Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVR01_0084_G10
(1120 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535894.1| PREDICTED: similar to 60S acidic ribosomal prot... 528 e-150
Alignment gi|XP_858251.1| PREDICTED: similar to 60S acidic ribosomal prot... 528 e-150
Alignment gi|XP_858205.1| PREDICTED: similar to 60S acidic ribosomal prot... 528 e-150
Alignment gi|XP_849185.1| PREDICTED: similar to 60S acidic ribosomal prot... 528 e-150
Alignment gi|XP_863145.1| PREDICTED: similar to 60S acidic ribosomal prot... 528 e-150
Alignment gi|XP_863120.1| PREDICTED: similar to 60S acidic ribosomal prot... 528 e-150
Alignment gi|XP_863097.1| PREDICTED: similar to 60S acidic ribosomal prot... 528 e-150
Alignment gi|XP_863073.1| PREDICTED: similar to 60S acidic ribosomal prot... 528 e-150
Alignment gi|XP_850994.1| PREDICTED: similar to 60S acidic ribosomal prot... 528 e-150
Alignment gi|XP_863019.1| PREDICTED: similar to 60S acidic ribosomal prot... 491 e-139
>ref|XP_535894.1| PREDICTED: similar to 60S acidic ribosomal protein P0 (L10E) isoform
1 [Canis familiaris].
Length = 317
Score = 528 bits (1361), Expect = e-150
Identities = 277/318 (87%), Positives = 277/318 (87%)
Frame = +2
Query: 74 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 253
MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 254 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 433
MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP PCE
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 434 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 613
VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 614 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 793
SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240
Query: 794 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVXXXXXXXXXXXXXXXXXXAPAXXX 973
IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV APA
Sbjct: 241 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV-AAAPVAAATTAAPAAAAAPAKVE 299
Query: 974 XXXXXXXXXXXMGFGLFD 1027
MGFGLFD
Sbjct: 300 AKEESEESDEDMGFGLFD 317
>ref|XP_858251.1| PREDICTED: similar to 60S acidic ribosomal protein P0 (L10E) isoform
7 [Canis familiaris].
Length = 317
Score = 528 bits (1361), Expect = e-150
Identities = 277/318 (87%), Positives = 277/318 (87%)
Frame = +2
Query: 74 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 253
MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 254 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 433
MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP PCE
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 434 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 613
VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 614 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 793
SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240
Query: 794 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVXXXXXXXXXXXXXXXXXXAPAXXX 973
IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV APA
Sbjct: 241 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV-AAAPVAAATTAAPAAAAAPAKVE 299
Query: 974 XXXXXXXXXXXMGFGLFD 1027
MGFGLFD
Sbjct: 300 AKEESEESDEDMGFGLFD 317
>ref|XP_858205.1| PREDICTED: similar to 60S acidic ribosomal protein P0 (L10E) isoform
6 [Canis familiaris].
Length = 317
Score = 528 bits (1361), Expect = e-150
Identities = 277/318 (87%), Positives = 277/318 (87%)
Frame = +2
Query: 74 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 253
MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 254 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 433
MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP PCE
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 434 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 613
VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 614 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 793
SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240
Query: 794 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVXXXXXXXXXXXXXXXXXXAPAXXX 973
IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV APA
Sbjct: 241 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV-AAAPVAAATTAAPAAAAAPAKVE 299
Query: 974 XXXXXXXXXXXMGFGLFD 1027
MGFGLFD
Sbjct: 300 AKEESEESDEDMGFGLFD 317
>ref|XP_849185.1| PREDICTED: similar to 60S acidic ribosomal protein P0 (L10E) isoform
2 [Canis familiaris].
Length = 317
Score = 528 bits (1361), Expect = e-150
Identities = 277/318 (87%), Positives = 277/318 (87%)
Frame = +2
Query: 74 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 253
MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 254 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 433
MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP PCE
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 434 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 613
VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 614 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 793
SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240
Query: 794 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVXXXXXXXXXXXXXXXXXXAPAXXX 973
IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV APA
Sbjct: 241 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV-AAAPVAAATTAAPAAAAAPAKVE 299
Query: 974 XXXXXXXXXXXMGFGLFD 1027
MGFGLFD
Sbjct: 300 AKEESEESDEDMGFGLFD 317
>ref|XP_863145.1| PREDICTED: similar to 60S acidic ribosomal protein P0 (L10E) isoform
14 [Canis familiaris].
Length = 317
Score = 528 bits (1361), Expect = e-150
Identities = 277/318 (87%), Positives = 277/318 (87%)
Frame = +2
Query: 74 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 253
MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 254 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 433
MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP PCE
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 434 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 613
VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 614 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 793
SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240
Query: 794 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVXXXXXXXXXXXXXXXXXXAPAXXX 973
IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV APA
Sbjct: 241 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV-AAAPVAAATTAAPAAAAAPAKVE 299
Query: 974 XXXXXXXXXXXMGFGLFD 1027
MGFGLFD
Sbjct: 300 AKEESEESDEDMGFGLFD 317
>ref|XP_863120.1| PREDICTED: similar to 60S acidic ribosomal protein P0 (L10E) isoform
13 [Canis familiaris].
Length = 317
Score = 528 bits (1361), Expect = e-150
Identities = 277/318 (87%), Positives = 277/318 (87%)
Frame = +2
Query: 74 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 253
MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 254 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 433
MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP PCE
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 434 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 613
VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 614 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 793
SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240
Query: 794 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVXXXXXXXXXXXXXXXXXXAPAXXX 973
IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV APA
Sbjct: 241 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV-AAAPVAAATTAAPAAAAAPAKVE 299
Query: 974 XXXXXXXXXXXMGFGLFD 1027
MGFGLFD
Sbjct: 300 AKEESEESDEDMGFGLFD 317
>ref|XP_863097.1| PREDICTED: similar to 60S acidic ribosomal protein P0 (L10E) isoform
12 [Canis familiaris].
Length = 317
Score = 528 bits (1361), Expect = e-150
Identities = 277/318 (87%), Positives = 277/318 (87%)
Frame = +2
Query: 74 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 253
MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 254 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 433
MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP PCE
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 434 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 613
VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 614 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 793
SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240
Query: 794 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVXXXXXXXXXXXXXXXXXXAPAXXX 973
IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV APA
Sbjct: 241 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV-AAAPVAAATTAAPAAAAAPAKVE 299
Query: 974 XXXXXXXXXXXMGFGLFD 1027
MGFGLFD
Sbjct: 300 AKEESEESDEDMGFGLFD 317
>ref|XP_863073.1| PREDICTED: similar to 60S acidic ribosomal protein P0 (L10E) isoform
11 [Canis familiaris].
Length = 317
Score = 528 bits (1361), Expect = e-150
Identities = 277/318 (87%), Positives = 277/318 (87%)
Frame = +2
Query: 74 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 253
MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 254 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 433
MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP PCE
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 434 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 613
VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 614 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 793
SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240
Query: 794 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVXXXXXXXXXXXXXXXXXXAPAXXX 973
IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV APA
Sbjct: 241 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV-AAAPVAAATTAAPAAAAAPAKVE 299
Query: 974 XXXXXXXXXXXMGFGLFD 1027
MGFGLFD
Sbjct: 300 AKEESEESDEDMGFGLFD 317
>ref|XP_850994.1| PREDICTED: similar to 60S acidic ribosomal protein P0 (L10E) isoform
2 [Canis familiaris].
Length = 317
Score = 528 bits (1361), Expect = e-150
Identities = 277/318 (87%), Positives = 277/318 (87%)
Frame = +2
Query: 74 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 253
MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 254 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 433
MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP PCE
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 434 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 613
VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 614 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 793
SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240
Query: 794 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVXXXXXXXXXXXXXXXXXXAPAXXX 973
IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV APA
Sbjct: 241 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV-AAAPVAAATTAAPAAAAAPAKVE 299
Query: 974 XXXXXXXXXXXMGFGLFD 1027
MGFGLFD
Sbjct: 300 AKEESEESDEDMGFGLFD 317
>ref|XP_863019.1| PREDICTED: similar to 60S acidic ribosomal protein P0 (L10E) isoform
9 [Canis familiaris].
Length = 324
Score = 491 bits (1263), Expect = e-139
Identities = 259/300 (86%), Positives = 259/300 (86%)
Frame = +2
Query: 128 QLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPALEKL 307
QLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPALEKL
Sbjct: 26 QLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPALEKL 85
Query: 308 LPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCEVTVPAQNTGLGPEKTSFF 487
LPHIRGNVGFVFTKEDLTEIRDMLLANKVP PCEVTVPAQNTGLGPEKTSFF
Sbjct: 86 LPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFF 145
Query: 488 QALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSI 667
QALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSI
Sbjct: 146 QALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSI 205
Query: 668 YNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYT 847
YNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYT
Sbjct: 206 YNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYT 265
Query: 848 FPLAEKVKAFLADPSAFVXXXXXXXXXXXXXXXXXXAPAXXXXXXXXXXXXXXMGFGLFD 1027
FPLAEKVKAFLADPSAFV APA MGFGLFD
Sbjct: 266 FPLAEKVKAFLADPSAFV-AAAPVAAATTAAPAAAAAPAKVEAKEESEESDEDMGFGLFD 324
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,018,884
Number of extensions: 1218665
Number of successful extensions: 5500
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 5458
Number of HSP's successfully gapped: 32
Length of query: 373
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 269
Effective length of database: 15,407,560
Effective search space: 4144633640
Effective search space used: 4144633640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVR01_0084_G10
(1120 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000993.1| 60S acidic ribosomal protein P0 [Homo sapiens]. 528 e-150
Alignment gi|NP_444505.1| 60S acidic ribosomal protein P0 [Homo sapiens]. 528 e-150
Alignment gi|NP_057267.2| mRNA turnover protein 4 homolog [Homo sapiens]. 52 1e-06
>ref|NP_000993.1| 60S acidic ribosomal protein P0 [Homo sapiens].
Length = 317
Score = 528 bits (1360), Expect = e-150
Identities = 276/318 (86%), Positives = 277/318 (87%)
Frame = +2
Query: 74 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 253
MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 254 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 433
MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP PCE
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 434 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 613
VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 614 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 793
SPFSFGL+IQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181 SPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240
Query: 794 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVXXXXXXXXXXXXXXXXXXAPAXXX 973
IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV APA
Sbjct: 241 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV-AAAPVAAATTAAPAAAAAPAKVE 299
Query: 974 XXXXXXXXXXXMGFGLFD 1027
MGFGLFD
Sbjct: 300 AKEESEESDEDMGFGLFD 317
>ref|NP_444505.1| 60S acidic ribosomal protein P0 [Homo sapiens].
Length = 317
Score = 528 bits (1360), Expect = e-150
Identities = 276/318 (86%), Positives = 277/318 (87%)
Frame = +2
Query: 74 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 253
MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 254 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 433
MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP PCE
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 434 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 613
VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 614 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 793
SPFSFGL+IQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181 SPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240
Query: 794 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVXXXXXXXXXXXXXXXXXXAPAXXX 973
IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV APA
Sbjct: 241 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV-AAAPVAAATTAAPAAAAAPAKVE 299
Query: 974 XXXXXXXXXXXMGFGLFD 1027
MGFGLFD
Sbjct: 300 AKEESEESDEDMGFGLFD 317
>ref|NP_057267.2| mRNA turnover protein 4 homolog [Homo sapiens].
Length = 239
Score = 52.0 bits (123), Expect = 1e-06
Identities = 45/193 (23%), Positives = 81/193 (41%), Gaps = 5/193 (2%)
Frame = +2
Query: 101 KSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHL 280
K N ++ + +D Y FI N+ + +++ IR + + + GKN +M A+
Sbjct: 23 KQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAWKHSRM-FFGKNKVMMVALGRSP 81
Query: 281 --ENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCEVTVPAQN 454
E L ++ +RG VG +FT E+ + K TV
Sbjct: 82 SDEYKDNLHQVSKRLRGEVGLLFTNRTKEEVNEWF--TKYTEMDYARAGNKAAFTVSLDP 139
Query: 455 TGLGPEKTSF---FQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFS 625
L S + LG+ T + RG + +LSD ++ K GD + +A +L +
Sbjct: 140 GPLEQFPHSMEPQLRQLGLPTALKRGVVTLLSDYEVCKEGDVLTPEQARVLKLFGYEMAE 199
Query: 626 FGLIIQQVFDNGS 664
F + I+ ++D+ S
Sbjct: 200 FKVTIKYMWDSQS 212
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,334,427
Number of extensions: 1201820
Number of successful extensions: 5364
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5321
Number of HSP's successfully gapped: 3
Length of query: 373
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 269
Effective length of database: 14,868,908
Effective search space: 3999736252
Effective search space used: 3999736252
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA OVR01_0084_G10
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVR01_0084_G10
(1120 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001012700.1| 60S acidic ribosomal protein P0 [Bos taurus]. 532 e-151
>ref|NP_001012700.1| 60S acidic ribosomal protein P0 [Bos taurus].
Length = 318
Score = 532 bits (1371), Expect = e-151
Identities = 276/318 (86%), Positives = 277/318 (87%)
Frame = +2
Query: 74 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 253
MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 254 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 433
MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP PCE
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 434 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 613
VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 614 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 793
SPFSFGL+IQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181 SPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240
Query: 794 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVXXXXXXXXXXXXXXXXXXAPAXXX 973
IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV APA
Sbjct: 241 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAAPAAAPAATTAAPAKVE 300
Query: 974 XXXXXXXXXXXMGFGLFD 1027
MGFGLFD
Sbjct: 301 AKEESEESDEDMGFGLFD 318
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,633,831
Number of extensions: 1243571
Number of successful extensions: 5589
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5533
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 269
Effective length of database: 14,240,222
Effective search space: 3830619718
Effective search space used: 3830619718
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVR01_0084_G10
(1120 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031501.1| 60S acidic ribosomal protein P0 [Mus musculus]. 521 e-148
Alignment gi|XP_996602.1| PREDICTED: 60S acidic ribosomal protein P0-like... 517 e-147
Alignment gi|XP_003086742.1| PREDICTED: 60S acidic ribosomal protein P0-l... 517 e-147
Alignment gi|XP_001480610.1| PREDICTED: mRNA turnover protein 4 homolog i... 50 2e-06
Alignment gi|XP_001004798.1| PREDICTED: mRNA turnover protein 4 homolog [... 50 4e-06
>ref|NP_031501.1| 60S acidic ribosomal protein P0 [Mus musculus].
Length = 317
Score = 521 bits (1341), Expect = e-148
Identities = 272/318 (85%), Positives = 274/318 (86%)
Frame = +2
Query: 74 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 253
MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 254 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 433
MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP PCE
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 434 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 613
VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 614 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 793
SPFSFGLIIQQVFDNGSIYNPEVLDITE+ LHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181 SPFSFGLIIQQVFDNGSIYNPEVLDITEQALHSRFLEGVRNVASVCLQIGYPTVASVPHS 240
Query: 794 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVXXXXXXXXXXXXXXXXXXAPAXXX 973
IINGYKRVLALSVET+YTFPL EKVKAFLADPSAF APA
Sbjct: 241 IINGYKRVLALSVETEYTFPLTEKVKAFLADPSAFA-AAAPAAAATTAAPAAAAAPAKAE 299
Query: 974 XXXXXXXXXXXMGFGLFD 1027
MGFGLFD
Sbjct: 300 AKEESEESDEDMGFGLFD 317
>ref|XP_996602.1| PREDICTED: 60S acidic ribosomal protein P0-like [Mus musculus].
Length = 317
Score = 517 bits (1331), Expect = e-147
Identities = 271/318 (85%), Positives = 273/318 (85%)
Frame = +2
Query: 74 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 253
MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 254 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 433
MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP PCE
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 434 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 613
VTVPAQNTGLGPEKTSFFQALGITTKIS GTIEILSDVQLIKTGDKV ASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISSGTIEILSDVQLIKTGDKVRASEATLLNMLNI 180
Query: 614 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 793
SPFSFGLIIQQVFDNGSIYNPEVLDITE+ LHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181 SPFSFGLIIQQVFDNGSIYNPEVLDITEQALHSRFLEGVRNVASVCLQIGYPTVASVPHS 240
Query: 794 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVXXXXXXXXXXXXXXXXXXAPAXXX 973
IINGYKRVLALSVET+YTFPLAEKVKAFLADPSAF APA
Sbjct: 241 IINGYKRVLALSVETEYTFPLAEKVKAFLADPSAFA-AAAPAAAATTAAPAAAAAPAKAE 299
Query: 974 XXXXXXXXXXXMGFGLFD 1027
MGFGLFD
Sbjct: 300 AKEESEESDEDMGFGLFD 317
>ref|XP_003086742.1| PREDICTED: 60S acidic ribosomal protein P0-like [Mus musculus].
Length = 317
Score = 517 bits (1331), Expect = e-147
Identities = 271/318 (85%), Positives = 273/318 (85%)
Frame = +2
Query: 74 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 253
MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 254 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 433
MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP PCE
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 434 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 613
VTVPAQNTGLGPEKTSFFQALGITTKIS GTIEILSDVQLIKTGDKV ASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISSGTIEILSDVQLIKTGDKVRASEATLLNMLNI 180
Query: 614 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 793
SPFSFGLIIQQVFDNGSIYNPEVLDITE+ LHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181 SPFSFGLIIQQVFDNGSIYNPEVLDITEQALHSRFLEGVRNVASVCLQIGYPTVASVPHS 240
Query: 794 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVXXXXXXXXXXXXXXXXXXAPAXXX 973
IINGYKRVLALSVET+YTFPLAEKVKAFLADPSAF APA
Sbjct: 241 IINGYKRVLALSVETEYTFPLAEKVKAFLADPSAFA-AAAPAAAATTAAPAAAAAPAKAE 299
Query: 974 XXXXXXXXXXXMGFGLFD 1027
MGFGLFD
Sbjct: 300 AKEESEESDEDMGFGLFD 317
>ref|XP_001480610.1| PREDICTED: mRNA turnover protein 4 homolog isoform 2 [Mus
musculus].
Length = 239
Score = 50.4 bits (119), Expect = 2e-06
Identities = 43/190 (22%), Positives = 80/190 (42%), Gaps = 5/190 (2%)
Frame = +2
Query: 101 KSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHL 280
K N ++ + +D Y FI N+ + +++ IR + + + GKN +M A+
Sbjct: 23 KQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAWKHSRM-FFGKNKVMMVALGRSP 81
Query: 281 --ENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCEVTVPAQN 454
E L ++ +RG VG +FT E+ + K +TV
Sbjct: 82 SDEYKDDLHQVSKKLRGEVGLLFTNRTKEEVNEWF--TKYTEMDFARAGNKATLTVSLDP 139
Query: 455 TGLGPEKTSF---FQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFS 625
L S + LG+ T + +G + +LSD ++ K GD + +A +L +
Sbjct: 140 GPLKQFPHSMELQLRQLGLPTALEKGVVTLLSDYEVCKEGDVLTPEQARILKLFGYEMAE 199
Query: 626 FGLIIQQVFD 655
F + I+ ++D
Sbjct: 200 FKVTIKYMWD 209
>ref|XP_001004798.1| PREDICTED: mRNA turnover protein 4 homolog [Mus musculus].
Length = 239
Score = 49.7 bits (117), Expect = 4e-06
Identities = 43/190 (22%), Positives = 80/190 (42%), Gaps = 5/190 (2%)
Frame = +2
Query: 101 KSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHL 280
K N ++ + +D Y FI N+ + +++ IR + + + GKN +M A+
Sbjct: 23 KQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAWKHSRM-FFGKNKVMMVALGRSP 81
Query: 281 --ENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCEVTVPAQN 454
E L ++ +RG VG +FT E+ + K +TV
Sbjct: 82 SDEYKDDLHQVSKKLRGEVGLLFTNRTKEEVNEWF--TKYTEMDFARAGNKATLTVSLDP 139
Query: 455 TGLGPEKTSF---FQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFS 625
L S + LG+ T + +G + +LSD ++ K GD + +A +L +
Sbjct: 140 GPLKQFPHSMELQLRQLGLPTALEKGVVTLLSDYEVCKEGDVLTPEQARILKLFGDEMAE 199
Query: 626 FGLIIQQVFD 655
F + I+ ++D
Sbjct: 200 FKVTIKYMWD 209
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,826,654
Number of extensions: 1016602
Number of successful extensions: 4762
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4724
Number of HSP's successfully gapped: 5
Length of query: 373
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 270
Effective length of database: 12,523,851
Effective search space: 3381439770
Effective search space used: 3381439770
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVR01_0084_G10
(1120 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092068.1| 60S acidic ribosomal protein P0 [Sus scrofa]. 533 e-152
Alignment gi|NP_001230644.1| mRNA turnover 4 homolog [Sus scrofa]. 49 4e-06
>ref|NP_001092068.1| 60S acidic ribosomal protein P0 [Sus scrofa].
Length = 318
Score = 533 bits (1372), Expect = e-152
Identities = 277/318 (87%), Positives = 277/318 (87%)
Frame = +2
Query: 74 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 253
MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 254 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 433
MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP PCE
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 434 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 613
VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 614 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 793
SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240
Query: 794 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVXXXXXXXXXXXXXXXXXXAPAXXX 973
IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV APA
Sbjct: 241 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAATTAAPAAAAAAPAKVE 300
Query: 974 XXXXXXXXXXXMGFGLFD 1027
MGFGLFD
Sbjct: 301 AKEESEESDEDMGFGLFD 318
>ref|NP_001230644.1| mRNA turnover 4 homolog [Sus scrofa].
Length = 241
Score = 49.3 bits (116), Expect = 4e-06
Identities = 45/193 (23%), Positives = 81/193 (41%), Gaps = 8/193 (4%)
Frame = +2
Query: 101 KSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAI-RGH 277
K N ++ + +D Y FI N+ + +++ IR + + + GKN +M A+ R
Sbjct: 23 KQNLIEELRKCVDTYKFLFIFSVANMRNSKLKDIRNAWKHSRM-FFGKNKVMMVALGRSP 81
Query: 278 LEN-NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCEVTVPAQN 454
E L ++ +RG VG +FT E+ + K TV N
Sbjct: 82 CEEYRDNLHQVSKKLRGEVGLLFTNRTKEEVNEWF--TKYGEMDYARAGNKATFTV---N 136
Query: 455 TGLGP------EKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNIS 616
GP + LG+ T + +G + +LSD ++ K GD + +A +L +
Sbjct: 137 LDPGPLEQFPHSMEPQLRQLGLPTTLKKGVVTLLSDYEVCKEGDVLTPEQARILKLFGYE 196
Query: 617 PFSFGLIIQQVFD 655
F + I+ ++D
Sbjct: 197 MAEFKVTIRYMWD 209
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,896,486
Number of extensions: 863217
Number of successful extensions: 3483
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3449
Number of HSP's successfully gapped: 2
Length of query: 373
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 273
Effective length of database: 8,854,232
Effective search space: 2417205336
Effective search space used: 2417205336
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVR01_0084_G10
(1120 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 650 0.0
Sscrofa_Chr08 535 e-149
Sscrofa_Chr17 68 1e-08
Sscrofa_Chr13 62 7e-07
>Sscrofa_Chr14
|| Length = 153851969
Score = 650 bits (328), Expect = 0.0
Identities = 477/527 (90%), Gaps = 16/527 (3%)
Strand = Plus / Minus
Query: 1 ctctcgccaggcgtcctcgtgtgagtgacatcgtctttaaaccctgcgtggcaatccctg 60
||||| |||||||||||||||||||||||||| |||||||||||||||||||||| || |
Sbjct: 120959405 ctctcaccaggcgtcctcgtgtgagtgacatcatctttaaaccctgcgtggcaattccgg 120959346
Query: 61 acgcaccgccgtgatgcccagggaagacagggcgacctggaagtccaactacttccttaa 120
|||||| ||||||||||||||||||||| |||| ||| |||||||||||| |||||||||
Sbjct: 120959345 acgcactgccgtgatgcccagggaagacggggcaacccggaagtccaactgcttccttaa 120959286
Query: 121 gataatccaacttctggatgattatccgaaatgcttcattgtgggagcagacaatgtggg 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 120959285 gataatccaacttctggatgattatctgaaatgcttcattgtgggagcagacaatgtggg 120959226
Query: 181 ctccaagcagatgcagcagatccgcatgtctctccgcgggaaagccgtggtgctgatggg 240
|||||| |||||||||||||||| |||||| ||||||||||| ||||||||||||| |||
Sbjct: 120959225 ctccaatcagatgcagcagatccacatgtccctccgcgggaaggccgtggtgctgacggg 120959166
Query: 241 caagaacaccatgatgc----gcaaggccatccgagggcacctggaaaacaacccagccc 296
||||||||||||||||| |||||||||||| |||||| |||||| ||
Sbjct: 120959165 caagaacaccatgatgcacatgcaaggccatcc-----------gaaaaccacccagtcc 120959117
Query: 297 tggagaaactgttgcctcacatccgggggaacgtgggctttgtgttcaccaaggaggacc 356
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 120959116 tggagaaacggttgcctcacatccgggggaacgtgggctttgtattcaccaaggaggacc 120959057
Query: 357 tcactgagatcagggacatgctgctggccaataaggtgccagctgccgcccgtgctggtg 416
|||||||| ||| ||||||||| ||||||| ||||||||||||||| |||| ||||| ||
Sbjct: 120959056 tcactgagttca-ggacatgcttctggccagtaaggtgccagctgctgcccatgctgctg 120958998
Query: 417 ccatagccccatgcgaagtcactgtccctgcccagaacactggtctggggcctgagaaga 476
||||||||| || ||||||||||| | |||||||||||||||||||||||| ||||||
Sbjct: 120958997 ccatagccctgtgtgaagtcactgtgcttgcccagaacactggtctggggcccaagaaga 120958938
Query: 477 cctccttcttccaggctttaggcatcaccactaaaatctccaggggc 523
||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 120958937 cctcctttttccaggctttaggcatcaccactaaaatttccaggggc 120958891
Score = 400 bits (202), Expect = e-109
Identities = 310/344 (90%), Gaps = 14/344 (4%)
Strand = Plus / Minus
Query: 557 aagactggagacaaagtgggagccagtgaagccacgttgctgaacatgttgaacatctcc 616
|||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 120958250 aagactggagacaaagtgggagccagtgaagccacgttgctgaacac---------ctcc 120958200
Query: 617 cccttctcctttgggctgatcatccagcaggtgtttgacaatggcagcatctacaaccct 676
|||||||||| ||||||||||||| ||| ||||||||| |||||||||||||||||||
Sbjct: 120958199 cccttctcctctgggctgatcatc-agcgggtgtttga---tggcagcatctacaaccct 120958144
Query: 677 gaagtgcttgacatcaccgaggaaactctgcattctcgcttcctggagggtgtccgcaat 736
|||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||
Sbjct: 120958143 gaagtgcttgacatcaccaaggaaactctgcattctcgcttcctgaacagtgtccgcaat 120958084
Query: 737 gttgccagcgtatgtctgcagattggttacccaactgttgcatctgtaccccattctatc 796
|||||| | ||||| ||||| | | ||||||||||||||||||||| || ||||||||||
Sbjct: 120958083 gttgcccgtgtatgcctgcacactagttacccaactgttgcatctgcactccattctatc 120958024
Query: 797 atcaatgggtacaagcgggtcctggctttgtctgtggaaactgattacaccttcccactt 856
||||| || |||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 120958023 atcaa-ggatacaagtgggtcctggctttgtctgtggagactgattacaccttcccactt 120957965
Query: 857 gctgaaaaggtcaaggccttcttggctgatccatctgcctttgt 900
|||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 120957964 gctgaaaaagtcaaggccttcttggctgatccatctgcatttgt 120957921
Score = 184 bits (93), Expect = 7e-44
Identities = 131/140 (93%), Gaps = 4/140 (2%)
Strand = Plus / Minus
Query: 955 agccccagccaaggctgaagcaaaggaggagtcggaggagtcggacgaggatatgggatt 1014
|||||||||||||| || ||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 120957866 agccccagccaaggttggagcaaaggaggagtcagaggagtcgggcgaggatatgggatt 120957807
Query: 1015 tggtctctttgactaaattaccaaaaagcaaccaagtcagccagctttatttgtgaaaca 1074
||||||| ||| | |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 120957806 tggtctc--tga-ttaattaccaaaaagcaaccaagtcagccagcttta-ttgtgaaaca 120957751
Query: 1075 aagaaataaaggcttacttc 1094
||||||||||||||||||||
Sbjct: 120957750 aagaaataaaggcttacttc 120957731
Score = 111 bits (56), Expect = 8e-22
Identities = 62/64 (96%)
Strand = Plus / Minus
Query: 508 taaaatctccaggggcaccattgaaatcctgagtgatgtgcagctgattaagactggaga 567
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 120958638 taaaatctccaggggcacaattgaaatcctgagtgatgtgcagctcattaagactggaga 120958579
Query: 568 caaa 571
||||
Sbjct: 120958578 caaa 120958575
Score = 71.9 bits (36), Expect = 7e-10
Identities = 51/56 (91%)
Strand = Plus / Minus
Query: 116 cttaagataatccaacttctggatgattatccgaaatgcttcattgtgggagcaga 171
|||||||| |||||||| ||| ||||||||| |||||||||||||||||||||||
Sbjct: 109965555 cttaagatcatccaactattgggtgattatccaaaatgcttcattgtgggagcaga 109965500
>Sscrofa_Chr08
|| Length = 148491826
Score = 535 bits (270), Expect = e-149
Identities = 737/889 (82%), Gaps = 29/889 (3%)
Strand = Plus / Minus
Query: 13 gtcctcgtgtgagtgacatcgtctttaaaccctgcgtggcaatccctgacgcaccgccgt 72
||||| |||| |||||||| |||||||||| |||| ||||||||||||| ||||||| ||
Sbjct: 145199002 gtccttgtgtaagtgacattgtctttaaacgctgcctggcaatccctgatgcaccgctgt 145198943
Query: 73 gatgcccagggaagacagggcgacctggaagtccaactacttccttaagataatccaact 132
| | ||||||| ||||||| ||||||| |||||| ||||||||||||| | ||| |||
Sbjct: 145198942 ggttcccagggcagacaggatgacctgggagtccagctacttccttaaggtcatctgact 145198883
Query: 133 tctggatgattatccgaaatgcttcattgtgggagcagacaatgtgggctccaagcagat 192
|||||||||||||||||||||||||| || ||||||||||| |||| | |
Sbjct: 145198882 tctggatgattatccgaaatgcttcactgccggagcagacaacgtggacac--------- 145198832
Query: 193 gcagcagatccgcatgtctctccgcgggaaagccgtggtgctgatgggcaagaacaccat 252
||||||| | | ||| || |||| | || ||||| |||||||| || | |||
Sbjct: 145198831 -------atccgcacgcccctcagcaggaa-gacgaggtgcggatgggcaggagcgccag 145198780
Query: 253 gatgcgcaaggccatccgagggcacctggaaaacaacccagccctggagaaactgttgcc 312
||||||| |||||||||||||||||||| | || | | || |||||||||| ||||||
Sbjct: 145198779 gatgcgcgaggccatccgagggcacctgcgga-cagcgccgctctggagaaacagttgcc 145198721
Query: 313 tcacatccg-ggggaacgtgggctttgtgttcaccaaggaggacctcactgagatcaggg 371
|||||||| ||||| |||||||||| |||||||||||||||||||||||||| || |
Sbjct: 145198720 tcacatcccaggggagggtgggctttgcattcaccaaggaggacctcactgagattagag 145198661
Query: 372 acatgctgctggccaataaggtgccagctgccgcccgtgctggtgccatagccccatgcg 431
||| |||||||||| ||||||||| ||||| || ||| |||||||||||||| |||
Sbjct: 145198660 acagcctgctggccagtaaggtgcccactgccacctgtgttggtgccatagccctgtgca 145198601
Query: 432 aagtcactgtccctgcccagaacactggtctggggcctgagaagacctccttcttccagg 491
||||||||| || ||||||||||| |||||||||| ||||||||| ||||||||||||
Sbjct: 145198600 gagtcactgtgcccgcccagaacacgagtctggggcccgagaagacccccttcttccagg 145198541
Query: 492 ctttaggcatcaccactaaaatctccaggggcaccattgaaatcctgagtgatgtgcagc 551
|||||||||||||| || ||||||||||||||||| | ||||||||||| ||||||||||
Sbjct: 145198540 ctttaggcatcaccgctgaaatctccaggggcaccgtcgaaatcctgagggatgtgcagc 145198481
Query: 552 tgattaagactggagacaaagtgggagccagtgaagccacgttgctgaacatgttgaaca 611
|||||||||| ||||||| |||||||||||| | |||||| |||||||||| |||||
Sbjct: 145198480 tgattaagac-ggagacagagtgggagccagcggagccacattgctgaacaccctgaacc 145198422
Query: 612 tctcccccttctcctttgggctgatcatccagcaggtgtttgacaatggcagcatctaca 671
|||||||| ||| |||||||| ||||||| ||||| ||||||| ||||||||| ||
Sbjct: 145198421 tctcccccagctcgtttgggctcatcatccggcaggggtttgactgcggcagcatcgacc 145198362
Query: 672 accctgaagtgcttgacatcaccgaggaaactctgcattctcgcttcctggagggtgtcc 731
| ||||| ||||||||| |||| ||||| |||||| ||||| | ||||||| |||
Sbjct: 145198361 atcctgacgtgcttgacgtcacagaggagactctggattct------ccggagggtatcc 145198308
Query: 732 gcaatgttgccagcgtatgtctgcagattggttacccaactgttgcatctgtaccccatt 791
| | |||||||||| |||||||||||||| |||||| |||||| ||||||||||||||
Sbjct: 145198307 gagagcttgccagcgtgtgtctgcagattggctacccagctgttgaatctgtaccccatt 145198248
Query: 792 ctatcatcaatgggtacaagcgggtcctggctttgtctgtggaaactgattacaccttcc 851
||||||||| ||||||||| |||||||||||||||| |||| || | | ||||| |||
Sbjct: 145198247 ctatcatcattgggtacaaatgggtcctggctttgtc--tggagacaggtaacaccgtcc 145198190
Query: 852 cacttgctgaaaaggtcaaggccttcttggctgatccatctgcctttgt 900
| ||||||||||| |||||||| ||||||||| ||||||| || |||||
Sbjct: 145198189 c-cttgctgaaaaagtcaaggcattcttggctaatccatcagcatttgt 145198142
Score = 93.7 bits (47), Expect = 2e-16
Identities = 69/75 (92%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 1002 aggatatgggatttggtctctttgactaaattaccaaaaagcaaccaagtcagccagctt 1061
|||||||||||||||||| |||||||||| | |||||| ||||||||| |||||||||||
Sbjct: 145198049 aggatatgggatttggtccctttgactaa-tcaccaaagagcaaccaactcagccagctt 145197991
Query: 1062 tatttgtgaaacaaa 1076
|||||||| ||||||
Sbjct: 145197990 tatttgtggaacaaa 145197976
>Sscrofa_Chr17
|| Length = 69701581
Score = 67.9 bits (34), Expect = 1e-08
Identities = 94/114 (82%)
Strand = Plus / Minus
Query: 722 gagggtgtccgcaatgttgccagcgtatgtctgcagattggttacccaactgttgcatct 781
||||||||| ||| | |||||||| |||||| ||||||| || |||| || |||||||
Sbjct: 28509167 gagggtgtctgcagttttgccagcctatgtcggcagattaattgcccacctcttgcatca 28509108
Query: 782 gtaccccattctatcatcaatgggtacaagcgggtcctggctttgtctgtggaa 835
| | ||||||||| ||||| |||||||| |||||||||||| |||| |||||
Sbjct: 28509107 ggatcccattctagcatcagcaggtacaagagggtcctggcttggtctatggaa 28509054
>Sscrofa_Chr13
|| Length = 218635234
Score = 61.9 bits (31), Expect = 7e-07
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 1040 aagcaaccaagtcagccagctttatttgtgaaacaaagaaataaaggctta 1090
||||||||||||||||||||| | ||||||||| | ||||||||||||||
Sbjct: 218208255 aagcaaccaagtcagccagctctgtttgtgaaatgaggaaataaaggctta 218208205
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,893,887
Number of extensions: 199
Number of successful extensions: 199
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 13
Length of query: 1120
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1099
Effective length of database: 2,808,413,156
Effective search space: 3086446058444
Effective search space used: 3086446058444
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)