF--TCSADCTIRK 478
+P G ++ TGS D T +LWS G+C +GH + + ++ T S D T +
Sbjct: 144 NPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKL 203
Query: 479 WDVLTGQCLQVFRGHTSIVNRIL--VTNNQLFSSSYDRTARAWSVDKGQVSREFRGHR-- 646
WD+ G+ + RGH++ + + + +++ + S+D T W D G+ GH
Sbjct: 204 WDIQNGEEVYTLRGHSAEIISLSFNTSGDRIITGSFDHTVVVWDADTGRKVNILIGHCAE 263
Query: 647 --------NCVLTLAYSAP-----WDLPGAPCVEEAVA-------------GGLLVTGST 748
+C L L S WD CV G L+ T S
Sbjct: 264 ISSASFNWDCSLILTGSMDKTCKLWDATNGKCVATLTGHDDEILDSCFDYTGKLIATASA 323
Query: 749 DGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVF 928
DGTA+++ A+ C L GH G + + + G+ TGS+D T R WD +G+ L+V
Sbjct: 324 DGTARIFSAATRKCIAKLEGHEGEISKISFNPQGNHLLTGSSDKTARIWDAQTGQCLQVL 383
Query: 929 REHQGSII--CLELVNRHVYSGSADRTVKCW 1015
H I V +GS D T + W
Sbjct: 384 EGHTDEIFSCAFNYKGNIVITGSKDNTCRIW 414
Score = 94.0 bits (232), Expect = 3e-19
Identities = 59/211 (27%), Positives = 94/211 (44%), Gaps = 4/211 (1%)
Frame = +2
Query: 275 HRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAA--F 448
H I LS + G R++TGS D T +W G+ +L GH + ++ + +
Sbjct: 218 HSAEIISLSFNTSGDRIITGSFDHTVVVWDADTGRKVNILIGHCAEISSASFNWDCSLIL 277
Query: 449 TCSADCTIRKWDVLTGQCLQVFRGHTSIV--NRILVTNNQLFSSSYDRTARAWSVDKGQV 622
T S D T + WD G+C+ GH + + T + ++S D TAR +S +
Sbjct: 278 TGSMDKTCKLWDATNGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARIFSAATRKC 337
Query: 623 SREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTL 802
+ GH + ++++ G L+TGS+D TA++W +G C Q L
Sbjct: 338 IAKLEGHEGEISKISFNP--------------QGNHLLTGSSDKTARIWDAQTGQCLQVL 383
Query: 803 RGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 895
GHT + + G+ TGS D T R W
Sbjct: 384 EGHTDEIFSCAFNYKGNIVITGSKDNTCRIW 414
Score = 84.0 bits (206), Expect = 3e-16
Identities = 49/176 (27%), Positives = 81/176 (46%), Gaps = 4/176 (2%)
Frame = +2
Query: 257 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYV--TFCQL 430
+ + H I+ S + D +LTGS D T +LW +G+C A L GH+ + +
Sbjct: 254 VNILIGHCAEISSASFNWDCSLILTGSMDKTCKLWDATNGKCVATLTGHDDEILDSCFDY 313
Query: 431 EDEAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVT--NNQLFSSSYDRTARAWS 604
+ T SAD T R + T +C+ GH +++I N L + S D+TAR W
Sbjct: 314 TGKLIATASADGTARIFSAATRKCIAKLEGHEGEISKISFNPQGNHLLTGSSDKTARIWD 373
Query: 605 VDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQ 772
GQ + GH + + + A++ G +++TGS D T ++W+
Sbjct: 374 AQTGQCLQVLEGHTDEIFSCAFN--------------YKGNIVITGSKDNTCRIWR 415
Score = 56.2 bits (134), Expect = 8e-08
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Frame = +2
Query: 794 QTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQGSIICLELVNR 973
+ L+ H + + L+ G TGS D T + WD SGE L H+ + + N
Sbjct: 86 KVLKAHILPLTNVALNKSGSCFITGSYDRTCKLWDTASGEELNTLEGHRNVVYAIAFNNP 145
Query: 974 H---VYSGSADRTVKCWLADTGERVRTFAAHRHSVSALKYH 1087
+ + +GS D+T K W +TG+ TF H + L ++
Sbjct: 146 YGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFN 186
>ref|NP_000421.1| platelet-activating factor acetylhydrolase IB subunit alpha [Homo
sapiens].
Length = 410
Score = 117 bits (293), Expect = 3e-26
Identities = 76/266 (28%), Positives = 123/266 (46%), Gaps = 14/266 (5%)
Frame = +2
Query: 260 RVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQL--E 433
R H + +S G+ L + S D T +LW +C + GH+ V+ +
Sbjct: 144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPN 203
Query: 434 DEAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQ----LFSSSYDRTARAW 601
+ + S D TI+ W+V TG C++ F GH V +V NQ + S S D+T R W
Sbjct: 204 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR--MVRPNQDGTLIASCSNDQTVRVW 261
Query: 602 SVDKGQVSREFRGHRNCVLTLA------YSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAK 763
V + E R H + V ++ YS+ + G+ + G L++GS D T K
Sbjct: 262 VVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 321
Query: 764 VWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQG 943
+W V++G C TL GH V ++ + G + + D T+R WD + ++ H+
Sbjct: 322 MWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH 381
Query: 944 SIICLEL--VNRHVYSGSADRTVKCW 1015
+ L+ +V +GS D+TVK W
Sbjct: 382 FVTSLDFHKTAPYVVTGSVDQTVKVW 407
Score = 109 bits (272), Expect = 8e-24
Identities = 77/297 (25%), Positives = 121/297 (40%), Gaps = 26/297 (8%)
Frame = +2
Query: 275 HRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAF-- 448
HR + + P +++ SED T ++W G L+GH V +
Sbjct: 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLA 166
Query: 449 TCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNN--QLFSSSYDRTARAWSVDKGQV 622
+CSAD TI+ WD +C++ GH V+ + + N + S+S D+T + W V G
Sbjct: 167 SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYC 226
Query: 623 SREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTL 802
+ F GHR V V G L+ + S D T +VW VA+ C L
Sbjct: 227 VKTFTGHREWVRM--------------VRPNQDGTLIASCSNDQTVRVWVVATKECKAEL 272
Query: 803 RGHTGAVLCLVL--------------------DTPGHTAFTGSTDATIRAWDILSGEPLR 922
R H V C+ PG +GS D TI+ WD+ +G L
Sbjct: 273 REHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM 332
Query: 923 VFREHQGSI--ICLELVNRHVYSGSADRTVKCWLADTGERVRTFAAHRHSVSALKYH 1087
H + + + + S + D+T++ W ++T AH H V++L +H
Sbjct: 333 TLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH 389
Score = 90.5 bits (223), Expect = 4e-18
Identities = 72/260 (27%), Positives = 105/260 (40%), Gaps = 26/260 (10%)
Frame = +2
Query: 392 LQGHESYVTFCQLEDEAAFTCSA--DCTIRKWDVLTGQCLQVFRGHTSIVNRILV--TNN 559
L GH S VT + SA D TI+ WD TG + +GHT V I +
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 163
Query: 560 QLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVT 739
L S S D T + W + R GH + V ++A +P G +V+
Sbjct: 164 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAI-----MPN---------GDHIVS 209
Query: 740 GSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPL 919
S D T K+W+V +G C +T GH V + + G + S D T+R W + + E
Sbjct: 210 ASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK 269
Query: 920 RVFREHQGSIICLELVNRHVY----------------------SGSADRTVKCWLADTGE 1033
REH+ + C+ Y SGS D+T+K W TG
Sbjct: 270 AELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 329
Query: 1034 RVRTFAAHRHSVSALKYHAG 1093
+ T H + V + +H+G
Sbjct: 330 CLMTLVGHDNWVRGVLFHSG 349
>ref|NP_003930.1| F-box/WD repeat-containing protein 1A isoform 2 [Homo sapiens].
Length = 569
Score = 114 bits (286), Expect = 2e-25
Identities = 70/241 (29%), Positives = 107/241 (44%), Gaps = 3/241 (1%)
Frame = +2
Query: 302 LSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKW 481
L D Q++++G D T ++W +C +L GH V Q ++ T S+D T+R W
Sbjct: 273 LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVW 332
Query: 482 DVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKG---QVSREFRGHRNC 652
DV TG+ L H V + N + + S DR+ W + + R GHR
Sbjct: 333 DVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA 392
Query: 653 VLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCL 832
V + + + +V+ S D T KVW ++ +TL GH + C
Sbjct: 393 VNVVDFDDKY----------------IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC- 435
Query: 833 VLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQGSIICLELVNRHVYSGSADRTVKC 1012
L +GS+D TIR WDI G LRV H+ + C+ N+ + SG+ D +K
Sbjct: 436 -LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKV 494
Query: 1013 W 1015
W
Sbjct: 495 W 495
Score = 108 bits (270), Expect = 1e-23
Identities = 72/264 (27%), Positives = 115/264 (43%), Gaps = 12/264 (4%)
Frame = +2
Query: 260 RVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDE 439
R+ H G + L L D + ++TGS D T R+W G+ L H V + +
Sbjct: 301 RILTGHTGSV--LCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG 358
Query: 440 AAFTCSADCTIRKWDVLTGQCL---QVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVD 610
TCS D +I WD+ + + +V GH + VN + + + S+S DRT + W+
Sbjct: 359 MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTS 418
Query: 611 KGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCC 790
+ R GH+ + L Y L+V+GS+D T ++W + G C
Sbjct: 419 TCEFVRTLNGHKRGIACLQY----------------RDRLVVSGSSDNTIRLWDIECGAC 462
Query: 791 HQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSG-EP--------LRVFREHQG 943
+ L GH V C+ D +G+ D I+ WD+++ +P LR EH G
Sbjct: 463 LRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG 520
Query: 944 SIICLELVNRHVYSGSADRTVKCW 1015
+ L+ + S S D T+ W
Sbjct: 521 RVFRLQFDEFQIVSSSHDDTILIW 544
Score = 95.1 bits (235), Expect = 1e-19
Identities = 63/223 (28%), Positives = 100/223 (44%), Gaps = 3/223 (1%)
Frame = +2
Query: 425 QLEDEAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWS 604
Q +D+ + D TI+ WD T +C ++ GHT V + + + S D T R W
Sbjct: 274 QYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWD 333
Query: 605 VDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASG 784
V+ G++ H VL L ++ G++VT S D + VW +AS
Sbjct: 334 VNTGEMLNTLIHHCEAVLHLRFN----------------NGMMVTCSKDRSIAVWDMASP 377
Query: 785 C---CHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQGSIIC 955
+ L GH AV V+D + S D TI+ W+ + E +R H+ I C
Sbjct: 378 TDITLRRVLVGHRAAVN--VVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC 435
Query: 956 LELVNRHVYSGSADRTVKCWLADTGERVRTFAAHRHSVSALKY 1084
L+ +R V SGS+D T++ W + G +R H V +++
Sbjct: 436 LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF 478
Score = 60.8 bits (146), Expect = 3e-09
Identities = 35/103 (33%), Positives = 54/103 (52%)
Frame = +2
Query: 785 CCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQGSIICLEL 964
C +T +G V CL D +G D TI+ WD + E R+ H GS++CL+
Sbjct: 262 CRSETSKG----VYCLQYDD--QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY 315
Query: 965 VNRHVYSGSADRTVKCWLADTGERVRTFAAHRHSVSALKYHAG 1093
R + +GS+D TV+ W +TGE + T H +V L+++ G
Sbjct: 316 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG 358
Score = 55.5 bits (132), Expect = 1e-07
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 9/124 (7%)
Frame = +2
Query: 257 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED 436
+R H+ GI L + +++GS D T RLW G C +L+GHE V + ++
Sbjct: 423 VRTLNGHKRGIACLQYRD--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN 480
Query: 437 EAAFTCSADCTIRKWDVLTG---------QCLQVFRGHTSIVNRILVTNNQLFSSSYDRT 589
+ + + D I+ WD++ CL+ H+ V R+ Q+ SSS+D T
Sbjct: 481 KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDT 540
Query: 590 ARAW 601
W
Sbjct: 541 ILIW 544
>ref|NP_378663.1| F-box/WD repeat-containing protein 1A isoform 1 [Homo sapiens].
Length = 605
Score = 114 bits (286), Expect = 2e-25
Identities = 70/241 (29%), Positives = 107/241 (44%), Gaps = 3/241 (1%)
Frame = +2
Query: 302 LSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKW 481
L D Q++++G D T ++W +C +L GH V Q ++ T S+D T+R W
Sbjct: 309 LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVW 368
Query: 482 DVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKG---QVSREFRGHRNC 652
DV TG+ L H V + N + + S DR+ W + + R GHR
Sbjct: 369 DVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA 428
Query: 653 VLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCL 832
V + + + +V+ S D T KVW ++ +TL GH + C
Sbjct: 429 VNVVDFDDKY----------------IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC- 471
Query: 833 VLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQGSIICLELVNRHVYSGSADRTVKC 1012
L +GS+D TIR WDI G LRV H+ + C+ N+ + SG+ D +K
Sbjct: 472 -LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKV 530
Query: 1013 W 1015
W
Sbjct: 531 W 531
Score = 108 bits (270), Expect = 1e-23
Identities = 72/264 (27%), Positives = 115/264 (43%), Gaps = 12/264 (4%)
Frame = +2
Query: 260 RVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDE 439
R+ H G + L L D + ++TGS D T R+W G+ L H V + +
Sbjct: 337 RILTGHTGSV--LCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG 394
Query: 440 AAFTCSADCTIRKWDVLTGQCL---QVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVD 610
TCS D +I WD+ + + +V GH + VN + + + S+S DRT + W+
Sbjct: 395 MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTS 454
Query: 611 KGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCC 790
+ R GH+ + L Y L+V+GS+D T ++W + G C
Sbjct: 455 TCEFVRTLNGHKRGIACLQY----------------RDRLVVSGSSDNTIRLWDIECGAC 498
Query: 791 HQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSG-EP--------LRVFREHQG 943
+ L GH V C+ D +G+ D I+ WD+++ +P LR EH G
Sbjct: 499 LRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG 556
Query: 944 SIICLELVNRHVYSGSADRTVKCW 1015
+ L+ + S S D T+ W
Sbjct: 557 RVFRLQFDEFQIVSSSHDDTILIW 580
Score = 95.1 bits (235), Expect = 1e-19
Identities = 63/223 (28%), Positives = 100/223 (44%), Gaps = 3/223 (1%)
Frame = +2
Query: 425 QLEDEAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWS 604
Q +D+ + D TI+ WD T +C ++ GHT V + + + S D T R W
Sbjct: 310 QYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWD 369
Query: 605 VDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASG 784
V+ G++ H VL L ++ G++VT S D + VW +AS
Sbjct: 370 VNTGEMLNTLIHHCEAVLHLRFN----------------NGMMVTCSKDRSIAVWDMASP 413
Query: 785 C---CHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQGSIIC 955
+ L GH AV V+D + S D TI+ W+ + E +R H+ I C
Sbjct: 414 TDITLRRVLVGHRAAVN--VVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC 471
Query: 956 LELVNRHVYSGSADRTVKCWLADTGERVRTFAAHRHSVSALKY 1084
L+ +R V SGS+D T++ W + G +R H V +++
Sbjct: 472 LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF 514
Score = 60.8 bits (146), Expect = 3e-09
Identities = 35/103 (33%), Positives = 54/103 (52%)
Frame = +2
Query: 785 CCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQGSIICLEL 964
C +T +G V CL D +G D TI+ WD + E R+ H GS++CL+
Sbjct: 298 CRSETSKG----VYCLQYDD--QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY 351
Query: 965 VNRHVYSGSADRTVKCWLADTGERVRTFAAHRHSVSALKYHAG 1093
R + +GS+D TV+ W +TGE + T H +V L+++ G
Sbjct: 352 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG 394
Score = 55.5 bits (132), Expect = 1e-07
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 9/124 (7%)
Frame = +2
Query: 257 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED 436
+R H+ GI L + +++GS D T RLW G C +L+GHE V + ++
Sbjct: 459 VRTLNGHKRGIACLQYRD--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN 516
Query: 437 EAAFTCSADCTIRKWDVLTG---------QCLQVFRGHTSIVNRILVTNNQLFSSSYDRT 589
+ + + D I+ WD++ CL+ H+ V R+ Q+ SSS+D T
Sbjct: 517 KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDT 576
Query: 590 ARAW 601
W
Sbjct: 577 ILIW 580
>ref|NP_036432.2| F-box/WD repeat-containing protein 11 isoform C [Homo sapiens].
Length = 542
Score = 114 bits (285), Expect = 2e-25
Identities = 68/241 (28%), Positives = 108/241 (44%), Gaps = 3/241 (1%)
Frame = +2
Query: 302 LSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKW 481
L D +++++G D + ++W +C +L GH V Q ++ T S+D T+R W
Sbjct: 246 LQYDDEKIISGLRDNSIKIWDKTSLECLKVLTGHTGSVLCLQYDERVIVTGSSDSTVRVW 305
Query: 482 DVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKG---QVSREFRGHRNC 652
DV TG+ L H V + +N + + S DR+ W + + R GHR
Sbjct: 306 DVNTGEVLNTLIHHNEAVLHLRFSNGLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAA 365
Query: 653 VLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCL 832
V + + + +V+ S D T KVW ++ +TL GH + C
Sbjct: 366 VNVVDFDDKY----------------IVSASGDRTIKVWSTSTCEFVRTLNGHKRGIAC- 408
Query: 833 VLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQGSIICLELVNRHVYSGSADRTVKC 1012
L +GS+D TIR WDI G LRV H+ + C+ N+ + SG+ D +K
Sbjct: 409 -LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKV 467
Query: 1013 W 1015
W
Sbjct: 468 W 468
Score = 111 bits (277), Expect = 2e-24
Identities = 74/265 (27%), Positives = 115/265 (43%), Gaps = 12/265 (4%)
Frame = +2
Query: 257 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED 436
L+V H G + L L D + ++TGS D T R+W G+ L H V + +
Sbjct: 273 LKVLTGHTGSV--LCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHLRFSN 330
Query: 437 EAAFTCSADCTIRKWDVLTGQCL---QVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSV 607
TCS D +I WD+ + + +V GH + VN + + + S+S DRT + WS
Sbjct: 331 GLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWST 390
Query: 608 DKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGC 787
+ R GH+ + L Y L+V+GS+D T ++W + G
Sbjct: 391 STCEFVRTLNGHKRGIACLQY----------------RDRLVVSGSSDNTIRLWDIECGA 434
Query: 788 CHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSG-EP--------LRVFREHQ 940
C + L GH V C+ D +G+ D I+ WD+ + +P LR EH
Sbjct: 435 CLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHS 492
Query: 941 GSIICLELVNRHVYSGSADRTVKCW 1015
G + L+ + S S D T+ W
Sbjct: 493 GRVFRLQFDEFQIISSSHDDTILIW 517
Score = 101 bits (251), Expect = 2e-21
Identities = 67/223 (30%), Positives = 100/223 (44%), Gaps = 3/223 (1%)
Frame = +2
Query: 425 QLEDEAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWS 604
Q +DE + D +I+ WD + +CL+V GHT V + + + S D T R W
Sbjct: 247 QYDDEKIISGLRDNSIKIWDKTSLECLKVLTGHTGSVLCLQYDERVIVTGSSDSTVRVWD 306
Query: 605 VDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASG 784
V+ G+V H VL L +S GL+VT S D + VW +AS
Sbjct: 307 VNTGEVLNTLIHHNEAVLHLRFS----------------NGLMVTCSKDRSIAVWDMASA 350
Query: 785 C---CHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQGSIIC 955
+ L GH AV V+D + S D TI+ W + E +R H+ I C
Sbjct: 351 TDITLRRVLVGHRAAVN--VVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIAC 408
Query: 956 LELVNRHVYSGSADRTVKCWLADTGERVRTFAAHRHSVSALKY 1084
L+ +R V SGS+D T++ W + G +R H V +++
Sbjct: 409 LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF 451
Score = 61.6 bits (148), Expect = 2e-09
Identities = 33/91 (36%), Positives = 49/91 (53%)
Frame = +2
Query: 821 VLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQGSIICLELVNRHVYSGSADR 1000
V CL D +G D +I+ WD S E L+V H GS++CL+ R + +GS+D
Sbjct: 243 VYCLQYDD--EKIISGLRDNSIKIWDKTSLECLKVLTGHTGSVLCLQYDERVIVTGSSDS 300
Query: 1001 TVKCWLADTGERVRTFAAHRHSVSALKYHAG 1093
TV+ W +TGE + T H +V L++ G
Sbjct: 301 TVRVWDVNTGEVLNTLIHHNEAVLHLRFSNG 331
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 48,097,502
Number of extensions: 1336054
Number of successful extensions: 10130
Number of sequences better than 1.0e-05: 124
Number of HSP's gapped: 8472
Number of HSP's successfully gapped: 352
Length of query: 495
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 388
Effective length of database: 14,770,016
Effective search space: 5730766208
Effective search space used: 5730766208
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVR01_0011_G02
(1487 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532767.2| PREDICTED: similar to F-box and WD-40 domain pr... 373 e-103
Alignment gi|XP_532689.2| PREDICTED: similar to F-box protein FBW7 isofor... 145 1e-34
Alignment gi|XP_867720.1| PREDICTED: similar to F-box protein FBW7 isofor... 145 1e-34
Alignment gi|XP_853624.1| PREDICTED: similar to F-box protein FBW7 isofor... 145 1e-34
Alignment gi|XP_867701.1| PREDICTED: similar to F-box protein FBW7 isofor... 136 6e-32
Alignment gi|XP_534593.2| PREDICTED: similar to CG7568-PA [Canis familiar... 119 1e-26
Alignment gi|XP_537775.2| PREDICTED: similar to platelet-activating facto... 117 3e-26
Alignment gi|XP_854482.1| PREDICTED: similar to platelet-activating facto... 117 3e-26
Alignment gi|XP_868508.1| PREDICTED: similar to platelet-activating facto... 117 3e-26
Alignment gi|XP_861929.1| PREDICTED: similar to F-box/WD-repeat protein 1... 115 8e-26
>ref|XP_532767.2| PREDICTED: similar to F-box and WD-40 domain protein 7, archipelago
homolog [Canis familiaris].
Length = 544
Score = 373 bits (958), Expect = e-103
Identities = 189/239 (79%), Positives = 195/239 (81%)
Frame = +2
Query: 398 GHESYVTFCQLEDEAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLFSSS 577
GHESYVTFCQLEDEAAFTCSADCTIRKWDV TGQCLQVFRGHTSIVNRILV NNQLFSSS
Sbjct: 178 GHESYVTFCQLEDEAAFTCSADCTIRKWDVRTGQCLQVFRGHTSIVNRILVANNQLFSSS 237
Query: 578 YDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGT 757
YDRTARAWSVDKGQVS+EFRGHRNCVLTLAYSAPWDLPGAPC EE GGLLVTGSTDGT
Sbjct: 238 YDRTARAWSVDKGQVSQEFRGHRNCVLTLAYSAPWDLPGAPCAEE--VGGLLVTGSTDGT 295
Query: 758 AKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREH 937
AKVWQVASGCCHQTLRGHTGAVLCLVLDTP HTAFTGSTDATIRAWDILSGE LRVFREH
Sbjct: 296 AKVWQVASGCCHQTLRGHTGAVLCLVLDTPSHTAFTGSTDATIRAWDILSGEQLRVFREH 355
Query: 938 QGSIICLELVNRHVYSGSADRTVKCWLADTGERVRTFAAHRHSVSALKYHAGTCK*PPR 1114
QGS+ICLE S +A + + ER R +A S S C PR
Sbjct: 356 QGSVICLEC------SRAAGTPARAPWTPSLERCRGCSAATPSSSTASRCTSRCSTRPR 408
Score = 106 bits (265), Expect = 5e-23
Identities = 49/49 (100%), Positives = 49/49 (100%)
Frame = +2
Query: 251 SALRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQ 397
SALRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQ
Sbjct: 6 SALRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQ 54
>ref|XP_532689.2| PREDICTED: similar to F-box protein FBW7 isoform 3 isoform 1 [Canis
familiaris].
Length = 589
Score = 145 bits (365), Expect = 1e-34
Identities = 83/261 (31%), Positives = 127/261 (48%), Gaps = 3/261 (1%)
Frame = +2
Query: 314 GQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVLT 493
G R+++GS+D T ++WS G+C L GH V Q+ D + S D T++ W+ T
Sbjct: 273 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAET 332
Query: 494 GQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYS 673
G+C+ GHTS V + + ++ S S D T R W ++ GQ GH V + Y
Sbjct: 333 GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD 392
Query: 674 APWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGH 853
G +V+G+ D KVW + C TL+GHT V L D G
Sbjct: 393 ----------------GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GI 434
Query: 854 TAFTGSTDATIRAWDILSGEPLRVFREHQGSIICLELVNRHVYSGSADRTVKCWLADTGE 1033
+GS D +IR WD+ +G + HQ +EL + + SG+AD TVK W TG+
Sbjct: 435 HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQ 494
Query: 1034 RVRTFAA---HRHSVSALKYH 1087
++T H+ +V+ L+++
Sbjct: 495 CLQTLQGPNKHQSAVTCLQFN 515
Score = 142 bits (358), Expect = 8e-34
Identities = 83/265 (31%), Positives = 129/265 (48%), Gaps = 3/265 (1%)
Frame = +2
Query: 257 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED 436
LR H GG+ W S D +++GS D T ++W+ G+C L GH S V L +
Sbjct: 296 LRTLVGHTGGV-WSSQMRDNI-IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE 353
Query: 437 EAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKG 616
+ + S D T+R WD+ TGQCL V GH + V + ++ S +YD + W +
Sbjct: 354 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE 413
Query: 617 QVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQ 796
+GH N V +L + G +V+GS D + +VW V +G C
Sbjct: 414 TCLHTLQGHTNRVYSLQFD----------------GIHVVSGSLDTSIRVWDVETGNCIH 457
Query: 797 TLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFR---EHQGSIICLELV 967
TL GH L ++ + +G+ D+T++ WDI +G+ L+ + +HQ ++ CL+
Sbjct: 458 TLTGHQS--LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN 515
Query: 968 NRHVYSGSADRTVKCWLADTGERVR 1042
V + S D TVK W TGE +R
Sbjct: 516 KNFVITSSDDGTVKLWDLKTGEFIR 540
Score = 100 bits (249), Expect = 4e-21
Identities = 61/194 (31%), Positives = 92/194 (47%), Gaps = 1/194 (0%)
Frame = +2
Query: 506 QVFRGHTS-IVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPW 682
+V +GH ++ + N++ S S D T + WS G+ R GH V W
Sbjct: 256 KVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV--------W 307
Query: 683 DLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAF 862
+ ++++GSTD T KVW +G C TL GHT V C+ L
Sbjct: 308 --------SSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVV 357
Query: 863 TGSTDATIRAWDILSGEPLRVFREHQGSIICLELVNRHVYSGSADRTVKCWLADTGERVR 1042
+GS DAT+R WDI +G+ L V H ++ C++ R V SG+ D VK W +T +
Sbjct: 358 SGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLH 417
Query: 1043 TFAAHRHSVSALKY 1084
T H + V +L++
Sbjct: 418 TLQGHTNRVYSLQF 431
>ref|XP_867720.1| PREDICTED: similar to F-box protein FBW7 isoform 2 isoform 5 [Canis
familiaris].
Length = 637
Score = 145 bits (365), Expect = 1e-34
Identities = 83/261 (31%), Positives = 127/261 (48%), Gaps = 3/261 (1%)
Frame = +2
Query: 314 GQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVLT 493
G R+++GS+D T ++WS G+C L GH V Q+ D + S D T++ W+ T
Sbjct: 321 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAET 380
Query: 494 GQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYS 673
G+C+ GHTS V + + ++ S S D T R W ++ GQ GH V + Y
Sbjct: 381 GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD 440
Query: 674 APWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGH 853
G +V+G+ D KVW + C TL+GHT V L D G
Sbjct: 441 ----------------GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GI 482
Query: 854 TAFTGSTDATIRAWDILSGEPLRVFREHQGSIICLELVNRHVYSGSADRTVKCWLADTGE 1033
+GS D +IR WD+ +G + HQ +EL + + SG+AD TVK W TG+
Sbjct: 483 HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQ 542
Query: 1034 RVRTFAA---HRHSVSALKYH 1087
++T H+ +V+ L+++
Sbjct: 543 CLQTLQGPNKHQSAVTCLQFN 563
Score = 142 bits (358), Expect = 8e-34
Identities = 83/265 (31%), Positives = 129/265 (48%), Gaps = 3/265 (1%)
Frame = +2
Query: 257 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED 436
LR H GG+ W S D +++GS D T ++W+ G+C L GH S V L +
Sbjct: 344 LRTLVGHTGGV-WSSQMRDNI-IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE 401
Query: 437 EAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKG 616
+ + S D T+R WD+ TGQCL V GH + V + ++ S +YD + W +
Sbjct: 402 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE 461
Query: 617 QVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQ 796
+GH N V +L + G +V+GS D + +VW V +G C
Sbjct: 462 TCLHTLQGHTNRVYSLQFD----------------GIHVVSGSLDTSIRVWDVETGNCIH 505
Query: 797 TLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFR---EHQGSIICLELV 967
TL GH L ++ + +G+ D+T++ WDI +G+ L+ + +HQ ++ CL+
Sbjct: 506 TLTGHQS--LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN 563
Query: 968 NRHVYSGSADRTVKCWLADTGERVR 1042
V + S D TVK W TGE +R
Sbjct: 564 KNFVITSSDDGTVKLWDLKTGEFIR 588
Score = 100 bits (249), Expect = 4e-21
Identities = 61/194 (31%), Positives = 92/194 (47%), Gaps = 1/194 (0%)
Frame = +2
Query: 506 QVFRGHTS-IVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPW 682
+V +GH ++ + N++ S S D T + WS G+ R GH V W
Sbjct: 304 KVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV--------W 355
Query: 683 DLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAF 862
+ ++++GSTD T KVW +G C TL GHT V C+ L
Sbjct: 356 --------SSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVV 405
Query: 863 TGSTDATIRAWDILSGEPLRVFREHQGSIICLELVNRHVYSGSADRTVKCWLADTGERVR 1042
+GS DAT+R WDI +G+ L V H ++ C++ R V SG+ D VK W +T +
Sbjct: 406 SGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLH 465
Query: 1043 TFAAHRHSVSALKY 1084
T H + V +L++
Sbjct: 466 TLQGHTNRVYSLQF 479
>ref|XP_853624.1| PREDICTED: similar to F-box protein FBW7 isoform 2 isoform 2 [Canis
familiaris].
Length = 627
Score = 145 bits (365), Expect = 1e-34
Identities = 83/261 (31%), Positives = 127/261 (48%), Gaps = 3/261 (1%)
Frame = +2
Query: 314 GQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVLT 493
G R+++GS+D T ++WS G+C L GH V Q+ D + S D T++ W+ T
Sbjct: 311 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAET 370
Query: 494 GQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYS 673
G+C+ GHTS V + + ++ S S D T R W ++ GQ GH V + Y
Sbjct: 371 GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD 430
Query: 674 APWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGH 853
G +V+G+ D KVW + C TL+GHT V L D G
Sbjct: 431 ----------------GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GI 472
Query: 854 TAFTGSTDATIRAWDILSGEPLRVFREHQGSIICLELVNRHVYSGSADRTVKCWLADTGE 1033
+GS D +IR WD+ +G + HQ +EL + + SG+AD TVK W TG+
Sbjct: 473 HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQ 532
Query: 1034 RVRTFAA---HRHSVSALKYH 1087
++T H+ +V+ L+++
Sbjct: 533 CLQTLQGPNKHQSAVTCLQFN 553
Score = 142 bits (358), Expect = 8e-34
Identities = 83/265 (31%), Positives = 129/265 (48%), Gaps = 3/265 (1%)
Frame = +2
Query: 257 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED 436
LR H GG+ W S D +++GS D T ++W+ G+C L GH S V L +
Sbjct: 334 LRTLVGHTGGV-WSSQMRDNI-IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE 391
Query: 437 EAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKG 616
+ + S D T+R WD+ TGQCL V GH + V + ++ S +YD + W +
Sbjct: 392 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE 451
Query: 617 QVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQ 796
+GH N V +L + G +V+GS D + +VW V +G C
Sbjct: 452 TCLHTLQGHTNRVYSLQFD----------------GIHVVSGSLDTSIRVWDVETGNCIH 495
Query: 797 TLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFR---EHQGSIICLELV 967
TL GH L ++ + +G+ D+T++ WDI +G+ L+ + +HQ ++ CL+
Sbjct: 496 TLTGHQS--LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN 553
Query: 968 NRHVYSGSADRTVKCWLADTGERVR 1042
V + S D TVK W TGE +R
Sbjct: 554 KNFVITSSDDGTVKLWDLKTGEFIR 578
Score = 100 bits (249), Expect = 4e-21
Identities = 61/194 (31%), Positives = 92/194 (47%), Gaps = 1/194 (0%)
Frame = +2
Query: 506 QVFRGHTS-IVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPW 682
+V +GH ++ + N++ S S D T + WS G+ R GH V W
Sbjct: 294 KVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV--------W 345
Query: 683 DLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAF 862
+ ++++GSTD T KVW +G C TL GHT V C+ L
Sbjct: 346 --------SSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVV 395
Query: 863 TGSTDATIRAWDILSGEPLRVFREHQGSIICLELVNRHVYSGSADRTVKCWLADTGERVR 1042
+GS DAT+R WDI +G+ L V H ++ C++ R V SG+ D VK W +T +
Sbjct: 396 SGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLH 455
Query: 1043 TFAAHRHSVSALKY 1084
T H + V +L++
Sbjct: 456 TLQGHTNRVYSLQF 469
>ref|XP_867701.1| PREDICTED: similar to F-box protein FBW7 isoform 2 isoform 3 [Canis
familiaris].
Length = 279
Score = 136 bits (342), Expect = 6e-32
Identities = 75/243 (30%), Positives = 120/243 (49%), Gaps = 3/243 (1%)
Frame = +2
Query: 323 LLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVLTGQC 502
+++GS D T ++W+ G+C L GH S V L ++ + S D T+R WD+ TGQC
Sbjct: 6 IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQC 65
Query: 503 LQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPW 682
L V GH + V + ++ S +YD + W + +GH N V +L +
Sbjct: 66 LHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--- 122
Query: 683 DLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAF 862
G +V+GS D + +VW V +G C TL GH L ++ +
Sbjct: 123 -------------GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--LTSGMELKDNILV 167
Query: 863 TGSTDATIRAWDILSGEPLRVFR---EHQGSIICLELVNRHVYSGSADRTVKCWLADTGE 1033
+G+ D+T++ WDI +G+ L+ + +HQ ++ CL+ V + S D TVK W TGE
Sbjct: 168 SGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGE 227
Query: 1034 RVR 1042
+R
Sbjct: 228 FIR 230
Score = 113 bits (282), Expect = 5e-25
Identities = 68/223 (30%), Positives = 105/223 (47%), Gaps = 3/223 (1%)
Frame = +2
Query: 428 LEDEAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSV 607
+ D + S D T++ W+ TG+C+ GHTS V + + ++ S S D T R W +
Sbjct: 1 MRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDI 60
Query: 608 DKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGC 787
+ GQ GH V + Y G +V+G+ D KVW +
Sbjct: 61 ETGQCLHVLMGHVAAVRCVQYD----------------GRRVVSGAYDFMVKVWDPETET 104
Query: 788 CHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQGSIICLELV 967
C TL+GHT V L D G +GS D +IR WD+ +G + HQ +EL
Sbjct: 105 CLHTLQGHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK 162
Query: 968 NRHVYSGSADRTVKCWLADTGERVRTFAA---HRHSVSALKYH 1087
+ + SG+AD TVK W TG+ ++T H+ +V+ L+++
Sbjct: 163 DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN 205
Score = 110 bits (274), Expect = 5e-24
Identities = 61/205 (29%), Positives = 97/205 (47%), Gaps = 3/205 (1%)
Frame = +2
Query: 317 QRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVLTG 496
+R+++GS D T R+W GQC +L GH + V Q + + + D ++ WD T
Sbjct: 44 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE 103
Query: 497 QCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSA 676
CL +GHT+ V + + S S D + R W V+ G GH++ +
Sbjct: 104 TCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM---- 159
Query: 677 PWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRG---HTGAVLCLVLDTP 847
+ +LV+G+ D T K+W + +G C QTL+G H AV CL +
Sbjct: 160 ------------ELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK- 206
Query: 848 GHTAFTGSTDATIRAWDILSGEPLR 922
+ T S D T++ WD+ +GE +R
Sbjct: 207 -NFVITSSDDGTVKLWDLKTGEFIR 230
Score = 84.7 bits (208), Expect = 2e-16
Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 3/161 (1%)
Frame = +2
Query: 311 DGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVL 490
DG+R+++G+ D ++W C LQGH + V Q + + S D +IR WDV
Sbjct: 82 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVE 141
Query: 491 TGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRG---HRNCVLT 661
TG C+ GH S+ + + + +N L S + D T + W + GQ + +G H++ V
Sbjct: 142 TGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC 201
Query: 662 LAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASG 784
L ++ ++T S DGT K+W + +G
Sbjct: 202 LQFNK----------------NFVITSSDDGTVKLWDLKTG 226
Score = 78.6 bits (192), Expect = 1e-14
Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Frame = +2
Query: 299 SLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRK 478
SL DG +++GS D + R+W G C L GH+S + +L+D + +AD T++
Sbjct: 118 SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKI 177
Query: 479 WDVLTGQCLQVFRG---HTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSR 628
WD+ TGQCLQ +G H S V + N + +SS D T + W + G+ R
Sbjct: 178 WDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIR 230
>ref|XP_534593.2| PREDICTED: similar to CG7568-PA [Canis familiaris].
Length = 415
Score = 119 bits (297), Expect = 1e-26
Identities = 71/236 (30%), Positives = 104/236 (44%), Gaps = 4/236 (1%)
Frame = +2
Query: 392 LQGHESYVTFCQLEDEAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQ--L 565
+Q E +T + E +R+ T +V R H + + + +
Sbjct: 48 IQKAEPLITASRSEQVKLLIQRLQDKLRQHSNHTFYLFKVLRAHILPLTNVALNKSGSCF 107
Query: 566 FSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGS 745
+ SYDRT + W G+ GHRN V +A++ P+ G + TGS
Sbjct: 108 ITGSYDRTCKLWDTASGEELHTLEGHRNVVYAIAFNNPY-------------GDKIATGS 154
Query: 746 TDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRV 925
D T K+W V +G C+ T RGHT ++CL + TGS D T + WDI SGE +
Sbjct: 155 FDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQSGEEVFT 214
Query: 926 FREHQGSIICLEL--VNRHVYSGSADRTVKCWLADTGERVRTFAAHRHSVSALKYH 1087
R H II L + +GS D TV W ADTG +V T H +S+ ++
Sbjct: 215 LRGHSAEIISLSFNTSGDRIVTGSFDHTVAVWEADTGRKVYTLIGHCAEISSALFN 270
Score = 118 bits (295), Expect = 2e-26
Identities = 82/299 (27%), Positives = 128/299 (42%), Gaps = 35/299 (11%)
Frame = +2
Query: 296 LSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYV---TFCQLEDEAAFTCSADC 466
++L+ G +TGS D T +LW TA G+ L+GH + V F + T S D
Sbjct: 98 VALNKSGSCFITGSYDRTCKLWDTASGEELHTLEGHRNVVYAIAFNNPYGDKIATGSFDK 157
Query: 467 TIRKWDVLTGQCLQVFRGHTSIVNRILVT--NNQLFSSSYDRTARAWSVDKGQVSREFRG 640
T + W V TG+C FRGHT+ + + + + + S D TA+ W + G+ RG
Sbjct: 158 TCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQSGEEVFTLRG 217
Query: 641 HRNCVLTLAYSAPWD------LPGAPCVEEAVAG----------------------GLLV 736
H +++L+++ D V EA G L++
Sbjct: 218 HSAEIISLSFNTSGDRIVTGSFDHTVAVWEADTGRKVYTLIGHCAEISSALFNWDCSLIL 277
Query: 737 TGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEP 916
TGS D T +W ++G C TL GH +L D G T S D T R + + +
Sbjct: 278 TGSMDKTCMLWDASNGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARVFSAATRKC 337
Query: 917 LRVFREHQGSI--ICLELVNRHVYSGSADRTVKCWLADTGERVRTFAAHRHSVSALKYH 1087
L H+G I I + +GSAD T + W A TG+ ++ H + + ++
Sbjct: 338 LTKLEGHEGEISKISFNPQGNRLLTGSADETARIWDAQTGQCLQVLEGHTDEIFSCAFN 396
Score = 103 bits (258), Expect = 3e-22
Identities = 69/253 (27%), Positives = 106/253 (41%), Gaps = 6/253 (2%)
Frame = +2
Query: 275 HRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQL--EDEAAF 448
H I LS +P + TGS D TA+LW G+ L+GH + + +
Sbjct: 176 HTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQSGEEVFTLRGHSAEIISLSFNTSGDRIV 235
Query: 449 TCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVT--NNQLFSSSYDRTARAWSVDKGQV 622
T S D T+ W+ TG+ + GH + ++ L + + + S D+T W G+
Sbjct: 236 TGSFDHTVAVWEADTGRKVYTLIGHCAEISSALFNWDCSLILTGSMDKTCMLWDASNGKC 295
Query: 623 SREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTL 802
GH + +L + G L+ T S DGTA+V+ A+ C L
Sbjct: 296 VATLTGHDDEILDSCFD--------------YTGKLIATASADGTARVFSAATRKCLTKL 341
Query: 803 RGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQGSII--CLELVNRH 976
GH G + + + G+ TGS D T R WD +G+ L+V H I
Sbjct: 342 EGHEGEISKISFNPQGNRLLTGSADETARIWDAQTGQCLQVLEGHTDEIFSCAFNYKGDI 401
Query: 977 VYSGSADRTVKCW 1015
+ +GS D T + W
Sbjct: 402 IITGSKDNTCRIW 414
Score = 82.4 bits (202), Expect = 1e-15
Identities = 51/174 (29%), Positives = 80/174 (45%), Gaps = 5/174 (2%)
Frame = +2
Query: 266 CADHRGGI-NWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYV--TFCQLED 436
CA+ + NW D +LTGS D T LW ++G+C A L GH+ + +
Sbjct: 261 CAEISSALFNW-----DCSLILTGSMDKTCMLWDASNGKCVATLTGHDDEILDSCFDYTG 315
Query: 437 EAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVT--NNQLFSSSYDRTARAWSVD 610
+ T SAD T R + T +CL GH +++I N+L + S D TAR W
Sbjct: 316 KLIATASADGTARVFSAATRKCLTKLEGHEGEISKISFNPQGNRLLTGSADETARIWDAQ 375
Query: 611 KGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQ 772
GQ + GH + + + A++ G +++TGS D T ++W+
Sbjct: 376 TGQCLQVLEGHTDEIFSCAFN--------------YKGDIIITGSKDNTCRIWR 415
>ref|XP_537775.2| PREDICTED: similar to platelet-activating factor acetylhydrolase beta
subunit isoform 1 [Canis familiaris].
Length = 372
Score = 117 bits (293), Expect = 3e-26
Identities = 76/266 (28%), Positives = 123/266 (46%), Gaps = 14/266 (5%)
Frame = +2
Query: 260 RVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQL--E 433
R H + +S G+ L + S D T +LW +C + GH+ V+ +
Sbjct: 106 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPN 165
Query: 434 DEAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQ----LFSSSYDRTARAW 601
+ + S D TI+ W+V TG C++ F GH V +V NQ + S S D+T R W
Sbjct: 166 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR--MVRPNQDGTLIASCSNDQTVRVW 223
Query: 602 SVDKGQVSREFRGHRNCVLTLA------YSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAK 763
V + E R H + V ++ YS+ + G+ + G L++GS D T K
Sbjct: 224 VVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 283
Query: 764 VWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQG 943
+W V++G C TL GH V ++ + G + + D T+R WD + ++ H+
Sbjct: 284 MWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH 343
Query: 944 SIICLEL--VNRHVYSGSADRTVKCW 1015
+ L+ +V +GS D+TVK W
Sbjct: 344 FVTSLDFHKTAPYVVTGSVDQTVKVW 369
Score = 109 bits (272), Expect = 8e-24
Identities = 77/297 (25%), Positives = 121/297 (40%), Gaps = 26/297 (8%)
Frame = +2
Query: 275 HRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAF-- 448
HR + + P +++ SED T ++W G L+GH V +
Sbjct: 69 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLA 128
Query: 449 TCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNN--QLFSSSYDRTARAWSVDKGQV 622
+CSAD TI+ WD +C++ GH V+ + + N + S+S D+T + W V G
Sbjct: 129 SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYC 188
Query: 623 SREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTL 802
+ F GHR V V G L+ + S D T +VW VA+ C L
Sbjct: 189 VKTFTGHREWVRM--------------VRPNQDGTLIASCSNDQTVRVWVVATKECKAEL 234
Query: 803 RGHTGAVLCLVL--------------------DTPGHTAFTGSTDATIRAWDILSGEPLR 922
R H V C+ PG +GS D TI+ WD+ +G L
Sbjct: 235 REHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM 294
Query: 923 VFREHQGSI--ICLELVNRHVYSGSADRTVKCWLADTGERVRTFAAHRHSVSALKYH 1087
H + + + + S + D+T++ W ++T AH H V++L +H
Sbjct: 295 TLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH 351
Score = 90.5 bits (223), Expect = 4e-18
Identities = 72/260 (27%), Positives = 105/260 (40%), Gaps = 26/260 (10%)
Frame = +2
Query: 392 LQGHESYVTFCQLEDEAAFTCSA--DCTIRKWDVLTGQCLQVFRGHTSIVNRILV--TNN 559
L GH S VT + SA D TI+ WD TG + +GHT V I +
Sbjct: 66 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 125
Query: 560 QLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVT 739
L S S D T + W + R GH + V ++A +P G +V+
Sbjct: 126 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAI-----MPN---------GDHIVS 171
Query: 740 GSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPL 919
S D T K+W+V +G C +T GH V + + G + S D T+R W + + E
Sbjct: 172 ASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK 231
Query: 920 RVFREHQGSIICLELVNRHVY----------------------SGSADRTVKCWLADTGE 1033
REH+ + C+ Y SGS D+T+K W TG
Sbjct: 232 AELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 291
Query: 1034 RVRTFAAHRHSVSALKYHAG 1093
+ T H + V + +H+G
Sbjct: 292 CLMTLVGHDNWVRGVLFHSG 311
>ref|XP_854482.1| PREDICTED: similar to platelet-activating factor acetylhydrolase beta
subunit isoform 2 [Canis familiaris].
Length = 410
Score = 117 bits (293), Expect = 3e-26
Identities = 76/266 (28%), Positives = 123/266 (46%), Gaps = 14/266 (5%)
Frame = +2
Query: 260 RVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQL--E 433
R H + +S G+ L + S D T +LW +C + GH+ V+ +
Sbjct: 144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPN 203
Query: 434 DEAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQ----LFSSSYDRTARAW 601
+ + S D TI+ W+V TG C++ F GH V +V NQ + S S D+T R W
Sbjct: 204 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR--MVRPNQDGTLIASCSNDQTVRVW 261
Query: 602 SVDKGQVSREFRGHRNCVLTLA------YSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAK 763
V + E R H + V ++ YS+ + G+ + G L++GS D T K
Sbjct: 262 VVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 321
Query: 764 VWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQG 943
+W V++G C TL GH V ++ + G + + D T+R WD + ++ H+
Sbjct: 322 MWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH 381
Query: 944 SIICLEL--VNRHVYSGSADRTVKCW 1015
+ L+ +V +GS D+TVK W
Sbjct: 382 FVTSLDFHKTAPYVVTGSVDQTVKVW 407
Score = 109 bits (272), Expect = 8e-24
Identities = 77/297 (25%), Positives = 121/297 (40%), Gaps = 26/297 (8%)
Frame = +2
Query: 275 HRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAF-- 448
HR + + P +++ SED T ++W G L+GH V +
Sbjct: 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLA 166
Query: 449 TCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNN--QLFSSSYDRTARAWSVDKGQV 622
+CSAD TI+ WD +C++ GH V+ + + N + S+S D+T + W V G
Sbjct: 167 SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYC 226
Query: 623 SREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTL 802
+ F GHR V V G L+ + S D T +VW VA+ C L
Sbjct: 227 VKTFTGHREWVRM--------------VRPNQDGTLIASCSNDQTVRVWVVATKECKAEL 272
Query: 803 RGHTGAVLCLVL--------------------DTPGHTAFTGSTDATIRAWDILSGEPLR 922
R H V C+ PG +GS D TI+ WD+ +G L
Sbjct: 273 REHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM 332
Query: 923 VFREHQGSI--ICLELVNRHVYSGSADRTVKCWLADTGERVRTFAAHRHSVSALKYH 1087
H + + + + S + D+T++ W ++T AH H V++L +H
Sbjct: 333 TLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH 389
Score = 90.5 bits (223), Expect = 4e-18
Identities = 72/260 (27%), Positives = 105/260 (40%), Gaps = 26/260 (10%)
Frame = +2
Query: 392 LQGHESYVTFCQLEDEAAFTCSA--DCTIRKWDVLTGQCLQVFRGHTSIVNRILV--TNN 559
L GH S VT + SA D TI+ WD TG + +GHT V I +
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 163
Query: 560 QLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVT 739
L S S D T + W + R GH + V ++A +P G +V+
Sbjct: 164 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAI-----MPN---------GDHIVS 209
Query: 740 GSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPL 919
S D T K+W+V +G C +T GH V + + G + S D T+R W + + E
Sbjct: 210 ASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK 269
Query: 920 RVFREHQGSIICLELVNRHVY----------------------SGSADRTVKCWLADTGE 1033
REH+ + C+ Y SGS D+T+K W TG
Sbjct: 270 AELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 329
Query: 1034 RVRTFAAHRHSVSALKYHAG 1093
+ T H + V + +H+G
Sbjct: 330 CLMTLVGHDNWVRGVLFHSG 349
>ref|XP_868508.1| PREDICTED: similar to platelet-activating factor acetylhydrolase beta
subunit isoform 3 [Canis familiaris].
Length = 345
Score = 117 bits (293), Expect = 3e-26
Identities = 76/266 (28%), Positives = 123/266 (46%), Gaps = 14/266 (5%)
Frame = +2
Query: 260 RVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQL--E 433
R H + +S G+ L + S D T +LW +C + GH+ V+ +
Sbjct: 79 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPN 138
Query: 434 DEAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQ----LFSSSYDRTARAW 601
+ + S D TI+ W+V TG C++ F GH V +V NQ + S S D+T R W
Sbjct: 139 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR--MVRPNQDGTLIASCSNDQTVRVW 196
Query: 602 SVDKGQVSREFRGHRNCVLTLA------YSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAK 763
V + E R H + V ++ YS+ + G+ + G L++GS D T K
Sbjct: 197 VVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 256
Query: 764 VWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQG 943
+W V++G C TL GH V ++ + G + + D T+R WD + ++ H+
Sbjct: 257 MWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH 316
Query: 944 SIICLEL--VNRHVYSGSADRTVKCW 1015
+ L+ +V +GS D+TVK W
Sbjct: 317 FVTSLDFHKTAPYVVTGSVDQTVKVW 342
Score = 109 bits (272), Expect = 8e-24
Identities = 77/297 (25%), Positives = 121/297 (40%), Gaps = 26/297 (8%)
Frame = +2
Query: 275 HRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAF-- 448
HR + + P +++ SED T ++W G L+GH V +
Sbjct: 42 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLA 101
Query: 449 TCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNN--QLFSSSYDRTARAWSVDKGQV 622
+CSAD TI+ WD +C++ GH V+ + + N + S+S D+T + W V G
Sbjct: 102 SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYC 161
Query: 623 SREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTL 802
+ F GHR V V G L+ + S D T +VW VA+ C L
Sbjct: 162 VKTFTGHREWVRM--------------VRPNQDGTLIASCSNDQTVRVWVVATKECKAEL 207
Query: 803 RGHTGAVLCLVL--------------------DTPGHTAFTGSTDATIRAWDILSGEPLR 922
R H V C+ PG +GS D TI+ WD+ +G L
Sbjct: 208 REHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM 267
Query: 923 VFREHQGSI--ICLELVNRHVYSGSADRTVKCWLADTGERVRTFAAHRHSVSALKYH 1087
H + + + + S + D+T++ W ++T AH H V++L +H
Sbjct: 268 TLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH 324
Score = 90.5 bits (223), Expect = 4e-18
Identities = 72/260 (27%), Positives = 105/260 (40%), Gaps = 26/260 (10%)
Frame = +2
Query: 392 LQGHESYVTFCQLEDEAAFTCSA--DCTIRKWDVLTGQCLQVFRGHTSIVNRILV--TNN 559
L GH S VT + SA D TI+ WD TG + +GHT V I +
Sbjct: 39 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 98
Query: 560 QLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVT 739
L S S D T + W + R GH + V ++A +P G +V+
Sbjct: 99 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAI-----MPN---------GDHIVS 144
Query: 740 GSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPL 919
S D T K+W+V +G C +T GH V + + G + S D T+R W + + E
Sbjct: 145 ASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK 204
Query: 920 RVFREHQGSIICLELVNRHVY----------------------SGSADRTVKCWLADTGE 1033
REH+ + C+ Y SGS D+T+K W TG
Sbjct: 205 AELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 264
Query: 1034 RVRTFAAHRHSVSALKYHAG 1093
+ T H + V + +H+G
Sbjct: 265 CLMTLVGHDNWVRGVLFHSG 284
>ref|XP_861929.1| PREDICTED: similar to F-box/WD-repeat protein 1A (F-box and
WD-repeats protein beta-TrCP) (E3RSIkappaB)
(pIkappaBalpha-E3 receptor subunit) isoform 3 [Canis
familiaris].
Length = 349
Score = 115 bits (289), Expect = 8e-26
Identities = 70/241 (29%), Positives = 108/241 (44%), Gaps = 3/241 (1%)
Frame = +2
Query: 302 LSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKW 481
L D Q++++G D T ++W + +C +L GH V Q ++ T S+D T+R W
Sbjct: 53 LQYDDQKIVSGLRDNTIKIWDKSTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVW 112
Query: 482 DVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKG---QVSREFRGHRNC 652
DV TG+ L H V + N + + S DR+ W + + R GHR
Sbjct: 113 DVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA 172
Query: 653 VLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCL 832
V + + + +V+ S D T KVW ++ +TL GH + C
Sbjct: 173 VNVVDFDDKY----------------IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC- 215
Query: 833 VLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQGSIICLELVNRHVYSGSADRTVKC 1012
L +GS+D TIR WDI G LRV H+ + C+ N+ + SG+ D +K
Sbjct: 216 -LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKV 274
Query: 1013 W 1015
W
Sbjct: 275 W 275
Score = 108 bits (270), Expect = 1e-23
Identities = 72/264 (27%), Positives = 115/264 (43%), Gaps = 12/264 (4%)
Frame = +2
Query: 260 RVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDE 439
R+ H G + L L D + ++TGS D T R+W G+ L H V + +
Sbjct: 81 RILTGHTGSV--LCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG 138
Query: 440 AAFTCSADCTIRKWDVLTGQCL---QVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVD 610
TCS D +I WD+ + + +V GH + VN + + + S+S DRT + W+
Sbjct: 139 MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTS 198
Query: 611 KGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCC 790
+ R GH+ + L Y L+V+GS+D T ++W + G C
Sbjct: 199 TCEFVRTLNGHKRGIACLQY----------------RDRLVVSGSSDNTIRLWDIECGAC 242
Query: 791 HQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSG-EP--------LRVFREHQG 943
+ L GH V C+ D +G+ D I+ WD+++ +P LR EH G
Sbjct: 243 LRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG 300
Query: 944 SIICLELVNRHVYSGSADRTVKCW 1015
+ L+ + S S D T+ W
Sbjct: 301 RVFRLQFDEFQIVSSSHDDTILIW 324
Score = 95.5 bits (236), Expect = 1e-19
Identities = 63/223 (28%), Positives = 100/223 (44%), Gaps = 3/223 (1%)
Frame = +2
Query: 425 QLEDEAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWS 604
Q +D+ + D TI+ WD T +C ++ GHT V + + + S D T R W
Sbjct: 54 QYDDQKIVSGLRDNTIKIWDKSTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWD 113
Query: 605 VDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASG 784
V+ G++ H VL L ++ G++VT S D + VW +AS
Sbjct: 114 VNTGEMLNTLIHHCEAVLHLRFN----------------NGMMVTCSKDRSIAVWDMASP 157
Query: 785 C---CHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQGSIIC 955
+ L GH AV V+D + S D TI+ W+ + E +R H+ I C
Sbjct: 158 TDITLRRVLVGHRAAVN--VVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC 215
Query: 956 LELVNRHVYSGSADRTVKCWLADTGERVRTFAAHRHSVSALKY 1084
L+ +R V SGS+D T++ W + G +R H V +++
Sbjct: 216 LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF 258
Score = 61.2 bits (147), Expect = 2e-09
Identities = 35/103 (33%), Positives = 54/103 (52%)
Frame = +2
Query: 785 CCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQGSIICLEL 964
C +T +G V CL D +G D TI+ WD + E R+ H GS++CL+
Sbjct: 42 CRSETSKG----VYCLQYDD--QKIVSGLRDNTIKIWDKSTLECKRILTGHTGSVLCLQY 95
Query: 965 VNRHVYSGSADRTVKCWLADTGERVRTFAAHRHSVSALKYHAG 1093
R + +GS+D TV+ W +TGE + T H +V L+++ G
Sbjct: 96 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG 138
Score = 55.5 bits (132), Expect = 1e-07
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 9/124 (7%)
Frame = +2
Query: 257 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED 436
+R H+ GI L + +++GS D T RLW G C +L+GHE V + ++
Sbjct: 203 VRTLNGHKRGIACLQYRD--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN 260
Query: 437 EAAFTCSADCTIRKWDVLTG---------QCLQVFRGHTSIVNRILVTNNQLFSSSYDRT 589
+ + + D I+ WD++ CL+ H+ V R+ Q+ SSS+D T
Sbjct: 261 KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDT 320
Query: 590 ARAW 601
W
Sbjct: 321 ILIW 324
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 49,409,336
Number of extensions: 1402464
Number of successful extensions: 10933
Number of sequences better than 1.0e-05: 132
Number of HSP's gapped: 9113
Number of HSP's successfully gapped: 420
Length of query: 495
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 388
Effective length of database: 15,307,552
Effective search space: 5939330176
Effective search space used: 5939330176
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVR01_0011_G02
(1487 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001178268.1| WD repeat-containing protein 86 [Bos taurus]. 541 e-154
Alignment gi|XP_002687024.1| PREDICTED: WD repeat domain 86 [Bos taurus]. 453 e-127
Alignment gi|NP_001069717.1| F-box/WD repeat-containing protein 7 [Bos ta... 145 1e-34
Alignment gi|NP_001157418.1| WD repeat-containing protein 38 [Bos taurus]. 139 5e-33
Alignment gi|NP_001069398.1| WD repeat-containing protein 69 [Bos taurus]. 119 7e-27
Alignment gi|NP_777088.1| platelet-activating factor acetylhydrolase IB s... 117 3e-26
Alignment gi|NP_001076944.1| F-box/WD repeat-containing protein 1A [Bos t... 115 8e-26
Alignment gi|XP_002696296.1| PREDICTED: F-box and WD repeat domain contai... 114 2e-25
Alignment gi|XP_612428.5| PREDICTED: F-box and WD repeat domain containin... 114 2e-25
Alignment gi|NP_001178407.1| transcription initiation factor TFIID subuni... 111 1e-24
>ref|NP_001178268.1| WD repeat-containing protein 86 [Bos taurus].
Length = 371
Score = 541 bits (1395), Expect = e-154
Identities = 261/282 (92%), Positives = 268/282 (95%)
Frame = +2
Query: 251 SALRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQL 430
SALRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADG CCALLQGHESYVTFCQL
Sbjct: 6 SALRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGTCCALLQGHESYVTFCQL 65
Query: 431 EDEAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVD 610
EDEAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILV +NQLFSSSYDRTARAWSVD
Sbjct: 66 EDEAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVADNQLFSSSYDRTARAWSVD 125
Query: 611 KGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCC 790
+GQV+REFRGH NCVLTLAY+ GAPCVEEAVAGGLLVTGSTD TAKVWQVASGCC
Sbjct: 126 RGQVAREFRGHCNCVLTLAYA------GAPCVEEAVAGGLLVTGSTDATAKVWQVASGCC 179
Query: 791 HQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQGSIICLELVN 970
HQTLRGHTGAVLCLVLD PG TAFTGSTDAT+RAWDILSG+ LRVFREHQGS+ICLELVN
Sbjct: 180 HQTLRGHTGAVLCLVLDAPGRTAFTGSTDATVRAWDILSGQQLRVFREHQGSVICLELVN 239
Query: 971 RHVYSGSADRTVKCWLADTGERVRTFAAHRHSVSALKYHAGT 1096
RHVYSGSADRTVKCWLADTGERVRTF AHRHSVSALKYHAGT
Sbjct: 240 RHVYSGSADRTVKCWLADTGERVRTFTAHRHSVSALKYHAGT 281
Score = 97.1 bits (240), Expect = 4e-20
Identities = 50/126 (39%), Positives = 68/126 (53%)
Frame = +2
Query: 722 GGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDI 901
G L+TGS DGTA++W A G C L+GH V L+ AFT S D TIR WD+
Sbjct: 27 GQRLLTGSEDGTARLWSTADGTCCALLQGHESYVTFCQLED--EAAFTCSADCTIRKWDV 84
Query: 902 LSGEPLRVFREHQGSIICLELVNRHVYSGSADRTVKCWLADTGERVRTFAAHRHSVSALK 1081
L+G+ L+VFR H + + + + ++S S DRT + W D G+ R F H + V L
Sbjct: 85 LTGQCLQVFRGHTSIVNRILVADNQLFSSSYDRTARAWSVDRGQVAREFRGHCNCVLTLA 144
Query: 1082 YHAGTC 1099
Y C
Sbjct: 145 YAGAPC 150
Score = 80.5 bits (197), Expect = 4e-15
Identities = 51/170 (30%), Positives = 74/170 (43%), Gaps = 3/170 (1%)
Frame = +2
Query: 275 HRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTC 454
H G + L L G+ TGS D T R W GQ + + H+ V +L + ++
Sbjct: 186 HTGAVLCLVLDAPGRTAFTGSTDATVRAWDILSGQQLRVFREHQGSVICLELVNRHVYSG 245
Query: 455 SADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREF 634
SAD T++ W TG+ ++ F H V+ + LF+ S D ARA+ G + R F
Sbjct: 246 SADRTVKCWLADTGERVRTFTAHRHSVSALKYHAGTLFTGSGDARARAFDAQSGALRRVF 305
Query: 635 RGHR---NCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQV 775
RGH NC+ V G +L T S DG ++W V
Sbjct: 306 RGHAFVINCI-------------------QVHGQVLYTASHDGALRLWDV 336
>ref|XP_002687024.1| PREDICTED: WD repeat domain 86 [Bos taurus].
Length = 507
Score = 453 bits (1165), Expect = e-127
Identities = 217/238 (91%), Positives = 226/238 (94%)
Frame = +2
Query: 251 SALRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQL 430
SALRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADG CCALLQGHESYVTFCQL
Sbjct: 6 SALRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGTCCALLQGHESYVTFCQL 65
Query: 431 EDEAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVD 610
EDEAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILV +NQLFSSSYDRTARAWSVD
Sbjct: 66 EDEAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVADNQLFSSSYDRTARAWSVD 125
Query: 611 KGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCC 790
+GQV+REFRGH NCVLTLAY+ GAPC+EEAVAGGLLVTGSTD TAKVWQVASGCC
Sbjct: 126 RGQVAREFRGHCNCVLTLAYA------GAPCMEEAVAGGLLVTGSTDATAKVWQVASGCC 179
Query: 791 HQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQGSIICLEL 964
HQTLRGHTGAVLCLVLD PGHTAFTGSTDAT+RAWDILSG+ LRVFREHQGS+ICLE+
Sbjct: 180 HQTLRGHTGAVLCLVLDAPGHTAFTGSTDATVRAWDILSGQQLRVFREHQGSVICLEV 237
Score = 97.1 bits (240), Expect = 4e-20
Identities = 50/126 (39%), Positives = 68/126 (53%)
Frame = +2
Query: 722 GGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDI 901
G L+TGS DGTA++W A G C L+GH V L+ AFT S D TIR WD+
Sbjct: 27 GQRLLTGSEDGTARLWSTADGTCCALLQGHESYVTFCQLED--EAAFTCSADCTIRKWDV 84
Query: 902 LSGEPLRVFREHQGSIICLELVNRHVYSGSADRTVKCWLADTGERVRTFAAHRHSVSALK 1081
L+G+ L+VFR H + + + + ++S S DRT + W D G+ R F H + V L
Sbjct: 85 LTGQCLQVFRGHTSIVNRILVADNQLFSSSYDRTARAWSVDRGQVAREFRGHCNCVLTLA 144
Query: 1082 YHAGTC 1099
Y C
Sbjct: 145 YAGAPC 150
Score = 79.7 bits (195), Expect = 6e-15
Identities = 36/38 (94%), Positives = 37/38 (97%)
Frame = +2
Query: 983 SGSADRTVKCWLADTGERVRTFAAHRHSVSALKYHAGT 1096
+GSADRTVKCWLADTGERVRTF AHRHSVSALKYHAGT
Sbjct: 380 AGSADRTVKCWLADTGERVRTFTAHRHSVSALKYHAGT 417
Score = 63.2 bits (152), Expect = 6e-10
Identities = 38/120 (31%), Positives = 50/120 (41%)
Frame = +2
Query: 563 LFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTG 742
L + S DRT + W D G+ R F HR+ V L Y A G L TG
Sbjct: 378 LKAGSADRTVKCWLADTGERVRTFTAHRHSVSALKYHA----------------GTLFTG 421
Query: 743 STDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLR 922
S D A+ + SG + RGH + C + G +T S D +R WD+ P R
Sbjct: 422 SGDARARAFDAQSGALRRVFRGHAFVINC--IQVHGQVLYTASHDGALRLWDVRGLPPPR 479
Score = 56.6 bits (135), Expect = 6e-08
Identities = 37/129 (28%), Positives = 51/129 (39%), Gaps = 10/129 (7%)
Frame = +2
Query: 323 LLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVLTGQC 502
L GS D T + W G+ H V+ + FT S D R +D +G
Sbjct: 378 LKAGSADRTVKCWLADTGERVRTFTAHRHSVSALKYHAGTLFTGSGDARARAFDAQSGAL 437
Query: 503 LQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSV----------DKGQVSREFRGHRNC 652
+VFRGH ++N I V L+++S+D R W V K +SR F C
Sbjct: 438 RRVFRGHAFVINCIQVHGQVLYTASHDGALRLWDVRGLPPPRAAAPKRSLSRLFSNKVGC 497
Query: 653 VLTLAYSAP 679
A P
Sbjct: 498 AAAAAPLQP 506
Score = 55.8 bits (133), Expect = 1e-07
Identities = 35/95 (36%), Positives = 47/95 (49%)
Frame = +2
Query: 731 LVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSG 910
L GS D T K W +G +T H +V L T FTGS DA RA+D SG
Sbjct: 378 LKAGSADRTVKCWLADTGERVRTFTAHRHSVSALKYHAG--TLFTGSGDARARAFDAQSG 435
Query: 911 EPLRVFREHQGSIICLELVNRHVYSGSADRTVKCW 1015
RVFR H I C+++ + +Y+ S D ++ W
Sbjct: 436 ALRRVFRGHAFVINCIQVHGQVLYTASHDGALRLW 470
>ref|NP_001069717.1| F-box/WD repeat-containing protein 7 [Bos taurus].
Length = 627
Score = 145 bits (365), Expect = 1e-34
Identities = 83/261 (31%), Positives = 127/261 (48%), Gaps = 3/261 (1%)
Frame = +2
Query: 314 GQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVLT 493
G R+++GS+D T ++WS G+C L GH V Q+ D + S D T++ W+ T
Sbjct: 311 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAET 370
Query: 494 GQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYS 673
G+C+ GHTS V + + ++ S S D T R W ++ GQ GH V + Y
Sbjct: 371 GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD 430
Query: 674 APWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGH 853
G +V+G+ D KVW + C TL+GHT V L D G
Sbjct: 431 ----------------GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GI 472
Query: 854 TAFTGSTDATIRAWDILSGEPLRVFREHQGSIICLELVNRHVYSGSADRTVKCWLADTGE 1033
+GS D +IR WD+ +G + HQ +EL + + SG+AD TVK W TG+
Sbjct: 473 HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQ 532
Query: 1034 RVRTFAA---HRHSVSALKYH 1087
++T H+ +V+ L+++
Sbjct: 533 CLQTLQGPNKHQSAVTCLQFN 553
Score = 142 bits (358), Expect = 8e-34
Identities = 83/265 (31%), Positives = 129/265 (48%), Gaps = 3/265 (1%)
Frame = +2
Query: 257 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED 436
LR H GG+ W S D +++GS D T ++W+ G+C L GH S V L +
Sbjct: 334 LRTLVGHTGGV-WSSQMRDNI-IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE 391
Query: 437 EAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKG 616
+ + S D T+R WD+ TGQCL V GH + V + ++ S +YD + W +
Sbjct: 392 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE 451
Query: 617 QVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQ 796
+GH N V +L + G +V+GS D + +VW V +G C
Sbjct: 452 TCLHTLQGHTNRVYSLQFD----------------GIHVVSGSLDTSIRVWDVETGNCIH 495
Query: 797 TLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFR---EHQGSIICLELV 967
TL GH L ++ + +G+ D+T++ WDI +G+ L+ + +HQ ++ CL+
Sbjct: 496 TLTGHQS--LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN 553
Query: 968 NRHVYSGSADRTVKCWLADTGERVR 1042
V + S D TVK W TGE +R
Sbjct: 554 KNFVITSSDDGTVKLWDLKTGEFIR 578
Score = 100 bits (249), Expect = 3e-21
Identities = 61/194 (31%), Positives = 92/194 (47%), Gaps = 1/194 (0%)
Frame = +2
Query: 506 QVFRGHTS-IVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPW 682
+V +GH ++ + N++ S S D T + WS G+ R GH V W
Sbjct: 294 KVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV--------W 345
Query: 683 DLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAF 862
+ ++++GSTD T KVW +G C TL GHT V C+ L
Sbjct: 346 --------SSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVV 395
Query: 863 TGSTDATIRAWDILSGEPLRVFREHQGSIICLELVNRHVYSGSADRTVKCWLADTGERVR 1042
+GS DAT+R WDI +G+ L V H ++ C++ R V SG+ D VK W +T +
Sbjct: 396 SGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLH 455
Query: 1043 TFAAHRHSVSALKY 1084
T H + V +L++
Sbjct: 456 TLQGHTNRVYSLQF 469
>ref|NP_001157418.1| WD repeat-containing protein 38 [Bos taurus].
Length = 296
Score = 139 bits (351), Expect = 5e-33
Identities = 91/266 (34%), Positives = 124/266 (46%), Gaps = 9/266 (3%)
Frame = +2
Query: 275 HRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTC 454
HRG +N + SPDGQRLLT SEDG W T G+ L+GH+ V FC+ +
Sbjct: 20 HRGEVNSSAFSPDGQRLLTASEDGCVYGWETQSGRLLWRLRGHKGPVRFCRFSPDGRLFA 79
Query: 455 SADC--TIRKWDVLTGQCLQVFRGHTSIVNRILVTNN--QLFSSSYDRTARAWSVDKGQV 622
S C TIR WD +CLQV +GH V + +++ QL S +D+ W V GQV
Sbjct: 80 STSCDRTIRLWDATDAKCLQVLKGHQRSVETVSFSHDSKQLASGGWDKRVMLWEVQSGQV 139
Query: 623 SREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVAS---GCCH 793
R F GHR+ V + ++ P + C L TGS D T ++W + + G H
Sbjct: 140 LRHFVGHRDSVQSSDFA-----PSSDC---------LATGSWDSTIRMWDLRAGTPGIFH 185
Query: 794 QTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQGSI--ICLELV 967
Q L GH G + CL G A +GS D TI W + L + H + I
Sbjct: 186 QELEGHRGNISCLCYSPSGLLA-SGSWDKTIHIWKPSTRSLLIQLKGHITWVKSIAFSPD 244
Query: 968 NRHVYSGSADRTVKCWLADTGERVRT 1045
+ + S VK W +TG+ T
Sbjct: 245 GQQLASAGYSHMVKVWDCNTGKCTET 270
Score = 65.5 bits (158), Expect = 1e-10
Identities = 52/213 (24%), Positives = 81/213 (38%), Gaps = 6/213 (2%)
Frame = +2
Query: 257 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQL-- 430
L+V H+ + +S S D ++L +G D LW GQ GH V
Sbjct: 98 LQVLKGHQRSVETVSFSHDSKQLASGGWDKRVMLWEVQSGQVLRHFVGHRDSVQSSDFAP 157
Query: 431 EDEAAFTCSADCTIRKWDVLTGQ---CLQVFRGHTSIVNRILVTNNQLFSS-SYDRTARA 598
+ T S D TIR WD+ G Q GH ++ + + + L +S S+D+T
Sbjct: 158 SSDCLATGSWDSTIRMWDLRAGTPGIFHQELEGHRGNISCLCYSPSGLLASGSWDKTIHI 217
Query: 599 WSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVA 778
W + + +GH V ++A+S G L + KVW
Sbjct: 218 WKPSTRSLLIQLKGHITWVKSIAFSPD--------------GQQLASAGYSHMVKVWDCN 263
Query: 779 SGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTD 877
+G C +TL+G G +G+ D
Sbjct: 264 TGKCTETLKGVLNVAHACAFMPDGKLLVSGAVD 296
>ref|NP_001069398.1| WD repeat-containing protein 69 [Bos taurus].
Length = 415
Score = 119 bits (298), Expect = 7e-27
Identities = 75/271 (27%), Positives = 124/271 (45%), Gaps = 7/271 (2%)
Frame = +2
Query: 296 LSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYV---TFCQLEDEAAFTCSADC 466
++L+ G +TGS D T +LW TA G+ L+GH + V F + T S D
Sbjct: 98 VALNKSGSCFITGSYDRTCKLWDTASGEELHTLEGHRNVVYAIAFNNPYGDKIATGSFDK 157
Query: 467 TIRKWDVLTGQCLQVFRGHTSIVNRILVT--NNQLFSSSYDRTARAWSVDKGQVSREFRG 640
T + W V TG+C FRGHT+ + + + + + S D TA+ W + G+ G
Sbjct: 158 TCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQSGEEVFTLTG 217
Query: 641 HRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGA 820
H +++L+++ +G ++TGS D T VW+ +G TL GH
Sbjct: 218 HSAEIISLSFN--------------TSGNRIITGSFDHTVTVWEADTGRKVYTLIGHCAE 263
Query: 821 VLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQGSII--CLELVNRHVYSGSA 994
+ V + TGS D T + WD ++G+ + H I+ C + + + + SA
Sbjct: 264 ISSAVFNWDCSLILTGSMDKTCKLWDAVNGKCVATLTGHDDEILDSCFDYTGKLIATASA 323
Query: 995 DRTVKCWLADTGERVRTFAAHRHSVSALKYH 1087
D T + + A T E V H +S + ++
Sbjct: 324 DGTARIFSAATRECVTKLEGHEGEISKISFN 354
Score = 117 bits (293), Expect = 3e-26
Identities = 70/267 (26%), Positives = 120/267 (44%), Gaps = 6/267 (2%)
Frame = +2
Query: 305 SPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAF--TCSADCTIRK 478
+P G ++ TGS D T +LWS G+C +GH + + ++ T S D T +
Sbjct: 144 NPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKL 203
Query: 479 WDVLTGQCLQVFRGHTSIVNRIL--VTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNC 652
WD+ +G+ + GH++ + + + N++ + S+D T W D G+ GH
Sbjct: 204 WDIQSGEEVFTLTGHSAEIISLSFNTSGNRIITGSFDHTVTVWEADTGRKVYTLIGHCAE 263
Query: 653 VLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCL 832
+ + ++ WD L++TGS D T K+W +G C TL GH +L
Sbjct: 264 ISSAVFN--WDC------------SLILTGSMDKTCKLWDAVNGKCVATLTGHDDEILDS 309
Query: 833 VLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQGSI--ICLELVNRHVYSGSADRTV 1006
D G T S D T R + + E + H+G I I + +GS+D+T
Sbjct: 310 CFDYTGKLIATASADGTARIFSAATRECVTKLEGHEGEISKISFNPQGNRLLTGSSDKTA 369
Query: 1007 KCWLADTGERVRTFAAHRHSVSALKYH 1087
+ W A TG+ ++ H + + ++
Sbjct: 370 RIWDAQTGQCLQVLEGHTDEIFSCAFN 396
Score = 117 bits (292), Expect = 3e-26
Identities = 64/198 (32%), Positives = 92/198 (46%), Gaps = 4/198 (2%)
Frame = +2
Query: 506 QVFRGHTSIVNRILVTNNQ--LFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAP 679
+V R H + + + + + SYDRT + W G+ GHRN V +A++ P
Sbjct: 86 KVLRAHILPLTNVALNKSGSCFITGSYDRTCKLWDTASGEELHTLEGHRNVVYAIAFNNP 145
Query: 680 WDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTA 859
+ G + TGS D T K+W V +G C+ T RGHT ++CL +
Sbjct: 146 Y-------------GDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTLV 192
Query: 860 FTGSTDATIRAWDILSGEPLRVFREHQGSIICLEL--VNRHVYSGSADRTVKCWLADTGE 1033
TGS D T + WDI SGE + H II L + +GS D TV W ADTG
Sbjct: 193 ATGSMDTTAKLWDIQSGEEVFTLTGHSAEIISLSFNTSGNRIITGSFDHTVTVWEADTGR 252
Query: 1034 RVRTFAAHRHSVSALKYH 1087
+V T H +S+ ++
Sbjct: 253 KVYTLIGHCAEISSAVFN 270
Score = 101 bits (252), Expect = 2e-21
Identities = 67/253 (26%), Positives = 106/253 (41%), Gaps = 6/253 (2%)
Frame = +2
Query: 275 HRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEA--AF 448
H I LS +P + TGS D TA+LW G+ L GH + +
Sbjct: 176 HTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQSGEEVFTLTGHSAEIISLSFNTSGNRII 235
Query: 449 TCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVT--NNQLFSSSYDRTARAWSVDKGQV 622
T S D T+ W+ TG+ + GH + ++ + + + + S D+T + W G+
Sbjct: 236 TGSFDHTVTVWEADTGRKVYTLIGHCAEISSAVFNWDCSLILTGSMDKTCKLWDAVNGKC 295
Query: 623 SREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTL 802
GH + +L + G L+ T S DGTA+++ A+ C L
Sbjct: 296 VATLTGHDDEILDSCFD--------------YTGKLIATASADGTARIFSAATRECVTKL 341
Query: 803 RGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQGSII--CLELVNRH 976
GH G + + + G+ TGS+D T R WD +G+ L+V H I
Sbjct: 342 EGHEGEISKISFNPQGNRLLTGSSDKTARIWDAQTGQCLQVLEGHTDEIFSCAFNYKGDI 401
Query: 977 VYSGSADRTVKCW 1015
+ +GS D T + W
Sbjct: 402 IITGSKDNTCRIW 414
Score = 83.2 bits (204), Expect = 6e-16
Identities = 50/174 (28%), Positives = 81/174 (46%), Gaps = 5/174 (2%)
Frame = +2
Query: 266 CADHRGGI-NWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYV--TFCQLED 436
CA+ + NW D +LTGS D T +LW +G+C A L GH+ + +
Sbjct: 261 CAEISSAVFNW-----DCSLILTGSMDKTCKLWDAVNGKCVATLTGHDDEILDSCFDYTG 315
Query: 437 EAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVT--NNQLFSSSYDRTARAWSVD 610
+ T SAD T R + T +C+ GH +++I N+L + S D+TAR W
Sbjct: 316 KLIATASADGTARIFSAATRECVTKLEGHEGEISKISFNPQGNRLLTGSSDKTARIWDAQ 375
Query: 611 KGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQ 772
GQ + GH + + + A++ G +++TGS D T ++W+
Sbjct: 376 TGQCLQVLEGHTDEIFSCAFN--------------YKGDIIITGSKDNTCRIWR 415
>ref|NP_777088.1| platelet-activating factor acetylhydrolase IB subunit alpha [Bos
taurus].
Length = 410
Score = 117 bits (293), Expect = 3e-26
Identities = 76/266 (28%), Positives = 123/266 (46%), Gaps = 14/266 (5%)
Frame = +2
Query: 260 RVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQL--E 433
R H + +S G+ L + S D T +LW +C + GH+ V+ +
Sbjct: 144 RTLKGHTDSVEDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPN 203
Query: 434 DEAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQ----LFSSSYDRTARAW 601
+ + S D TI+ W+V TG C++ F GH V +V NQ + S S D+T R W
Sbjct: 204 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR--MVRPNQDGTLIASCSNDQTVRVW 261
Query: 602 SVDKGQVSREFRGHRNCVLTLA------YSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAK 763
V + E R H + V ++ YS+ + G+ + G L++GS D T K
Sbjct: 262 VVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 321
Query: 764 VWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQG 943
+W V++G C TL GH V ++ + G + + D T+R WD + ++ H+
Sbjct: 322 MWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH 381
Query: 944 SIICLEL--VNRHVYSGSADRTVKCW 1015
+ L+ +V +GS D+TVK W
Sbjct: 382 FVTSLDFHKTAPYVVTGSVDQTVKVW 407
Score = 109 bits (272), Expect = 7e-24
Identities = 77/297 (25%), Positives = 121/297 (40%), Gaps = 26/297 (8%)
Frame = +2
Query: 275 HRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAF-- 448
HR + + P +++ SED T ++W G L+GH V +
Sbjct: 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVEDISFDHSGKLLA 166
Query: 449 TCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNN--QLFSSSYDRTARAWSVDKGQV 622
+CSAD TI+ WD +C++ GH V+ + + N + S+S D+T + W V G
Sbjct: 167 SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYC 226
Query: 623 SREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTL 802
+ F GHR V V G L+ + S D T +VW VA+ C L
Sbjct: 227 VKTFTGHREWVRM--------------VRPNQDGTLIASCSNDQTVRVWVVATKECKAEL 272
Query: 803 RGHTGAVLCLVL--------------------DTPGHTAFTGSTDATIRAWDILSGEPLR 922
R H V C+ PG +GS D TI+ WD+ +G L
Sbjct: 273 REHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM 332
Query: 923 VFREHQGSI--ICLELVNRHVYSGSADRTVKCWLADTGERVRTFAAHRHSVSALKYH 1087
H + + + + S + D+T++ W ++T AH H V++L +H
Sbjct: 333 TLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH 389
Score = 90.5 bits (223), Expect = 3e-18
Identities = 72/260 (27%), Positives = 106/260 (40%), Gaps = 26/260 (10%)
Frame = +2
Query: 392 LQGHESYVTFCQLEDEAAFTCSA--DCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQ- 562
L GH S VT + SA D TI+ WD TG + +GHT V I ++
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVEDISFDHSGK 163
Query: 563 -LFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVT 739
L S S D T + W + R GH + V ++A +P G +V+
Sbjct: 164 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAI-----MPN---------GDHIVS 209
Query: 740 GSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPL 919
S D T K+W+V +G C +T GH V + + G + S D T+R W + + E
Sbjct: 210 ASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK 269
Query: 920 RVFREHQGSIICLELVNRHVYS----------------------GSADRTVKCWLADTGE 1033
REH+ + C+ YS GS D+T+K W TG
Sbjct: 270 AELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 329
Query: 1034 RVRTFAAHRHSVSALKYHAG 1093
+ T H + V + +H+G
Sbjct: 330 CLMTLVGHDNWVRGVLFHSG 349
>ref|NP_001076944.1| F-box/WD repeat-containing protein 1A [Bos taurus].
Length = 569
Score = 115 bits (289), Expect = 8e-26
Identities = 70/241 (29%), Positives = 108/241 (44%), Gaps = 3/241 (1%)
Frame = +2
Query: 302 LSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKW 481
L D Q++++G D T ++W + +C +L GH V Q ++ T S+D T+R W
Sbjct: 273 LQYDDQKIVSGLRDNTIKIWDKSTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVW 332
Query: 482 DVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKG---QVSREFRGHRNC 652
DV TG+ L H V + N + + S DR+ W + + R GHR
Sbjct: 333 DVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA 392
Query: 653 VLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCL 832
V + + + +V+ S D T KVW ++ +TL GH + C
Sbjct: 393 VNVVDFDDKY----------------IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC- 435
Query: 833 VLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQGSIICLELVNRHVYSGSADRTVKC 1012
L +GS+D TIR WDI G LRV H+ + C+ N+ + SG+ D +K
Sbjct: 436 -LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKV 494
Query: 1013 W 1015
W
Sbjct: 495 W 495
Score = 108 bits (270), Expect = 1e-23
Identities = 72/264 (27%), Positives = 115/264 (43%), Gaps = 12/264 (4%)
Frame = +2
Query: 260 RVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDE 439
R+ H G + L L D + ++TGS D T R+W G+ L H V + +
Sbjct: 301 RILTGHTGSV--LCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG 358
Query: 440 AAFTCSADCTIRKWDVLTGQCL---QVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVD 610
TCS D +I WD+ + + +V GH + VN + + + S+S DRT + W+
Sbjct: 359 MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTS 418
Query: 611 KGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCC 790
+ R GH+ + L Y L+V+GS+D T ++W + G C
Sbjct: 419 TCEFVRTLNGHKRGIACLQY----------------RDRLVVSGSSDNTIRLWDIECGAC 462
Query: 791 HQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSG-EP--------LRVFREHQG 943
+ L GH V C+ D +G+ D I+ WD+++ +P LR EH G
Sbjct: 463 LRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG 520
Query: 944 SIICLELVNRHVYSGSADRTVKCW 1015
+ L+ + S S D T+ W
Sbjct: 521 RVFRLQFDEFQIVSSSHDDTILIW 544
Score = 95.5 bits (236), Expect = 1e-19
Identities = 63/223 (28%), Positives = 100/223 (44%), Gaps = 3/223 (1%)
Frame = +2
Query: 425 QLEDEAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWS 604
Q +D+ + D TI+ WD T +C ++ GHT V + + + S D T R W
Sbjct: 274 QYDDQKIVSGLRDNTIKIWDKSTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWD 333
Query: 605 VDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASG 784
V+ G++ H VL L ++ G++VT S D + VW +AS
Sbjct: 334 VNTGEMLNTLIHHCEAVLHLRFN----------------NGMMVTCSKDRSIAVWDMASP 377
Query: 785 C---CHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQGSIIC 955
+ L GH AV V+D + S D TI+ W+ + E +R H+ I C
Sbjct: 378 TDITLRRVLVGHRAAVN--VVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC 435
Query: 956 LELVNRHVYSGSADRTVKCWLADTGERVRTFAAHRHSVSALKY 1084
L+ +R V SGS+D T++ W + G +R H V +++
Sbjct: 436 LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF 478
Score = 61.2 bits (147), Expect = 2e-09
Identities = 35/103 (33%), Positives = 54/103 (52%)
Frame = +2
Query: 785 CCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQGSIICLEL 964
C +T +G V CL D +G D TI+ WD + E R+ H GS++CL+
Sbjct: 262 CRSETSKG----VYCLQYDD--QKIVSGLRDNTIKIWDKSTLECKRILTGHTGSVLCLQY 315
Query: 965 VNRHVYSGSADRTVKCWLADTGERVRTFAAHRHSVSALKYHAG 1093
R + +GS+D TV+ W +TGE + T H +V L+++ G
Sbjct: 316 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG 358
Score = 55.5 bits (132), Expect = 1e-07
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 9/124 (7%)
Frame = +2
Query: 257 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED 436
+R H+ GI L + +++GS D T RLW G C +L+GHE V + ++
Sbjct: 423 VRTLNGHKRGIACLQYRD--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN 480
Query: 437 EAAFTCSADCTIRKWDVLTG---------QCLQVFRGHTSIVNRILVTNNQLFSSSYDRT 589
+ + + D I+ WD++ CL+ H+ V R+ Q+ SSS+D T
Sbjct: 481 KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDT 540
Query: 590 ARAW 601
W
Sbjct: 541 ILIW 544
>ref|XP_002696296.1| PREDICTED: F-box and WD repeat domain containing 11 [Bos taurus].
Length = 542
Score = 114 bits (285), Expect = 2e-25
Identities = 68/241 (28%), Positives = 108/241 (44%), Gaps = 3/241 (1%)
Frame = +2
Query: 302 LSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKW 481
L D +++++G D + ++W +C +L GH V Q ++ T S+D T+R W
Sbjct: 246 LQYDDEKIISGLRDNSIKIWDKTSLECLKVLTGHTGSVLCLQYDERVIVTGSSDSTVRVW 305
Query: 482 DVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKG---QVSREFRGHRNC 652
DV TG+ L H V + +N + + S DR+ W + + R GHR
Sbjct: 306 DVNTGEVLNTLIHHNEAVLHLRFSNGLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAA 365
Query: 653 VLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCL 832
V + + + +V+ S D T KVW ++ +TL GH + C
Sbjct: 366 VNVVDFDDKY----------------IVSASGDRTIKVWSTSTCEFVRTLNGHKRGIAC- 408
Query: 833 VLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQGSIICLELVNRHVYSGSADRTVKC 1012
L +GS+D TIR WDI G LRV H+ + C+ N+ + SG+ D +K
Sbjct: 409 -LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKV 467
Query: 1013 W 1015
W
Sbjct: 468 W 468
Score = 111 bits (277), Expect = 2e-24
Identities = 74/265 (27%), Positives = 115/265 (43%), Gaps = 12/265 (4%)
Frame = +2
Query: 257 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED 436
L+V H G + L L D + ++TGS D T R+W G+ L H V + +
Sbjct: 273 LKVLTGHTGSV--LCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHLRFSN 330
Query: 437 EAAFTCSADCTIRKWDVLTGQCL---QVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSV 607
TCS D +I WD+ + + +V GH + VN + + + S+S DRT + WS
Sbjct: 331 GLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWST 390
Query: 608 DKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGC 787
+ R GH+ + L Y L+V+GS+D T ++W + G
Sbjct: 391 STCEFVRTLNGHKRGIACLQY----------------RDRLVVSGSSDNTIRLWDIECGA 434
Query: 788 CHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSG-EP--------LRVFREHQ 940
C + L GH V C+ D +G+ D I+ WD+ + +P LR EH
Sbjct: 435 CLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHS 492
Query: 941 GSIICLELVNRHVYSGSADRTVKCW 1015
G + L+ + S S D T+ W
Sbjct: 493 GRVFRLQFDEFQIISSSHDDTILIW 517
Score = 101 bits (251), Expect = 2e-21
Identities = 67/223 (30%), Positives = 100/223 (44%), Gaps = 3/223 (1%)
Frame = +2
Query: 425 QLEDEAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWS 604
Q +DE + D +I+ WD + +CL+V GHT V + + + S D T R W
Sbjct: 247 QYDDEKIISGLRDNSIKIWDKTSLECLKVLTGHTGSVLCLQYDERVIVTGSSDSTVRVWD 306
Query: 605 VDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASG 784
V+ G+V H VL L +S GL+VT S D + VW +AS
Sbjct: 307 VNTGEVLNTLIHHNEAVLHLRFS----------------NGLMVTCSKDRSIAVWDMASA 350
Query: 785 C---CHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQGSIIC 955
+ L GH AV V+D + S D TI+ W + E +R H+ I C
Sbjct: 351 TDITLRRVLVGHRAAVN--VVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIAC 408
Query: 956 LELVNRHVYSGSADRTVKCWLADTGERVRTFAAHRHSVSALKY 1084
L+ +R V SGS+D T++ W + G +R H V +++
Sbjct: 409 LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF 451
Score = 61.6 bits (148), Expect = 2e-09
Identities = 33/91 (36%), Positives = 49/91 (53%)
Frame = +2
Query: 821 VLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQGSIICLELVNRHVYSGSADR 1000
V CL D +G D +I+ WD S E L+V H GS++CL+ R + +GS+D
Sbjct: 243 VYCLQYDD--EKIISGLRDNSIKIWDKTSLECLKVLTGHTGSVLCLQYDERVIVTGSSDS 300
Query: 1001 TVKCWLADTGERVRTFAAHRHSVSALKYHAG 1093
TV+ W +TGE + T H +V L++ G
Sbjct: 301 TVRVWDVNTGEVLNTLIHHNEAVLHLRFSNG 331
>ref|XP_612428.5| PREDICTED: F-box and WD repeat domain containing 11 isoform 1 [Bos
taurus].
Length = 542
Score = 114 bits (285), Expect = 2e-25
Identities = 68/241 (28%), Positives = 108/241 (44%), Gaps = 3/241 (1%)
Frame = +2
Query: 302 LSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKW 481
L D +++++G D + ++W +C +L GH V Q ++ T S+D T+R W
Sbjct: 246 LQYDDEKIISGLRDNSIKIWDKTSLECLKVLTGHTGSVLCLQYDERVIVTGSSDSTVRVW 305
Query: 482 DVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKG---QVSREFRGHRNC 652
DV TG+ L H V + +N + + S DR+ W + + R GHR
Sbjct: 306 DVNTGEVLNTLIHHNEAVLHLRFSNGLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAA 365
Query: 653 VLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCL 832
V + + + +V+ S D T KVW ++ +TL GH + C
Sbjct: 366 VNVVDFDDKY----------------IVSASGDRTIKVWSTSTCEFVRTLNGHKRGIAC- 408
Query: 833 VLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQGSIICLELVNRHVYSGSADRTVKC 1012
L +GS+D TIR WDI G LRV H+ + C+ N+ + SG+ D +K
Sbjct: 409 -LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKV 467
Query: 1013 W 1015
W
Sbjct: 468 W 468
Score = 111 bits (277), Expect = 2e-24
Identities = 74/265 (27%), Positives = 115/265 (43%), Gaps = 12/265 (4%)
Frame = +2
Query: 257 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED 436
L+V H G + L L D + ++TGS D T R+W G+ L H V + +
Sbjct: 273 LKVLTGHTGSV--LCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHLRFSN 330
Query: 437 EAAFTCSADCTIRKWDVLTGQCL---QVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSV 607
TCS D +I WD+ + + +V GH + VN + + + S+S DRT + WS
Sbjct: 331 GLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWST 390
Query: 608 DKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGC 787
+ R GH+ + L Y L+V+GS+D T ++W + G
Sbjct: 391 STCEFVRTLNGHKRGIACLQY----------------RDRLVVSGSSDNTIRLWDIECGA 434
Query: 788 CHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSG-EP--------LRVFREHQ 940
C + L GH V C+ D +G+ D I+ WD+ + +P LR EH
Sbjct: 435 CLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHS 492
Query: 941 GSIICLELVNRHVYSGSADRTVKCW 1015
G + L+ + S S D T+ W
Sbjct: 493 GRVFRLQFDEFQIISSSHDDTILIW 517
Score = 101 bits (251), Expect = 2e-21
Identities = 67/223 (30%), Positives = 100/223 (44%), Gaps = 3/223 (1%)
Frame = +2
Query: 425 QLEDEAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWS 604
Q +DE + D +I+ WD + +CL+V GHT V + + + S D T R W
Sbjct: 247 QYDDEKIISGLRDNSIKIWDKTSLECLKVLTGHTGSVLCLQYDERVIVTGSSDSTVRVWD 306
Query: 605 VDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASG 784
V+ G+V H VL L +S GL+VT S D + VW +AS
Sbjct: 307 VNTGEVLNTLIHHNEAVLHLRFS----------------NGLMVTCSKDRSIAVWDMASA 350
Query: 785 C---CHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQGSIIC 955
+ L GH AV V+D + S D TI+ W + E +R H+ I C
Sbjct: 351 TDITLRRVLVGHRAAVN--VVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIAC 408
Query: 956 LELVNRHVYSGSADRTVKCWLADTGERVRTFAAHRHSVSALKY 1084
L+ +R V SGS+D T++ W + G +R H V +++
Sbjct: 409 LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF 451
Score = 61.6 bits (148), Expect = 2e-09
Identities = 33/91 (36%), Positives = 49/91 (53%)
Frame = +2
Query: 821 VLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQGSIICLELVNRHVYSGSADR 1000
V CL D +G D +I+ WD S E L+V H GS++CL+ R + +GS+D
Sbjct: 243 VYCLQYDD--EKIISGLRDNSIKIWDKTSLECLKVLTGHTGSVLCLQYDERVIVTGSSDS 300
Query: 1001 TVKCWLADTGERVRTFAAHRHSVSALKYHAG 1093
TV+ W +TGE + T H +V L++ G
Sbjct: 301 TVRVWDVNTGEVLNTLIHHNEAVLHLRFSNG 331
>ref|NP_001178407.1| transcription initiation factor TFIID subunit 5 [Bos taurus].
Length = 800
Score = 111 bits (278), Expect = 1e-24
Identities = 74/220 (33%), Positives = 96/220 (43%), Gaps = 4/220 (1%)
Frame = +2
Query: 251 SALRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQL 430
S L++ H G + S SPD LL+ SEDGT RLWS C +GH V Q
Sbjct: 534 SELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQF 593
Query: 431 EDEAAFTCSA--DCTIRKWDVLTGQCLQVFRGHTSIVN--RILVTNNQLFSSSYDRTARA 598
+ S D R W Q L++F GH + VN R +N + + S DRT R
Sbjct: 594 SPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRL 653
Query: 599 WSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVA 778
W V G R F GH+ + +L +S G L TG+TDG +W +
Sbjct: 654 WDVLNGNCVRIFTGHKGPIHSLTFSPN--------------GRFLATGATDGRVLLWDIG 699
Query: 779 SGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWD 898
G L+GHT V L G +GS D T+R WD
Sbjct: 700 HGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWD 739
Score = 86.7 bits (213), Expect = 5e-17
Identities = 63/233 (27%), Positives = 90/233 (38%), Gaps = 6/233 (2%)
Frame = +2
Query: 335 SEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSA--DCTIRKWDVLTGQCLQ 508
S+D R+ +L GH V + + S+ D T+R W + T CL
Sbjct: 520 SDDVLERIMDEKTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLV 579
Query: 509 VFRGHTSIV--NRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPW 682
++GH V + S +DR AR W+ D Q R F GH
Sbjct: 580 GYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGH------------- 626
Query: 683 DLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAF 862
L C + TGS D T ++W V +G C + GH G + L G
Sbjct: 627 -LADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLA 685
Query: 863 TGSTDATIRAWDILSGEPLRVFREHQGSIICLELV--NRHVYSGSADRTVKCW 1015
TG+TD + WDI G + + H ++ L + SGS D TV+ W
Sbjct: 686 TGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLW 738
Score = 65.1 bits (157), Expect = 2e-10
Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Frame = +2
Query: 731 LVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSG 910
L++ S DGT ++W + + C +GH V G+ +G D R W
Sbjct: 558 LLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHY 617
Query: 911 EPLRVFREHQGSIICLELV--NRHVYSGSADRTVKCWLADTGERVRTFAAHRHSVSALKY 1084
+PLR+F H + C + +V +GSADRTV+ W G VR F H+ + +L +
Sbjct: 618 QPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTF 677
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 48,813,554
Number of extensions: 1623948
Number of successful extensions: 10302
Number of sequences better than 1.0e-05: 124
Number of HSP's gapped: 8770
Number of HSP's successfully gapped: 351
Length of query: 495
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 389
Effective length of database: 14,174,046
Effective search space: 5513703894
Effective search space used: 5513703894
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVR01_0011_G02
(1487 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003360116.1| PREDICTED: vegetative incompatibility protei... 182 3e-46
Alignment gi|XP_003362067.1| PREDICTED: f-box/WD repeat-containing protei... 142 5e-34
Alignment gi|XP_003362066.1| PREDICTED: f-box/WD repeat-containing protei... 142 5e-34
Alignment gi|XP_003362065.1| PREDICTED: f-box/WD repeat-containing protei... 142 5e-34
Alignment gi|XP_003353713.1| PREDICTED: WD repeat-containing protein 38-l... 138 7e-33
Alignment gi|XP_001927805.1| PREDICTED: WD repeat-containing protein 38-l... 138 7e-33
Alignment gi|NP_999415.1| platelet-activating factor acetylhydrolase IB s... 117 2e-26
Alignment gi|XP_001924863.3| PREDICTED: f-box/WD repeat-containing protei... 115 5e-26
Alignment gi|XP_001929370.2| PREDICTED: transcription initiation factor T... 111 9e-25
Alignment gi|XP_003353752.1| PREDICTED: WD repeat-containing protein 5 [S... 110 3e-24
>ref|XP_003360116.1| PREDICTED: vegetative incompatibility protein HET-E-1-like [Sus
scrofa].
Length = 361
Score = 182 bits (463), Expect = 3e-46
Identities = 93/133 (69%), Positives = 94/133 (70%)
Frame = +2
Query: 2 TARGYEGAQFXXXXXXXXXXXXIWVFQRAPQDASAQXXXXXXXXXXXXXASGSCCRVGAG 181
TARGYEGAQF IWVFQRAP+DASAQ A GSCCRVGAG
Sbjct: 54 TARGYEGAQFPGSPESPTPGEEIWVFQRAPRDASAQEPGAGAPRWPRAAALGSCCRVGAG 113
Query: 182 APLPSGAQPAXXXXXXXXXXXXXSALRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLW 361
APLPSGAQPA SALRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLW
Sbjct: 114 APLPSGAQPAPGPRPTSRMGGGGSALRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLW 173
Query: 362 STADGQCCALLQG 400
STADGQCCALLQG
Sbjct: 174 STADGQCCALLQG 186
>ref|XP_003362067.1| PREDICTED: f-box/WD repeat-containing protein 7 isoform 3 [Sus
scrofa].
Length = 589
Score = 142 bits (358), Expect = 5e-34
Identities = 83/265 (31%), Positives = 129/265 (48%), Gaps = 3/265 (1%)
Frame = +2
Query: 257 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED 436
LR H GG+ W S D +++GS D T ++W+ G+C L GH S V L +
Sbjct: 296 LRTLVGHTGGV-WSSQMRDNI-IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE 353
Query: 437 EAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKG 616
+ + S D T+R WD+ TGQCL V GH + V + ++ S +YD + W +
Sbjct: 354 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE 413
Query: 617 QVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQ 796
+GH N V +L + G +V+GS D + +VW V +G C
Sbjct: 414 TCLHTLQGHTNRVYSLQFD----------------GIHVVSGSLDTSIRVWDVETGNCIH 457
Query: 797 TLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFR---EHQGSIICLELV 967
TL GH L ++ + +G+ D+T++ WDI +G+ L+ + +HQ ++ CL+
Sbjct: 458 TLTGHQS--LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN 515
Query: 968 NRHVYSGSADRTVKCWLADTGERVR 1042
V + S D TVK W TGE +R
Sbjct: 516 KNFVITSSDDGTVKLWDLKTGEFIR 540
Score = 139 bits (351), Expect = 3e-33
Identities = 81/256 (31%), Positives = 123/256 (48%), Gaps = 3/256 (1%)
Frame = +2
Query: 329 TGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVLTGQCLQ 508
+GS+D T ++WS G+C L GH V Q+ D + S D T++ W+ TG+C+
Sbjct: 278 SGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIH 337
Query: 509 VFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPWDL 688
GHTS V + + ++ S S D T R W ++ GQ GH V + Y
Sbjct: 338 TLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD----- 392
Query: 689 PGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTG 868
G +V+G+ D KVW + C TL+GHT V L D G +G
Sbjct: 393 -----------GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GIHVVSG 439
Query: 869 STDATIRAWDILSGEPLRVFREHQGSIICLELVNRHVYSGSADRTVKCWLADTGERVRTF 1048
S D +IR WD+ +G + HQ +EL + + SG+AD TVK W TG+ ++T
Sbjct: 440 SLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTL 499
Query: 1049 AA---HRHSVSALKYH 1087
H+ +V+ L+++
Sbjct: 500 QGPNKHQSAVTCLQFN 515
>ref|XP_003362066.1| PREDICTED: f-box/WD repeat-containing protein 7 isoform 2 [Sus
scrofa].
Length = 705
Score = 142 bits (358), Expect = 5e-34
Identities = 83/265 (31%), Positives = 129/265 (48%), Gaps = 3/265 (1%)
Frame = +2
Query: 257 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED 436
LR H GG+ W S D +++GS D T ++W+ G+C L GH S V L +
Sbjct: 412 LRTLVGHTGGV-WSSQMRDNI-IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE 469
Query: 437 EAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKG 616
+ + S D T+R WD+ TGQCL V GH + V + ++ S +YD + W +
Sbjct: 470 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE 529
Query: 617 QVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQ 796
+GH N V +L + G +V+GS D + +VW V +G C
Sbjct: 530 TCLHTLQGHTNRVYSLQFD----------------GIHVVSGSLDTSIRVWDVETGNCIH 573
Query: 797 TLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFR---EHQGSIICLELV 967
TL GH L ++ + +G+ D+T++ WDI +G+ L+ + +HQ ++ CL+
Sbjct: 574 TLTGHQS--LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN 631
Query: 968 NRHVYSGSADRTVKCWLADTGERVR 1042
V + S D TVK W TGE +R
Sbjct: 632 KNFVITSSDDGTVKLWDLKTGEFIR 656
Score = 139 bits (351), Expect = 3e-33
Identities = 81/256 (31%), Positives = 123/256 (48%), Gaps = 3/256 (1%)
Frame = +2
Query: 329 TGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVLTGQCLQ 508
+GS+D T ++WS G+C L GH V Q+ D + S D T++ W+ TG+C+
Sbjct: 394 SGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIH 453
Query: 509 VFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPWDL 688
GHTS V + + ++ S S D T R W ++ GQ GH V + Y
Sbjct: 454 TLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD----- 508
Query: 689 PGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTG 868
G +V+G+ D KVW + C TL+GHT V L D G +G
Sbjct: 509 -----------GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GIHVVSG 555
Query: 869 STDATIRAWDILSGEPLRVFREHQGSIICLELVNRHVYSGSADRTVKCWLADTGERVRTF 1048
S D +IR WD+ +G + HQ +EL + + SG+AD TVK W TG+ ++T
Sbjct: 556 SLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTL 615
Query: 1049 AA---HRHSVSALKYH 1087
H+ +V+ L+++
Sbjct: 616 QGPNKHQSAVTCLQFN 631
>ref|XP_003362065.1| PREDICTED: f-box/WD repeat-containing protein 7 isoform 1 [Sus
scrofa].
Length = 627
Score = 142 bits (358), Expect = 5e-34
Identities = 83/265 (31%), Positives = 129/265 (48%), Gaps = 3/265 (1%)
Frame = +2
Query: 257 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED 436
LR H GG+ W S D +++GS D T ++W+ G+C L GH S V L +
Sbjct: 334 LRTLVGHTGGV-WSSQMRDNI-IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE 391
Query: 437 EAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKG 616
+ + S D T+R WD+ TGQCL V GH + V + ++ S +YD + W +
Sbjct: 392 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE 451
Query: 617 QVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQ 796
+GH N V +L + G +V+GS D + +VW V +G C
Sbjct: 452 TCLHTLQGHTNRVYSLQFD----------------GIHVVSGSLDTSIRVWDVETGNCIH 495
Query: 797 TLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFR---EHQGSIICLELV 967
TL GH L ++ + +G+ D+T++ WDI +G+ L+ + +HQ ++ CL+
Sbjct: 496 TLTGHQS--LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN 553
Query: 968 NRHVYSGSADRTVKCWLADTGERVR 1042
V + S D TVK W TGE +R
Sbjct: 554 KNFVITSSDDGTVKLWDLKTGEFIR 578
Score = 139 bits (351), Expect = 3e-33
Identities = 81/256 (31%), Positives = 123/256 (48%), Gaps = 3/256 (1%)
Frame = +2
Query: 329 TGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVLTGQCLQ 508
+GS+D T ++WS G+C L GH V Q+ D + S D T++ W+ TG+C+
Sbjct: 316 SGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIH 375
Query: 509 VFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPWDL 688
GHTS V + + ++ S S D T R W ++ GQ GH V + Y
Sbjct: 376 TLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD----- 430
Query: 689 PGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTG 868
G +V+G+ D KVW + C TL+GHT V L D G +G
Sbjct: 431 -----------GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GIHVVSG 477
Query: 869 STDATIRAWDILSGEPLRVFREHQGSIICLELVNRHVYSGSADRTVKCWLADTGERVRTF 1048
S D +IR WD+ +G + HQ +EL + + SG+AD TVK W TG+ ++T
Sbjct: 478 SLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTL 537
Query: 1049 AA---HRHSVSALKYH 1087
H+ +V+ L+++
Sbjct: 538 QGPNKHQSAVTCLQFN 553
>ref|XP_003353713.1| PREDICTED: WD repeat-containing protein 38-like [Sus scrofa].
Length = 312
Score = 138 bits (348), Expect = 7e-33
Identities = 91/261 (34%), Positives = 121/261 (46%), Gaps = 9/261 (3%)
Frame = +2
Query: 275 HRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAF-- 448
HRG +N + SPDGQRLLT SEDG W T G+ L GH V FC+ +
Sbjct: 20 HRGEVNSSTFSPDGQRLLTASEDGCVYGWETQSGRLLWKLGGHTGPVKFCRFSPDGRLFA 79
Query: 449 TCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVT--NNQLFSSSYDRTARAWSVDKGQV 622
+ S+DCTIR WDV +CLQV +GH V + + + QL S +D+ W V GQV
Sbjct: 80 STSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQV 139
Query: 623 SREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASG---CCH 793
R GHR+ + + ++ P + C L TGS D T ++W + G H
Sbjct: 140 LRHLVGHRDSIQSSDFA-----PSSDC---------LATGSWDSTIRMWDLRGGTGAIFH 185
Query: 794 QTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQGSI--ICLELV 967
Q L GH G + CL G A +GS D TI W + L + H + I
Sbjct: 186 QELEGHRGNISCLCFSAFGLLA-SGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPD 244
Query: 968 NRHVYSGSADRTVKCWLADTG 1030
+ S TVK W +TG
Sbjct: 245 GLQLASAGYSHTVKVWDCNTG 265
>ref|XP_001927805.1| PREDICTED: WD repeat-containing protein 38-like [Sus scrofa].
Length = 312
Score = 138 bits (348), Expect = 7e-33
Identities = 91/261 (34%), Positives = 121/261 (46%), Gaps = 9/261 (3%)
Frame = +2
Query: 275 HRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAF-- 448
HRG +N + SPDGQRLLT SEDG W T G+ L GH V FC+ +
Sbjct: 20 HRGEVNSSTFSPDGQRLLTASEDGCVYGWETQSGRLLWKLGGHTGPVKFCRFSPDGRLFA 79
Query: 449 TCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVT--NNQLFSSSYDRTARAWSVDKGQV 622
+ S+DCTIR WDV +CLQV +GH V + + + QL S +D+ W V GQV
Sbjct: 80 STSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQV 139
Query: 623 SREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASG---CCH 793
R GHR+ + + ++ P + C L TGS D T ++W + G H
Sbjct: 140 LRHLVGHRDSIQSSDFA-----PSSDC---------LATGSWDSTIRMWDLRGGTGAIFH 185
Query: 794 QTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQGSI--ICLELV 967
Q L GH G + CL G A +GS D TI W + L + H + I
Sbjct: 186 QELEGHRGNISCLCFSAFGLLA-SGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPD 244
Query: 968 NRHVYSGSADRTVKCWLADTG 1030
+ S TVK W +TG
Sbjct: 245 GLQLASAGYSHTVKVWDCNTG 265
>ref|NP_999415.1| platelet-activating factor acetylhydrolase IB subunit alpha [Sus
scrofa].
Length = 410
Score = 117 bits (292), Expect = 2e-26
Identities = 77/266 (28%), Positives = 122/266 (45%), Gaps = 14/266 (5%)
Frame = +2
Query: 260 RVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDE 439
R H + +S G+ L + S D T +LW +C + GH+ V+ +
Sbjct: 144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPN 203
Query: 440 AAFTCSA--DCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQ----LFSSSYDRTARAW 601
SA D TI+ W+V TG C++ F GH V +V NQ + S S D+T R W
Sbjct: 204 GDHIVSAARDKTIKMWEVQTGYCVKTFTGHREWVR--MVRPNQDGTLIASCSNDQTVRVW 261
Query: 602 SVDKGQVSREFRGHRNCVLTLA------YSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAK 763
V + E R H + V ++ YS+ + G+ + G L++GS D T K
Sbjct: 262 VVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 321
Query: 764 VWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQG 943
+W V++G C TL GH V ++ + G + + D T+R WD + ++ H+
Sbjct: 322 MWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH 381
Query: 944 SIICLEL--VNRHVYSGSADRTVKCW 1015
+ L+ +V +GS D+TVK W
Sbjct: 382 FVTSLDFHKTAPYVVTGSVDQTVKVW 407
Score = 108 bits (269), Expect = 1e-23
Identities = 76/297 (25%), Positives = 121/297 (40%), Gaps = 26/297 (8%)
Frame = +2
Query: 275 HRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAF-- 448
HR + + P +++ SED T ++W G L+GH V +
Sbjct: 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLA 166
Query: 449 TCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNN--QLFSSSYDRTARAWSVDKGQV 622
+CSAD TI+ WD +C++ GH V+ + + N + S++ D+T + W V G
Sbjct: 167 SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSAARDKTIKMWEVQTGYC 226
Query: 623 SREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTL 802
+ F GHR V V G L+ + S D T +VW VA+ C L
Sbjct: 227 VKTFTGHREWVRM--------------VRPNQDGTLIASCSNDQTVRVWVVATKECKAEL 272
Query: 803 RGHTGAVLCLVL--------------------DTPGHTAFTGSTDATIRAWDILSGEPLR 922
R H V C+ PG +GS D TI+ WD+ +G L
Sbjct: 273 REHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM 332
Query: 923 VFREHQGSI--ICLELVNRHVYSGSADRTVKCWLADTGERVRTFAAHRHSVSALKYH 1087
H + + + + S + D+T++ W ++T AH H V++L +H
Sbjct: 333 TLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH 389
Score = 89.4 bits (220), Expect = 5e-18
Identities = 71/260 (27%), Positives = 105/260 (40%), Gaps = 26/260 (10%)
Frame = +2
Query: 392 LQGHESYVTFCQLEDEAAFTCSA--DCTIRKWDVLTGQCLQVFRGHTSIVNRILV--TNN 559
L GH S VT + SA D TI+ WD TG + +GHT V I +
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 163
Query: 560 QLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVT 739
L S S D T + W + R GH + V ++A +P G +V+
Sbjct: 164 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAI-----MPN---------GDHIVS 209
Query: 740 GSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPL 919
+ D T K+W+V +G C +T GH V + + G + S D T+R W + + E
Sbjct: 210 AARDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK 269
Query: 920 RVFREHQGSIICLELVNRHVY----------------------SGSADRTVKCWLADTGE 1033
REH+ + C+ Y SGS D+T+K W TG
Sbjct: 270 AELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 329
Query: 1034 RVRTFAAHRHSVSALKYHAG 1093
+ T H + V + +H+G
Sbjct: 330 CLMTLVGHDNWVRGVLFHSG 349
>ref|XP_001924863.3| PREDICTED: f-box/WD repeat-containing protein 1A, partial [Sus
scrofa].
Length = 497
Score = 115 bits (289), Expect = 5e-26
Identities = 70/241 (29%), Positives = 108/241 (44%), Gaps = 3/241 (1%)
Frame = +2
Query: 302 LSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKW 481
L D Q++++G D T ++W + +C +L GH V Q ++ T S+D T+R W
Sbjct: 201 LQYDDQKIVSGLRDNTIKIWDKSTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVW 260
Query: 482 DVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKG---QVSREFRGHRNC 652
DV TG+ L H V + N + + S DR+ W + + R GHR
Sbjct: 261 DVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA 320
Query: 653 VLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCL 832
V + + + +V+ S D T KVW ++ +TL GH + C
Sbjct: 321 VNVVDFDDKY----------------IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC- 363
Query: 833 VLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQGSIICLELVNRHVYSGSADRTVKC 1012
L +GS+D TIR WDI G LRV H+ + C+ N+ + SG+ D +K
Sbjct: 364 -LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKV 422
Query: 1013 W 1015
W
Sbjct: 423 W 423
Score = 108 bits (271), Expect = 6e-24
Identities = 72/264 (27%), Positives = 115/264 (43%), Gaps = 12/264 (4%)
Frame = +2
Query: 260 RVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDE 439
R+ H G + L L D + ++TGS D T R+W G+ L H V + +
Sbjct: 229 RILTGHTGSV--LCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG 286
Query: 440 AAFTCSADCTIRKWDVLTGQCL---QVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVD 610
TCS D +I WD+ + + +V GH + VN + + + S+S DRT + W+
Sbjct: 287 MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTS 346
Query: 611 KGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCC 790
+ R GH+ + L Y L+V+GS+D T ++W + G C
Sbjct: 347 TCEFVRTLNGHKRGIACLQY----------------RDRLVVSGSSDNTIRLWDIECGAC 390
Query: 791 HQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSG-EP--------LRVFREHQG 943
+ L GH V C+ D +G+ D I+ WD+++ +P LR EH G
Sbjct: 391 LRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLIAALDPRAPAGTLCLRTLVEHSG 448
Query: 944 SIICLELVNRHVYSGSADRTVKCW 1015
+ L+ + S S D T+ W
Sbjct: 449 RVFRLQFDEFQIVSSSHDDTILIW 472
Score = 95.5 bits (236), Expect = 7e-20
Identities = 63/223 (28%), Positives = 100/223 (44%), Gaps = 3/223 (1%)
Frame = +2
Query: 425 QLEDEAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWS 604
Q +D+ + D TI+ WD T +C ++ GHT V + + + S D T R W
Sbjct: 202 QYDDQKIVSGLRDNTIKIWDKSTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWD 261
Query: 605 VDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASG 784
V+ G++ H VL L ++ G++VT S D + VW +AS
Sbjct: 262 VNTGEMLNTLIHHCEAVLHLRFN----------------NGMMVTCSKDRSIAVWDMASP 305
Query: 785 C---CHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQGSIIC 955
+ L GH AV V+D + S D TI+ W+ + E +R H+ I C
Sbjct: 306 TDITLRRVLVGHRAAVN--VVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC 363
Query: 956 LELVNRHVYSGSADRTVKCWLADTGERVRTFAAHRHSVSALKY 1084
L+ +R V SGS+D T++ W + G +R H V +++
Sbjct: 364 LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF 406
Score = 61.2 bits (147), Expect = 1e-09
Identities = 35/103 (33%), Positives = 54/103 (52%)
Frame = +2
Query: 785 CCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQGSIICLEL 964
C +T +G V CL D +G D TI+ WD + E R+ H GS++CL+
Sbjct: 190 CRSETSKG----VYCLQYDD--QKIVSGLRDNTIKIWDKSTLECKRILTGHTGSVLCLQY 243
Query: 965 VNRHVYSGSADRTVKCWLADTGERVRTFAAHRHSVSALKYHAG 1093
R + +GS+D TV+ W +TGE + T H +V L+++ G
Sbjct: 244 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG 286
Score = 55.8 bits (133), Expect = 6e-08
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 9/124 (7%)
Frame = +2
Query: 257 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED 436
+R H+ GI L + +++GS D T RLW G C +L+GHE V + ++
Sbjct: 351 VRTLNGHKRGIACLQYRD--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN 408
Query: 437 EAAFTCSADCTIRKWDVLTG---------QCLQVFRGHTSIVNRILVTNNQLFSSSYDRT 589
+ + + D I+ WD++ CL+ H+ V R+ Q+ SSS+D T
Sbjct: 409 KRIVSGAYDGKIKVWDLIAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDT 468
Query: 590 ARAW 601
W
Sbjct: 469 ILIW 472
>ref|XP_001929370.2| PREDICTED: transcription initiation factor TFIID subunit 5 [Sus
scrofa].
Length = 662
Score = 111 bits (278), Expect = 9e-25
Identities = 74/220 (33%), Positives = 96/220 (43%), Gaps = 4/220 (1%)
Frame = +2
Query: 251 SALRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQL 430
S L++ H G + S SPD LL+ SEDGT RLWS C +GH V Q
Sbjct: 396 SELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQF 455
Query: 431 EDEAAFTCSA--DCTIRKWDVLTGQCLQVFRGHTSIVN--RILVTNNQLFSSSYDRTARA 598
+ S D R W Q L++F GH + VN R +N + + S DRT R
Sbjct: 456 SPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRL 515
Query: 599 WSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVA 778
W V G R F GH+ + +L +S G L TG+TDG +W +
Sbjct: 516 WDVLNGNCVRIFTGHKGPIHSLTFSPN--------------GRFLATGATDGRVLLWDIG 561
Query: 779 SGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWD 898
G L+GHT V L G +GS D T+R WD
Sbjct: 562 HGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWD 601
Score = 86.7 bits (213), Expect = 3e-17
Identities = 63/233 (27%), Positives = 90/233 (38%), Gaps = 6/233 (2%)
Frame = +2
Query: 335 SEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSA--DCTIRKWDVLTGQCLQ 508
S+D R+ +L GH V + + S+ D T+R W + T CL
Sbjct: 382 SDDVLERIMDEKTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLV 441
Query: 509 VFRGHTSIV--NRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPW 682
++GH V + S +DR AR W+ D Q R F GH
Sbjct: 442 GYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGH------------- 488
Query: 683 DLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAF 862
L C + TGS D T ++W V +G C + GH G + L G
Sbjct: 489 -LADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLA 547
Query: 863 TGSTDATIRAWDILSGEPLRVFREHQGSIICLELV--NRHVYSGSADRTVKCW 1015
TG+TD + WDI G + + H ++ L + SGS D TV+ W
Sbjct: 548 TGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLW 600
Score = 65.1 bits (157), Expect = 1e-10
Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Frame = +2
Query: 731 LVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSG 910
L++ S DGT ++W + + C +GH V G+ +G D R W
Sbjct: 420 LLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHY 479
Query: 911 EPLRVFREHQGSIICLELV--NRHVYSGSADRTVKCWLADTGERVRTFAAHRHSVSALKY 1084
+PLR+F H + C + +V +GSADRTV+ W G VR F H+ + +L +
Sbjct: 480 QPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTF 539
>ref|XP_003353752.1| PREDICTED: WD repeat-containing protein 5 [Sus scrofa].
Length = 334
Score = 110 bits (274), Expect = 3e-24
Identities = 72/266 (27%), Positives = 121/266 (45%), Gaps = 11/266 (4%)
Frame = +2
Query: 260 RVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDE 439
+ + H+ GI+ ++ S D L++ S+D T ++W + G+C L+GH +YV C +
Sbjct: 81 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 140
Query: 440 AAFTCSA--DCTIRKWDVLTGQCLQVFRGHTSIVNRILVT--NNQLFSSSYDRTARAWSV 607
+ S D ++R WDV TG+CL+ H+ V+ + + + SSSYD R W
Sbjct: 141 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 200
Query: 608 DKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGC 787
GQ C+ TL D P V+ + G ++ + D T K+W + G
Sbjct: 201 ASGQ----------CLKTLIDD---DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK 247
Query: 788 CHQTLRGHTGAVLCLVLD---TPGHTAFTGSTDATIRAWDILSGEPLRVFREHQGSIICL 958
C +T GH C+ + T G +GS D + W++ + E ++ + H +I
Sbjct: 248 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 307
Query: 959 ELVNRHVYSGSA----DRTVKCWLAD 1024
SA D+T+K W +D
Sbjct: 308 ACHPTENIIASAALENDKTIKLWKSD 333
Score = 108 bits (271), Expect = 6e-24
Identities = 72/283 (25%), Positives = 124/283 (43%), Gaps = 10/283 (3%)
Frame = +2
Query: 269 ADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAF 448
A H ++ + SP+G+ L + S D ++W DG+ + GH+ ++ ++
Sbjct: 42 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL 101
Query: 449 TCSA--DCTIRKWDVLTGQCLQVFRGHTSIV--NRILVTNNQLFSSSYDRTARAWSVDKG 616
SA D T++ WDV +G+CL+ +GH++ V +N + S S+D + R W V G
Sbjct: 102 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 161
Query: 617 QVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQ 796
+ + H + V + ++ G L+V+ S DG ++W ASG C +
Sbjct: 162 KCLKTLPAHSDPVSAVHFNRD--------------GSLIVSSSYDGLCRIWDTASGQCLK 207
Query: 797 TLRGHTGAVLCLVLDTP-GHTAFTGSTDATIRAWDILSGEPLRVFREHQGSIICL----- 958
TL + V +P G + D T++ WD G+ L+ + H+ C+
Sbjct: 208 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFS 267
Query: 959 ELVNRHVYSGSADRTVKCWLADTGERVRTFAAHRHSVSALKYH 1087
+ + SGS D V W T E V+ H V + H
Sbjct: 268 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACH 310
Score = 69.7 bits (169), Expect = 4e-12
Identities = 51/224 (22%), Positives = 91/224 (40%), Gaps = 11/224 (4%)
Frame = +2
Query: 257 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED 436
L+ H + + +P +++GS D + R+W G+C L H V+
Sbjct: 122 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 181
Query: 437 EAAFTCSA--DCTIRKWDVLTGQCLQVF----RGHTSIVNRILVTNNQLFSSSYDRTARA 598
+ + S+ D R WD +GQCL+ S V + + +++ D T +
Sbjct: 182 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV-KFSPNGKYILAATLDNTLKL 240
Query: 599 WSVDKGQVSREFRGHRN---CVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVW 769
W KG+ + + GH+N C+ A + + G G +V+GS D +W
Sbjct: 241 WDYSKGKCLKTYTGHKNEKYCIF-----ANFSVTG---------GKWIVSGSEDNLVYIW 286
Query: 770 QVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGS--TDATIRAW 895
+ + Q L+GHT V+ + + + D TI+ W
Sbjct: 287 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Score = 66.6 bits (161), Expect = 3e-11
Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 8/180 (4%)
Frame = +2
Query: 257 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCC-ALLQGHESYVTFCQLE 433
L+ H ++ + + DG +++ S DG R+W TA GQC L+ V+F +
Sbjct: 164 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 223
Query: 434 DEAAFTCSA--DCTIRKWDVLTGQCLQVFRGHTS-----IVNRILVTNNQLFSSSYDRTA 592
+ +A D T++ WD G+CL+ + GH + N + + S S D
Sbjct: 224 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 283
Query: 593 RAWSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQ 772
W++ ++ ++ +GH + V++ A E +A L D T K+W+
Sbjct: 284 YIWNLQTKEIVQKLQGHTDVVISTACHP---------TENIIASAAL---ENDKTIKLWK 331
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 33,992,798
Number of extensions: 1455181
Number of successful extensions: 6967
Number of sequences better than 1.0e-05: 90
Number of HSP's gapped: 5956
Number of HSP's successfully gapped: 225
Length of query: 495
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 392
Effective length of database: 8,779,541
Effective search space: 3441580072
Effective search space used: 3441580072
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVR01_0011_G02
(1487 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr18 841 0.0
>Sscrofa_Chr18
|| Length = 61220071
Score = 841 bits (424), Expect = 0.0
Identities = 424/424 (100%)
Strand = Plus / Plus
Query: 538 caggatcctggtcaccaacaaccagctcttcagcagttcctatgaccggacagctcgcgc 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6342689 caggatcctggtcaccaacaaccagctcttcagcagttcctatgaccggacagctcgcgc 6342748
Query: 598 ctggagtgtagacaaagggcaggtgtcgcgggagttccggggccaccgcaactgtgtgct 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6342749 ctggagtgtagacaaagggcaggtgtcgcgggagttccggggccaccgcaactgtgtgct 6342808
Query: 658 gactctagcctactctgccccctgggacctgcctggggctccctgcgtggaggaggccgt 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6342809 gactctagcctactctgccccctgggacctgcctggggctccctgcgtggaggaggccgt 6342868
Query: 718 ggctggggggcttctggtgacgggaagcacagacggcacagccaaggtgtggcaggtggc 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6342869 ggctggggggcttctggtgacgggaagcacagacggcacagccaaggtgtggcaggtggc 6342928
Query: 778 cagtggctgctgccaccagacgctgcggggccacacgggcgccgtgctctgcctggtgtt 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6342929 cagtggctgctgccaccagacgctgcggggccacacgggcgccgtgctctgcctggtgtt 6342988
Query: 838 ggacacacctggccacacagccttcaccggcagcaccgacgccaccatccgcgcctggga 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6342989 ggacacacctggccacacagccttcaccggcagcaccgacgccaccatccgcgcctggga 6343048
Query: 898 catcctgagtggggagccgctgcgcgtgttccgggagcaccagggctccatcatctgtct 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6343049 catcctgagtggggagccgctgcgcgtgttccgggagcaccagggctccatcatctgtct 6343108
Query: 958 ggag 961
||||
Sbjct: 6343109 ggag 6343112
Score = 523 bits (264), Expect = e-146
Identities = 279/284 (98%)
Strand = Plus / Plus
Query: 960 agctggtgaaccggcacgtgtactcgggcagcgccgacaggacggtcaagtgctggctgg 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6350168 agctggtgaaccggcacgtgtactcgggcagcgccgacaggacggtcaagtgctggctgg 6350227
Query: 1020 cggacacgggcgagcgcgtgcgcacgttcgccgcccacagacacagcgtgagcgccctca 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6350228 cggacacgggcgagcgcgtgcgcacgttcgccgcccacagacacagcgtgagcgccctca 6350287
Query: 1080 agtaccacgcgggcacctgtaagtgaccccctcgcccagggcccctctgcttcctcttac 1139
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6350288 agtatcacgcaggcacctgtaagtgaccccctcgcccagggcccctctgcttcctcttac 6350347
Query: 1140 tcccctccctgctgagcctcagctgcattcagtttggtcagcggccaagggcggtagccg 1199
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 6350348 tcccctccctgctgagcctcagctgcattcagtttggtcagcggccaagggcggcagctg 6350407
Query: 1200 tgcacgtttattcctccgcggaaataaggtccaaacaggggtgt 1243
||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 6350408 tgcacgtttattcctccgcagaaataaggtccaaacaggggtgt 6350451
Score = 484 bits (244), Expect = e-134
Identities = 250/252 (99%)
Strand = Plus / Minus
Query: 148 agcctcagggagctgctgccgcgtgggtgccggggcgcccctccctagcggggcgcagcc 207
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6333239 agccttagggagctgctgccgcgtgggtgccggggcgcccctccctagcggggcgcagcc 6333180
Query: 208 tgcgcccggtccccgcccgaccagcggaatggggggcggagggtctgccctgagggtctg 267
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 6333179 tgcgcccggtccccgcccgaccagcagaatggggggcggagggtctgccctgagggtctg 6333120
Query: 268 cgcggaccaccgcgggggcatcaactggctcagcctgagccccgacgggcagcgcctgct 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6333119 cgcggaccaccgcgggggcatcaactggctcagcctgagccccgacgggcagcgcctgct 6333060
Query: 328 gacgggcagcgaggacggcaccgcccggctctggagcaccgcggacggccagtgctgcgc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6333059 gacgggcagcgaggacggcaccgcccggctctggagcaccgcggacggccagtgctgcgc 6333000
Query: 388 cctcctgcaagg 399
||||||||||||
Sbjct: 6332999 cctcctgcaagg 6332988
Score = 210 bits (106), Expect = 2e-51
Identities = 109/110 (99%)
Strand = Plus / Minus
Query: 1 cacagcgcggggctacgagggtgcgcagttccccgggtcccccgagtccccgacgcccgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6333579 cacagcgcggggctacgagggtgcgcagttccccgggtcccccgagtccccgacgcccgg 6333520
Query: 61 cgaggagatctgggttttccagcgcgccccgcaagacgcctctgctcagg 110
|||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 6333519 cgaggagatctgggttttccagcgcgccccgcgagacgcctctgctcagg 6333470
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,979,189
Number of extensions: 165
Number of successful extensions: 165
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 4
Length of query: 1487
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1466
Effective length of database: 2,808,413,156
Effective search space: 4117133686696
Effective search space used: 4117133686696
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)