Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0009_F01
(1292 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003840.2| succinyl-CoA ligase [GDP-forming] subunit alpha... 462 e-130
Alignment gi|NP_942127.1| ATP-citrate synthase isoform 2 [Homo sapiens]. 52 2e-06
Alignment gi|NP_001087.2| ATP-citrate synthase isoform 1 [Homo sapiens]. 52 2e-06
>ref|NP_003840.2| succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial
precursor [Homo sapiens].
Length = 346
Score = 462 bits (1190), Expect = e-130
Identities = 236/312 (75%), Positives = 240/312 (76%)
Frame = +2
Query: 122 QNGIRHCSYTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVXXXXXXXXXXX 301
QNGIRHCSYTASR+HLYVDKNTK+ICQGFTGKQGTFHSQQALEYGT LV
Sbjct: 35 QNGIRHCSYTASRQHLYVDKNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGQT 94
Query: 302 XXXXXVFNTVKEAKEQTGATASVIYVPPPFXXXXXXXXXXXXVPLVVCITEGIPQQDMVR 481
VFNTVKEAKEQTGATASVIYVPPPF +PLVVCITEGIPQQDMVR
Sbjct: 95 HLGLPVFNTVKEAKEQTGATASVIYVPPPFAAAAINEAIEAEIPLVVCITEGIPQQDMVR 154
Query: 482 VKHRLLRQGKTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTT 661
VKH+LLRQ KTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTT
Sbjct: 155 VKHKLLRQEKTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTT 214
Query: 662 QVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPXXXXXXXXXXXXXXXXXXXXXFLKQHN 841
QVGLGQSLCVGIGGDPFNGTDF DCLEIFLND FLKQHN
Sbjct: 215 QVGLGQSLCVGIGGDPFNGTDFIDCLEIFLNDSATEGIILIGEIGGNAEENAAEFLKQHN 274
Query: 842 SGPKSKPVVSFIAGLTAPPGRRMGHXXXXXXXXXXXXXXXXXXLQSAGVVVSMSPAQLGT 1021
SGP SKPVVSFIAGLTAPPGRRMGH LQSAGVVVSMSPAQLGT
Sbjct: 275 SGPNSKPVVSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKISALQSAGVVVSMSPAQLGT 334
Query: 1022 TIYKEFEKRKML 1057
TIYKEFEKRKML
Sbjct: 335 TIYKEFEKRKML 346
>ref|NP_942127.1| ATP-citrate synthase isoform 2 [Homo sapiens].
Length = 1091
Score = 51.6 bits (122), Expect = 2e-06
Identities = 54/213 (25%), Positives = 86/213 (40%), Gaps = 11/213 (5%)
Frame = +2
Query: 437 VVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPGVINPGECKIG--------IMPGHIH 592
+ I EGIP+ ++ + ++G T +IGP G I PG KIG I+ ++
Sbjct: 584 IAIIAEGIPEALTRKLIKKADQKGVT-IIGPATVGGIKPGCFKIGNTGGMLDNILASKLY 642
Query: 593 KKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPXXXX 772
+ G + VSRSG ++ E + ++ G V IGGD + G+ F D + + + P
Sbjct: 643 RPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKM 702
Query: 773 XXXXXXXXXXXXXXXXXFLKQHNSGPKSKPVVSFIAGLTA---PPGRRMGHXXXXXXXXX 943
+K+ G +KP+V + G A + GH
Sbjct: 703 IVVLGEIGGTEEYKICRGIKE---GRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQAS 759
Query: 944 XXXXXXXXXLQSAGVVVSMSPAQLGTTIYKEFE 1042
L+ AGV V S +LG I +E
Sbjct: 760 ETAVAKNQALKEAGVFVPRSFDELGEIIQSVYE 792
>ref|NP_001087.2| ATP-citrate synthase isoform 1 [Homo sapiens].
Length = 1101
Score = 51.6 bits (122), Expect = 2e-06
Identities = 54/213 (25%), Positives = 86/213 (40%), Gaps = 11/213 (5%)
Frame = +2
Query: 437 VVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPGVINPGECKIG--------IMPGHIH 592
+ I EGIP+ ++ + ++G T +IGP G I PG KIG I+ ++
Sbjct: 594 IAIIAEGIPEALTRKLIKKADQKGVT-IIGPATVGGIKPGCFKIGNTGGMLDNILASKLY 652
Query: 593 KKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPXXXX 772
+ G + VSRSG ++ E + ++ G V IGGD + G+ F D + + + P
Sbjct: 653 RPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKM 712
Query: 773 XXXXXXXXXXXXXXXXXFLKQHNSGPKSKPVVSFIAGLTA---PPGRRMGHXXXXXXXXX 943
+K+ G +KP+V + G A + GH
Sbjct: 713 IVVLGEIGGTEEYKICRGIKE---GRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQAS 769
Query: 944 XXXXXXXXXLQSAGVVVSMSPAQLGTTIYKEFE 1042
L+ AGV V S +LG I +E
Sbjct: 770 ETAVAKNQALKEAGVFVPRSFDELGEIIQSVYE 802
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,728,487
Number of extensions: 1070604
Number of successful extensions: 3251
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3245
Number of HSP's successfully gapped: 3
Length of query: 430
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 325
Effective length of database: 14,835,944
Effective search space: 4821681800
Effective search space used: 4821681800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA OVRM1_0009_F01
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0009_F01
(1292 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_063932.2| succinyl-CoA ligase [GDP-forming] subunit alpha... 460 e-129
Alignment gi|NP_001186225.1| ATP-citrate synthase isoform 1 [Mus musculus]. 52 1e-06
Alignment gi|NP_598798.1| ATP-citrate synthase isoform 2 [Mus musculus]. 52 1e-06
>ref|NP_063932.2| succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial
precursor [Mus musculus].
Length = 346
Score = 460 bits (1183), Expect = e-129
Identities = 231/313 (73%), Positives = 241/313 (76%)
Frame = +2
Query: 119 QQNGIRHCSYTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVXXXXXXXXXX 298
QQNGIRH SYTASRKH+Y+DKNTK+ICQGFTGKQGTFHSQQALEYGT LV
Sbjct: 34 QQNGIRHGSYTASRKHIYIDKNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGQ 93
Query: 299 XXXXXXVFNTVKEAKEQTGATASVIYVPPPFXXXXXXXXXXXXVPLVVCITEGIPQQDMV 478
VFNTVKEAKE+TGATASVIYVPPPF +PLVVCITEGIPQQDMV
Sbjct: 94 KHLGLPVFNTVKEAKEKTGATASVIYVPPPFAAAAINEAIDAEIPLVVCITEGIPQQDMV 153
Query: 479 RVKHRLLRQGKTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQT 658
RVKHRL RQG TRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQT
Sbjct: 154 RVKHRLTRQGTTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQT 213
Query: 659 TQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPXXXXXXXXXXXXXXXXXXXXXFLKQH 838
TQVGLGQSLC+GIGGDPFNGTDF DCLE+FLNDP FLK+H
Sbjct: 214 TQVGLGQSLCIGIGGDPFNGTDFIDCLEVFLNDPATEGIILIGEIGGHAEENAAAFLKEH 273
Query: 839 NSGPKSKPVVSFIAGLTAPPGRRMGHXXXXXXXXXXXXXXXXXXLQSAGVVVSMSPAQLG 1018
NSGPK+KPVVSFIAG+TAPPGRRMGH LQSAGVVVSMSPAQLG
Sbjct: 274 NSGPKAKPVVSFIAGITAPPGRRMGHAGAIIAGGKGGAKEKISALQSAGVVVSMSPAQLG 333
Query: 1019 TTIYKEFEKRKML 1057
TTIYKEFEKRKML
Sbjct: 334 TTIYKEFEKRKML 346
>ref|NP_001186225.1| ATP-citrate synthase isoform 1 [Mus musculus].
Length = 1101
Score = 52.0 bits (123), Expect = 1e-06
Identities = 55/213 (25%), Positives = 86/213 (40%), Gaps = 11/213 (5%)
Frame = +2
Query: 437 VVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPGVINPGECKIG--------IMPGHIH 592
+ I EGIP+ ++ + ++G T +IGP G I PG KIG I+ ++
Sbjct: 594 IAIIAEGIPEALTRKLIKKADQKGVT-IIGPATVGGIKPGCFKIGNTGGMLDNILASKLY 652
Query: 593 KKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPXXXX 772
+ G + VSRSG ++ E + ++ G V IGGD + G+ F D + + + P
Sbjct: 653 RPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKM 712
Query: 773 XXXXXXXXXXXXXXXXXFLKQHNSGPKSKPVVSFIAGLTA---PPGRRMGHXXXXXXXXX 943
+K+ G +KPVV + G A + GH
Sbjct: 713 IVVLGEIGGTEEYKICRGIKE---GRLTKPVVCWCIGTCATMFSSEVQFGHAGACANQAS 769
Query: 944 XXXXXXXXXLQSAGVVVSMSPAQLGTTIYKEFE 1042
L+ AGV V S +LG I +E
Sbjct: 770 ETAVAKNQALKEAGVFVPRSFDELGEIIQSVYE 802
>ref|NP_598798.1| ATP-citrate synthase isoform 2 [Mus musculus].
Length = 1091
Score = 52.0 bits (123), Expect = 1e-06
Identities = 55/213 (25%), Positives = 86/213 (40%), Gaps = 11/213 (5%)
Frame = +2
Query: 437 VVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPGVINPGECKIG--------IMPGHIH 592
+ I EGIP+ ++ + ++G T +IGP G I PG KIG I+ ++
Sbjct: 584 IAIIAEGIPEALTRKLIKKADQKGVT-IIGPATVGGIKPGCFKIGNTGGMLDNILASKLY 642
Query: 593 KKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPXXXX 772
+ G + VSRSG ++ E + ++ G V IGGD + G+ F D + + + P
Sbjct: 643 RPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKM 702
Query: 773 XXXXXXXXXXXXXXXXXFLKQHNSGPKSKPVVSFIAGLTA---PPGRRMGHXXXXXXXXX 943
+K+ G +KPVV + G A + GH
Sbjct: 703 IVVLGEIGGTEEYKICRGIKE---GRLTKPVVCWCIGTCATMFSSEVQFGHAGACANQAS 759
Query: 944 XXXXXXXXXLQSAGVVVSMSPAQLGTTIYKEFE 1042
L+ AGV V S +LG I +E
Sbjct: 760 ETAVAKNQALKEAGVFVPRSFDELGEIIQSVYE 792
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,107,155
Number of extensions: 908353
Number of successful extensions: 2739
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2733
Number of HSP's successfully gapped: 3
Length of query: 430
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 326
Effective length of database: 12,493,815
Effective search space: 4072983690
Effective search space used: 4072983690
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0009_F01
(1292 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532985.2| PREDICTED: similar to succinate-CoA ligase, GDP... 468 e-132
Alignment gi|XP_861351.1| PREDICTED: similar to ATP-citrate synthase (ATP... 51 2e-06
Alignment gi|XP_861323.1| PREDICTED: similar to ATP-citrate synthase (ATP... 51 2e-06
Alignment gi|XP_861298.1| PREDICTED: similar to ATP citrate lyase isoform... 51 2e-06
Alignment gi|XP_861266.1| PREDICTED: similar to ATP-citrate synthase (ATP... 51 2e-06
Alignment gi|XP_861238.1| PREDICTED: similar to ATP citrate lyase isoform... 51 2e-06
Alignment gi|XP_861212.1| PREDICTED: similar to ATP-citrate synthase (ATP... 51 2e-06
Alignment gi|XP_861179.1| PREDICTED: similar to ATP-citrate synthase (ATP... 51 2e-06
Alignment gi|XP_861149.1| PREDICTED: similar to ATP citrate lyase isoform... 51 2e-06
Alignment gi|XP_861122.1| PREDICTED: similar to ATP citrate lyase isoform... 51 2e-06
>ref|XP_532985.2| PREDICTED: similar to succinate-CoA ligase, GDP-forming, alpha
subunit [Canis familiaris].
Length = 333
Score = 468 bits (1203), Expect = e-132
Identities = 237/313 (75%), Positives = 243/313 (77%)
Frame = +2
Query: 119 QQNGIRHCSYTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVXXXXXXXXXX 298
QQNGIRHCSY ASRKHLYVDKNTKVICQGFTGKQGTFHSQQAL+YGT LV
Sbjct: 21 QQNGIRHCSYIASRKHLYVDKNTKVICQGFTGKQGTFHSQQALDYGTQLVGGTTPGKGGK 80
Query: 299 XXXXXXVFNTVKEAKEQTGATASVIYVPPPFXXXXXXXXXXXXVPLVVCITEGIPQQDMV 478
VFNTVKEAKE+TGATASVIYVPPPF VPLVVCITEGIPQQDMV
Sbjct: 81 THLGLPVFNTVKEAKEETGATASVIYVPPPFAAAAINEAVEAEVPLVVCITEGIPQQDMV 140
Query: 479 RVKHRLLRQGKTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQT 658
RVKH+LLRQGKTRLIGPNCPG+INPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQT
Sbjct: 141 RVKHKLLRQGKTRLIGPNCPGIINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQT 200
Query: 659 TQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPXXXXXXXXXXXXXXXXXXXXXFLKQH 838
TQVGLGQSLCVGIGGDPFNGTDF DCLEIFLNDP FLKQH
Sbjct: 201 TQVGLGQSLCVGIGGDPFNGTDFIDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQH 260
Query: 839 NSGPKSKPVVSFIAGLTAPPGRRMGHXXXXXXXXXXXXXXXXXXLQSAGVVVSMSPAQLG 1018
NSGPK+KPVVSFIAGLTAPPGRRMGH LQSAGVVVSMSPAQLG
Sbjct: 261 NSGPKAKPVVSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKISALQSAGVVVSMSPAQLG 320
Query: 1019 TTIYKEFEKRKML 1057
TTIYKEFEKRK+L
Sbjct: 321 TTIYKEFEKRKLL 333
>ref|XP_861351.1| PREDICTED: similar to ATP-citrate synthase (ATP-citrate
(pro-S-)-lyase) (Citrate cleavage enzyme) isoform 17
[Canis familiaris].
Length = 1101
Score = 51.2 bits (121), Expect = 2e-06
Identities = 55/213 (25%), Positives = 86/213 (40%), Gaps = 11/213 (5%)
Frame = +2
Query: 437 VVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPGVINPGECKIG--------IMPGHIH 592
+ I EGIP+ ++ + ++G T +IGP G I PG KIG I+ ++
Sbjct: 594 IAIIAEGIPEALTRKLIKKADQKGVT-IIGPATVGGIKPGCFKIGNTGGMLDNILASKLY 652
Query: 593 KKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPXXXX 772
+ G + VSRSG ++ E + ++ G V IGGD + G+ F D + + + P
Sbjct: 653 RPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKM 712
Query: 773 XXXXXXXXXXXXXXXXXFLKQHNSGPKSKPVVSFIAGLTA---PPGRRMGHXXXXXXXXX 943
+K+ G +KPVV + G A + GH
Sbjct: 713 IVVLGEIGGTEEYKICRGIKE---GRITKPVVCWCIGTCATMFSSEVQFGHAGACANQAS 769
Query: 944 XXXXXXXXXLQSAGVVVSMSPAQLGTTIYKEFE 1042
L+ AGV V S +LG I +E
Sbjct: 770 ETAVAKNQALKEAGVYVPPSFDELGEIIQSVYE 802
>ref|XP_861323.1| PREDICTED: similar to ATP-citrate synthase (ATP-citrate
(pro-S-)-lyase) (Citrate cleavage enzyme) isoform 16
[Canis familiaris].
Length = 1101
Score = 51.2 bits (121), Expect = 2e-06
Identities = 55/213 (25%), Positives = 86/213 (40%), Gaps = 11/213 (5%)
Frame = +2
Query: 437 VVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPGVINPGECKIG--------IMPGHIH 592
+ I EGIP+ ++ + ++G T +IGP G I PG KIG I+ ++
Sbjct: 594 IAIIAEGIPEALTRKLIKKADQKGVT-IIGPATVGGIKPGCFKIGNTGGMLDNILASKLY 652
Query: 593 KKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPXXXX 772
+ G + VSRSG ++ E + ++ G V IGGD + G+ F D + + + P
Sbjct: 653 RPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKM 712
Query: 773 XXXXXXXXXXXXXXXXXFLKQHNSGPKSKPVVSFIAGLTA---PPGRRMGHXXXXXXXXX 943
+K+ G +KPVV + G A + GH
Sbjct: 713 IVVLGEIGGTEEYKICRGIKE---GRITKPVVCWCIGTCATMFSSEVQFGHAGACANQAS 769
Query: 944 XXXXXXXXXLQSAGVVVSMSPAQLGTTIYKEFE 1042
L+ AGV V S +LG I +E
Sbjct: 770 ETAVAKNQALKEAGVYVPPSFDELGEIIQSVYE 802
>ref|XP_861298.1| PREDICTED: similar to ATP citrate lyase isoform 2 isoform 15 [Canis
familiaris].
Length = 1091
Score = 51.2 bits (121), Expect = 2e-06
Identities = 55/213 (25%), Positives = 86/213 (40%), Gaps = 11/213 (5%)
Frame = +2
Query: 437 VVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPGVINPGECKIG--------IMPGHIH 592
+ I EGIP+ ++ + ++G T +IGP G I PG KIG I+ ++
Sbjct: 584 IAIIAEGIPEALTRKLIKKADQKGVT-IIGPATVGGIKPGCFKIGNTGGMLDNILASKLY 642
Query: 593 KKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPXXXX 772
+ G + VSRSG ++ E + ++ G V IGGD + G+ F D + + + P
Sbjct: 643 RPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKM 702
Query: 773 XXXXXXXXXXXXXXXXXFLKQHNSGPKSKPVVSFIAGLTA---PPGRRMGHXXXXXXXXX 943
+K+ G +KPVV + G A + GH
Sbjct: 703 IVVLGEIGGTEEYKICRGIKE---GRITKPVVCWCIGTCATMFSSEVQFGHAGACANQAS 759
Query: 944 XXXXXXXXXLQSAGVVVSMSPAQLGTTIYKEFE 1042
L+ AGV V S +LG I +E
Sbjct: 760 ETAVAKNQALKEAGVYVPPSFDELGEIIQSVYE 792
>ref|XP_861266.1| PREDICTED: similar to ATP-citrate synthase (ATP-citrate
(pro-S-)-lyase) (Citrate cleavage enzyme) isoform 14
[Canis familiaris].
Length = 1101
Score = 51.2 bits (121), Expect = 2e-06
Identities = 55/213 (25%), Positives = 86/213 (40%), Gaps = 11/213 (5%)
Frame = +2
Query: 437 VVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPGVINPGECKIG--------IMPGHIH 592
+ I EGIP+ ++ + ++G T +IGP G I PG KIG I+ ++
Sbjct: 594 IAIIAEGIPEALTRKLIKKADQKGVT-IIGPATVGGIKPGCFKIGNTGGMLDNILASKLY 652
Query: 593 KKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPXXXX 772
+ G + VSRSG ++ E + ++ G V IGGD + G+ F D + + + P
Sbjct: 653 RPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKM 712
Query: 773 XXXXXXXXXXXXXXXXXFLKQHNSGPKSKPVVSFIAGLTA---PPGRRMGHXXXXXXXXX 943
+K+ G +KPVV + G A + GH
Sbjct: 713 IVVLGEIGGTEEYKICRGIKE---GRITKPVVCWCIGTCATMFSSEVQFGHAGACANQAS 769
Query: 944 XXXXXXXXXLQSAGVVVSMSPAQLGTTIYKEFE 1042
L+ AGV V S +LG I +E
Sbjct: 770 ETAVAKNQALKEAGVYVPPSFDELGEIIQSVYE 802
>ref|XP_861238.1| PREDICTED: similar to ATP citrate lyase isoform 2 isoform 13 [Canis
familiaris].
Length = 1094
Score = 51.2 bits (121), Expect = 2e-06
Identities = 55/213 (25%), Positives = 86/213 (40%), Gaps = 11/213 (5%)
Frame = +2
Query: 437 VVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPGVINPGECKIG--------IMPGHIH 592
+ I EGIP+ ++ + ++G T +IGP G I PG KIG I+ ++
Sbjct: 587 IAIIAEGIPEALTRKLIKKADQKGVT-IIGPATVGGIKPGCFKIGNTGGMLDNILASKLY 645
Query: 593 KKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPXXXX 772
+ G + VSRSG ++ E + ++ G V IGGD + G+ F D + + + P
Sbjct: 646 RPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKM 705
Query: 773 XXXXXXXXXXXXXXXXXFLKQHNSGPKSKPVVSFIAGLTA---PPGRRMGHXXXXXXXXX 943
+K+ G +KPVV + G A + GH
Sbjct: 706 IVVLGEIGGTEEYKICRGIKE---GRITKPVVCWCIGTCATMFSSEVQFGHAGACANQAS 762
Query: 944 XXXXXXXXXLQSAGVVVSMSPAQLGTTIYKEFE 1042
L+ AGV V S +LG I +E
Sbjct: 763 ETAVAKNQALKEAGVYVPPSFDELGEIIQSVYE 795
>ref|XP_861212.1| PREDICTED: similar to ATP-citrate synthase (ATP-citrate
(pro-S-)-lyase) (Citrate cleavage enzyme) isoform 12
[Canis familiaris].
Length = 1111
Score = 51.2 bits (121), Expect = 2e-06
Identities = 55/213 (25%), Positives = 86/213 (40%), Gaps = 11/213 (5%)
Frame = +2
Query: 437 VVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPGVINPGECKIG--------IMPGHIH 592
+ I EGIP+ ++ + ++G T +IGP G I PG KIG I+ ++
Sbjct: 604 IAIIAEGIPEALTRKLIKKADQKGVT-IIGPATVGGIKPGCFKIGNTGGMLDNILASKLY 662
Query: 593 KKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPXXXX 772
+ G + VSRSG ++ E + ++ G V IGGD + G+ F D + + + P
Sbjct: 663 RPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKM 722
Query: 773 XXXXXXXXXXXXXXXXXFLKQHNSGPKSKPVVSFIAGLTA---PPGRRMGHXXXXXXXXX 943
+K+ G +KPVV + G A + GH
Sbjct: 723 IVVLGEIGGTEEYKICRGIKE---GRITKPVVCWCIGTCATMFSSEVQFGHAGACANQAS 779
Query: 944 XXXXXXXXXLQSAGVVVSMSPAQLGTTIYKEFE 1042
L+ AGV V S +LG I +E
Sbjct: 780 ETAVAKNQALKEAGVYVPPSFDELGEIIQSVYE 812
>ref|XP_861179.1| PREDICTED: similar to ATP-citrate synthase (ATP-citrate
(pro-S-)-lyase) (Citrate cleavage enzyme) isoform 11
[Canis familiaris].
Length = 1097
Score = 51.2 bits (121), Expect = 2e-06
Identities = 55/213 (25%), Positives = 86/213 (40%), Gaps = 11/213 (5%)
Frame = +2
Query: 437 VVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPGVINPGECKIG--------IMPGHIH 592
+ I EGIP+ ++ + ++G T +IGP G I PG KIG I+ ++
Sbjct: 590 IAIIAEGIPEALTRKLIKKADQKGVT-IIGPATVGGIKPGCFKIGNTGGMLDNILASKLY 648
Query: 593 KKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPXXXX 772
+ G + VSRSG ++ E + ++ G V IGGD + G+ F D + + + P
Sbjct: 649 RPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKM 708
Query: 773 XXXXXXXXXXXXXXXXXFLKQHNSGPKSKPVVSFIAGLTA---PPGRRMGHXXXXXXXXX 943
+K+ G +KPVV + G A + GH
Sbjct: 709 IVVLGEIGGTEEYKICRGIKE---GRITKPVVCWCIGTCATMFSSEVQFGHAGACANQAS 765
Query: 944 XXXXXXXXXLQSAGVVVSMSPAQLGTTIYKEFE 1042
L+ AGV V S +LG I +E
Sbjct: 766 ETAVAKNQALKEAGVYVPPSFDELGEIIQSVYE 798
>ref|XP_861149.1| PREDICTED: similar to ATP citrate lyase isoform 2 isoform 10 [Canis
familiaris].
Length = 1087
Score = 51.2 bits (121), Expect = 2e-06
Identities = 55/213 (25%), Positives = 86/213 (40%), Gaps = 11/213 (5%)
Frame = +2
Query: 437 VVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPGVINPGECKIG--------IMPGHIH 592
+ I EGIP+ ++ + ++G T +IGP G I PG KIG I+ ++
Sbjct: 580 IAIIAEGIPEALTRKLIKKADQKGVT-IIGPATVGGIKPGCFKIGNTGGMLDNILASKLY 638
Query: 593 KKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPXXXX 772
+ G + VSRSG ++ E + ++ G V IGGD + G+ F D + + + P
Sbjct: 639 RPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKM 698
Query: 773 XXXXXXXXXXXXXXXXXFLKQHNSGPKSKPVVSFIAGLTA---PPGRRMGHXXXXXXXXX 943
+K+ G +KPVV + G A + GH
Sbjct: 699 IVVLGEIGGTEEYKICRGIKE---GRITKPVVCWCIGTCATMFSSEVQFGHAGACANQAS 755
Query: 944 XXXXXXXXXLQSAGVVVSMSPAQLGTTIYKEFE 1042
L+ AGV V S +LG I +E
Sbjct: 756 ETAVAKNQALKEAGVYVPPSFDELGEIIQSVYE 788
>ref|XP_861122.1| PREDICTED: similar to ATP citrate lyase isoform 2 isoform 9 [Canis
familiaris].
Length = 1095
Score = 51.2 bits (121), Expect = 2e-06
Identities = 55/213 (25%), Positives = 86/213 (40%), Gaps = 11/213 (5%)
Frame = +2
Query: 437 VVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPGVINPGECKIG--------IMPGHIH 592
+ I EGIP+ ++ + ++G T +IGP G I PG KIG I+ ++
Sbjct: 588 IAIIAEGIPEALTRKLIKKADQKGVT-IIGPATVGGIKPGCFKIGNTGGMLDNILASKLY 646
Query: 593 KKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPXXXX 772
+ G + VSRSG ++ E + ++ G V IGGD + G+ F D + + + P
Sbjct: 647 RPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKM 706
Query: 773 XXXXXXXXXXXXXXXXXFLKQHNSGPKSKPVVSFIAGLTA---PPGRRMGHXXXXXXXXX 943
+K+ G +KPVV + G A + GH
Sbjct: 707 IVVLGEIGGTEEYKICRGIKE---GRITKPVVCWCIGTCATMFSSEVQFGHAGACANQAS 763
Query: 944 XXXXXXXXXLQSAGVVVSMSPAQLGTTIYKEFE 1042
L+ AGV V S +LG I +E
Sbjct: 764 ETAVAKNQALKEAGVYVPPSFDELGEIIQSVYE 796
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,404,695
Number of extensions: 1079099
Number of successful extensions: 3237
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 3215
Number of HSP's successfully gapped: 17
Length of query: 430
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 324
Effective length of database: 15,340,888
Effective search space: 4970447712
Effective search space used: 4970447712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0009_F01
(1292 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030254.1| succinyl-CoA ligase [GDP-forming] subunit al... 468 e-132
>ref|NP_001030254.1| succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial
precursor [Bos taurus].
Length = 346
Score = 468 bits (1204), Expect = e-132
Identities = 236/313 (75%), Positives = 243/313 (77%)
Frame = +2
Query: 119 QQNGIRHCSYTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVXXXXXXXXXX 298
QQNGIRHCSYT SRKHLYVD+NTK+ICQGFTGKQGTFHSQQALEYGT LV
Sbjct: 34 QQNGIRHCSYTTSRKHLYVDRNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGK 93
Query: 299 XXXXXXVFNTVKEAKEQTGATASVIYVPPPFXXXXXXXXXXXXVPLVVCITEGIPQQDMV 478
VFNTVKEAKEQTGATASVIYVPPPF V LVVCITEGIPQQDMV
Sbjct: 94 THLGLPVFNTVKEAKEQTGATASVIYVPPPFAVAAIDEAIEAEVSLVVCITEGIPQQDMV 153
Query: 479 RVKHRLLRQGKTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQT 658
RVKH+LLRQGKTRL+GPNCPGVINPGECKIGIMPGHIHKKGR+GIVSRSGTLTYEAVHQT
Sbjct: 154 RVKHKLLRQGKTRLVGPNCPGVINPGECKIGIMPGHIHKKGRVGIVSRSGTLTYEAVHQT 213
Query: 659 TQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPXXXXXXXXXXXXXXXXXXXXXFLKQH 838
TQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDP FLKQH
Sbjct: 214 TQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQH 273
Query: 839 NSGPKSKPVVSFIAGLTAPPGRRMGHXXXXXXXXXXXXXXXXXXLQSAGVVVSMSPAQLG 1018
NSGPK+KPVVSFIAGLTAPPGRRMGH LQSAGVVVSMSPAQLG
Sbjct: 274 NSGPKAKPVVSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKIAALQSAGVVVSMSPAQLG 333
Query: 1019 TTIYKEFEKRKML 1057
TT+YKEFEKRKML
Sbjct: 334 TTMYKEFEKRKML 346
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,611,334
Number of extensions: 1050971
Number of successful extensions: 3125
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3121
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 325
Effective length of database: 14,207,134
Effective search space: 4617318550
Effective search space used: 4617318550
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0009_F01
(1292 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999574.1| succinyl-CoA ligase [GDP-forming] subunit alpha... 423 e-118
Alignment gi|NP_001098772.1| ATP citrate lyase [Sus scrofa]. 52 7e-07
>ref|NP_999574.1| succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial [Sus
scrofa].
Length = 350
Score = 423 bits (1087), Expect = e-118
Identities = 230/332 (69%), Positives = 234/332 (70%), Gaps = 19/332 (5%)
Frame = +2
Query: 119 QQNGIRHCSYTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVXXXXXXXXXX 298
QQNGIRHCSYTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLV
Sbjct: 21 QQNGIRHCSYTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGK 80
Query: 299 XXXXXXVFNTVKEAKEQTGATASVIYVPPPFXXXXXXXXXXXXVPLVVCITEGIPQQDMV 478
VFNTVKEAKEQTGATASVIYVPPPF VPLVVCITEGIPQQDMV
Sbjct: 81 THLGLPVFNTVKEAKEQTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMV 140
Query: 479 RVKHRLLRQGKTRLIGPNCPGVIN-------------------PGECKIGIMPGHIHKKG 601
RVKHRLLRQGKTRLIGPNCPGVIN KI ++ G +
Sbjct: 141 RVKHRLLRQGKTRLIGPNCPGVINRFLRFAVYITSRVFTCTQQEEYRKIPLLFG--TRSI 198
Query: 602 RIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPXXXXXXX 781
+GIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDP
Sbjct: 199 HMGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIIL 258
Query: 782 XXXXXXXXXXXXXXFLKQHNSGPKSKPVVSFIAGLTAPPGRRMGHXXXXXXXXXXXXXXX 961
FLKQHNSGPKSKPVVSFIAGLTAPPGRRMGH
Sbjct: 259 IGEIGGNAEENAAEFLKQHNSGPKSKPVVSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEK 318
Query: 962 XXXLQSAGVVVSMSPAQLGTTIYKEFEKRKML 1057
LQSAGVVVSMSPAQLGTTIYKEFEKRKML
Sbjct: 319 ITALQSAGVVVSMSPAQLGTTIYKEFEKRKML 350
>ref|NP_001098772.1| ATP citrate lyase [Sus scrofa].
Length = 1076
Score = 52.0 bits (123), Expect = 7e-07
Identities = 55/213 (25%), Positives = 86/213 (40%), Gaps = 11/213 (5%)
Frame = +2
Query: 437 VVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPGVINPGECKIG--------IMPGHIH 592
+ I EGIP+ ++ + ++G T +IGP G I PG KIG I+ ++
Sbjct: 584 IAIIAEGIPEALTRKLIKKAEQKGVT-IIGPATVGGIKPGCFKIGNTGGMLDNILASKLY 642
Query: 593 KKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPXXXX 772
+ G + VSRSG ++ E + ++ G V IGGD + G+ F D + + + P
Sbjct: 643 RPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKM 702
Query: 773 XXXXXXXXXXXXXXXXXFLKQHNSGPKSKPVVSFIAGLTA---PPGRRMGHXXXXXXXXX 943
+K+ G +KPVV + G A + GH
Sbjct: 703 IVVLGEIGGTEEYKICRGIKE---GRITKPVVCWCIGTCATMFSSEVQFGHAGACANQAS 759
Query: 944 XXXXXXXXXLQSAGVVVSMSPAQLGTTIYKEFE 1042
L+ AGV V S +LG I +E
Sbjct: 760 ETAIAKNQALKEAGVFVPRSFDELGEIIQSVYE 792
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,069,214
Number of extensions: 674177
Number of successful extensions: 1980
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1966
Number of HSP's successfully gapped: 3
Length of query: 430
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 328
Effective length of database: 8,804,438
Effective search space: 2887855664
Effective search space used: 2887855664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0009_F01
(1292 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 486 e-134
>Sscrofa_Chr03
|| Length = 144787322
Score = 486 bits (245), Expect = e-134
Identities = 245/245 (100%)
Strand = Plus / Plus
Query: 1031 aaggagtttgaaaagaggaagatgctatgaaagcaaaacgaatgagaaattccctaaacc 1090
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63174567 aaggagtttgaaaagaggaagatgctatgaaagcaaaacgaatgagaaattccctaaacc 63174626
Query: 1091 tgtggaatgaatcattgtagaattgtaagccctgccctgttgcttctgtcatcctctgtc 1150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63174627 tgtggaatgaatcattgtagaattgtaagccctgccctgttgcttctgtcatcctctgtc 63174686
Query: 1151 agcttgggcgcctgctgctggtctttgaggcaacaggaagcccaaacaaggtttagcgtg 1210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63174687 agcttgggcgcctgctgctggtctttgaggcaacaggaagcccaaacaaggtttagcgtg 63174746
Query: 1211 tcctgctttgagatggtttcacctcaccgaataacagacagccaataaatctaccacttg 1270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63174747 tcctgctttgagatggtttcacctcaccgaataacagacagccaataaatctaccacttg 63174806
Query: 1271 atttg 1275
|||||
Sbjct: 63174807 atttg 63174811
Score = 426 bits (215), Expect = e-116
Identities = 215/215 (100%)
Strand = Plus / Plus
Query: 336 aggccaaagaacaaaccggagcgacggcatctgtcatttatgtccctcccccttttgctg 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63158908 aggccaaagaacaaaccggagcgacggcatctgtcatttatgtccctcccccttttgctg 63158967
Query: 396 ctgctgccattaatgaagccatcgatgcagaagtgcccttggtcgtgtgcatcactgaag 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63158968 ctgctgccattaatgaagccatcgatgcagaagtgcccttggtcgtgtgcatcactgaag 63159027
Query: 456 gcatcccgcagcaggacatggtgcgggtaaagcacaggctgctgcgccagggaaagacga 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63159028 gcatcccgcagcaggacatggtgcgggtaaagcacaggctgctgcgccagggaaagacga 63159087
Query: 516 ggctgatcgggccaaactgccctggagtcatcaat 550
|||||||||||||||||||||||||||||||||||
Sbjct: 63159088 ggctgatcgggccaaactgccctggagtcatcaat 63159122
Score = 345 bits (174), Expect = 4e-92
Identities = 186/190 (97%)
Strand = Plus / Plus
Query: 845 ggtcccaagtccaagccggtggtgtccttcattgctggcttaactgcccctcctggcaga 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63171450 ggtcccaagtccaagccggtggtgtccttcattgctggcttaactgcccctcctggcaga 63171509
Query: 905 agaatgggtcacgcaggggcaattattgctggaggaaagggaggcgctaaagagaagatc 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63171510 agaatgggtcacgcaggggcaattattgctggaggaaagggaggcgctaaagagaagatc 63171569
Query: 965 actgccctgcagagtgcgggagttgtggtcagcatgtctcccgcacagctgggaaccacc 1024
||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 63171570 actgccctgcagagtgcaggagttgtggtcagcatgtctcctgcacagcctggaaccacc 63171629
Query: 1025 atctacaagg 1034
||||||||||
Sbjct: 63171630 atctacaagg 63171639
Score = 297 bits (150), Expect = 8e-78
Identities = 153/154 (99%)
Strand = Plus / Plus
Query: 692 ggcattggaggtgatcctttcaatggaacagattttactgattgccttgaaatctttctg 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63168672 ggcattggaggtgatcctttcaatggaacagattttactgattgccttgaaatctttctg 63168731
Query: 752 aatgatccagccacggaaggcatcatattgattggtgaaattggtggtaatgcggaagag 811
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63168732 aatgatccagccacagaaggcatcatattgattggtgaaattggtggtaatgcggaagag 63168791
Query: 812 aatgctgcagaatttttgaagcaacataattcag 845
||||||||||||||||||||||||||||||||||
Sbjct: 63168792 aatgctgcagaatttttgaagcaacataattcag 63168825
Score = 232 bits (117), Expect = 4e-58
Identities = 120/121 (99%)
Strand = Plus / Plus
Query: 218 cagggcacctttcatagccagcaggcactggaatatggcaccaatctagttggaggaacc 277
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 63154619 cagggcacctttcatagccagcaggcgctggaatatggcaccaatctagttggaggaacc 63154678
Query: 278 actccagggaaaggaggcaagacgcatctgggcctaccagtctttaatactgtgaaggag 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63154679 actccagggaaaggaggcaagacgcatctgggcctaccagtctttaatactgtgaaggag 63154738
Query: 338 g 338
|
Sbjct: 63154739 g 63154739
Score = 208 bits (105), Expect = 6e-51
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 117 tgcaacagaatggaattcggcattgttcctatacagcttcccggaagcatctctatgttg 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63149385 tgcaacagaatggaattcggcattgttcctatacagcttcccggaagcatctctatgttg 63149444
Query: 177 ataaaaatacgaaggttatttgccagggtttcactggtaagcagg 221
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63149445 ataaaaatacgaaggttatttgccagggtttcactggtaagcagg 63149489
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 608 ggtatcgtgtccagatctggcaccctgacttatgaagcagttcatcaaacaacacaagtt 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63166964 ggtatcgtgtccagatctggcaccctgacttatgaagcagttcatcaaacaacacaagtt 63167023
Query: 668 ggcttggggcagtctttgtgtgttgg 693
||||||||||||||||||||||||||
Sbjct: 63167024 ggcttggggcagtctttgtgtgttgg 63167049
Score = 119 bits (60), Expect = 4e-24
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 551 cctggagaatgcaaaattggcatcatgcctggccatattcacaagaaaggacgaattggt 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63159272 cctggagaatgcaaaattggcatcatgcctggccatattcacaagaaaggacgaattggt 63159331
Score = 63.9 bits (32), Expect = 2e-07
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 1 ctaggagtgtcattggcggatgaccgcaggcctcgt 36
||||||||||||||||||||||||||||| ||||||
Sbjct: 63138797 ctaggagtgtcattggcggatgaccgcagccctcgt 63138832
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,854,491
Number of extensions: 167
Number of successful extensions: 167
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 9
Length of query: 1292
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1271
Effective length of database: 2,808,413,156
Effective search space: 3569493121276
Effective search space used: 3569493121276
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)