Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVR01_0030_G03
(1616 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002688649.1| PREDICTED: synapse defective 1, Rho GTPase, ... 355 6e-98
Alignment gi|XP_001787889.1| PREDICTED: synapse defective 1, Rho GTPase, ... 355 6e-98
Alignment gi|NP_001179527.1| rho GTPase-activating protein SYDE2 [Bos tau... 116 7e-26
Alignment gi|XP_002686332.1| PREDICTED: synapse defective 1, Rho GTPase, ... 116 7e-26
>ref|XP_002688649.1| PREDICTED: synapse defective 1, Rho GTPase, homolog 1 (C. elegans)
(predicted)-like [Bos taurus].
Length = 686
Score = 355 bits (911), Expect = 6e-98
Identities = 169/197 (85%), Positives = 170/197 (86%)
Frame = +1
Query: 1 VSSFHAHNRMTPQNLAVCFGPVLLPARQTPTRPRIRSSGPGLSNAVDFKRHIEVLHYLLQ 180
VSSFHAHNRMTPQNLAVCFGPVLLPARQ P RPRIRSSGPGLSNAVDFKRHIEVLHYLLQ
Sbjct: 490 VSSFHAHNRMTPQNLAVCFGPVLLPARQAPARPRIRSSGPGLSNAVDFKRHIEVLHYLLQ 549
Query: 181 AWPDPRRPPEAPELVPYLRPKPQPPLHLPLAGPDVVTRPRDRSGPESPPSNRYAGDWSVC 360
AWPDPRRPPE PELVPYLRPK QP LHLPLA P+VVTRPR R GPESPPSNRYAGDWSVC
Sbjct: 550 AWPDPRRPPEPPELVPYLRPKRQPSLHLPLASPEVVTRPRGRGGPESPPSNRYAGDWSVC 609
Query: 361 GRDFLPCGRDFLPGPDYDHXXXXXXXXXXXXXXXXXXATDFEDDFEAPFNPHLNLKDFDA 540
GRDFLPCGRDFL GPDYDH ATDFEDDFEAPFNPHLNLKDFDA
Sbjct: 610 GRDFLPCGRDFLSGPDYDHVTGSDSEDEDDEVGEPTGATDFEDDFEAPFNPHLNLKDFDA 669
Query: 541 LILDLERELSKQINVCL 591
LILDLERELSKQINVCL
Sbjct: 670 LILDLERELSKQINVCL 686
>ref|XP_001787889.1| PREDICTED: synapse defective 1, Rho GTPase, homolog 1 (C. elegans)
(predicted)-like, partial [Bos taurus].
Length = 564
Score = 355 bits (911), Expect = 6e-98
Identities = 169/197 (85%), Positives = 170/197 (86%)
Frame = +1
Query: 1 VSSFHAHNRMTPQNLAVCFGPVLLPARQTPTRPRIRSSGPGLSNAVDFKRHIEVLHYLLQ 180
VSSFHAHNRMTPQNLAVCFGPVLLPARQ P RPRIRSSGPGLSNAVDFKRHIEVLHYLLQ
Sbjct: 368 VSSFHAHNRMTPQNLAVCFGPVLLPARQAPARPRIRSSGPGLSNAVDFKRHIEVLHYLLQ 427
Query: 181 AWPDPRRPPEAPELVPYLRPKPQPPLHLPLAGPDVVTRPRDRSGPESPPSNRYAGDWSVC 360
AWPDPRRPPE PELVPYLRPK QP LHLPLA P+VVTRPR R GPESPPSNRYAGDWSVC
Sbjct: 428 AWPDPRRPPEPPELVPYLRPKRQPSLHLPLASPEVVTRPRGRGGPESPPSNRYAGDWSVC 487
Query: 361 GRDFLPCGRDFLPGPDYDHXXXXXXXXXXXXXXXXXXATDFEDDFEAPFNPHLNLKDFDA 540
GRDFLPCGRDFL GPDYDH ATDFEDDFEAPFNPHLNLKDFDA
Sbjct: 488 GRDFLPCGRDFLSGPDYDHVTGSDSEDEDDEVGEPTGATDFEDDFEAPFNPHLNLKDFDA 547
Query: 541 LILDLERELSKQINVCL 591
LILDLERELSKQINVCL
Sbjct: 548 LILDLERELSKQINVCL 564
>ref|NP_001179527.1| rho GTPase-activating protein SYDE2 [Bos taurus].
Length = 1187
Score = 116 bits (290), Expect = 7e-26
Identities = 71/151 (47%), Positives = 90/151 (59%), Gaps = 13/151 (8%)
Frame = +1
Query: 1 VSSFHAHNRMTPQNLAVCFGPVLLPARQTPT--RPRIRSSGPGLSNAVDFKRHIEVLHYL 174
V+S+H N+MT QNLAVCFGPVLL RQ + R+ + L+ A+DFK+HIEVLHYL
Sbjct: 957 VASYHDVNKMTCQNLAVCFGPVLLSQRQETSTHNNRVFTDSKELATALDFKKHIEVLHYL 1016
Query: 175 LQAWPDPRRP---------PEAPELVPYLRPKPQPPLHLPLAGPDV--VTRPRDRSGPES 321
LQ WP R PE + YLR K + P L L+G + V RPR ++ ES
Sbjct: 1017 LQLWPVQRLTIKESADNLFPEQKSSLNYLRRKKERPYLLNLSGTESSGVLRPR-QTRLES 1075
Query: 322 PPSNRYAGDWSVCGRDFLPCGRDFLPGPDYD 414
P SNRYAGDWS CG ++ ++ L DYD
Sbjct: 1076 PLSNRYAGDWSSCGENYFLNTKENLNTVDYD 1106
>ref|XP_002686332.1| PREDICTED: synapse defective 1, Rho GTPase, homolog 2 (C. elegans)
[Bos taurus].
Length = 1187
Score = 116 bits (290), Expect = 7e-26
Identities = 71/151 (47%), Positives = 90/151 (59%), Gaps = 13/151 (8%)
Frame = +1
Query: 1 VSSFHAHNRMTPQNLAVCFGPVLLPARQTPT--RPRIRSSGPGLSNAVDFKRHIEVLHYL 174
V+S+H N+MT QNLAVCFGPVLL RQ + R+ + L+ A+DFK+HIEVLHYL
Sbjct: 957 VASYHDVNKMTCQNLAVCFGPVLLSQRQETSTHNNRVFTDSKELATALDFKKHIEVLHYL 1016
Query: 175 LQAWPDPRRP---------PEAPELVPYLRPKPQPPLHLPLAGPDV--VTRPRDRSGPES 321
LQ WP R PE + YLR K + P L L+G + V RPR ++ ES
Sbjct: 1017 LQLWPVQRLTIKESADNLFPEQKSSLNYLRRKKERPYLLNLSGTESSGVLRPR-QTRLES 1075
Query: 322 PPSNRYAGDWSVCGRDFLPCGRDFLPGPDYD 414
P SNRYAGDWS CG ++ ++ L DYD
Sbjct: 1076 PLSNRYAGDWSSCGENYFLNTKENLNTVDYD 1106
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 70,417,148
Number of extensions: 2249393
Number of successful extensions: 11693
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 11364
Number of HSP's successfully gapped: 4
Length of query: 538
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 431
Effective length of database: 14,140,958
Effective search space: 6094752898
Effective search space used: 6094752898
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVR01_0030_G03
(1616 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_149014.3| rho GTPase-activating protein SYDE1 [Homo sapie... 333 2e-91
Alignment gi|NP_115560.1| rho GTPase-activating protein SYDE2 [Homo sapie... 122 1e-27
>ref|NP_149014.3| rho GTPase-activating protein SYDE1 [Homo sapiens].
Length = 735
Score = 333 bits (855), Expect = 2e-91
Identities = 156/197 (79%), Positives = 166/197 (84%)
Frame = +1
Query: 1 VSSFHAHNRMTPQNLAVCFGPVLLPARQTPTRPRIRSSGPGLSNAVDFKRHIEVLHYLLQ 180
VSSFHA+NRMTPQNLAVCFGPVLLPARQ PTRPR RSSGPGL++AVDFK HIEVLHYLLQ
Sbjct: 539 VSSFHAYNRMTPQNLAVCFGPVLLPARQAPTRPRARSSGPGLASAVDFKHHIEVLHYLLQ 598
Query: 181 AWPDPRRPPEAPELVPYLRPKPQPPLHLPLAGPDVVTRPRDRSGPESPPSNRYAGDWSVC 360
+WPDPR P ++P++ PYLRPK QPPLHLPLA P+VVTRPR R GPESPPSNRYAGDWSVC
Sbjct: 599 SWPDPRLPRQSPDVAPYLRPKRQPPLHLPLADPEVVTRPRGRGGPESPPSNRYAGDWSVC 658
Query: 361 GRDFLPCGRDFLPGPDYDHXXXXXXXXXXXXXXXXXXATDFEDDFEAPFNPHLNLKDFDA 540
GRDFLPCGRDFL GPDYDH DFEDDF+APFNPHLNLKDFDA
Sbjct: 659 GRDFLPCGRDFLSGPDYDHVTGSDSEDEDEEVGEPRVTGDFEDDFDAPFNPHLNLKDFDA 718
Query: 541 LILDLERELSKQINVCL 591
LILDLERELSKQINVCL
Sbjct: 719 LILDLERELSKQINVCL 735
>ref|NP_115560.1| rho GTPase-activating protein SYDE2 [Homo sapiens].
Length = 1194
Score = 122 bits (305), Expect = 1e-27
Identities = 89/225 (39%), Positives = 112/225 (49%), Gaps = 34/225 (15%)
Frame = +1
Query: 1 VSSFHAHNRMTPQNLAVCFGPVLLPARQTPT--RPRIRSSGPGLSNAVDFKRHIEVLHYL 174
V+S+H N+MT QNLAVCFGPVLL RQ P+ R+ + L++A+DFK+HIEVLHYL
Sbjct: 964 VASYHEVNKMTCQNLAVCFGPVLLSQRQEPSTHNNRVFTDSEELASALDFKKHIEVLHYL 1023
Query: 175 LQAWPDPRRP---------PEAPELVPYLRPKPQPPLHLPLAGPDV--VTRPRDRSGPES 321
LQ WP R PE + YLR K + P L L+G D V RPR ++ +S
Sbjct: 1024 LQLWPVQRLTVKKSTDNLFPEQKSSLNYLRQKKERPHMLNLSGTDSSGVLRPR-QNRLDS 1082
Query: 322 PPSNRYAGDWSVCGRDFLPCGRDFLPGPDYDHXXXXXXXXXXXXXXXXXXATDFEDDF-- 495
P SNRYAGDWS CG ++ ++ L DYD E
Sbjct: 1083 PLSNRYAGDWSSCGENYFLNTKENLNDVDYDDVPSEDRKIGENYSKMDGPEVMIEQPIPM 1142
Query: 496 --EAPFNPHL-------------NLKD----FDALILDLERELSK 573
E F +L NLKD D LI +LEREL+K
Sbjct: 1143 SKECTFQTYLTMQTVESTVDRKNNLKDLQESIDTLIGNLERELNK 1187
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 71,681,865
Number of extensions: 2240986
Number of successful extensions: 11310
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 11022
Number of HSP's successfully gapped: 2
Length of query: 538
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 431
Effective length of database: 14,770,016
Effective search space: 6365876896
Effective search space used: 6365876896
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA OVR01_0030_G03
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVR01_0030_G03
(1616 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_541986.2| PREDICTED: similar to synapse defective 1, Rho ... 352 8e-97
Alignment gi|XP_547305.2| PREDICTED: similar to synapse defective 1, Rho ... 115 9e-26
>ref|XP_541986.2| PREDICTED: similar to synapse defective 1, Rho GTPase, homolog 1
[Canis familiaris].
Length = 735
Score = 352 bits (902), Expect = 8e-97
Identities = 166/197 (84%), Positives = 169/197 (85%)
Frame = +1
Query: 1 VSSFHAHNRMTPQNLAVCFGPVLLPARQTPTRPRIRSSGPGLSNAVDFKRHIEVLHYLLQ 180
VSSFHAHNRMTPQNLAVCFGPVLLPARQ P+RPRIRSSGPGLSNAVDFKRHIEVLHYLLQ
Sbjct: 539 VSSFHAHNRMTPQNLAVCFGPVLLPARQAPSRPRIRSSGPGLSNAVDFKRHIEVLHYLLQ 598
Query: 181 AWPDPRRPPEAPELVPYLRPKPQPPLHLPLAGPDVVTRPRDRSGPESPPSNRYAGDWSVC 360
AWPDPRRPPE P L PYLRPK QPPLHLPLAGP+VV RPR R GPESPPSNRYAGDWSVC
Sbjct: 599 AWPDPRRPPEPPGLAPYLRPKRQPPLHLPLAGPEVVARPRGRGGPESPPSNRYAGDWSVC 658
Query: 361 GRDFLPCGRDFLPGPDYDHXXXXXXXXXXXXXXXXXXATDFEDDFEAPFNPHLNLKDFDA 540
GRDFLPCGRDFL GPDYDH A DF+DDFEAPFNPHLNLKDFDA
Sbjct: 659 GRDFLPCGRDFLSGPDYDHVTGGYSEDEDEEAGEPAGAADFDDDFEAPFNPHLNLKDFDA 718
Query: 541 LILDLERELSKQINVCL 591
LILDLERELSKQINVCL
Sbjct: 719 LILDLERELSKQINVCL 735
>ref|XP_547305.2| PREDICTED: similar to synapse defective 1, Rho GTPase, homolog 1
[Canis familiaris].
Length = 1162
Score = 115 bits (289), Expect = 9e-26
Identities = 69/150 (46%), Positives = 88/150 (58%), Gaps = 12/150 (8%)
Frame = +1
Query: 1 VSSFHAHNRMTPQNLAVCFGPVLLPARQTPT--RPRIRSSGPGLSNAVDFKRHIEVLHYL 174
V+S+H N+MT QNLAVCFGPVLL RQ + R+ + L++A+DFK+HIEVLHYL
Sbjct: 932 VASYHEVNKMTCQNLAVCFGPVLLSQRQETSTHNNRVFTDSEELASALDFKKHIEVLHYL 991
Query: 175 LQAWPDPRRP---------PEAPELVPYLRPKPQPPLHLPLAGPDVVTRPRDR-SGPESP 324
LQ WP R PE + YLR K + P L L+G D R R + +SP
Sbjct: 992 LQLWPVQRLTVKESTDNLFPEQKSSLNYLRRKKERPCMLNLSGTDSSRILRSRQTRLDSP 1051
Query: 325 PSNRYAGDWSVCGRDFLPCGRDFLPGPDYD 414
SNRYAGDWS CG ++ ++ L DYD
Sbjct: 1052 VSNRYAGDWSSCGENYFLNTKENLNDGDYD 1081
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 73,207,154
Number of extensions: 2297961
Number of successful extensions: 11583
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 11323
Number of HSP's successfully gapped: 2
Length of query: 538
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 430
Effective length of database: 15,274,216
Effective search space: 6567912880
Effective search space used: 6567912880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVR01_0030_G03
(1616 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_082151.1| rho GTPase-activating protein SYDE1 [Mus muscul... 330 2e-90
Alignment gi|NP_001159536.1| synapse defective 1, Rho GTPase, homolog 2 [... 114 3e-25
>ref|NP_082151.1| rho GTPase-activating protein SYDE1 [Mus musculus].
Length = 737
Score = 330 bits (846), Expect = 2e-90
Identities = 155/199 (77%), Positives = 167/199 (83%), Gaps = 2/199 (1%)
Frame = +1
Query: 1 VSSFHAHNRMTPQNLAVCFGPVLLPARQTPTRPRIRSSGPGLSNAVDFKRHIEVLHYLLQ 180
VSSFH HNRMTPQNLAVCFGPVLLPARQTP+RPR+RSSGPG+++AVDFKRHIEVLHYLLQ
Sbjct: 539 VSSFHTHNRMTPQNLAVCFGPVLLPARQTPSRPRLRSSGPGVTSAVDFKRHIEVLHYLLQ 598
Query: 181 AWPDPRRPPEAPE--LVPYLRPKPQPPLHLPLAGPDVVTRPRDRSGPESPPSNRYAGDWS 354
+WPD RRP + P+ + PYLRPK QPPLHLPLAGP+VVTRPR R GPESPPSNRYAGDWS
Sbjct: 599 SWPDTRRPSDTPDGAVAPYLRPKRQPPLHLPLAGPEVVTRPRGRGGPESPPSNRYAGDWS 658
Query: 355 VCGRDFLPCGRDFLPGPDYDHXXXXXXXXXXXXXXXXXXATDFEDDFEAPFNPHLNLKDF 534
VCG D LPCGRDFL GPDYDH TDFED+F+APFNPHLNLKDF
Sbjct: 659 VCGGDLLPCGRDFLSGPDYDHVTGSDSEEDDDETGEPRGTTDFEDEFDAPFNPHLNLKDF 718
Query: 535 DALILDLERELSKQINVCL 591
DALILDLERELSKQINVCL
Sbjct: 719 DALILDLERELSKQINVCL 737
>ref|NP_001159536.1| synapse defective 1, Rho GTPase, homolog 2 [Mus musculus].
Length = 1314
Score = 114 bits (284), Expect = 3e-25
Identities = 69/150 (46%), Positives = 86/150 (57%), Gaps = 12/150 (8%)
Frame = +1
Query: 1 VSSFHAHNRMTPQNLAVCFGPVLLPARQTPT--RPRIRSSGPGLSNAVDFKRHIEVLHYL 174
V+S+H N+MT QNLAVCFGPVLL RQ + R+ + L++A+DFK+HIEVLHYL
Sbjct: 1085 VASYHEVNKMTCQNLAVCFGPVLLNQRQEASTHNNRVFTDSEELASALDFKKHIEVLHYL 1144
Query: 175 LQAWPDPRRPPEAP---------ELVPYLRPKPQPPLHLPLAGPDVVTRPRDRSGP-ESP 324
LQ WP R + P + YLR K + P L L+GPD R R +SP
Sbjct: 1145 LQLWPVQRLTVKEPRDSLCLEQSSSLNYLRRKKERPCVLNLSGPDSSGVLRTRQARLDSP 1204
Query: 325 PSNRYAGDWSVCGRDFLPCGRDFLPGPDYD 414
SNRYAGDWS CG + R + DYD
Sbjct: 1205 LSNRYAGDWSSCGESYSLNTRGNVKNLDYD 1234
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 60,128,636
Number of extensions: 1840859
Number of successful extensions: 8923
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8602
Number of HSP's successfully gapped: 2
Length of query: 538
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 432
Effective length of database: 12,433,743
Effective search space: 5371376976
Effective search space used: 5371376976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVR01_0030_G03
(1616 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003123475.1| PREDICTED: rho GTPase-activating protein SYD... 379 e-105
Alignment gi|XP_003123474.1| PREDICTED: rho GTPase-activating protein SYD... 379 e-105
Alignment gi|XP_001928259.2| PREDICTED: rho GTPase-activating protein SYD... 115 5e-26
>ref|XP_003123475.1| PREDICTED: rho GTPase-activating protein SYDE1 isoform 2 [Sus
scrofa].
Length = 668
Score = 379 bits (972), Expect = e-105
Identities = 179/197 (90%), Positives = 179/197 (90%)
Frame = +1
Query: 1 VSSFHAHNRMTPQNLAVCFGPVLLPARQTPTRPRIRSSGPGLSNAVDFKRHIEVLHYLLQ 180
VSSFHAHNRMTPQNLAVCFGPVLLPARQTPTRPRIRSSGPGLSNAVDFKRHIEVLHYLLQ
Sbjct: 472 VSSFHAHNRMTPQNLAVCFGPVLLPARQTPTRPRIRSSGPGLSNAVDFKRHIEVLHYLLQ 531
Query: 181 AWPDPRRPPEAPELVPYLRPKPQPPLHLPLAGPDVVTRPRDRSGPESPPSNRYAGDWSVC 360
AWPDPRRPPEAPELVPYLRPKPQPPLHLPLAGPDVVTRPRDRSGPESPPSNRYAGDWSVC
Sbjct: 532 AWPDPRRPPEAPELVPYLRPKPQPPLHLPLAGPDVVTRPRDRSGPESPPSNRYAGDWSVC 591
Query: 361 GRDFLPCGRDFLPGPDYDHXXXXXXXXXXXXXXXXXXATDFEDDFEAPFNPHLNLKDFDA 540
GRDFLPCGRDFLPGPDYDH ATDFEDDFEAPFNPHLNLKDFDA
Sbjct: 592 GRDFLPCGRDFLPGPDYDHVTGSDSEDEEEVGGETTGATDFEDDFEAPFNPHLNLKDFDA 651
Query: 541 LILDLERELSKQINVCL 591
LILDLERELSKQINVCL
Sbjct: 652 LILDLERELSKQINVCL 668
>ref|XP_003123474.1| PREDICTED: rho GTPase-activating protein SYDE1 isoform 1 [Sus
scrofa].
Length = 735
Score = 379 bits (972), Expect = e-105
Identities = 179/197 (90%), Positives = 179/197 (90%)
Frame = +1
Query: 1 VSSFHAHNRMTPQNLAVCFGPVLLPARQTPTRPRIRSSGPGLSNAVDFKRHIEVLHYLLQ 180
VSSFHAHNRMTPQNLAVCFGPVLLPARQTPTRPRIRSSGPGLSNAVDFKRHIEVLHYLLQ
Sbjct: 539 VSSFHAHNRMTPQNLAVCFGPVLLPARQTPTRPRIRSSGPGLSNAVDFKRHIEVLHYLLQ 598
Query: 181 AWPDPRRPPEAPELVPYLRPKPQPPLHLPLAGPDVVTRPRDRSGPESPPSNRYAGDWSVC 360
AWPDPRRPPEAPELVPYLRPKPQPPLHLPLAGPDVVTRPRDRSGPESPPSNRYAGDWSVC
Sbjct: 599 AWPDPRRPPEAPELVPYLRPKPQPPLHLPLAGPDVVTRPRDRSGPESPPSNRYAGDWSVC 658
Query: 361 GRDFLPCGRDFLPGPDYDHXXXXXXXXXXXXXXXXXXATDFEDDFEAPFNPHLNLKDFDA 540
GRDFLPCGRDFLPGPDYDH ATDFEDDFEAPFNPHLNLKDFDA
Sbjct: 659 GRDFLPCGRDFLPGPDYDHVTGSDSEDEEEVGGETTGATDFEDDFEAPFNPHLNLKDFDA 718
Query: 541 LILDLERELSKQINVCL 591
LILDLERELSKQINVCL
Sbjct: 719 LILDLERELSKQINVCL 735
>ref|XP_001928259.2| PREDICTED: rho GTPase-activating protein SYDE2 [Sus scrofa].
Length = 1084
Score = 115 bits (289), Expect = 5e-26
Identities = 88/225 (39%), Positives = 109/225 (48%), Gaps = 34/225 (15%)
Frame = +1
Query: 1 VSSFHAHNRMTPQNLAVCFGPVLLPARQTPT--RPRIRSSGPGLSNAVDFKRHIEVLHYL 174
V+S+ N+MT QNLAVCFGPVLL RQ + R+ + L+ A+DFK+HIEVLHYL
Sbjct: 854 VASYQDVNKMTCQNLAVCFGPVLLSQRQETSSHNNRVFTDSEELATALDFKKHIEVLHYL 913
Query: 175 LQAWPDPRRP---------PEAPELVPYLRPKPQPP--LHLPLAGPDVVTRPRDRSGPES 321
LQ WP R PE + YLR K + P L+L GP RPR + +S
Sbjct: 914 LQLWPVQRLAIKESADSLFPEQTSSLNYLRRKKERPHLLNLRGTGPCRALRPRP-TRLDS 972
Query: 322 PPSNRYAGDWSVCGRDFLPCGRDFLPGPDYDHXXXXXXXXXXXXXXXXXXATDFEDDFEA 501
P SNRYAGDWS CG D+L ++ L DYD + A
Sbjct: 973 PLSNRYAGDWSSCGEDYLLNTKEALRNVDYDDIPTEDRENAENRSKMYDPDIMMQQPAPA 1032
Query: 502 ----PFNPHL-------------NLKD----FDALILDLERELSK 573
PF +L NL+D D LI +LERELSK
Sbjct: 1033 SEGCPFQTYLTMQTAGSTVDRTVNLRDLQESIDTLIGNLERELSK 1077
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 45,663,244
Number of extensions: 1478376
Number of successful extensions: 7847
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7604
Number of HSP's successfully gapped: 3
Length of query: 538
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 434
Effective length of database: 8,754,644
Effective search space: 3799515496
Effective search space used: 3799515496
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVR01_0030_G03
(1616 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 2783 0.0
>Sscrofa_Chr02
|| Length = 162569375
Score = 2783 bits (1404), Expect = 0.0
Identities = 1407/1408 (99%)
Strand = Plus / Minus
Query: 188 cagatccccgcaggcccccagaggctccggagttagtcccgtacctgcggcccaaaccac 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62009464 cagatccccgcaggcccccagaggctccggagttagtcccgtacctgcggcccaaaccac 62009405
Query: 248 agccgccgctgcacttgccgctagcgggcccggatgtggtgactcggcctcgcgaccgaa 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62009404 agccgccgctgcacttgccgctagcgggcccggatgtggtgactcggcctcgcgaccgaa 62009345
Query: 308 gcggccccgagagccccccgagcaatcgctacgccggtgactggagcgtttgcgggaggg 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62009344 gcggccccgagagccccccgagcaatcgctacgccggtgactggagcgtttgcgggaggg 62009285
Query: 368 acttcctgccctgtgggcgggacttcctgcccgggccagactacgaccacgtgacgggca 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62009284 acttcctgccctgtgggcgggacttcctgcccgggccagactacgaccacgtgacgggca 62009225
Query: 428 gcgacagcgaagatgaggaagaagtgggtggtgagacgacaggcgccaccgacttcgaag 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62009224 gcgacagcgaagatgaggaagaagtgggtggtgagacgacaggcgccaccgacttcgaag 62009165
Query: 488 acgatttcgaggcgcccttcaacccgcacctgaacctcaaagactttgatgccctcatcc 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62009164 acgatttcgaggcgcccttcaacccgcacctgaacctcaaagactttgatgccctcatcc 62009105
Query: 548 tggacctggagagagagctctccaagcagatcaacgtgtgcctctgagccgggcggggct 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62009104 tggacctggagagagagctctccaagcagatcaacgtgtgcctctgagccgggcggggct 62009045
Query: 608 ggaccccatcactaaggccgggctcctggctgccagggtggtaccctaccgatctagggg 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62009044 ggaccccatcactaaggccgggctcctggctgccagggtggtaccctaccgatctagggg 62008985
Query: 668 tgccagacttgtagctcaggcctagctcctggttcttgggaagttacctagaggccagcc 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62008984 tgccagacttgtagctcaggcctagctcctggttcttgggaagttacctagaggccagcc 62008925
Query: 728 atcccgttgatgagaatcattcctcgtttccagtgctcaatatttggacactggttgcga 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62008924 atcccgttgatgagaatcattcctcgtttccagtgctcaatatttggacactggttgcga 62008865
Query: 788 agaccagggtctggggattttagggaccatctactgtggccattttttctgagtacaaag 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62008864 agaccagggtctggggattttagggaccatctactgtggccattttttctgagtacaaag 62008805
Query: 848 ggctttctgccgaggctgccaaaaggcagttctgcttgcagggctggcctctcttgcctc 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62008804 ggctttctgccgaggctgccaaaaggcagttctgcttgcagggctggcctctcttgcctc 62008745
Query: 908 tccttggccagggttaacaccagttactgtgagcatcaccctgggatggtgagacaccca 967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62008744 tccttggccagggttaacaccagttactgtgagcatcaccctgggatggtgagacaccca 62008685
Query: 968 cccccaaagacagtcctcttgctgctgccaaccaaatcagtattagctttgagcactgca 1027
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62008684 cccccaaagacagtcctcttgctgctgccaaccaaatcagtattagctttgagcactgca 62008625
Query: 1028 ctctgcttctccttcggcgggcccaaggactatcatgagatgctgtctgaggcagggttc 1087
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62008624 ctctgcttctccttcggcgggcccaaggactatcatgagatgctgtctgaggcagggttc 62008565
Query: 1088 gggagagcccccctcccaagctctggctggagaggggcagcctggggcttatataggaaa 1147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62008564 gggagagcccccctcccaagctctggctggagaggggcagcctggggcttatataggaaa 62008505
Query: 1148 acagctggttttcccactgcttttttctagagaaaaatcccacaattgcctcaaaccagc 1207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62008504 acagctggttttcccactgcttttttctagagaaaaatcccacaattgcctcaaaccagc 62008445
Query: 1208 aaatggagacagcagagtctggcccttcccctccccaactcttcctccccattcctgaag 1267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62008444 aaatggagacagcagagtctggcccttcccctccccaactcttcctccccattcctgaag 62008385
Query: 1268 aaactgagcacttatatgacctccctttaggaggggccccacctgaagtgtcaggctggg 1327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62008384 aaactgagcacttatatgacctccctttaggaggggccccacctgaagtgtcaggctggg 62008325
Query: 1328 agcactttggtacggaacatatttattgcctccatgcatgtgtgtctgtgtgtgaggact 1387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62008324 agcactttggtacggaacatatttattgcctccatgcatgtgtgtctgtgtgtgaggact 62008265
Query: 1388 agtgtgtatggacatgtctagagtaagcatgtggggctttcagggaccacagagcgggga 1447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62008264 agtgtgtatggacatgtctagagtaagcatgtggggctttcagggaccacagagcgggga 62008205
Query: 1448 aagagtttgcagtgccggggcaccctgaaatccccatagtggtgcctcagtgggccccag 1507
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62008204 aagagtttgcagtgccagggcaccctgaaatccccatagtggtgcctcagtgggccccag 62008145
Query: 1508 aattccagtgggagagtagggccccctctgtctcctctctctttccctcacttccatctt 1567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62008144 aattccagtgggagagtagggccccctctgtctcctctctctttccctcacttccatctt 62008085
Query: 1568 tgtggacaataaaccaatatgcacaggt 1595
||||||||||||||||||||||||||||
Sbjct: 62008084 tgtggacaataaaccaatatgcacaggt 62008057
Score = 377 bits (190), Expect = e-101
Identities = 190/190 (100%)
Strand = Plus / Minus
Query: 1 gtctcctccttccacgcccacaaccgcatgaccccgcagaacctggcagtgtgcttcggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62009927 gtctcctccttccacgcccacaaccgcatgaccccgcagaacctggcagtgtgcttcggt 62009868
Query: 61 cccgtgctgctgccggcgcgccagacacccaccaggccccgcatccgcagctctggccca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62009867 cccgtgctgctgccggcgcgccagacacccaccaggccccgcatccgcagctctggccca 62009808
Query: 121 ggcctctccaacgctgtggacttcaagcgccacatcgaggtgctgcactacctgcttcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62009807 ggcctctccaacgctgtggacttcaagcgccacatcgaggtgctgcactacctgcttcag 62009748
Query: 181 gcctggccag 190
||||||||||
Sbjct: 62009747 gcctggccag 62009738
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 45,186,719
Number of extensions: 672
Number of successful extensions: 672
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 672
Number of HSP's successfully gapped: 2
Length of query: 1616
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1594
Effective length of database: 2,808,408,574
Effective search space: 4476603266956
Effective search space used: 4476603266956
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)