Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVR01_0027_F12
(1227 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_036360.3| methionine-R-sulfoxide reductase B2, mitochondr... 297 1e-80
Alignment gi|NP_932346.1| methionine-R-sulfoxide reductase B3 isoform 1 [... 143 4e-34
Alignment gi|NP_001180390.1| methionine-R-sulfoxide reductase B3 isoform ... 141 1e-33
Alignment gi|NP_001180389.1| methionine-R-sulfoxide reductase B3 isoform ... 141 1e-33
Alignment gi|NP_001026849.1| methionine-R-sulfoxide reductase B3 isoform ... 141 1e-33
Alignment gi|NP_057416.1| methionine-R-sulfoxide reductase B1 [Homo sapie... 60 4e-09
>ref|NP_036360.3| methionine-R-sulfoxide reductase B2, mitochondrial precursor [Homo
sapiens].
Length = 182
Score = 297 bits (761), Expect = 1e-80
Identities = 145/182 (79%), Positives = 152/182 (83%)
Frame = +3
Query: 9 MARFFRAGPGLPFREVLSRAVWGRADNGGLSPKVGTGDAGSLTKREPFLSKSEWQKKLTP 188
MAR GL RAV G+A GG G G+AGSL E L+KSEWQKKLTP
Sbjct: 1 MARLLWLLRGLTLGTAPRRAVRGQAGGGGPGTGPGLGEAGSLATCELPLAKSEWQKKLTP 60
Query: 189 ERFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTS 368
E+F+VTREKGTEPPFSG YLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTS
Sbjct: 61 EQFYVTREKGTEPPFSGIYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTS 120
Query: 369 GSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFCINSVALKFKPR 548
GSDES TGILRR+DTSLG+ARTEVVCKQCEAHLGHVFPDGPGP GQRFCINSVALKFKPR
Sbjct: 121 GSDESHTGILRRLDTSLGSARTEVVCKQCEAHLGHVFPDGPGPNGQRFCINSVALKFKPR 180
Query: 549 KH 554
KH
Sbjct: 181 KH 182
>ref|NP_932346.1| methionine-R-sulfoxide reductase B3 isoform 1 [Homo sapiens].
Length = 192
Score = 143 bits (360), Expect = 4e-34
Identities = 70/153 (45%), Positives = 95/153 (62%), Gaps = 3/153 (1%)
Frame = +3
Query: 96 LSPKVGTGDAGSLTKREP---FLSKSEWQKKLTPERFHVTREKGTEPPFSGTYLNNKEAG 266
L+ +G+ +GS ++ S+ E +K+LTP ++HVT+EKGTE F G Y ++K+ G
Sbjct: 23 LAAALGSAQSGSCRDKKNCKVVFSQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPG 82
Query: 267 MYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVC 446
+Y CV C +PLF SE K+ SG+GWPSF + + +D D S G R E C
Sbjct: 83 IYKCVVCGTPLFKSETKFDSGSGWPSFHDVINSEAITFTD-------DFSYGMHRVETSC 135
Query: 447 KQCEAHLGHVFPDGPGPTGQRFCINSVALKFKP 545
QC AHLGH+F DGP PTG+R+CINS AL F P
Sbjct: 136 SQCGAHLGHIFDDGPRPTGKRYCINSAALSFTP 168
>ref|NP_001180390.1| methionine-R-sulfoxide reductase B3 isoform 2 [Homo sapiens].
Length = 185
Score = 141 bits (355), Expect = 1e-33
Identities = 66/130 (50%), Positives = 85/130 (65%)
Frame = +3
Query: 156 SKSEWQKKLTPERFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTG 335
S+ E +K+LTP ++HVT+EKGTE F G Y ++K+ G+Y CV C +PLF SE K+ SG+G
Sbjct: 39 SQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSG 98
Query: 336 WPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFC 515
WPSF + + +D D S G R E C QC AHLGH+F DGP PTG+R+C
Sbjct: 99 WPSFHDVINSEAITFTD-------DFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYC 151
Query: 516 INSVALKFKP 545
INS AL F P
Sbjct: 152 INSAALSFTP 161
>ref|NP_001180389.1| methionine-R-sulfoxide reductase B3 isoform 2 [Homo sapiens].
Length = 185
Score = 141 bits (355), Expect = 1e-33
Identities = 66/130 (50%), Positives = 85/130 (65%)
Frame = +3
Query: 156 SKSEWQKKLTPERFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTG 335
S+ E +K+LTP ++HVT+EKGTE F G Y ++K+ G+Y CV C +PLF SE K+ SG+G
Sbjct: 39 SQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSG 98
Query: 336 WPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFC 515
WPSF + + +D D S G R E C QC AHLGH+F DGP PTG+R+C
Sbjct: 99 WPSFHDVINSEAITFTD-------DFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYC 151
Query: 516 INSVALKFKP 545
INS AL F P
Sbjct: 152 INSAALSFTP 161
>ref|NP_001026849.1| methionine-R-sulfoxide reductase B3 isoform 2 [Homo sapiens].
Length = 185
Score = 141 bits (355), Expect = 1e-33
Identities = 66/130 (50%), Positives = 85/130 (65%)
Frame = +3
Query: 156 SKSEWQKKLTPERFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTG 335
S+ E +K+LTP ++HVT+EKGTE F G Y ++K+ G+Y CV C +PLF SE K+ SG+G
Sbjct: 39 SQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSG 98
Query: 336 WPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFC 515
WPSF + + +D D S G R E C QC AHLGH+F DGP PTG+R+C
Sbjct: 99 WPSFHDVINSEAITFTD-------DFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYC 151
Query: 516 INSVALKFKP 545
INS AL F P
Sbjct: 152 INSAALSFTP 161
>ref|NP_057416.1| methionine-R-sulfoxide reductase B1 [Homo sapiens].
Length = 116
Score = 60.1 bits (144), Expect = 4e-09
Identities = 39/104 (37%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Frame = +3
Query: 243 YLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEA-HGTSGSDESDTGILRRVDTSL 419
+ N+ E G+Y C C LFSS KY + WP+F+E H S + +R + +
Sbjct: 12 FQNHFEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADS--------VAKRPEHNR 63
Query: 420 GTARTEVVCKQCEAHLGHVF-PDGPGPTGQRFCINSVALKFKPR 548
A +V C +C LGH F DGP P RF I S +LKF P+
Sbjct: 64 SEA-LKVSCGKCGNGLGHEFLNDGPKPGQSRFUIFSSSLKFVPK 106
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 48,387,269
Number of extensions: 1314350
Number of successful extensions: 4157
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4152
Number of HSP's successfully gapped: 6
Length of query: 409
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 304
Effective length of database: 14,835,944
Effective search space: 4510126976
Effective search space used: 4510126976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA OVR01_0027_F12
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVR01_0027_F12
(1227 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850458.1| PREDICTED: similar to Methionine-R-sulfoxide re... 280 2e-75
Alignment gi|XP_850508.1| PREDICTED: similar to methionine-R-sulfoxide re... 139 4e-33
Alignment gi|NP_001108221.1| selenoprotein X, 1 [Canis lupus familiaris]. 60 6e-09
>ref|XP_850458.1| PREDICTED: similar to Methionine-R-sulfoxide reductase B [Canis
familiaris].
Length = 176
Score = 280 bits (717), Expect = 2e-75
Identities = 129/142 (90%), Positives = 135/142 (95%)
Frame = +3
Query: 129 SLTKREPFLSKSEWQKKLTPERFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSS 308
SLTK E L+KSEWQKKLTPE+F+VTREKGTEPPFSG YLNNKE+GMYHCVCCDSPLFSS
Sbjct: 35 SLTKHELPLTKSEWQKKLTPEQFYVTREKGTEPPFSGVYLNNKESGMYHCVCCDSPLFSS 94
Query: 309 EKKYCSGTGWPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDG 488
EKKYCSGTGWP+FSEAHGTSGSDE DTGILRRVDTSLG RTEVVCKQCEAHLGHVFPDG
Sbjct: 95 EKKYCSGTGWPAFSEAHGTSGSDERDTGILRRVDTSLGLTRTEVVCKQCEAHLGHVFPDG 154
Query: 489 PGPTGQRFCINSVALKFKPRKH 554
PGP+GQRFCINSVALKFKPRKH
Sbjct: 155 PGPSGQRFCINSVALKFKPRKH 176
>ref|XP_850508.1| PREDICTED: similar to methionine-R-sulfoxide reductase B3 [Canis
familiaris].
Length = 530
Score = 139 bits (351), Expect = 4e-33
Identities = 68/130 (52%), Positives = 85/130 (65%)
Frame = +3
Query: 156 SKSEWQKKLTPERFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTG 335
S+ E +K+LTP ++HVT+EKGTE F G Y ++K+ G+Y CV C +PLF SE K+ SG+G
Sbjct: 386 SQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFRSESKFDSGSG 445
Query: 336 WPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFC 515
WPSF H SD I D S G R E C QC AHLGH+F DGP PTG+R+C
Sbjct: 446 WPSF---HDVISSD----AITFTDDFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYC 498
Query: 516 INSVALKFKP 545
INS +L F P
Sbjct: 499 INSASLAFTP 508
>ref|NP_001108221.1| selenoprotein X, 1 [Canis lupus familiaris].
Length = 116
Score = 59.7 bits (143), Expect = 6e-09
Identities = 39/104 (37%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Frame = +3
Query: 243 YLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEA-HGTSGSDESDTGILRRVDTSL 419
+ N+ E G+Y C C LFSS KY + WP+F+E H S + +R + +
Sbjct: 12 FQNHFEPGVYVCAKCGHELFSSRSKYAHSSPWPAFTETIHADS--------VAKRPERNS 63
Query: 420 GTARTEVVCKQCEAHLGHVF-PDGPGPTGQRFCINSVALKFKPR 548
A +V C +C LGH F DGP P RF I S +LKF P+
Sbjct: 64 PEA-LKVSCGKCGNGLGHEFLNDGPKPGKSRFUIFSSSLKFIPK 106
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 49,118,067
Number of extensions: 1321435
Number of successful extensions: 4180
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4177
Number of HSP's successfully gapped: 3
Length of query: 409
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 304
Effective length of database: 15,374,224
Effective search space: 4673764096
Effective search space used: 4673764096
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVR01_0027_F12
(1227 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_083895.1| methionine-R-sulfoxide reductase B2, mitochondr... 272 4e-73
Alignment gi|NP_796066.1| methionine-R-sulfoxide reductase B3, mitochondr... 140 3e-33
Alignment gi|NP_038787.1| methionine-R-sulfoxide reductase B1 [Mus muscul... 54 3e-07
>ref|NP_083895.1| methionine-R-sulfoxide reductase B2, mitochondrial precursor [Mus
musculus].
Length = 175
Score = 272 bits (695), Expect = 4e-73
Identities = 133/181 (73%), Positives = 145/181 (80%)
Frame = +3
Query: 9 MARFFRAGPGLPFREVLSRAVWGRADNGGLSPKVGTGDAGSLTKREPFLSKSEWQKKLTP 188
MAR RA GLP + R G A +G + D GSLTK + LS+++WQKKLTP
Sbjct: 1 MARLLRALRGLPLLQAPGRLARGCAGSG-------SKDTGSLTKSKRSLSEADWQKKLTP 53
Query: 189 ERFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTS 368
E+F+VTREKGTE PFSG YLNNKE GMYHCVCCDSPLFSSEKKYCSGTGWPSFSEA+G+
Sbjct: 54 EQFYVTREKGTEAPFSGMYLNNKETGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAYGSK 113
Query: 369 GSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFCINSVALKFKPR 548
GSDES TGILRR+DTSLG R EVVCKQCEAHLGHVFPDGP PTGQRFCINSVALKFKP
Sbjct: 114 GSDESHTGILRRLDTSLGCPRMEVVCKQCEAHLGHVFPDGPKPTGQRFCINSVALKFKPS 173
Query: 549 K 551
K
Sbjct: 174 K 174
>ref|NP_796066.1| methionine-R-sulfoxide reductase B3, mitochondrial precursor [Mus
musculus].
Length = 186
Score = 140 bits (352), Expect = 3e-33
Identities = 64/130 (49%), Positives = 86/130 (66%)
Frame = +3
Query: 156 SKSEWQKKLTPERFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTG 335
S+ E +K+LTP ++HVT+EKGTE F G Y ++K+ G+Y CV C +PLF SE K+ SG+G
Sbjct: 39 SQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSG 98
Query: 336 WPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFC 515
WP+F + + + +D D S G R E C QC AHLGH+F DGP PTG+R+C
Sbjct: 99 WPAFHDVISSEAIEFTD-------DFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYC 151
Query: 516 INSVALKFKP 545
INS +L F P
Sbjct: 152 INSASLSFTP 161
>ref|NP_038787.1| methionine-R-sulfoxide reductase B1 [Mus musculus].
Length = 116
Score = 53.5 bits (127), Expect = 3e-07
Identities = 36/104 (34%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
Frame = +3
Query: 243 YLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEA-HGTSGSDESDTGILRRVDTSL 419
+ N+ E G+Y C C LFSS KY + WP+F+E H S + +
Sbjct: 12 FQNHFEPGVYVCAKCSYELFSSHSKYAHSSPWPAFTETIHPDS---------VTKCPEKN 62
Query: 420 GTARTEVVCKQCEAHLGHVF-PDGPGPTGQRFCINSVALKFKPR 548
+V C +C LGH F DGP RF I S +LKF P+
Sbjct: 63 RPEALKVSCGKCGNGLGHEFLNDGPKRGQSRFUIFSSSLKFVPK 106
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,117,931
Number of extensions: 1110904
Number of successful extensions: 3631
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3628
Number of HSP's successfully gapped: 3
Length of query: 409
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 305
Effective length of database: 12,493,815
Effective search space: 3810613575
Effective search space used: 3810613575
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVR01_0027_F12
(1227 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001193059.1| methionine-R-sulfoxide reductase B2, mitocho... 311 7e-85
Alignment gi|XP_002692136.1| PREDICTED: methionine sulfoxide reductase B2... 311 7e-85
Alignment gi|XP_002687590.1| PREDICTED: methionine sulfoxide reductase B3... 140 2e-33
Alignment gi|XP_002687589.1| PREDICTED: methionine sulfoxide reductase B3... 140 2e-33
Alignment gi|XP_002687588.1| PREDICTED: methionine sulfoxide reductase B3... 140 2e-33
Alignment gi|XP_002687587.1| PREDICTED: methionine sulfoxide reductase B3... 140 2e-33
Alignment gi|XP_001250169.1| PREDICTED: methionine sulfoxide reductase B3... 140 2e-33
Alignment gi|XP_001250113.1| PREDICTED: methionine sulfoxide reductase B3... 140 2e-33
Alignment gi|XP_875267.2| PREDICTED: methionine sulfoxide reductase B3 is... 140 2e-33
Alignment gi|XP_001250066.1| PREDICTED: methionine sulfoxide reductase B3... 140 2e-33
>ref|NP_001193059.1| methionine-R-sulfoxide reductase B2, mitochondrial [Bos taurus].
Length = 182
Score = 311 bits (797), Expect = 7e-85
Identities = 149/182 (81%), Positives = 155/182 (85%)
Frame = +3
Query: 9 MARFFRAGPGLPFREVLSRAVWGRADNGGLSPKVGTGDAGSLTKREPFLSKSEWQKKLTP 188
MAR RA GL RE AV GRAD GG G+ AG L KR+P LSKSEWQKKLTP
Sbjct: 1 MARLLRALRGLTLREAPGWAVRGRADCGGFRAGAGSPQAGCLIKRQPALSKSEWQKKLTP 60
Query: 189 ERFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTS 368
E+FHVTREKGTEPPFSG YLNNKE GMYHCVCCDSPLFSSEKK+CSGTGWPSFSEAHGTS
Sbjct: 61 EQFHVTREKGTEPPFSGIYLNNKEPGMYHCVCCDSPLFSSEKKFCSGTGWPSFSEAHGTS 120
Query: 369 GSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFCINSVALKFKPR 548
GSDES+TGILRR DTSLG ARTEVVCKQCEAHLGHVFPDGPGP GQRFCINSVAL+FKPR
Sbjct: 121 GSDESNTGILRRADTSLGPARTEVVCKQCEAHLGHVFPDGPGPAGQRFCINSVALRFKPR 180
Query: 549 KH 554
KH
Sbjct: 181 KH 182
>ref|XP_002692136.1| PREDICTED: methionine sulfoxide reductase B2-like [Bos taurus].
Length = 182
Score = 311 bits (797), Expect = 7e-85
Identities = 149/182 (81%), Positives = 155/182 (85%)
Frame = +3
Query: 9 MARFFRAGPGLPFREVLSRAVWGRADNGGLSPKVGTGDAGSLTKREPFLSKSEWQKKLTP 188
MAR RA GL RE AV GRAD GG G+ AG L KR+P LSKSEWQKKLTP
Sbjct: 1 MARLLRALRGLTLREAPGWAVRGRADCGGFRAGAGSPQAGCLIKRQPALSKSEWQKKLTP 60
Query: 189 ERFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTS 368
E+FHVTREKGTEPPFSG YLNNKE GMYHCVCCDSPLFSSEKK+CSGTGWPSFSEAHGTS
Sbjct: 61 EQFHVTREKGTEPPFSGIYLNNKEPGMYHCVCCDSPLFSSEKKFCSGTGWPSFSEAHGTS 120
Query: 369 GSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFCINSVALKFKPR 548
GSDES+TGILRR DTSLG ARTEVVCKQCEAHLGHVFPDGPGP GQRFCINSVAL+FKPR
Sbjct: 121 GSDESNTGILRRADTSLGPARTEVVCKQCEAHLGHVFPDGPGPAGQRFCINSVALRFKPR 180
Query: 549 KH 554
KH
Sbjct: 181 KH 182
>ref|XP_002687590.1| PREDICTED: methionine sulfoxide reductase B3-like isoform 4 [Bos
taurus].
Length = 184
Score = 140 bits (353), Expect = 2e-33
Identities = 68/130 (52%), Positives = 85/130 (65%)
Frame = +3
Query: 156 SKSEWQKKLTPERFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTG 335
S+ E +K+LTP ++HVT+EKGTE F G Y ++K+ G+Y CV C +PLF SE K+ SG+G
Sbjct: 39 SQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSG 98
Query: 336 WPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFC 515
WPSF H SD I D S G R E C QC AHLGH+F DGP PTG+R+C
Sbjct: 99 WPSF---HDVINSD----AITFTDDFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYC 151
Query: 516 INSVALKFKP 545
INS +L F P
Sbjct: 152 INSASLSFSP 161
>ref|XP_002687589.1| PREDICTED: methionine sulfoxide reductase B3-like isoform 3 [Bos
taurus].
Length = 184
Score = 140 bits (353), Expect = 2e-33
Identities = 68/130 (52%), Positives = 85/130 (65%)
Frame = +3
Query: 156 SKSEWQKKLTPERFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTG 335
S+ E +K+LTP ++HVT+EKGTE F G Y ++K+ G+Y CV C +PLF SE K+ SG+G
Sbjct: 39 SQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSG 98
Query: 336 WPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFC 515
WPSF H SD I D S G R E C QC AHLGH+F DGP PTG+R+C
Sbjct: 99 WPSF---HDVINSD----AITFTDDFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYC 151
Query: 516 INSVALKFKP 545
INS +L F P
Sbjct: 152 INSASLSFSP 161
>ref|XP_002687588.1| PREDICTED: methionine sulfoxide reductase B3-like isoform 2 [Bos
taurus].
Length = 191
Score = 140 bits (353), Expect = 2e-33
Identities = 68/130 (52%), Positives = 85/130 (65%)
Frame = +3
Query: 156 SKSEWQKKLTPERFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTG 335
S+ E +K+LTP ++HVT+EKGTE F G Y ++K+ G+Y CV C +PLF SE K+ SG+G
Sbjct: 46 SQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSG 105
Query: 336 WPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFC 515
WPSF H SD I D S G R E C QC AHLGH+F DGP PTG+R+C
Sbjct: 106 WPSF---HDVINSD----AITFTDDFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYC 158
Query: 516 INSVALKFKP 545
INS +L F P
Sbjct: 159 INSASLSFSP 168
>ref|XP_002687587.1| PREDICTED: methionine sulfoxide reductase B3-like isoform 1 [Bos
taurus].
Length = 184
Score = 140 bits (353), Expect = 2e-33
Identities = 68/130 (52%), Positives = 85/130 (65%)
Frame = +3
Query: 156 SKSEWQKKLTPERFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTG 335
S+ E +K+LTP ++HVT+EKGTE F G Y ++K+ G+Y CV C +PLF SE K+ SG+G
Sbjct: 39 SQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSG 98
Query: 336 WPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFC 515
WPSF H SD I D S G R E C QC AHLGH+F DGP PTG+R+C
Sbjct: 99 WPSF---HDVINSD----AITFTDDFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYC 151
Query: 516 INSVALKFKP 545
INS +L F P
Sbjct: 152 INSASLSFSP 161
>ref|XP_001250169.1| PREDICTED: methionine sulfoxide reductase B3 isoform 3 [Bos
taurus].
Length = 184
Score = 140 bits (353), Expect = 2e-33
Identities = 68/130 (52%), Positives = 85/130 (65%)
Frame = +3
Query: 156 SKSEWQKKLTPERFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTG 335
S+ E +K+LTP ++HVT+EKGTE F G Y ++K+ G+Y CV C +PLF SE K+ SG+G
Sbjct: 39 SQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSG 98
Query: 336 WPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFC 515
WPSF H SD I D S G R E C QC AHLGH+F DGP PTG+R+C
Sbjct: 99 WPSF---HDVINSD----AITFTDDFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYC 151
Query: 516 INSVALKFKP 545
INS +L F P
Sbjct: 152 INSASLSFSP 161
>ref|XP_001250113.1| PREDICTED: methionine sulfoxide reductase B3 isoform 2 [Bos
taurus].
Length = 184
Score = 140 bits (353), Expect = 2e-33
Identities = 68/130 (52%), Positives = 85/130 (65%)
Frame = +3
Query: 156 SKSEWQKKLTPERFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTG 335
S+ E +K+LTP ++HVT+EKGTE F G Y ++K+ G+Y CV C +PLF SE K+ SG+G
Sbjct: 39 SQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSG 98
Query: 336 WPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFC 515
WPSF H SD I D S G R E C QC AHLGH+F DGP PTG+R+C
Sbjct: 99 WPSF---HDVINSD----AITFTDDFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYC 151
Query: 516 INSVALKFKP 545
INS +L F P
Sbjct: 152 INSASLSFSP 161
>ref|XP_875267.2| PREDICTED: methionine sulfoxide reductase B3 isoform 4 [Bos
taurus].
Length = 191
Score = 140 bits (353), Expect = 2e-33
Identities = 68/130 (52%), Positives = 85/130 (65%)
Frame = +3
Query: 156 SKSEWQKKLTPERFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTG 335
S+ E +K+LTP ++HVT+EKGTE F G Y ++K+ G+Y CV C +PLF SE K+ SG+G
Sbjct: 46 SQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSG 105
Query: 336 WPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFC 515
WPSF H SD I D S G R E C QC AHLGH+F DGP PTG+R+C
Sbjct: 106 WPSF---HDVINSD----AITFTDDFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYC 158
Query: 516 INSVALKFKP 545
INS +L F P
Sbjct: 159 INSASLSFSP 168
>ref|XP_001250066.1| PREDICTED: methionine sulfoxide reductase B3 isoform 1 [Bos
taurus].
Length = 184
Score = 140 bits (353), Expect = 2e-33
Identities = 68/130 (52%), Positives = 85/130 (65%)
Frame = +3
Query: 156 SKSEWQKKLTPERFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTG 335
S+ E +K+LTP ++HVT+EKGTE F G Y ++K+ G+Y CV C +PLF SE K+ SG+G
Sbjct: 39 SQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSG 98
Query: 336 WPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFC 515
WPSF H SD I D S G R E C QC AHLGH+F DGP PTG+R+C
Sbjct: 99 WPSF---HDVINSD----AITFTDDFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYC 151
Query: 516 INSVALKFKP 545
INS +L F P
Sbjct: 152 INSASLSFSP 161
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 47,411,290
Number of extensions: 1333299
Number of successful extensions: 4330
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 4317
Number of HSP's successfully gapped: 11
Length of query: 409
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 304
Effective length of database: 14,207,134
Effective search space: 4318968736
Effective search space used: 4318968736
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVR01_0027_F12
(1227 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003130825.1| PREDICTED: methionine-R-sulfoxide reductase ... 387 e-108
Alignment gi|XP_003357809.1| PREDICTED: methionine-R-sulfoxide reductase ... 305 3e-83
Alignment gi|XP_003355557.1| PREDICTED: methionine-R-sulfoxide reductase ... 73 3e-13
Alignment gi|NP_001090929.1| methionine-R-sulfoxide reductase B1 [Sus scr... 57 3e-08
>ref|XP_003130825.1| PREDICTED: methionine-R-sulfoxide reductase B2, mitochondrial-like
[Sus scrofa].
Length = 182
Score = 387 bits (994), Expect = e-108
Identities = 181/182 (99%), Positives = 182/182 (100%)
Frame = +3
Query: 9 MARFFRAGPGLPFREVLSRAVWGRADNGGLSPKVGTGDAGSLTKREPFLSKSEWQKKLTP 188
MARFFRAGPGLPFREVLSRAVWGRADNGGLSPKVGTGDAGSLTKREPFLSKSEWQKKLTP
Sbjct: 1 MARFFRAGPGLPFREVLSRAVWGRADNGGLSPKVGTGDAGSLTKREPFLSKSEWQKKLTP 60
Query: 189 ERFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTS 368
E+FHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTS
Sbjct: 61 EQFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTS 120
Query: 369 GSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFCINSVALKFKPR 548
GSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFCINSVALKFKPR
Sbjct: 121 GSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFCINSVALKFKPR 180
Query: 549 KH 554
KH
Sbjct: 181 KH 182
>ref|XP_003357809.1| PREDICTED: methionine-R-sulfoxide reductase B2, mitochondrial-like
[Sus scrofa].
Length = 253
Score = 305 bits (781), Expect = 3e-83
Identities = 141/142 (99%), Positives = 142/142 (100%)
Frame = +3
Query: 129 SLTKREPFLSKSEWQKKLTPERFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSS 308
SLTKREPFLSKSEWQKKLTPE+FHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSS
Sbjct: 112 SLTKREPFLSKSEWQKKLTPEQFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSS 171
Query: 309 EKKYCSGTGWPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDG 488
EKKYCSGTGWPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDG
Sbjct: 172 EKKYCSGTGWPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDG 231
Query: 489 PGPTGQRFCINSVALKFKPRKH 554
PGPTGQRFCINSVALKFKPRKH
Sbjct: 232 PGPTGQRFCINSVALKFKPRKH 253
>ref|XP_003355557.1| PREDICTED: methionine-R-sulfoxide reductase B3, mitochondrial-like
[Sus scrofa].
Length = 111
Score = 73.2 bits (178), Expect = 3e-13
Identities = 34/72 (47%), Positives = 42/72 (58%)
Frame = +3
Query: 330 TGWPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQR 509
+GWPSF + + +D D S G R E C QC AHLGH+F DGP PTG+R
Sbjct: 25 SGWPSFHDVISSEAVTFTD-------DFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKR 77
Query: 510 FCINSVALKFKP 545
+CINS +L F P
Sbjct: 78 YCINSASLSFTP 89
>ref|NP_001090929.1| methionine-R-sulfoxide reductase B1 [Sus scrofa].
Length = 116
Score = 56.6 bits (135), Expect = 3e-08
Identities = 40/110 (36%), Positives = 54/110 (49%), Gaps = 2/110 (1%)
Frame = +3
Query: 243 YLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEA-HGTSGSDESDTGILRRVDTSL 419
+ N+ E G+Y C C LFSS KY + WP+F+E H S + +R + +
Sbjct: 12 FQNHFEPGVYVCAKCGYELFSSHSKYAHSSPWPAFTETIHADS--------VAKRPEHNR 63
Query: 420 GTARTEVVCKQCEAHLGHVF-PDGPGPTGQRFCINSVALKFKPRKH*PSP 566
A +V C +C LGH F DGP RF I S +LKF P+ SP
Sbjct: 64 PGA-LKVSCGRCGNGLGHEFLNDGPKRGQSRFUIFSSSLKFIPKGQESSP 112
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,849,771
Number of extensions: 908267
Number of successful extensions: 2634
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2631
Number of HSP's successfully gapped: 4
Length of query: 409
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 308
Effective length of database: 8,829,335
Effective search space: 2719435180
Effective search space used: 2719435180
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVR01_0027_F12
(1227 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr10 1441 0.0
>Sscrofa_Chr10
|| Length = 79102373
Score = 1441 bits (727), Expect = 0.0
Identities = 730/731 (99%)
Strand = Plus / Minus
Query: 451 agtgcgaagctcaccttggccatgtgtttcctgatggacctgggcctacaggtcagaggt 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57544891 agtgcgaagctcaccttggccatgtgtttcctgatggacctgggcctacaggtcagaggt 57544832
Query: 511 tttgcatcaacagtgtggcactcaagttcaaaccaaggaaacactgaccatcgccaggag 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57544831 tttgcatcaacagtgtggcactcaagttcaaaccaaggaaacactgaccatcgccaggag 57544772
Query: 571 tccctttctcttccaccctctcatttccaaactcgattttcataatttatgcaaatgact 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57544771 tccctttctcttccaccctctcatttccaaactcgattttcataatttatgcaaatgact 57544712
Query: 631 agttttattaatgaccaaactaggctaagcttgctggcataccttctctaattcattacc 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57544711 agttttattaatgaccaaactaggctaagcttgctggcataccttctctaattcattacc 57544652
Query: 691 tggagtcagctccaccctggctctggctctgactagaatttcacggaatgacagaggggc 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57544651 tggagtcagctccaccctggctctggctctgactagaatttcacggaatgacagaggggc 57544592
Query: 751 agtcctttcccttaaatcaacatctgtgggctttgccaggaccagagggcatgactcttt 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57544591 agtcctttcccttaaatcaacatctgtgggctttgccaggaccagagggcatgactcttt 57544532
Query: 811 ggggacattaggaggctgatggataagccaaagaactcctataaaactatgctgaatttt 870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57544531 ggggacattaggaggctgatggataagccaaagaactcctataaaactatgctgaatttt 57544472
Query: 871 ccattgcagtcaagtgtttcacagacatgtataggtgagaggtcaaacgagaagaggaat 930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57544471 ccattgcagtcaagtgtttcacagacatgtataggtgagaggtcaaacgagaagaggaat 57544412
Query: 931 gaaaatacgggatgaggatgatccacagtcccagtgtggaaaaggcaataaggaggcagg 990
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57544411 gaaaatacgggatgaggatgatccacagtcccagtgtggaaaaggcaataaggaggcagg 57544352
Query: 991 ttgtggacgagctgcgtttggggaggcacatgtggggatccacgggatgcaggagatttt 1050
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57544351 ttgtggacgagctgcgtttggggaggcacatgtggggatccacgggatgcaggagatttt 57544292
Query: 1051 tcccaaaaccttagactgtcttgaacattctaattccaacctctctacttgcaactaact 1110
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 57544291 tcccaaaaccttagactgtcttgaacattctaattccaacctctctacctgcaactaact 57544232
Query: 1111 ttcaatgggcgtttgttaaactttagtgataatgaatacaagtggctacaaagttaaact 1170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57544231 ttcaatgggcgtttgttaaactttagtgataatgaatacaagtggctacaaagttaaact 57544172
Query: 1171 ttaaaatgttc 1181
|||||||||||
Sbjct: 57544171 ttaaaatgttc 57544161
Score = 829 bits (418), Expect = 0.0
Identities = 922/1086 (84%), Gaps = 28/1086 (2%)
Strand = Plus / Plus
Query: 112 gaaccggagacgcagggtcccttacaaagcgtgagccgttcctctccaagagtgag--tg 169
|||| |||||| |||| || |||||||||||||||||||| ||||||||||||||| ||
Sbjct: 14945546 gaacaggagacacaggatctcttacaaagcgtgagccgtttctctccaagagtgagagtg 14945605
Query: 170 gcaaaagaagctgactccagagcgattccacgtcacgagagaaaaagggacagaaccgcc 229
|||| |||||||||||| | ||| ||||| ||||| |||||||||||||| |||| ||
Sbjct: 14945606 gcaagagaagctgactcgacagcaattccccgtcaggagagaaaaagggatggaacagct 14945665
Query: 230 tttcagtgggacctacctgaataacaaggaagcaggaatgtatcactgtgtgtgctgtga 289
||||||||||||||||||| ||||||||||||||| |||| || |||||| ||||||
Sbjct: 14945666 tttcagtgggacctacctgcctaacaaggaagcagggatgtgtcgctgtgtacactgtga 14945725
Query: 290 cagcccactcttcagctctgagaaaaagtactgctctggcactggatggccttcattttc 349
||| | |||||||| | ||||| ||||||||| ||| |||||||||||||||||||||||
Sbjct: 14945726 cagtc-actcttcaccgctgaggaaaagtacttctcgggcactggatggccttcattttc 14945784
Query: 350 tgaggctcacggcacatctggctctgatgagagtgacacagggatcctgagacgtgtgga 409
||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||
Sbjct: 14945785 tgaggctcacggcacatctggctctgatgagggtgacccaggaatcctgagacgtgtgga 14945844
Query: 410 cacctcgctgggaacagctcgcacggaggttgtctgcaagcagtgcgaagctcaccttgg 469
|||||| |||||| ||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 14945845 cacctcactgggaccagctggcccggaggttgtctgcaagcagtgcgaagctcaccttgg 14945904
Query: 470 ccatgtgtttcctgatggacctgggcctacaggtcagaggttttgcatcaacagtgtggc 529
||| |||||||||||||||||||||| || ||||| ||| || ||||||||||||||||
Sbjct: 14945905 ccacgtgtttcctgatggacctgggcatagtggtcacagggttcgcatcaacagtgtggc 14945964
Query: 530 actcaagttcaaaccaaggaaacactgaccatcgccaggagtccctttctctt--ccacc 587
|||| | ||| || ||||| |||| | || ||| ||||||| ||| ||| ||||
Sbjct: 14945965 gctcacggtcagttcagggaaatactgtctgtctccaagagtccc-ttcccttcaccacg 14946023
Query: 588 ctctcatttccaaactcgattttcataatttatgcaaatgactagttttattaatgacca 647
||| |||||||||||||| |||||||||||||||||||||||| |||||||||| ||||
Sbjct: 14946024 ctcacatttccaaactcggttttcataatttatgcaaatgactggttttattaactacca 14946083
Query: 648 aactaggctaagcttgctgg------------cataccttctctaattcattacctggag 695
||||||||| || ||||||| || ||||||||| ||||||| ||| |
Sbjct: 14946084 aactaggctgagtttgctggcaccaagcaagtcacaccttctctcattcattgcctaagg 14946143
Query: 696 tcagctccaccctggctctggctctgactagaatttcacggaatgacagaggggcagtcc 755
|||||| ||| || |||||||||||||| ||||| |||||||| |||||||| |
Sbjct: 14946144 tcagctgcactctagctctggctctgac------ttcacagaatgacaaaggggcagcca 14946197
Query: 756 tttcccttaaatcaacatctgtgggctttgccaggaccagagggcatgactctttgggga 815
||||||| |||||||| |||||||||||| | |||| ||||||| ||||||||||||||
Sbjct: 14946198 tttccctaaaatcaactcctgtgggctttgactggacaagagggcgtgactctttgggga 14946257
Query: 816 cattaggaggctgatggataagccaaagaactcctataaaactatgctgaattttccatt 875
|||||||||||||||||||||||||| | ||||| ||| |||| ||||||||||||||
Sbjct: 14946258 tattaggaggctgatggataagccaaaacattcctacaaacctatcctgaattttccatt 14946317
Query: 876 gcagtcaagtgtttcacagacatgtataggtgagaggtcaaacgagaagaggaatgaaaa 935
|||| |||| ||||||| |||| |||| ||| |||||| |||||||||| |||||
Sbjct: 14946318 tcagttaagttcttcacagccatgcgcaggtaggagatcaaacaagaagaggaaggaaaa 14946377
Query: 936 tacgggatgaggatgatccacagtcccagtgtggaaaaggcaataaggaggcaggttgtg 995
|| ||||| || || ||||||| |||||| |||||||||||| ||||||||||||| |
Sbjct: 14946378 tatgggattagaataatccacactcccagcatggaaaaggcaactaggaggcaggttggg 14946437
Query: 996 gacgagctgcgtttggggaggcacatgtggggatccacgggatgcaggagatttttccca 1055
|| | ||| |||| ||||||||| |||||||||||| |||||| ||||||||||||
Sbjct: 14946438 gatggtctgtgttt-tggaggcacaggtggggatccacaggatgc---agatttttccca 14946493
Query: 1056 aaaccttagactgtcttgaacattctaattccaacctctctacttgcaactaactttcaa 1115
|||| ||||| |||||||||||||||| |||||| ||||||| || | |||||||||||
Sbjct: 14946494 aaactttagattgtcttgaacattctagttccaaagtctctacctgaagctaactttcaa 14946553
Query: 1116 tgggcgtttgttaaactttagtgataatgaatacaagtggctacaaagttaaactttaaa 1175
||| |||||||||||||||||||||||||||||||||||| |||||| |||||||| ||
Sbjct: 14946554 cgggagtttgttaaactttagtgataatgaatacaagtggccacaaaggtaaactttgaa 14946613
Query: 1176 atgttc 1181
| ||||
Sbjct: 14946614 acgttc 14946619
Score = 299 bits (151), Expect = 2e-78
Identities = 151/151 (100%)
Strand = Plus / Minus
Query: 302 cagctctgagaaaaagtactgctctggcactggatggccttcattttctgaggctcacgg 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57545896 cagctctgagaaaaagtactgctctggcactggatggccttcattttctgaggctcacgg 57545837
Query: 362 cacatctggctctgatgagagtgacacagggatcctgagacgtgtggacacctcgctggg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57545836 cacatctggctctgatgagagtgacacagggatcctgagacgtgtggacacctcgctggg 57545777
Query: 422 aacagctcgcacggaggttgtctgcaagcag 452
|||||||||||||||||||||||||||||||
Sbjct: 57545776 aacagctcgcacggaggttgtctgcaagcag 57545746
Score = 252 bits (127), Expect = 4e-64
Identities = 127/127 (100%)
Strand = Plus / Minus
Query: 1 gcagcgtcatggcgcgcttcttccgcgcgggcccgggcttacccttccgagaggtgctct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57565684 gcagcgtcatggcgcgcttcttccgcgcgggcccgggcttacccttccgagaggtgctct 57565625
Query: 61 cgcgggcagtgtggggtcgtgccgacaatggcggcctcagcccgaaggtcggaaccggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57565624 cgcgggcagtgtggggtcgtgccgacaatggcggcctcagcccgaaggtcggaaccggag 57565565
Query: 121 acgcagg 127
|||||||
Sbjct: 57565564 acgcagg 57565558
Score = 198 bits (100), Expect = 5e-48
Identities = 103/104 (99%)
Strand = Plus / Minus
Query: 124 cagggtcccttacaaagcgtgagccgttcctctccaagagtgagtggcaaaagaagctga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57557991 cagggtcccttacaaagcgtgagccgttcctctccaagagtgagtggcaaaagaagctga 57557932
Query: 184 ctccagagcgattccacgtcacgagagaaaaagggacagaaccg 227
||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 57557931 ctccagagcaattccacgtcacgagagaaaaagggacagaaccg 57557888
Score = 155 bits (78), Expect = 7e-35
Identities = 78/78 (100%)
Strand = Plus / Minus
Query: 227 gcctttcagtgggacctacctgaataacaaggaagcaggaatgtatcactgtgtgtgctg 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57552014 gcctttcagtgggacctacctgaataacaaggaagcaggaatgtatcactgtgtgtgctg 57551955
Query: 287 tgacagcccactcttcag 304
||||||||||||||||||
Sbjct: 57551954 tgacagcccactcttcag 57551937
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,562,222
Number of extensions: 222
Number of successful extensions: 222
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 218
Number of HSP's successfully gapped: 8
Length of query: 1227
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1206
Effective length of database: 2,808,413,156
Effective search space: 3386946266136
Effective search space used: 3386946266136
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)