Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0064_D07
(1397 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001094632.1| tropomyosin alpha-4 chain [Bos taurus]. 380 e-105
Alignment gi|NP_001011674.1| tropomyosin alpha-3 chain [Bos taurus]. 299 5e-81
Alignment gi|NP_001013608.1| tropomyosin alpha-1 chain [Bos taurus]. 296 2e-80
Alignment gi|NP_001010995.2| tropomyosin beta chain [Bos taurus]. 280 3e-75
Alignment gi|XP_002700658.1| PREDICTED: tropomyosin 2, beta-like [Bos tau... 174 2e-43
Alignment gi|XP_002699032.1| PREDICTED: tropomyosin 4-like [Bos taurus]. 173 3e-43
Alignment gi|XP_589950.1| PREDICTED: tropomyosin 4 isoform 1 [Bos taurus]. 173 3e-43
Alignment gi|XP_002688284.1| PREDICTED: tropomyosin 4-like [Bos taurus]. 155 6e-38
Alignment gi|XP_001250860.3| PREDICTED: tropomyosin 4 [Bos taurus]. 155 6e-38
Alignment gi|XP_001252597.2| PREDICTED: tropomyosin 4 [Bos taurus]. 155 6e-38
>ref|NP_001094632.1| tropomyosin alpha-4 chain [Bos taurus].
Length = 284
Score = 380 bits (976), Expect = e-105
Identities = 212/284 (74%), Positives = 213/284 (75%)
Frame = +2
Query: 71 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 250
MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLK TEDELDKY
Sbjct: 1 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKETEDELDKY 60
Query: 251 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 430
SENLKDAQEKLEL+EKKASDAEGDVAALNRRIQLVEEELDRAQER
Sbjct: 61 SENLKDAQEKLELTEKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 431 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 610
RGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELERAE 180
Query: 611 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 790
VSELKCGDLEEELKNVTNNL SDKLK
Sbjct: 181 ERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYEEEIKLLSDKLKEAETRAE 240
Query: 791 XXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 922
KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI
Sbjct: 241 FAERTVAKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 284
>ref|NP_001011674.1| tropomyosin alpha-3 chain [Bos taurus].
Length = 284
Score = 299 bits (765), Expect = 5e-81
Identities = 167/284 (58%), Positives = 193/284 (67%)
Frame = +2
Query: 71 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 250
MEAIKKKMQMLKLDKENA+DRAEQAE+++K AEE+ KQ+E+EL +QKKLKGTEDELDKY
Sbjct: 1 MEAIKKKMQMLKLDKENALDRAEQAEAEQKQAEERSKQLEDELAAMQKKLKGTEDELDKY 60
Query: 251 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 430
SE LKDAQEKLEL+EKKA+DAE +VA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 431 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 610
RGMKVIENRA+KDEEKME+QE+QLKEAKHIAEEADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTE 180
Query: 611 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 790
++E KC +LEEELKNVTNNL +DKLK
Sbjct: 181 ERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYEEEIKILTDKLKEAETRAE 240
Query: 791 XXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 922
KLEKTIDDLE++L K + + + LD LN++ I
Sbjct: 241 FAERSVAKLEKTIDDLEDELYAQKLKYKAISEELDHALNDMTSI 284
>ref|NP_001013608.1| tropomyosin alpha-1 chain [Bos taurus].
Length = 284
Score = 296 bits (759), Expect = 2e-80
Identities = 168/284 (59%), Positives = 191/284 (67%)
Frame = +2
Query: 71 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 250
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLK TEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKY 60
Query: 251 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 430
SE LKDAQEKLEL+EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 431 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 610
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 611 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 790
+SE KC +LEEELK VTNNL SDKLK
Sbjct: 181 ERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 240
Query: 791 XXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 922
KLEK+IDDLE++L K + + + LD LN++ I
Sbjct: 241 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI 284
>ref|NP_001010995.2| tropomyosin beta chain [Bos taurus].
Length = 284
Score = 280 bits (715), Expect = 3e-75
Identities = 157/284 (55%), Positives = 186/284 (65%)
Frame = +2
Query: 71 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 250
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+EEE LQKKLKGTEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 251 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 430
SE++KDAQEKLE +EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 431 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 610
RGMKVIENRAMKDEEKME+QEMQLKEAKHIAE++DRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSE 180
Query: 611 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 790
V+E + LEEEL+ + L +KLK
Sbjct: 181 ERAEVAESRARQLEEELRTMDQALKSLMASEEEYSTKEDKYEEEIKLLEEKLKEAETRAE 240
Query: 791 XXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 922
KLEKTIDDLE+++ K + + + LD LN++ +
Sbjct: 241 FAERSVAKLEKTIDDLEDEVYAQKMKYKAISEELDNALNDITSL 284
>ref|XP_002700658.1| PREDICTED: tropomyosin 2, beta-like [Bos taurus].
Length = 125
Score = 174 bits (441), Expect = 2e-43
Identities = 89/105 (84%), Positives = 99/105 (94%)
Frame = +2
Query: 71 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 250
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLK TEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKY 60
Query: 251 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQER 385
SE LKDAQEKLEL+EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQER 105
>ref|XP_002699032.1| PREDICTED: tropomyosin 4-like [Bos taurus].
Length = 248
Score = 173 bits (439), Expect = 3e-43
Identities = 102/237 (43%), Positives = 134/237 (56%)
Frame = +2
Query: 206 LQKKLKGTEDELDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQER 385
+++K++ + + D E + Q ++E + AE +VA+LNRRIQLVEEELDRAQER
Sbjct: 10 VKRKIQVLQQQADDAQERAERLQREVEGEGRAREQAEAEVASLNRRIQLVEEELDRAQER 69
Query: 386 XXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEV 565
RGMKVIEN+A+KDEEKME+QE+QLKEAKHIAEEADRKYEEV
Sbjct: 70 LATALQKLEEAEKAADESERGMKVIENQALKDEEKMELQEIQLKEAKHIAEEADRKYEEV 129
Query: 566 ARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXX 745
ARKLVI ++E +C +++E++K + NL
Sbjct: 130 ARKLVIIDGDLEGTEERAELAESRCREMDEQIKLMDQNLKCLSAAEEKYSQKEDKYKEEI 189
Query: 746 XXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 916
+DKLK KLEKTIDDLE+KL KEE++ + LDQTL +LN
Sbjct: 190 KILTDKLKEAETRAEFAERLVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQTLLDLN 246
Score = 50.8 bits (120), Expect = 3e-06
Identities = 32/103 (31%), Positives = 56/103 (54%)
Frame = +2
Query: 74 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 253
E + +K+ ++ D E +RAE AES + +E+ K +++ L L + + DKY
Sbjct: 127 EEVARKLVIIDGDLEGTEERAELAESRCREMDEQIKLMDQNLKCLSAAEEKYSQKEDKYK 186
Query: 254 ENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQE 382
E +K +KL+ +E +A AE VA L + I +E++L +E
Sbjct: 187 EEIKILTDKLKEAETRAEFAERLVAKLEKTIDDLEDKLKCTKE 229
>ref|XP_589950.1| PREDICTED: tropomyosin 4 isoform 1 [Bos taurus].
Length = 248
Score = 173 bits (439), Expect = 3e-43
Identities = 102/237 (43%), Positives = 134/237 (56%)
Frame = +2
Query: 206 LQKKLKGTEDELDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQER 385
+++K++ + + D E + Q ++E + AE +VA+LNRRIQLVEEELDRAQER
Sbjct: 10 VKRKIQVLQQQADDAQERAERLQREVEGEGRAREQAEAEVASLNRRIQLVEEELDRAQER 69
Query: 386 XXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEV 565
RGMKVIEN+A+KDEEKME+QE+QLKEAKHIAEEADRKYEEV
Sbjct: 70 LATALQKLEEAEKAADESERGMKVIENQALKDEEKMELQEIQLKEAKHIAEEADRKYEEV 129
Query: 566 ARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXX 745
ARKLVI ++E +C +++E++K + NL
Sbjct: 130 ARKLVIIDGDLEGTEERAELAESRCREMDEQIKLMDQNLKCLSAAEEKYSQKEDKYKEEI 189
Query: 746 XXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 916
+DKLK KLEKTIDDLE+KL KEE++ + LDQTL +LN
Sbjct: 190 KILTDKLKEAETRAEFAERLVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQTLLDLN 246
Score = 50.8 bits (120), Expect = 3e-06
Identities = 32/103 (31%), Positives = 56/103 (54%)
Frame = +2
Query: 74 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 253
E + +K+ ++ D E +RAE AES + +E+ K +++ L L + + DKY
Sbjct: 127 EEVARKLVIIDGDLEGTEERAELAESRCREMDEQIKLMDQNLKCLSAAEEKYSQKEDKYK 186
Query: 254 ENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQE 382
E +K +KL+ +E +A AE VA L + I +E++L +E
Sbjct: 187 EEIKILTDKLKEAETRAEFAERLVAKLEKTIDDLEDKLKCTKE 229
>ref|XP_002688284.1| PREDICTED: tropomyosin 4-like [Bos taurus].
Length = 248
Score = 155 bits (393), Expect = 6e-38
Identities = 97/234 (41%), Positives = 125/234 (53%)
Frame = +2
Query: 215 KLKGTEDELDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXX 394
K++ + + D E K Q+K+E AE +V +LNRRIQLVEEEL+RAQER
Sbjct: 13 KIQVLQQQADDAEERAKCLQQKVEGERWAREQAEAEVVSLNRRIQLVEEELNRAQERLAT 72
Query: 395 XXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARK 574
R MKVIEN+A+KDEEKME+QE+QLKEAKHIAEEA RKYEEVARK
Sbjct: 73 ELQKLEEAEKAADESERVMKVIENQALKDEEKMELQEIQLKEAKHIAEEAHRKYEEVARK 132
Query: 575 LVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXX 754
LVI ++E +C + E+ + + +L
Sbjct: 133 LVIIEGDLERTEERAELAESRCRKMGEQTRLMDQHLKCLSAAEEKYSQKEDKYEEEIKIL 192
Query: 755 SDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 916
+DKLK KLEKTIDDLE+KL KEE++ + L+QTL +LN
Sbjct: 193 TDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEDLCTQRMLNQTLLDLN 246
Score = 50.4 bits (119), Expect = 4e-06
Identities = 31/103 (30%), Positives = 56/103 (54%)
Frame = +2
Query: 74 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 253
E + +K+ +++ D E +RAE AES + E+ + +++ L L + + DKY
Sbjct: 127 EEVARKLVIIEGDLERTEERAELAESRCRKMGEQTRLMDQHLKCLSAAEEKYSQKEDKYE 186
Query: 254 ENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQE 382
E +K +KL+ +E +A AE VA L + I +E++L +E
Sbjct: 187 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKE 229
>ref|XP_001250860.3| PREDICTED: tropomyosin 4 [Bos taurus].
Length = 248
Score = 155 bits (393), Expect = 6e-38
Identities = 97/234 (41%), Positives = 125/234 (53%)
Frame = +2
Query: 215 KLKGTEDELDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXX 394
K++ + + D E K Q+K+E AE +V +LNRRIQLVEEEL+RAQER
Sbjct: 13 KIQVLQQQADDAEERAKCLQQKVEGERWAREQAEAEVVSLNRRIQLVEEELNRAQERLAT 72
Query: 395 XXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARK 574
R MKVIEN+A+KDEEKME+QE+QLKEAKHIAEEA RKYEEVARK
Sbjct: 73 ELQKLEEAEKAADESERVMKVIENQALKDEEKMELQEIQLKEAKHIAEEAHRKYEEVARK 132
Query: 575 LVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXX 754
LVI ++E +C + E+ + + +L
Sbjct: 133 LVIIEGDLERTEERAELAESRCRKMGEQTRLMDQHLKCLSAAEEKYSQKEDKYEEEIKIL 192
Query: 755 SDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 916
+DKLK KLEKTIDDLE+KL KEE++ + L+QTL +LN
Sbjct: 193 TDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEDLCTQRMLNQTLLDLN 246
Score = 50.4 bits (119), Expect = 4e-06
Identities = 31/103 (30%), Positives = 56/103 (54%)
Frame = +2
Query: 74 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 253
E + +K+ +++ D E +RAE AES + E+ + +++ L L + + DKY
Sbjct: 127 EEVARKLVIIEGDLERTEERAELAESRCRKMGEQTRLMDQHLKCLSAAEEKYSQKEDKYE 186
Query: 254 ENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQE 382
E +K +KL+ +E +A AE VA L + I +E++L +E
Sbjct: 187 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKE 229
>ref|XP_001252597.2| PREDICTED: tropomyosin 4 [Bos taurus].
Length = 248
Score = 155 bits (393), Expect = 6e-38
Identities = 97/234 (41%), Positives = 125/234 (53%)
Frame = +2
Query: 215 KLKGTEDELDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXX 394
K++ + + D E K Q+K+E AE +V +LNRRIQLVEEEL+RAQER
Sbjct: 13 KIQVLQQQADDAEERAKCLQQKVEGERWAREQAEAEVVSLNRRIQLVEEELNRAQERLAT 72
Query: 395 XXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARK 574
R MKVIEN+A+KDEEKME+QE+QLKEAKHIAEEA RKYEEVARK
Sbjct: 73 ELQKLEEAEKAADESERVMKVIENQALKDEEKMELQEIQLKEAKHIAEEAHRKYEEVARK 132
Query: 575 LVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXX 754
LVI ++E +C + E+ + + +L
Sbjct: 133 LVIIEGDLERTEERAELAESRCRKMGEQTRLMDQHLKCLSAAEEKYSQKEDKYEEEIKIL 192
Query: 755 SDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 916
+DKLK KLEKTIDDLE+KL KEE++ + L+QTL +LN
Sbjct: 193 TDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEDLCTQRMLNQTLLDLN 246
Score = 50.4 bits (119), Expect = 4e-06
Identities = 31/103 (30%), Positives = 56/103 (54%)
Frame = +2
Query: 74 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 253
E + +K+ +++ D E +RAE AES + E+ + +++ L L + + DKY
Sbjct: 127 EEVARKLVIIEGDLERTEERAELAESRCRKMGEQTRLMDQHLKCLSAAEEKYSQKEDKYE 186
Query: 254 ENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQE 382
E +K +KL+ +E +A AE VA L + I +E++L +E
Sbjct: 187 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKE 229
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,369,746
Number of extensions: 730521
Number of successful extensions: 4819
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 4471
Number of HSP's successfully gapped: 31
Length of query: 465
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 359
Effective length of database: 14,174,046
Effective search space: 5088482514
Effective search space used: 5088482514
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0064_D07
(1397 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001138632.1| tropomyosin alpha-4 chain isoform 1 [Homo sa... 379 e-105
Alignment gi|NP_001018004.1| tropomyosin alpha-1 chain isoform 3 [Homo sa... 322 5e-88
Alignment gi|NP_998839.1| tropomyosin beta chain isoform 2 [Homo sapiens]. 304 1e-82
Alignment gi|NP_001018006.1| tropomyosin alpha-1 chain isoform 4 [Homo sa... 303 2e-82
Alignment gi|NP_001018005.1| tropomyosin alpha-1 chain isoform 1 [Homo sa... 299 5e-81
Alignment gi|NP_689476.2| tropomyosin alpha-3 chain isoform 1 [Homo sapie... 299 5e-81
Alignment gi|NP_003280.2| tropomyosin beta chain isoform 1 [Homo sapiens]. 297 2e-80
Alignment gi|NP_001018007.1| tropomyosin alpha-1 chain isoform 2 [Homo sa... 280 3e-75
Alignment gi|NP_000357.3| tropomyosin alpha-1 chain isoform 5 [Homo sapie... 279 4e-75
Alignment gi|NP_001018020.1| tropomyosin alpha-1 chain isoform 7 [Homo sa... 261 1e-69
>ref|NP_001138632.1| tropomyosin alpha-4 chain isoform 1 [Homo sapiens].
Length = 284
Score = 379 bits (973), Expect = e-105
Identities = 210/284 (73%), Positives = 214/284 (75%)
Frame = +2
Query: 71 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 250
MEAIKKKMQMLKLDKENAIDRAEQAE+DKKAAE+KCKQVEEELTHLQKKLKGTEDELDKY
Sbjct: 1 MEAIKKKMQMLKLDKENAIDRAEQAEADKKAAEDKCKQVEEELTHLQKKLKGTEDELDKY 60
Query: 251 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 430
SE+LKDAQEKLEL+EKKASDAEGDVAALNRRIQLVEEELDRAQER
Sbjct: 61 SEDLKDAQEKLELTEKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 431 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 610
RGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELERAE 180
Query: 611 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 790
VSELKCGDLEEELKNVTNNL SDKLK
Sbjct: 181 ERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYEEEIKLLSDKLKEAETRAE 240
Query: 791 XXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 922
KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI
Sbjct: 241 FAERTVAKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 284
>ref|NP_001018004.1| tropomyosin alpha-1 chain isoform 3 [Homo sapiens].
Length = 284
Score = 322 bits (825), Expect = 5e-88
Identities = 180/282 (63%), Positives = 199/282 (70%)
Frame = +2
Query: 71 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 250
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 251 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 430
SE LKDAQEKLEL+EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 431 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 610
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 611 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 790
+SE KC +LEEELK VTNNL SDKLK
Sbjct: 181 ERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDRYEEEIKVLSDKLKEAETRAE 240
Query: 791 XXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 916
KLEK+IDDLEEK+A AKEEN+ +HQ LDQTL ELN
Sbjct: 241 FAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQTLLELN 282
>ref|NP_998839.1| tropomyosin beta chain isoform 2 [Homo sapiens].
Length = 284
Score = 304 bits (779), Expect = 1e-82
Identities = 171/282 (60%), Positives = 193/282 (68%)
Frame = +2
Query: 71 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 250
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+EEE LQKKLKGTEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 251 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 430
SE++K+AQEKLE +EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SESVKEAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 431 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 610
RGMKVIENRAMKDEEKME+QEMQLKEAKHIAE++DRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSE 180
Query: 611 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 790
V+E + LEEEL+ + L +KLK
Sbjct: 181 ERAEVAESRARQLEEELRTMDQALKSLMASEEEYSTKEDKYEEEIKLLEEKLKEAETRAE 240
Query: 791 XXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 916
KLEKTIDDLEE LA AKEENV +HQTLDQTL ELN
Sbjct: 241 FAERSVAKLEKTIDDLEETLASAKEENVEIHQTLDQTLLELN 282
>ref|NP_001018006.1| tropomyosin alpha-1 chain isoform 4 [Homo sapiens].
Length = 284
Score = 303 bits (777), Expect = 2e-82
Identities = 172/282 (60%), Positives = 194/282 (68%)
Frame = +2
Query: 71 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 250
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 251 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 430
SE LKDAQEKLEL+EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 431 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 610
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 611 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 790
+SE + LEE+L+ + L SDKLK
Sbjct: 181 ERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDRYEEEIKVLSDKLKEAETRAE 240
Query: 791 XXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 916
KLEK+IDDLEEK+A AKEEN+ +HQ LDQTL ELN
Sbjct: 241 FAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQTLLELN 282
>ref|NP_001018005.1| tropomyosin alpha-1 chain isoform 1 [Homo sapiens].
Length = 284
Score = 299 bits (765), Expect = 5e-81
Identities = 169/284 (59%), Positives = 192/284 (67%)
Frame = +2
Query: 71 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 250
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 251 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 430
SE LKDAQEKLEL+EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 431 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 610
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 611 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 790
+SE KC +LEEELK VTNNL SDKLK
Sbjct: 181 ERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDRYEEEIKVLSDKLKEAETRAE 240
Query: 791 XXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 922
KLEK+IDDLE++L K + + + LD LN++ I
Sbjct: 241 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI 284
>ref|NP_689476.2| tropomyosin alpha-3 chain isoform 1 [Homo sapiens].
Length = 285
Score = 299 bits (765), Expect = 5e-81
Identities = 167/284 (58%), Positives = 193/284 (67%)
Frame = +2
Query: 71 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 250
MEAIKKKMQMLKLDKENA+DRAEQAE+++K AEE+ KQ+E+EL +QKKLKGTEDELDKY
Sbjct: 2 MEAIKKKMQMLKLDKENALDRAEQAEAEQKQAEERSKQLEDELAAMQKKLKGTEDELDKY 61
Query: 251 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 430
SE LKDAQEKLEL+EKKA+DAE +VA+LNRRIQLVEEELDRAQER
Sbjct: 62 SEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 121
Query: 431 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 610
RGMKVIENRA+KDEEKME+QE+QLKEAKHIAEEADRKYEEVARKLVI
Sbjct: 122 DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTE 181
Query: 611 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 790
++E KC +LEEELKNVTNNL +DKLK
Sbjct: 182 ERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYEEEIKILTDKLKEAETRAE 241
Query: 791 XXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 922
KLEKTIDDLE++L K + + + LD LN++ I
Sbjct: 242 FAERSVAKLEKTIDDLEDELYAQKLKYKAISEELDHALNDMTSI 285
>ref|NP_003280.2| tropomyosin beta chain isoform 1 [Homo sapiens].
Length = 284
Score = 297 bits (760), Expect = 2e-80
Identities = 165/284 (58%), Positives = 192/284 (67%)
Frame = +2
Query: 71 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 250
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+EEE LQKKLKGTEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 251 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 430
SE++K+AQEKLE +EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SESVKEAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 431 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 610
RGMKVIENRAMKDEEKME+QEMQLKEAKHIAE++DRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSE 180
Query: 611 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 790
V+E KCGDLEEELK VTNNL +KLK
Sbjct: 181 ERAEVAESKCGDLEEELKIVTNNLKSLEAQADKYSTKEDKYEEEIKLLEEKLKEAETRAE 240
Query: 791 XXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 922
KLEKTIDDLE+++ K + + + LD LN++ +
Sbjct: 241 FAERSVAKLEKTIDDLEDEVYAQKMKYKAISEELDNALNDITSL 284
>ref|NP_001018007.1| tropomyosin alpha-1 chain isoform 2 [Homo sapiens].
Length = 284
Score = 280 bits (715), Expect = 3e-75
Identities = 159/282 (56%), Positives = 186/282 (65%)
Frame = +2
Query: 71 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 250
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+EE++ +K L+ +EDE D+
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEEDIAAKEKLLRVSEDERDRV 60
Query: 251 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 430
E L A++ L +E+ A+ AE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 LEELHKAEDSLLAAEEAAAKAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 431 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 610
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 611 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 790
+SE KC +LEEELK VTNNL SDKLK
Sbjct: 181 ERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDRYEEEIKVLSDKLKEAETRAE 240
Query: 791 XXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 916
KLEK+IDDLEEK+A AKEEN+ +HQ LDQTL ELN
Sbjct: 241 FAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQTLLELN 282
>ref|NP_000357.3| tropomyosin alpha-1 chain isoform 5 [Homo sapiens].
Length = 284
Score = 279 bits (714), Expect = 4e-75
Identities = 160/281 (56%), Positives = 186/281 (66%)
Frame = +2
Query: 71 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 250
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 251 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 430
SE LKDAQEKLEL+EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 431 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 610
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 611 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 790
+SE + LEE+L+ + L SDKLK
Sbjct: 181 ERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDRYEEEIKVLSDKLKEAETRAE 240
Query: 791 XXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNEL 913
KLEK+IDDLE++L K + + + LD LN++
Sbjct: 241 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDM 281
>ref|NP_001018020.1| tropomyosin alpha-1 chain isoform 7 [Homo sapiens].
Length = 284
Score = 261 bits (667), Expect = 1e-69
Identities = 151/282 (53%), Positives = 181/282 (64%)
Frame = +2
Query: 71 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 250
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+EE++ +K L+ +EDE D+
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEEDIAAKEKLLRVSEDERDRV 60
Query: 251 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 430
E L A++ L +E+ A+ AE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 LEELHKAEDSLLAAEEAAAKAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 431 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 610
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 611 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 790
+SE + LEE+L+ + L SDKLK
Sbjct: 181 ERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDRYEEEIKVLSDKLKEAETRAE 240
Query: 791 XXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 916
KLEK+IDDLEEK+A AKEEN+ +HQ LDQTL ELN
Sbjct: 241 FAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQTLLELN 282
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,372,568
Number of extensions: 746159
Number of successful extensions: 5723
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 5113
Number of HSP's successfully gapped: 40
Length of query: 465
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 359
Effective length of database: 14,802,980
Effective search space: 5314269820
Effective search space used: 5314269820
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA OVRM1_0064_D07
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0064_D07
(1397 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852641.1| PREDICTED: similar to tropomyosin 1, alpha isof... 383 e-106
Alignment gi|XP_866109.1| PREDICTED: similar to tropomyosin 1, alpha isof... 362 e-100
Alignment gi|XP_866127.1| PREDICTED: similar to tropomyosin 4 isoform 1 i... 341 9e-94
Alignment gi|XP_866572.1| PREDICTED: similar to tropomyosin 2 (beta) isof... 325 8e-89
Alignment gi|XP_864999.1| PREDICTED: similar to tropomyosin 1, alpha isof... 323 3e-88
Alignment gi|XP_865847.1| PREDICTED: similar to tropomyosin 3, gamma isof... 307 1e-83
Alignment gi|XP_538720.2| PREDICTED: similar to tropomyosin 2 (beta) isof... 306 4e-83
Alignment gi|XP_864981.1| PREDICTED: similar to tropomyosin 1 alpha chain... 304 1e-82
Alignment gi|XP_864888.1| PREDICTED: similar to Tropomyosin 1 alpha chain... 300 2e-81
Alignment gi|XP_864907.1| PREDICTED: similar to Tropomyosin 1 alpha chain... 300 3e-81
>ref|XP_852641.1| PREDICTED: similar to tropomyosin 1, alpha isoform 2 [Canis
familiaris].
Length = 284
Score = 383 bits (984), Expect = e-106
Identities = 213/284 (75%), Positives = 214/284 (75%)
Frame = +2
Query: 71 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 250
MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY
Sbjct: 1 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 60
Query: 251 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 430
SENLKDAQEKLEL+EKKASDAEGDVAALNRRIQLVEEELDRAQER
Sbjct: 61 SENLKDAQEKLELTEKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 431 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 610
RGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELERAE 180
Query: 611 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 790
VSELKCGDLEEELKNVTNNL SDKLK
Sbjct: 181 ERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYEEEIKLLSDKLKEAETRAE 240
Query: 791 XXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 922
KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI
Sbjct: 241 FAERTVAKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 284
>ref|XP_866109.1| PREDICTED: similar to tropomyosin 1, alpha isoform 4 [Canis
familiaris].
Length = 328
Score = 362 bits (929), Expect = e-100
Identities = 213/328 (64%), Positives = 214/328 (65%), Gaps = 44/328 (13%)
Frame = +2
Query: 71 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQ---------------------- 184
MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQ
Sbjct: 1 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQLDLEAKSAFITYFLREVREKKS 60
Query: 185 ----------------------VEEELTHLQKKLKGTEDELDKYSENLKDAQEKLELSEK 298
VEEELTHLQKKLKGTEDELDKYSENLKDAQEKLEL+EK
Sbjct: 61 ERDAGNQAWHKGLLTRPPVCPQVEEELTHLQKKLKGTEDELDKYSENLKDAQEKLELTEK 120
Query: 299 KASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMK 478
KASDAEGDVAALNRRIQLVEEELDRAQER RGMKVIENRAMK
Sbjct: 121 KASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRAMK 180
Query: 479 DEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEE 658
DEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVI VSELKCGDLEEE
Sbjct: 181 DEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELERAEERAEVSELKCGDLEEE 240
Query: 659 LKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDL 838
LKNVTNNL SDKLK KLEKTIDDL
Sbjct: 241 LKNVTNNLKSLEAASEKYSEKEDKYEEEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDL 300
Query: 839 EEKLAQAKEENVGLHQTLDQTLNELNCI 922
EEKLAQAKEENVGLHQTLDQTLNELNCI
Sbjct: 301 EEKLAQAKEENVGLHQTLDQTLNELNCI 328
>ref|XP_866127.1| PREDICTED: similar to tropomyosin 4 isoform 1 isoform 5 [Canis
familiaris].
Length = 284
Score = 341 bits (875), Expect = 9e-94
Identities = 192/284 (67%), Positives = 201/284 (70%)
Frame = +2
Query: 71 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 250
MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY
Sbjct: 1 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 60
Query: 251 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 430
SENLKDAQEKLEL+EKKASDAEGDVAALNRRIQLVEEELDRAQER
Sbjct: 61 SENLKDAQEKLELTEKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 431 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 610
RGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELERAE 180
Query: 611 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 790
VSELKCGDLEEELKNVTNNL SDKLK
Sbjct: 181 ERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYEEEIKLLSDKLKEAETRAE 240
Query: 791 XXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 922
KLEKTIDDLE++L K + + + LD LN++ +
Sbjct: 241 FAERTVAKLEKTIDDLEDELYAQKLKYKAISEELDHALNDMTSL 284
>ref|XP_866572.1| PREDICTED: similar to tropomyosin 2 (beta) isoform 2 isoform 15
[Canis familiaris].
Length = 284
Score = 325 bits (832), Expect = 8e-89
Identities = 181/282 (64%), Positives = 199/282 (70%)
Frame = +2
Query: 71 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 250
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+EEE LQKKLKGTEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 251 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 430
SE++KDAQEKLE +EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 431 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 610
RGMKVIENRAMKDEEKME+QEMQLKEAKHIAE++DRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSE 180
Query: 611 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 790
V+E KCGDLEEELK VTNNL +KLK
Sbjct: 181 ERAEVAESKCGDLEEELKIVTNNLKSLEAQADKYSTKEDKYEEEIKLLEEKLKEAETRAE 240
Query: 791 XXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 916
KLEKTIDDLEE LA AKEENV +HQTLDQTL ELN
Sbjct: 241 FAERSVAKLEKTIDDLEETLASAKEENVEIHQTLDQTLLELN 282
>ref|XP_864999.1| PREDICTED: similar to tropomyosin 1, alpha isoform 11 [Canis
familiaris].
Length = 284
Score = 323 bits (827), Expect = 3e-88
Identities = 180/282 (63%), Positives = 199/282 (70%)
Frame = +2
Query: 71 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 250
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 251 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 430
SE LKDAQEKLEL+EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 431 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 610
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 611 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 790
+SE KC +LEEELK VTNNL SDKLK
Sbjct: 181 ERAELSESKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 240
Query: 791 XXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 916
KLEK+IDDLEEK+A AKEEN+ +HQ LDQTL ELN
Sbjct: 241 FAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQTLLELN 282
>ref|XP_865847.1| PREDICTED: similar to tropomyosin 3, gamma isoform 20 [Canis
familiaris].
Length = 285
Score = 307 bits (787), Expect = 1e-83
Identities = 172/282 (60%), Positives = 196/282 (69%)
Frame = +2
Query: 71 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 250
MEAIKKKMQMLKLDKENA+DRAEQAE+++K AEE+ KQ+E+EL +QKKLKGTEDELDKY
Sbjct: 2 MEAIKKKMQMLKLDKENALDRAEQAEAEQKQAEERSKQLEDELAAMQKKLKGTEDELDKY 61
Query: 251 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 430
SE LKDAQEKLEL+EKKA+DAE +VA+LNRRIQLVEEELDRAQER
Sbjct: 62 SEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 121
Query: 431 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 610
RGMKVIENRA+KDEEKME+QE+QLKEAKHIAEEADRKYEEVARKLVI
Sbjct: 122 DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTE 181
Query: 611 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 790
++E KC +LEEELKNVTNNL +DKLK
Sbjct: 182 ERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYEEEIKILTDKLKEAETRAE 241
Query: 791 XXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 916
KLEKTIDDLE+KL KEE++ + LDQTL +LN
Sbjct: 242 FAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQTLLDLN 283
>ref|XP_538720.2| PREDICTED: similar to tropomyosin 2 (beta) isoform 2 isoform 1
[Canis familiaris].
Length = 284
Score = 306 bits (783), Expect = 4e-83
Identities = 172/282 (60%), Positives = 193/282 (68%)
Frame = +2
Query: 71 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 250
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+EEE LQKKLKGTEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 251 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 430
SE++KDAQEKLE +EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 431 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 610
RGMKVIENRAMKDEEKME+QEMQLKEAKHIAE++DRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSE 180
Query: 611 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 790
V+E + LEEEL+ + L +KLK
Sbjct: 181 ERAEVAESRARQLEEELRTMDQALKSLMASEEEYSTKEDKYEEEIKLLEEKLKEAETRAE 240
Query: 791 XXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 916
KLEKTIDDLEE LA AKEENV +HQTLDQTL ELN
Sbjct: 241 FAERSVAKLEKTIDDLEETLASAKEENVEIHQTLDQTLLELN 282
>ref|XP_864981.1| PREDICTED: similar to tropomyosin 1 alpha chain isoform 4 isoform
10 [Canis familiaris].
Length = 284
Score = 304 bits (779), Expect = 1e-82
Identities = 172/282 (60%), Positives = 194/282 (68%)
Frame = +2
Query: 71 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 250
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 251 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 430
SE LKDAQEKLEL+EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 431 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 610
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 611 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 790
+SE + LEE+L+ + L SDKLK
Sbjct: 181 ERAELSESQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDKYEEEIKVLSDKLKEAETRAE 240
Query: 791 XXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 916
KLEK+IDDLEEK+A AKEEN+ +HQ LDQTL ELN
Sbjct: 241 FAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQTLLELN 282
>ref|XP_864888.1| PREDICTED: similar to Tropomyosin 1 alpha chain (Alpha-tropomyosin)
isoform 5 [Canis familiaris].
Length = 281
Score = 300 bits (768), Expect = 2e-81
Identities = 171/280 (61%), Positives = 190/280 (67%)
Frame = +2
Query: 71 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 250
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 251 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 430
SE LKDAQEKLEL+EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 431 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 610
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 611 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 790
+SE KC +LEEELK VTNNL SDKLK
Sbjct: 181 ERAELSESKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 240
Query: 791 XXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNE 910
KLEK+IDDLE++L Q E+N L L LNE
Sbjct: 241 FAERSVTKLEKSIDDLEDQLYQQLEQNRRLTNQLKLALNE 280
>ref|XP_864907.1| PREDICTED: similar to Tropomyosin 1 alpha chain (Alpha-tropomyosin)
isoform 6 [Canis familiaris].
Length = 284
Score = 300 bits (767), Expect = 3e-81
Identities = 169/284 (59%), Positives = 192/284 (67%)
Frame = +2
Query: 71 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 250
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 251 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 430
SE LKDAQEKLEL+EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 431 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 610
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 611 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 790
+SE KC +LEEELK VTNNL SDKLK
Sbjct: 181 ERAELSESKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 240
Query: 791 XXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 922
KLEK+IDDLE++L K + + + LD LN++ I
Sbjct: 241 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI 284
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,100,001
Number of extensions: 761434
Number of successful extensions: 7001
Number of sequences better than 1.0e-05: 83
Number of HSP's gapped: 5839
Number of HSP's successfully gapped: 158
Length of query: 465
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 359
Effective length of database: 15,340,888
Effective search space: 5507378792
Effective search space used: 5507378792
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0064_D07
(1397 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_077745.2| tropomyosin alpha-1 chain isoform 3 [Mus muscul... 322 4e-88
Alignment gi|NP_001157722.1| tropomyosin alpha-1 chain isoform 4 [Mus mus... 303 2e-82
Alignment gi|NP_001157720.1| tropomyosin alpha-1 chain isoform 1 [Mus mus... 299 4e-81
Alignment gi|NP_033442.2| tropomyosin beta chain [Mus musculus]. 298 5e-81
Alignment gi|NP_001157727.1| tropomyosin alpha-1 chain isoform 9 [Mus mus... 297 1e-80
Alignment gi|NP_071709.2| tropomyosin alpha-3 chain [Mus musculus]. 290 2e-78
Alignment gi|NP_001157723.1| tropomyosin alpha-1 chain isoform 5 [Mus mus... 280 1e-75
Alignment gi|NP_001157721.1| tropomyosin alpha-1 chain isoform 2 [Mus mus... 280 3e-75
Alignment gi|NP_001001491.1| tropomyosin alpha-4 chain [Mus musculus]. 233 3e-61
Alignment gi|NP_001157724.1| tropomyosin alpha-1 chain isoform 6 [Mus mus... 205 8e-53
>ref|NP_077745.2| tropomyosin alpha-1 chain isoform 3 [Mus musculus].
Length = 284
Score = 322 bits (825), Expect = 4e-88
Identities = 180/282 (63%), Positives = 199/282 (70%)
Frame = +2
Query: 71 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 250
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 251 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 430
SE LKDAQEKLEL+EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 431 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 610
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 611 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 790
+SE KC +LEEELK VTNNL SDKLK
Sbjct: 181 ERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 240
Query: 791 XXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 916
KLEK+IDDLEEK+A AKEEN+ +HQ LDQTL ELN
Sbjct: 241 FAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQTLLELN 282
>ref|NP_001157722.1| tropomyosin alpha-1 chain isoform 4 [Mus musculus].
Length = 284
Score = 303 bits (777), Expect = 2e-82
Identities = 172/282 (60%), Positives = 194/282 (68%)
Frame = +2
Query: 71 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 250
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 251 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 430
SE LKDAQEKLEL+EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 431 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 610
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 611 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 790
+SE + LEE+L+ + L SDKLK
Sbjct: 181 ERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDKYEEEIKVLSDKLKEAETRAE 240
Query: 791 XXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 916
KLEK+IDDLEEK+A AKEEN+ +HQ LDQTL ELN
Sbjct: 241 FAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQTLLELN 282
>ref|NP_001157720.1| tropomyosin alpha-1 chain isoform 1 [Mus musculus].
Length = 284
Score = 299 bits (765), Expect = 4e-81
Identities = 169/284 (59%), Positives = 192/284 (67%)
Frame = +2
Query: 71 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 250
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 251 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 430
SE LKDAQEKLEL+EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 431 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 610
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 611 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 790
+SE KC +LEEELK VTNNL SDKLK
Sbjct: 181 ERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 240
Query: 791 XXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 922
KLEK+IDDLE++L K + + + LD LN++ I
Sbjct: 241 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI 284
>ref|NP_033442.2| tropomyosin beta chain [Mus musculus].
Length = 284
Score = 298 bits (764), Expect = 5e-81
Identities = 166/284 (58%), Positives = 192/284 (67%)
Frame = +2
Query: 71 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 250
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+EEE LQKKLKGTEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 251 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 430
SE++KDAQEKLE +EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 431 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 610
RGMKVIENRAMKDEEKME+QEMQLKEAKHIAE++DRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSE 180
Query: 611 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 790
V+E KCGDLEEELK VTNNL +KLK
Sbjct: 181 ERAEVAESKCGDLEEELKIVTNNLKSLEAQADKYSTKEDKYEEEIKLLEEKLKEAETRAE 240
Query: 791 XXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 922
KLEKTIDDLE+++ K + + + LD LN++ +
Sbjct: 241 FAERSVAKLEKTIDDLEDEVYAQKMKYKAISEELDNALNDITSL 284
>ref|NP_001157727.1| tropomyosin alpha-1 chain isoform 9 [Mus musculus].
Length = 281
Score = 297 bits (761), Expect = 1e-80
Identities = 170/280 (60%), Positives = 189/280 (67%)
Frame = +2
Query: 71 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 250
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 251 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 430
SE LKDAQEKLEL+EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 431 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 610
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 611 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 790
+SE KC +LEEELK VTNNL SDKLK
Sbjct: 181 ERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 240
Query: 791 XXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNE 910
KLEK+IDDLE++L E+N L L LNE
Sbjct: 241 FAERSVTKLEKSIDDLEDQLYHQLEQNRRLTNELKLALNE 280
>ref|NP_071709.2| tropomyosin alpha-3 chain [Mus musculus].
Length = 284
Score = 290 bits (741), Expect = 2e-78
Identities = 161/282 (57%), Positives = 192/282 (68%)
Frame = +2
Query: 71 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 250
MEAIKKKMQMLKLDKEN +DRAEQAE+++K AEE+ KQ+E+EL +QKKLKGTEDELDKY
Sbjct: 1 MEAIKKKMQMLKLDKENVLDRAEQAEAEQKQAEERSKQLEDELATMQKKLKGTEDELDKY 60
Query: 251 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 430
SE LKDAQEKLEL+EKKA+DAE +VA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 431 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 610
RGMKVIENRA+KDEEKME+QE+QLKEAKHIAEEADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTE 180
Query: 611 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 790
++E +C +++E+++ + NL +DKLK
Sbjct: 181 ERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKYEEEIKILTDKLKEAETRAE 240
Query: 791 XXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 916
KLEKTIDDLE+KL KEE++ + LDQTL +LN
Sbjct: 241 FAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQTLLDLN 282
>ref|NP_001157723.1| tropomyosin alpha-1 chain isoform 5 [Mus musculus].
Length = 284
Score = 280 bits (717), Expect = 1e-75
Identities = 161/284 (56%), Positives = 187/284 (65%)
Frame = +2
Query: 71 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 250
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 251 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 430
SE LKDAQEKLEL+EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 431 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 610
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 611 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 790
+SE + LEE+L+ + L SDKLK
Sbjct: 181 ERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDKYEEEIKVLSDKLKEAETRAE 240
Query: 791 XXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 922
KLEK+IDDLE++L K + + + LD LN++ I
Sbjct: 241 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI 284
>ref|NP_001157721.1| tropomyosin alpha-1 chain isoform 2 [Mus musculus].
Length = 284
Score = 280 bits (715), Expect = 3e-75
Identities = 158/282 (56%), Positives = 186/282 (65%)
Frame = +2
Query: 71 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 250
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+EE++ +K L+ +EDE D+
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEEDIAAKEKLLRASEDERDRV 60
Query: 251 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 430
E L A++ L +++ A+ AE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 LEELHKAEDSLLAADETAAKAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 431 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 610
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 611 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 790
+SE KC +LEEELK VTNNL SDKLK
Sbjct: 181 ERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 240
Query: 791 XXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 916
KLEK+IDDLEEK+A AKEEN+ +HQ LDQTL ELN
Sbjct: 241 FAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQTLLELN 282
>ref|NP_001001491.1| tropomyosin alpha-4 chain [Mus musculus].
Length = 248
Score = 233 bits (594), Expect = 3e-61
Identities = 133/242 (54%), Positives = 149/242 (61%)
Frame = +2
Query: 197 LTHLQKKLKGTEDELDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRA 376
L +++K++ + + D + + Q +L+ ++ AEGD AALNRRIQL+EEELDRA
Sbjct: 7 LEAVKRKIQALQQQADDAEDRAQGLQRELDGERERREKAEGDAAALNRRIQLLEEELDRA 66
Query: 377 QERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKY 556
QE+ RGMKVIENRAMKDEEKMEI EMQLKEAKHI +EADRKY
Sbjct: 67 QEQLATALQNLEEAEKAADESERGMKVIENRAMKDEEKMEILEMQLKEAKHITDEADRKY 126
Query: 557 EEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXX 736
EEVARKLVI VSELKCGDLEEELKNVTNNL
Sbjct: 127 EEVARKLVILEGELKRAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYE 186
Query: 737 XXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 916
SDKLK KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN
Sbjct: 187 EEIKLLSDKLKEAETRAEFAERTVSKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 246
Query: 917 CI 922
CI
Sbjct: 247 CI 248
Score = 53.5 bits (127), Expect = 4e-07
Identities = 33/103 (32%), Positives = 58/103 (56%)
Frame = +2
Query: 74 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 253
E + +K+ +L+ + + A +RAE +E EE+ K V L L+ + ++ DKY
Sbjct: 127 EEVARKLVILEGELKRAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYE 186
Query: 254 ENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQE 382
E +K +KL+ +E +A AE V+ L + I +EE+L +A+E
Sbjct: 187 EEIKLLSDKLKEAETRAEFAERTVSKLEKTIDDLEEKLAQAKE 229
>ref|NP_001157724.1| tropomyosin alpha-1 chain isoform 6 [Mus musculus].
Length = 248
Score = 205 bits (521), Expect = 8e-53
Identities = 120/240 (50%), Positives = 140/240 (58%)
Frame = +2
Query: 197 LTHLQKKLKGTEDELDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRA 376
L +++K++ +++ D E Q +L+ K AE DVA+LNRRIQLVEEELDRA
Sbjct: 7 LEAVRRKIRSLQEQADAAEERAGSLQRELDQERKLRETAEADVASLNRRIQLVEEELDRA 66
Query: 377 QERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKY 556
QER RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKY
Sbjct: 67 QERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKY 126
Query: 557 EEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXX 736
EEVARKLVI +SE KC +LEEELK VTNNL
Sbjct: 127 EEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYE 186
Query: 737 XXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 916
SDKLK KLEK+IDDLEEK+A AKEEN+ +HQ LDQTL ELN
Sbjct: 187 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQTLLELN 246
Score = 57.0 bits (136), Expect = 3e-08
Identities = 33/103 (32%), Positives = 56/103 (54%)
Frame = +2
Query: 74 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 253
E + +K+ +++ D E A +RAE +E EE+ K V L L+ + + + DKY
Sbjct: 127 EEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYE 186
Query: 254 ENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQE 382
E +K +KL+ +E +A AE V L + I +EE++ A+E
Sbjct: 187 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKE 229
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,026,406
Number of extensions: 634908
Number of successful extensions: 4599
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 4162
Number of HSP's successfully gapped: 23
Length of query: 465
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 360
Effective length of database: 12,463,779
Effective search space: 4486960440
Effective search space used: 4486960440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0064_D07
(1397 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001123419.1| tropomyosin beta chain [Sus scrofa]. 299 2e-81
Alignment gi|XP_003361667.1| PREDICTED: tropomyosin alpha-3 chain-like is... 298 6e-81
Alignment gi|NP_001090952.1| tropomyosin alpha-1 chain [Sus scrofa]. 292 3e-79
Alignment gi|XP_003361668.1| PREDICTED: tropomyosin alpha-3 chain-like is... 281 5e-76
Alignment gi|NP_999500.1| tropomyosin alpha-4 chain [Sus scrofa]. 243 1e-64
Alignment gi|NP_001001632.1| tropomyosin alpha-3 chain [Sus scrofa]. 174 8e-44
>ref|NP_001123419.1| tropomyosin beta chain [Sus scrofa].
Length = 287
Score = 299 bits (766), Expect = 2e-81
Identities = 171/285 (60%), Positives = 193/285 (67%), Gaps = 3/285 (1%)
Frame = +2
Query: 71 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 250
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+EEE LQKKLKGTEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 251 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 430
SE++KDAQEKLE +EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 431 XXXXRGMKVIENRAMKDEEKMEI---QEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXX 601
RG+KVIENRAMKDEEKME+ QEMQLKEAKHIAE++DRKYEEVARKLVI
Sbjct: 121 DESERGLKVIENRAMKDEEKMELQEMQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELE 180
Query: 602 XXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXX 781
V+E + LEEEL+ + L +KLK
Sbjct: 181 RSEERAEVAESRARQLEEELRTMDQALKSLMASEEEYSTKEDKYEEEIKLLEEKLKEAET 240
Query: 782 XXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 916
KLEKTIDDLEE LA AKEENV +HQTLDQTL ELN
Sbjct: 241 RAEFAERSVAKLEKTIDDLEETLASAKEENVEIHQTLDQTLLELN 285
>ref|XP_003361667.1| PREDICTED: tropomyosin alpha-3 chain-like isoform 1 [Sus scrofa].
Length = 284
Score = 298 bits (762), Expect = 6e-81
Identities = 166/281 (59%), Positives = 192/281 (68%)
Frame = +2
Query: 71 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 250
MEAIKKKMQMLKLDKENA+DRAEQAE+++K AEE+ KQ+E+EL +QKKLKGTEDELDKY
Sbjct: 1 MEAIKKKMQMLKLDKENALDRAEQAEAEQKQAEERSKQLEDELAAMQKKLKGTEDELDKY 60
Query: 251 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 430
SE LKDAQEKLEL+EKKA+DAE +VA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 431 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 610
RGMKVIENRA+KDEEKME+QE+QLKEAKHIAEEADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTE 180
Query: 611 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 790
++E KC +LEEELKNVTNNL +DKLK
Sbjct: 181 ERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYEEEIKILTDKLKEAETRAE 240
Query: 791 XXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNEL 913
KLEKTIDDLE++L K + + + LD LN++
Sbjct: 241 FAERSVAKLEKTIDDLEDELYAQKLKYKAISEELDHALNDM 281
>ref|NP_001090952.1| tropomyosin alpha-1 chain [Sus scrofa].
Length = 284
Score = 292 bits (748), Expect = 3e-79
Identities = 166/284 (58%), Positives = 190/284 (66%)
Frame = +2
Query: 71 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 250
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ K++E+EL LQKKLK TEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKRLEDELVSLQKKLKATEDELDKY 60
Query: 251 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 430
SE KDAQEKLEL+EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEAPKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 431 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 610
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 611 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 790
+SE KC +LEEELK VTNNL SDKLK
Sbjct: 181 ERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 240
Query: 791 XXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 922
KLEK+IDDLE++L K + + + LD LN++ I
Sbjct: 241 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI 284
>ref|XP_003361668.1| PREDICTED: tropomyosin alpha-3 chain-like isoform 2 [Sus scrofa].
Length = 284
Score = 281 bits (720), Expect = 5e-76
Identities = 156/281 (55%), Positives = 189/281 (67%)
Frame = +2
Query: 71 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 250
MEAIKKKMQMLKLDKENA+DRAEQAE+++K AEE+ KQ+E+EL +QKKLKGTEDELDKY
Sbjct: 1 MEAIKKKMQMLKLDKENALDRAEQAEAEQKQAEERSKQLEDELAAMQKKLKGTEDELDKY 60
Query: 251 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 430
SE LKDAQEKLEL+EKKA+DAE +VA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 431 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 610
RGMKVIENRA+KDEEKME+QE+QLKEAKHIAEEADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTE 180
Query: 611 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 790
++E +C +++E+++ + NL +DKLK
Sbjct: 181 ERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKYEEEIKILTDKLKEAETRAE 240
Query: 791 XXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNEL 913
KLEKTIDDLE++L K + + + LD LN++
Sbjct: 241 FAERSVAKLEKTIDDLEDELYAQKLKYKAISEELDHALNDM 281
>ref|NP_999500.1| tropomyosin alpha-4 chain [Sus scrofa].
Length = 248
Score = 243 bits (621), Expect = 1e-64
Identities = 139/242 (57%), Positives = 153/242 (63%)
Frame = +2
Query: 197 LTHLQKKLKGTEDELDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRA 376
L +++K++ + + D+ + + Q +L+ ++ AEGDVAALNRRIQLVEEELDRA
Sbjct: 7 LEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVEEELDRA 66
Query: 377 QERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKY 556
QER RGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKY
Sbjct: 67 QERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKY 126
Query: 557 EEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXX 736
EEVARKLVI VSELKCGDLEEELKNVTNNL
Sbjct: 127 EEVARKLVILEGELERAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYE 186
Query: 737 XXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 916
SDKLK KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN
Sbjct: 187 EEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 246
Query: 917 CI 922
CI
Sbjct: 247 CI 248
Score = 56.2 bits (134), Expect = 4e-08
Identities = 35/103 (33%), Positives = 58/103 (56%)
Frame = +2
Query: 74 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 253
E + +K+ +L+ + E A +RAE +E EE+ K V L L+ + ++ DKY
Sbjct: 127 EEVARKLVILEGELERAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYE 186
Query: 254 ENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQE 382
E +K +KL+ +E +A AE VA L + I +EE+L +A+E
Sbjct: 187 EEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKE 229
>ref|NP_001001632.1| tropomyosin alpha-3 chain [Sus scrofa].
Length = 248
Score = 174 bits (442), Expect = 8e-44
Identities = 102/237 (43%), Positives = 134/237 (56%)
Frame = +2
Query: 206 LQKKLKGTEDELDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQER 385
+++K++ + + D E + Q ++E + AE +VA+LNRRIQLVEEELDRAQER
Sbjct: 10 VKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVEEELDRAQER 69
Query: 386 XXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEV 565
RGMKVIENRA+KDEEKME+QE+QLKEAKHIAEEADRKYEEV
Sbjct: 70 LATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEV 129
Query: 566 ARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXX 745
ARKLVI ++E +C +++E+++ + NL
Sbjct: 130 ARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKYEEEI 189
Query: 746 XXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 916
+DKLK KLEKTIDDLE+KL KEE++ + LDQTL +LN
Sbjct: 190 KILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQTLLDLN 246
Score = 52.0 bits (123), Expect = 8e-07
Identities = 31/103 (30%), Positives = 57/103 (55%)
Frame = +2
Query: 74 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 253
E + +K+ +++ D E +RAE AES + +E+ + +++ L L + + DKY
Sbjct: 127 EEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKYE 186
Query: 254 ENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQE 382
E +K +KL+ +E +A AE VA L + I +E++L +E
Sbjct: 187 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKE 229
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,726,923
Number of extensions: 466094
Number of successful extensions: 2972
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2760
Number of HSP's successfully gapped: 10
Length of query: 465
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 363
Effective length of database: 8,804,438
Effective search space: 3196010994
Effective search space used: 3196010994
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0064_D07
(1397 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 1031 0.0
Sscrofa_Chr01 123 3e-25
gb|GL894998.2| Sus scrofa unplaced genomic scaffold ChrUScaf2882 84 2e-13
Sscrofa_Chr04 84 2e-13
Sscrofa_Chr13 70 4e-09
>Sscrofa_Chr02
|| Length = 162569375
Score = 1031 bits (520), Expect = 0.0
Identities = 534/541 (98%)
Strand = Plus / Plus
Query: 841 agaaaaacttgcccaggccaaagaagagaacgtgggcttacatcagacactggatcagac 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61172133 agaaaaacttgcccaggccaaagaagagaacgtgggcttacatcagacactggatcagac 61172192
Query: 901 actaaacgaactaaactgtatataaccaaaacagaagagtctcgttccatcagaaactcc 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61172193 actaaacgaactaaactgtatataaccaaaacagaagagtctcgttccatcagaaactcc 61172252
Query: 961 agagctacgtgtttttctcttctcttgtaagaagtttcttttgttattgcctctttgctt 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61172253 agagctacgtgtttttctcttctcttgtaagaagtttcttttgttattgcctctttgctt 61172312
Query: 1021 tgctggaaatgtcaagcaaattatgaatacgtgaccaaatattttgtatcagaaaagctt 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61172313 tgctggaaatgtcaagcaaattatgaatacgtgaccaaatattttgtatcagaaaagctt 61172372
Query: 1081 tgagcaccagttaaatctattccttccnnnnnnncaagtggcaccagctttttcagctct 1140
||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 61172373 tgagcaccagttaaatctattccttcctttttttcaagtggcaccagctttttcagctct 61172432
Query: 1141 atttttatccttaaattgcatttattcctaaagtaggcagggtatttcatattgagcata 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61172433 atttttatccttaaattgcatttattcctaaagtaggcagggtatttcatattgagcata 61172492
Query: 1201 ctctcttaagactgagggcatttggttcctgggagaatagacaaccccacactttaaaaa 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61172493 ctctcttaagactgagggcatttggttcctgggagaatagacaaccccacactttaaaaa 61172552
Query: 1261 tacagactccaatgtctagtcatgggtcaatttaaaaagttgaagaatatccactgctgg 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61172553 tacagactccaatgtctagtcatgggtcaatttaaaaagttgaagaatatccactgctgg 61172612
Query: 1321 tcacactataggaggccagggaccatcacattaaaatgagtggggattttccagccagag 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61172613 tcacactataggaggccagggaccatcacattaaaatgagtggggattttccagccagag 61172672
Query: 1381 t 1381
|
Sbjct: 61172673 t 61172673
Score = 363 bits (183), Expect = 2e-97
Identities = 186/187 (99%)
Strand = Plus / Plus
Query: 1 ctcactcgacaccgacgccgctgccgccgcaggcccctccacgcccacaccccctaccca 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61150664 ctcactcgaccccgacgccgctgccgccgcaggcccctccacgcccacaccccctaccca 61150723
Query: 61 ctgcccagccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61150724 ctgcccagccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaa 61150783
Query: 121 cgccatcgaccgggccgagcaggcggagtcggataagaaagctgctgaggagaagtgcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61150784 cgccatcgaccgggccgagcaggcggagtcggataagaaagctgctgaggagaagtgcaa 61150843
Query: 181 gcaggtg 187
|||||||
Sbjct: 61150844 gcaggtg 61150850
Score = 266 bits (134), Expect = 3e-68
Identities = 134/134 (100%)
Strand = Plus / Plus
Query: 311 gccgaaggggatgtagcagctctcaatcggcgcatccaactcgttgaggaggagttggac 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61161338 gccgaaggggatgtagcagctctcaatcggcgcatccaactcgttgaggaggagttggac 61161397
Query: 371 agggctcaggaacgactggccacagccctgcagaagcttgaggaggcagaaaaggctgca 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61161398 agggctcaggaacgactggccacagccctgcagaagcttgaggaggcagaaaaggctgca 61161457
Query: 431 gatgagagcgagag 444
||||||||||||||
Sbjct: 61161458 gatgagagcgagag 61161471
Score = 250 bits (126), Expect = 2e-63
Identities = 129/130 (99%)
Strand = Plus / Plus
Query: 182 caggtggaggaggagctgacgcacctccagaagaagctgaaggggacagaggatgagctg 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61156130 caggtggaggaggagctgacgcacctccagaagaagctgaaggggacagaggatgagctg 61156189
Query: 242 gacaaatactccgagaacctgaaggacgcgcaggaaaagctggagttgagcgagaagaaa 301
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 61156190 gacaaatactccgagaacctgaaggacgcgcaggaaaagctggagctgagcgagaagaaa 61156249
Query: 302 gcctccgacg 311
||||||||||
Sbjct: 61156250 gcctccgacg 61156259
Score = 242 bits (122), Expect = 4e-61
Identities = 122/122 (100%)
Strand = Plus / Plus
Query: 443 agaggaatgaaggtgatagaaaaccgggccatgaaagatgaggagaagatggagattcag 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61163820 agaggaatgaaggtgatagaaaaccgggccatgaaagatgaggagaagatggagattcag 61163879
Query: 503 gagatgcagctcaaagaggccaagcacattgccgaggaggccgaccgcaaatacgaggag 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61163880 gagatgcagctcaaagaggccaagcacattgccgaggaggccgaccgcaaatacgaggag 61163939
Query: 563 gt 564
||
Sbjct: 61163940 gt 61163941
Score = 145 bits (73), Expect = 8e-32
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 561 aggtagctcgtaagttggtcatcctggagggcgagctggagagggcagaggagcgtgccg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61164502 aggtagctcgtaagttggtcatcctggagggcgagctggagagggcagaggagcgtgccg 61164561
Query: 621 aggtgtctgaact 633
|||||||||||||
Sbjct: 61164562 aggtgtctgaact 61164574
Score = 143 bits (72), Expect = 3e-31
Identities = 75/76 (98%)
Strand = Plus / Plus
Query: 634 aaaatgtggtgacctggaagaagaactcaagaatgtcaccaacaacctgaagtcgctaga 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61165635 aaaatgtggtgacctggaagaagaactcaagaatgtcaccaacaacctgaagtcgctaga 61165694
Query: 694 ggccgcatctgaaaag 709
||| ||||||||||||
Sbjct: 61165695 ggctgcatctgaaaag 61165710
Score = 143 bits (72), Expect = 3e-31
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 771 aggctgagacccgtgctgaatttgcagagagaacagttgcaaaactggaaaagaccatcg 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61167561 aggctgagacccgtgctgaatttgcagagagaacagttgcaaaactggaaaagaccatcg 61167620
Query: 831 atgacctggaag 842
||||||||||||
Sbjct: 61167621 atgacctggaag 61167632
Score = 131 bits (66), Expect = 1e-27
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 708 agtattctgaaaaggaggataaatatgaagaagagattaaacttctgtctgacaaactga 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61167413 agtattctgaaaaggaggataaatatgaagaagagattaaacttctgtctgacaaactga 61167472
Query: 768 aagagg 773
||||||
Sbjct: 61167473 aagagg 61167478
>Sscrofa_Chr01
|| Length = 315321322
Score = 123 bits (62), Expect = 3e-25
Identities = 107/122 (87%)
Strand = Plus / Minus
Query: 443 agaggaatgaaggtgatagaaaaccgggccatgaaagatgaggagaagatggagattcag 502
|||||||||||||| || |||||||| |||||||| |||||||| ||||||||| | |||
Sbjct: 264130765 agaggaatgaaggtcattgaaaaccgagccatgaaggatgaggaaaagatggagctgcag 264130706
Query: 503 gagatgcagctcaaagaggccaagcacattgccgaggaggccgaccgcaaatacgaggag 562
||||||||||| || |||||||||||||| || ||||| | ||||||||||| ||||||
Sbjct: 264130705 gagatgcagctgaaggaggccaagcacatcgctgaggattcagaccgcaaatatgaggag 264130646
Query: 563 gt 564
||
Sbjct: 264130645 gt 264130644
Score = 119 bits (60), Expect = 4e-24
Identities = 75/80 (93%)
Strand = Plus / Minus
Query: 69 ccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgccatcg 128
||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 264134556 ccatggatgccatcaagaagaagatgcagatgctaaagctggacaaggagaatgccatcg 264134497
Query: 129 accgggccgagcaggcggag 148
|||| || ||||||||||||
Sbjct: 264134496 accgtgctgagcaggcggag 264134477
Score = 99.6 bits (50), Expect = 4e-18
Identities = 101/118 (85%)
Strand = Plus / Minus
Query: 69 ccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgccatcg 128
||||||| |||||||||||||||||||| ||||| ||||| ||||||||||||||| | |
Sbjct: 120240068 ccatggacgccatcaagaagaagatgcaaatgctcaagctcgacaaggagaacgccttgg 120240009
Query: 129 accgggccgagcaggcggagtcggataagaaagctgctgaggagaagtgcaagcaggt 186
| || || |||||||||||| | |||||||| || || ||||| | | ||||||||||
Sbjct: 120240008 atcgagcggagcaggcggaggccgataagaaggcggcagaggacaggagcaagcaggt 120239951
Score = 91.7 bits (46), Expect = 1e-15
Identities = 67/74 (90%)
Strand = Plus / Minus
Query: 479 gatgaggagaagatggagattcaggagatgcagctcaaagaggccaagcacattgccgag 538
||||||||||| ||||| ||||||||||| ||||| ||||| |||||||||||||| |||
Sbjct: 120223826 gatgaggagaaaatggaaattcaggagatccagctgaaagaagccaagcacattgctgag 120223767
Query: 539 gaggccgaccgcaa 552
|| |||||||||||
Sbjct: 120223766 gatgccgaccgcaa 120223753
Score = 79.8 bits (40), Expect = 4e-12
Identities = 88/104 (84%)
Strand = Plus / Minus
Query: 341 cgcatccaactcgttgaggaggagttggacagggctcaggaacgactggccacagccctg 400
||||||||||| |||||||| ||| ||||| | || ||||| |||||||| ||||| |
Sbjct: 120225997 cgcatccaactggttgaggaagagctggaccgtgcccaggagcgactggcaacagcttta 120225938
Query: 401 cagaagcttgaggaggcagaaaaggctgcagatgagagcgagag 444
||||| ||||||||||| || ||||| ||||||||||| |||||
Sbjct: 120225937 cagaaacttgaggaggctgagaaggcagcagatgagagtgagag 120225894
Score = 77.8 bits (39), Expect = 1e-11
Identities = 72/83 (86%)
Strand = Plus / Minus
Query: 356 gaggaggagttggacagggctcaggaacgactggccacagccctgcagaagcttgaggag 415
||||||||| ||||| |||| ||||| || ||||||||||||||||| ||||| ||||||
Sbjct: 264130944 gaggaggagctggaccgggcgcaggagcgtctggccacagccctgcaaaagctggaggag 264130885
Query: 416 gcagaaaaggctgcagatgagag 438
|| || ||||| || ||||||||
Sbjct: 264130884 gccgagaaggcagctgatgagag 264130862
>gb|GL894998.2| Sus scrofa unplaced genomic scaffold ChrUScaf2882
Length = 79217
Score = 83.8 bits (42), Expect = 2e-13
Identities = 48/50 (96%)
Strand = Plus / Minus
Query: 71 atggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaa 120
||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 15261 atggaggccatcaagaaaaagatgcagatgctgaagttggacaaggagaa 15212
Score = 65.9 bits (33), Expect = 6e-08
Identities = 84/101 (83%)
Strand = Plus / Minus
Query: 344 atccaactcgttgaggaggagttggacagggctcaggaacgactggccacagccctgcag 403
||||| || ||||| |||||| ||||| | ||||| || || |||||||| ||||||||
Sbjct: 2061 atccagctggttgaagaggagctggaccgcgctcaagagcgcctggccactgccctgcaa 2002
Query: 404 aagcttgaggaggcagaaaaggctgcagatgagagcgagag 444
||||| ||||| || || || ||||| ||||||||||||||
Sbjct: 2001 aagctggaggaagctgagaaagctgctgatgagagcgagag 1961
Score = 61.9 bits (31), Expect = 9e-07
Identities = 79/95 (83%)
Strand = Plus / Minus
Query: 209 cagaagaagctgaaggggacagaggatgagctggacaaatactccgagaacctgaaggac 268
|||||||| || || |||||||||||||||||||||||||| || || ||||||||
Sbjct: 14331 cagaagaaactaaaagggacagaggatgagctggacaaatattctgaagctctgaaggat 14272
Query: 269 gcgcaggaaaagctggagttgagcgagaagaaagc 303
|| ||||| ||||||||| || |||||||||||
Sbjct: 14271 gcccaggagaagctggagctggcagagaagaaagc 14237
>Sscrofa_Chr04
|| Length = 143465943
Score = 83.8 bits (42), Expect = 2e-13
Identities = 48/50 (96%)
Strand = Plus / Plus
Query: 71 atggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaa 120
||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 104459762 atggaggccatcaagaaaaagatgcagatgctgaagttggacaaggagaa 104459811
Score = 67.9 bits (34), Expect = 1e-08
Identities = 79/94 (84%)
Strand = Plus / Minus
Query: 756 ctgacaaactgaaagaggctgagacccgtgctgaatttgcagagagaacagttgcaaaac 815
|||| ||||| |||||||| ||||||||||||| |||||| |||||| || || || |
Sbjct: 63051653 ctgataaactcaaagaggcagagacccgtgctgcatttgctgagagatgggtagccaagc 63051594
Query: 816 tggaaaagaccatcgatgacctggaagaaaaact 849
|||||||||| || ||||| |||||||||||||
Sbjct: 63051593 tggaaaagacaattgatgatttggaagaaaaact 63051560
Score = 65.9 bits (33), Expect = 6e-08
Identities = 84/101 (83%)
Strand = Plus / Plus
Query: 344 atccaactcgttgaggaggagttggacagggctcaggaacgactggccacagccctgcag 403
||||| || ||||| |||||| ||||| | ||||| || || |||||||| ||||||||
Sbjct: 104473286 atccagctggttgaagaggagctggaccgcgctcaagagcgcctggccactgccctgcaa 104473345
Query: 404 aagcttgaggaggcagaaaaggctgcagatgagagcgagag 444
||||| ||||| || || || ||||| ||||||||||||||
Sbjct: 104473346 aagctggaggaagctgagaaagctgctgatgagagcgagag 104473386
Score = 61.9 bits (31), Expect = 9e-07
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 209 cagaagaagctgaaggggacagaggatgagctggacaaatactccgagaacctgaaggac 268
|||||||| || || |||||||||||||||||||||||||| || || ||||||||
Sbjct: 104460513 cagaagaaactaaaagggacagaggatgagctggacaaatattctgaagctctgaaggat 104460572
Query: 269 gcgcaggaaaagctggagttgagcgagaagaaagc 303
|| ||||| ||||||||| || |||||||||||
Sbjct: 104460573 gcccaggagaagctggagctggcagagaagaaagc 104460607
>Sscrofa_Chr13
|| Length = 218635234
Score = 69.9 bits (35), Expect = 4e-09
Identities = 128/159 (80%)
Strand = Plus / Plus
Query: 386 ctggccacagccctgcagaagcttgaggaggcagaaaaggctgcagatgagagcgagaga 445
|||||||| || ||||| ||||| || || ||||| || ||||| || ||||| ||||||
Sbjct: 43190661 ctggccactgctctgcaaaagctggaagaagcagagaaagctgctgacgagagtgagaga 43190720
Query: 446 ggaatgaaggtgatagaaaaccgggccatgaaagatgaggagaagatggagattcaggag 505
|| |||||||| || |||||| | ||| | ||||||||||| || ||||| | |||||
Sbjct: 43190721 ggtatgaaggttattgaaaactgagccttaaaagatgaggaaaaaatggaagtacaggaa 43190780
Query: 506 atgcagctcaaagaggccaagcacattgccgaggaggcc 544
|| || |||||||| || ||| ||||||| || ||||||
Sbjct: 43190781 atccaactcaaagaagctaagtacattgcagaagaggcc 43190819
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 47,022,413
Number of extensions: 388
Number of successful extensions: 388
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 386
Number of HSP's successfully gapped: 23
Length of query: 1397
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1376
Effective length of database: 2,808,413,156
Effective search space: 3864376502656
Effective search space used: 3864376502656
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)