Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0138_A08
(1499 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005689.2| secretory carrier-associated membrane protein 3... 438 e-123
Alignment gi|NP_443069.1| secretory carrier-associated membrane protein 3... 382 e-106
Alignment gi|NP_004857.4| secretory carrier-associated membrane protein 1... 218 9e-57
Alignment gi|NP_005688.2| secretory carrier-associated membrane protein 2... 214 1e-55
Alignment gi|NP_620417.1| secretory carrier-associated membrane protein 5... 149 9e-36
Alignment gi|NP_001171583.1| secretory carrier-associated membrane protei... 149 9e-36
Alignment gi|NP_001171582.1| secretory carrier-associated membrane protei... 149 9e-36
Alignment gi|NP_524558.1| secretory carrier-associated membrane protein 4... 145 7e-35
>ref|NP_005689.2| secretory carrier-associated membrane protein 3 isoform 1 [Homo
sapiens].
Length = 347
Score = 438 bits (1127), Expect = e-123
Identities = 223/321 (69%), Positives = 226/321 (70%)
Frame = +2
Query: 134 DGGNPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXX 313
DGGNPFAEP ELDNPFQDPAVIQHRPS QYATLDVYNPFETR
Sbjct: 6 DGGNPFAEPSELDNPFQDPAVIQHRPSRQYATLDVYNPFETREPPPAYEPPAPAPLPPPS 65
Query: 314 XXXLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAAL 493
LQ SRKLSPTEPKNYGSY ELNRKAEELDRRERELQHAAL
Sbjct: 66 APSLQPSRKLSPTEPKNYGSYSTQASAAAATAELLKKQEELNRKAEELDRRERELQHAAL 125
Query: 494 GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXX 673
GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCST
Sbjct: 126 GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALLLNFLAC 185
Query: 674 XXSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDV 853
SFCVETN G+GFGLSILW+LLFTPCSFVCWYRPMYKA VQDV
Sbjct: 186 LASFCVETNNGAGFGLSILWVLLFTPCSFVCWYRPMYKAFRSDSSFNFFVFFFIFFVQDV 245
Query: 854 LYVLQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYR 1033
L+VLQAIGIPGWGFSGWIS GIAVLGIVMLKRIHSLYR
Sbjct: 246 LFVLQAIGIPGWGFSGWISALVVPKGNTAVSVLMLLVALLFTGIAVLGIVMLKRIHSLYR 305
Query: 1034 RTGASFQKAQQEFAAGVFSNP 1096
RTGASFQKAQQEFAAGVFSNP
Sbjct: 306 RTGASFQKAQQEFAAGVFSNP 326
>ref|NP_443069.1| secretory carrier-associated membrane protein 3 isoform 2 [Homo
sapiens].
Length = 321
Score = 382 bits (981), Expect = e-106
Identities = 202/321 (62%), Positives = 207/321 (64%)
Frame = +2
Query: 134 DGGNPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXX 313
DGGNPFAEP ELDNPFQ P + P+P
Sbjct: 6 DGGNPFAEPSELDNPFQPPPAYEP-PAPA-------------------------PLPPPS 39
Query: 314 XXXLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAAL 493
LQ SRKLSPTEPKNYGSY ELNRKAEELDRRERELQHAAL
Sbjct: 40 APSLQPSRKLSPTEPKNYGSYSTQASAAAATAELLKKQEELNRKAEELDRRERELQHAAL 99
Query: 494 GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXX 673
GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCST
Sbjct: 100 GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALLLNFLAC 159
Query: 674 XXSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDV 853
SFCVETN G+GFGLSILW+LLFTPCSFVCWYRPMYKA VQDV
Sbjct: 160 LASFCVETNNGAGFGLSILWVLLFTPCSFVCWYRPMYKAFRSDSSFNFFVFFFIFFVQDV 219
Query: 854 LYVLQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYR 1033
L+VLQAIGIPGWGFSGWIS GIAVLGIVMLKRIHSLYR
Sbjct: 220 LFVLQAIGIPGWGFSGWISALVVPKGNTAVSVLMLLVALLFTGIAVLGIVMLKRIHSLYR 279
Query: 1034 RTGASFQKAQQEFAAGVFSNP 1096
RTGASFQKAQQEFAAGVFSNP
Sbjct: 280 RTGASFQKAQQEFAAGVFSNP 300
>ref|NP_004857.4| secretory carrier-associated membrane protein 1 [Homo sapiens].
Length = 338
Score = 218 bits (556), Expect = 9e-57
Identities = 134/319 (42%), Positives = 159/319 (49%), Gaps = 2/319 (0%)
Frame = +2
Query: 143 NPFAEPGELDNPFQDPAVIQ-HRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXXXX 319
NPFA+P +L+NPF+DP+V Q R P LD YNPF
Sbjct: 7 NPFADP-DLNNPFKDPSVTQVTRNVPP--GLDEYNPFSDSRTPPPGGVKMPNVPNTQPAI 63
Query: 320 XLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXE-LNRKAEELDRRERELQHAALG 496
+ PTE + +Y E L RKA ELDRRERE+Q+ +
Sbjct: 64 -------MKPTE--EHPAYTQIAKEHALAQAELLKRQEELERKAAELDRREREMQNLSQH 114
Query: 497 GTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXX 676
G R+NNWPPLPS PV PCF+QD S++IP EFQKTV MYYLWM
Sbjct: 115 G---RKNNWPPLPSNFPVGPCFYQDFSVDIPVEFQKTVKLMYYLWMFHAVTLFLNIFGCL 171
Query: 677 XSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVL 856
FCV++ FGLSILW LLFTPCSFVCWYRP+Y A Q +
Sbjct: 172 AWFCVDSARAVDFGLSILWFLLFTPCSFVCWYRPLYGAFRSDSSFRFFVFFFVYICQFAV 231
Query: 857 YVLQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYRR 1036
+VLQA G WG GWIS AV+ +VM K++H LYR
Sbjct: 232 HVLQAAGFHNWGNCGWISSLTGLNQNIPVGIMMIIIAALFTASAVISLVMFKKVHGLYRT 291
Query: 1037 TGASFQKAQQEFAAGVFSN 1093
TGASF+KAQQEFA GV SN
Sbjct: 292 TGASFEKAQQEFATGVMSN 310
>ref|NP_005688.2| secretory carrier-associated membrane protein 2 [Homo sapiens].
Length = 329
Score = 214 bits (546), Expect = 1e-55
Identities = 125/318 (39%), Positives = 167/318 (52%), Gaps = 1/318 (0%)
Frame = +2
Query: 143 NPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXXXXX 322
NPFA+P ++ NPFQDP+V Q +PQ L +NPF
Sbjct: 7 NPFADPVDV-NPFQDPSVTQLTNAPQ-GGLAEFNPFSETNAATTVPVTQLPGSSQPAV-- 62
Query: 323 LQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAALGGT 502
LQ S + PT+P EL+RKA EL+R+ERELQ+ +
Sbjct: 63 LQPS--VEPTQPTPQA------VVSAAQAGLLRQQEELDRKAAELERKERELQNT-VANL 113
Query: 503 ATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXXXS 682
RQNNWPPLPS+CPV+PCF+QD S EIP ++Q+ +YYLWM +
Sbjct: 114 HVRQNNWPPLPSWCPVKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAW 173
Query: 683 FCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVLYV 862
F ++ G FGLSILW L+FTPC+F+CWYRP+YKA Q +Y+
Sbjct: 174 FSGNSSKGVDFGLSILWFLIFTPCAFLCWYRPIYKAFRSDNSFSFFVFFFVFFCQIGIYI 233
Query: 863 LQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGI-AVLGIVMLKRIHSLYRRT 1039
+Q +GIPG G SGWI+ + AVL + +L+R+HSLYRRT
Sbjct: 234 IQLVGIPGLGDSGWIAALSTLDNHSLAISVIMMVVAGFFTLCAVLSVFLLQRVHSLYRRT 293
Query: 1040 GASFQKAQQEFAAGVFSN 1093
GASFQ+AQ+EF+ G+FS+
Sbjct: 294 GASFQQAQEEFSQGIFSS 311
>ref|NP_620417.1| secretory carrier-associated membrane protein 5 [Homo sapiens].
Length = 235
Score = 149 bits (375), Expect = 9e-36
Identities = 69/198 (34%), Positives = 101/198 (51%)
Frame = +2
Query: 503 ATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXXXS 682
A + NN+PPLP F P++PCF+QD +IP + +YYLWM ++ +
Sbjct: 2 AEKVNNFPPLPKFIPLKPCFYQDFEADIPPQHVSMTKRLYYLWMLNS-VTLAVNLVGCLA 60
Query: 683 FCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVLYV 862
+ + + FGL+ LW++LFTPCS+VCW+RP+YKA Q V+ +
Sbjct: 61 WLIGGGGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFFTFMAQLVISI 120
Query: 863 LQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYRRTG 1042
+QA+GIPGWG GWI+ +AV + L +H YR +G
Sbjct: 121 IQAVGIPGWGVCGWIATISFFGTNIGSAVVMLIPTVMFTVMAVFSFIALSMVHKFYRGSG 180
Query: 1043 ASFQKAQQEFAAGVFSNP 1096
SF KAQ+E+ G + NP
Sbjct: 181 GSFSKAQEEWTTGAWKNP 198
>ref|NP_001171583.1| secretory carrier-associated membrane protein 5 [Homo sapiens].
Length = 235
Score = 149 bits (375), Expect = 9e-36
Identities = 69/198 (34%), Positives = 101/198 (51%)
Frame = +2
Query: 503 ATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXXXS 682
A + NN+PPLP F P++PCF+QD +IP + +YYLWM ++ +
Sbjct: 2 AEKVNNFPPLPKFIPLKPCFYQDFEADIPPQHVSMTKRLYYLWMLNS-VTLAVNLVGCLA 60
Query: 683 FCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVLYV 862
+ + + FGL+ LW++LFTPCS+VCW+RP+YKA Q V+ +
Sbjct: 61 WLIGGGGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFFTFMAQLVISI 120
Query: 863 LQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYRRTG 1042
+QA+GIPGWG GWI+ +AV + L +H YR +G
Sbjct: 121 IQAVGIPGWGVCGWIATISFFGTNIGSAVVMLIPTVMFTVMAVFSFIALSMVHKFYRGSG 180
Query: 1043 ASFQKAQQEFAAGVFSNP 1096
SF KAQ+E+ G + NP
Sbjct: 181 GSFSKAQEEWTTGAWKNP 198
>ref|NP_001171582.1| secretory carrier-associated membrane protein 5 [Homo sapiens].
Length = 235
Score = 149 bits (375), Expect = 9e-36
Identities = 69/198 (34%), Positives = 101/198 (51%)
Frame = +2
Query: 503 ATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXXXS 682
A + NN+PPLP F P++PCF+QD +IP + +YYLWM ++ +
Sbjct: 2 AEKVNNFPPLPKFIPLKPCFYQDFEADIPPQHVSMTKRLYYLWMLNS-VTLAVNLVGCLA 60
Query: 683 FCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVLYV 862
+ + + FGL+ LW++LFTPCS+VCW+RP+YKA Q V+ +
Sbjct: 61 WLIGGGGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFFTFMAQLVISI 120
Query: 863 LQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYRRTG 1042
+QA+GIPGWG GWI+ +AV + L +H YR +G
Sbjct: 121 IQAVGIPGWGVCGWIATISFFGTNIGSAVVMLIPTVMFTVMAVFSFIALSMVHKFYRGSG 180
Query: 1043 ASFQKAQQEFAAGVFSNP 1096
SF KAQ+E+ G + NP
Sbjct: 181 GSFSKAQEEWTTGAWKNP 198
>ref|NP_524558.1| secretory carrier-associated membrane protein 4 [Homo sapiens].
Length = 229
Score = 145 bits (367), Expect = 7e-35
Identities = 74/198 (37%), Positives = 103/198 (52%), Gaps = 2/198 (1%)
Frame = +2
Query: 509 RQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWM--CSTXXXXXXXXXXXXS 682
++NN+PPLP F PV+PCF+Q+ S EIP E Q V +Y LWM C+T +
Sbjct: 4 KENNFPPLPKFIPVKPCFYQNFSDEIPVEHQVLVKRIYRLWMFYCAT---LGVNLIACLA 60
Query: 683 FCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVLYV 862
+ + +G+ FGL+ +W+LLFTPC +VCW+RP+YKA Q VL V
Sbjct: 61 WWIGGGSGTNFGLAFVWLLLFTPCGYVCWFRPVYKAFRADSSFNFMAFFFIFGAQFVLTV 120
Query: 863 LQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYRRTG 1042
+QAIG GWG GW+S A + + + ++H +YR G
Sbjct: 121 IQAIGFSGWGACGWLSAIGFFQYSPGAAVVMLLPAIMFSVSAAMMAIAIMKVHRIYRGAG 180
Query: 1043 ASFQKAQQEFAAGVFSNP 1096
SFQKAQ E+ G + NP
Sbjct: 181 GSFQKAQTEWNTGTWRNP 198
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 55,010,903
Number of extensions: 1479082
Number of successful extensions: 5689
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 5640
Number of HSP's successfully gapped: 9
Length of query: 499
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 392
Effective length of database: 14,770,016
Effective search space: 5789846272
Effective search space used: 5789846272
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0138_A08
(1499 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030503.1| secretory carrier-associated membrane protei... 437 e-122
Alignment gi|NP_001069522.1| secretory carrier-associated membrane protei... 218 9e-57
Alignment gi|NP_001095640.1| secretory carrier-associated membrane protei... 217 2e-56
Alignment gi|NP_001019737.1| secretory carrier-associated membrane protei... 148 1e-35
Alignment gi|NP_001160037.1| secretory carrier-associated membrane protei... 147 2e-35
>ref|NP_001030503.1| secretory carrier-associated membrane protein 3 [Bos taurus].
Length = 347
Score = 437 bits (1123), Expect = e-122
Identities = 223/321 (69%), Positives = 226/321 (70%)
Frame = +2
Query: 134 DGGNPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXX 313
DGGNPFAEPGELDNPFQDPAVIQHRPS YATLDVYNPFETR
Sbjct: 6 DGGNPFAEPGELDNPFQDPAVIQHRPSTHYATLDVYNPFETREPPPSYEPPAPVPIAPPS 65
Query: 314 XXXLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAAL 493
LQSSRKLSPTEPKNYGSY ELNRKAEELDRREREL+HAAL
Sbjct: 66 APPLQSSRKLSPTEPKNYGSYSTQASTAAATAELLKKQEELNRKAEELDRRERELRHAAL 125
Query: 494 GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXX 673
G TATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCST
Sbjct: 126 GSTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALLLNFLAC 185
Query: 674 XXSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDV 853
SFCVET+ GSGFGLSILWILLFTPCSFVCWYRPMYKA VQDV
Sbjct: 186 LASFCVETSNGSGFGLSILWILLFTPCSFVCWYRPMYKAFRSDSSFNFFVFFFIFFVQDV 245
Query: 854 LYVLQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYR 1033
L+VLQAIGIPGWGFSGWIS GIAVLGIVMLKRIHSLYR
Sbjct: 246 LFVLQAIGIPGWGFSGWISALVVLKVNTAVAVLMLLVALFFTGIAVLGIVMLKRIHSLYR 305
Query: 1034 RTGASFQKAQQEFAAGVFSNP 1096
RTGASFQKAQQEFAAGVFSNP
Sbjct: 306 RTGASFQKAQQEFAAGVFSNP 326
>ref|NP_001069522.1| secretory carrier-associated membrane protein 1 [Bos taurus].
Length = 354
Score = 218 bits (556), Expect = 9e-57
Identities = 134/319 (42%), Positives = 158/319 (49%), Gaps = 2/319 (0%)
Frame = +2
Query: 143 NPFAEPGELDNPFQDPAVIQ-HRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXXXX 319
NPFA+P +L+NPF+DP+V Q R P LD YNPF
Sbjct: 7 NPFADP-DLNNPFKDPSVTQVTRNVPP--GLDEYNPFSDSRTPPPGNVKMPNVPSTQPAI 63
Query: 320 XLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXE-LNRKAEELDRRERELQHAALG 496
+ PTE + +Y E L RKA ELDRRERE+Q+ +
Sbjct: 64 -------MKPTE--EHPAYTQIAKEHALAQAELLKRQEELERKAAELDRREREMQNLSQH 114
Query: 497 GTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXX 676
G R+NNWPPLP PV PCF+QD S++IP EFQKTV MYYLWM
Sbjct: 115 G---RKNNWPPLPDNFPVGPCFYQDFSVDIPVEFQKTVKIMYYLWMFHAVTLFLNIFGCL 171
Query: 677 XSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVL 856
FCV+ G FGLSILW LLFTPCSFVCWYRP+Y A Q +
Sbjct: 172 AWFCVDPPRGVDFGLSILWFLLFTPCSFVCWYRPLYGAFRSDSSFRFFVFFFVYICQFAV 231
Query: 857 YVLQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYRR 1036
+VLQA G WG GWIS AV+ +VM K++H LYR
Sbjct: 232 HVLQAAGFHNWGNCGWISSLTGLNKSIPVGIMMIIIAALFTASAVISLVMFKKVHGLYRT 291
Query: 1037 TGASFQKAQQEFAAGVFSN 1093
TGASF+KAQQEFA GV SN
Sbjct: 292 TGASFEKAQQEFATGVMSN 310
>ref|NP_001095640.1| secretory carrier-associated membrane protein 2 [Bos taurus].
Length = 328
Score = 217 bits (552), Expect = 2e-56
Identities = 125/317 (39%), Positives = 166/317 (52%)
Frame = +2
Query: 143 NPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXXXXX 322
NPFA+P ++ NPFQDP+V Q +PQ L +NPF
Sbjct: 7 NPFADPVDV-NPFQDPSVTQLTNAPQ-GGLAEFNPFSETNAATTVPVSQMPGASQPAV-- 62
Query: 323 LQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAALGGT 502
LQ S + PT+P EL+RKA EL+R+ERELQ+ +
Sbjct: 63 LQPS--VEPTQPTPQA------VASAAQASLLRQQEELDRKAAELERKERELQNT-VANL 113
Query: 503 ATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXXXS 682
R+NNWPPLP +CPV+PCF+QD S EIP ++Q+ +YYLWM +
Sbjct: 114 HVRENNWPPLPVWCPVKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAW 173
Query: 683 FCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVLYV 862
F V+T+ G FGLSILW ++FTPC+F+CWYRP+YKA Q +Y+
Sbjct: 174 FLVDTSRGVDFGLSILWFVIFTPCAFLCWYRPIYKAFRSDNSFSFFVFFFVFFCQIGIYI 233
Query: 863 LQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYRRTG 1042
+Q IGIP G SGWI+ AVL + +LKR+HSLYRRTG
Sbjct: 234 IQLIGIPSLGDSGWIAALSTMKHNLAVSVIMMVVAGFFTLCAVLSLFLLKRVHSLYRRTG 293
Query: 1043 ASFQKAQQEFAAGVFSN 1093
ASFQ+AQ+EF+ G+FS+
Sbjct: 294 ASFQQAQEEFSQGIFSS 310
>ref|NP_001019737.1| secretory carrier-associated membrane protein 4 [Bos taurus].
Length = 230
Score = 148 bits (374), Expect = 1e-35
Identities = 72/198 (36%), Positives = 107/198 (54%), Gaps = 2/198 (1%)
Frame = +2
Query: 509 RQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWM--CSTXXXXXXXXXXXXS 682
++NN+PPLP F P++PCF+Q+ S EIP E Q V +Y LW+ C+T +
Sbjct: 4 KENNFPPLPKFIPLKPCFYQNFSDEIPIEHQVLVKRIYRLWLFYCAT---LGVNLVACLA 60
Query: 683 FCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVLYV 862
+ + +G+ FGL++LW+LLF+PC +VCW+RP YKA Q +L +
Sbjct: 61 WWIAGGSGANFGLALLWLLLFSPCGYVCWFRPAYKAFRSDSSFNFMAFFFIFGAQFILTI 120
Query: 863 LQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYRRTG 1042
+QA+G GWG GW++ A + VM+ ++HS+YR TG
Sbjct: 121 IQAVGFSGWGACGWLAAIGFFQTSVGAAVVMLLPAIMFSMSAAMMAVMIMKVHSIYRGTG 180
Query: 1043 ASFQKAQQEFAAGVFSNP 1096
SFQKAQ E++ G + NP
Sbjct: 181 GSFQKAQTEWSTGTWRNP 198
>ref|NP_001160037.1| secretory carrier-associated membrane protein 5 [Bos taurus].
Length = 235
Score = 147 bits (372), Expect = 2e-35
Identities = 68/194 (35%), Positives = 99/194 (51%)
Frame = +2
Query: 515 NNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXXXSFCVE 694
NN+PPLP F P++PCF+QD +IP + +YYLWM ++ ++ +
Sbjct: 6 NNFPPLPKFIPLKPCFYQDFEADIPPQHLSMTKRLYYLWMLNS-VTLAVNLVGCLAWLIG 64
Query: 695 TNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVLYVLQAI 874
+ FGL+ LW++LFTPCS+VCW+RP+YKA Q V+ ++QA+
Sbjct: 65 GGGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFFTFMAQLVISIIQAV 124
Query: 875 GIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYRRTGASFQ 1054
GIPGWG GWI+ +AV + L +H YR +G SF
Sbjct: 125 GIPGWGVCGWIATISFFGTNIGSAVVMLIPTVLFTVMAVFSFIALSMVHKFYRGSGGSFS 184
Query: 1055 KAQQEFAAGVFSNP 1096
KAQ+E+ G + NP
Sbjct: 185 KAQEEWTTGAWKNP 198
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 53,998,652
Number of extensions: 1481922
Number of successful extensions: 5966
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5928
Number of HSP's successfully gapped: 5
Length of query: 499
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 393
Effective length of database: 14,174,046
Effective search space: 5570400078
Effective search space used: 5570400078
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0138_A08
(1499 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850806.1| PREDICTED: similar to secretory carrier membran... 419 e-135
Alignment gi|XP_851948.1| PREDICTED: similar to secretory carrier membran... 435 e-122
Alignment gi|XP_864765.1| PREDICTED: similar to secretory carrier membran... 429 e-120
Alignment gi|XP_864743.1| PREDICTED: similar to secretory carrier membran... 427 e-119
Alignment gi|XP_864783.1| PREDICTED: similar to secretory carrier membran... 393 e-109
Alignment gi|XP_864802.1| PREDICTED: similar to secretory carrier membran... 375 e-104
Alignment gi|XP_864724.1| PREDICTED: similar to secretory carrier membran... 249 4e-66
Alignment gi|XP_859726.1| PREDICTED: similar to Secretory carrier-associa... 226 3e-59
Alignment gi|XP_544777.2| PREDICTED: similar to Secretory carrier-associa... 222 6e-58
Alignment gi|XP_536314.2| PREDICTED: similar to Secretory carrier-associa... 219 5e-57
>ref|XP_850806.1| PREDICTED: similar to secretory carrier membrane protein 3 isoform 1
[Canis familiaris].
Length = 374
Score = 419 bits (1077), Expect(2) = e-135
Identities = 214/321 (66%), Positives = 219/321 (68%)
Frame = +2
Query: 134 DGGNPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXX 313
DG NPF PG+LDNPFQDPAVIQH+PSPQYATLDVYNPFETR
Sbjct: 6 DGENPFIRPGKLDNPFQDPAVIQHQPSPQYATLDVYNPFETRELPLAYEPPAPAPLPSPS 65
Query: 314 XXXLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAAL 493
LQSSRKLSPTEPKNYGSY ELNRKAEELD RERELQHAAL
Sbjct: 66 APSLQSSRKLSPTEPKNYGSYSTQASAAAATAELLKKPEELNRKAEELDWRERELQHAAL 125
Query: 494 GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXX 673
GGTA RQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCST
Sbjct: 126 GGTAARQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALLLNFLAC 185
Query: 674 XXSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDV 853
SFCVET+ GSGFGLSILW+LLFTPCSFVCWYRPMYKA VQDV
Sbjct: 186 LASFCVETSNGSGFGLSILWVLLFTPCSFVCWYRPMYKAFRSNSSFNFFVFFFIFFVQDV 245
Query: 854 LYVLQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYR 1033
L+VLQAIGIPGWGFSGWIS GIAVLGIVMLKRIHSLYR
Sbjct: 246 LFVLQAIGIPGWGFSGWISALVVLKTNTAVAVLMLLVALLFTGIAVLGIVMLKRIHSLYR 305
Query: 1034 RTGASFQKAQQEFAAGVFSNP 1096
RT SFQKAQQEFAAGV P
Sbjct: 306 RTSVSFQKAQQEFAAGVSPQP 326
Score = 82.4 bits (202), Expect(2) = e-135
Identities = 37/48 (77%), Positives = 39/48 (81%)
Frame = +1
Query: 1090 QPCGANCSCQCSRWSCRKCLPGPVTPDWDALALPLEGADLAPIPEVSG 1233
QP GANC CQ SRW CRKCLP P++P DALALPLEGA LAPIPE SG
Sbjct: 325 QPRGANCCCQRSRWRCRKCLPSPISPGRDALALPLEGAQLAPIPEGSG 372
>ref|XP_851948.1| PREDICTED: similar to secretory carrier membrane protein 3 isoform 1
isoform 1 [Canis familiaris].
Length = 347
Score = 435 bits (1119), Expect = e-122
Identities = 222/321 (69%), Positives = 225/321 (70%)
Frame = +2
Query: 134 DGGNPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXX 313
DG NPFA P ELDNPFQDPAVIQHRPSPQYATLDVYNPFETR
Sbjct: 6 DGENPFAGPSELDNPFQDPAVIQHRPSPQYATLDVYNPFETREPPLAYEPPAPAPLPSPS 65
Query: 314 XXXLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAAL 493
LQSSRKLSPTEPKNYGSY ELNRKAEELDRRERELQHAAL
Sbjct: 66 APSLQSSRKLSPTEPKNYGSYSTQASAAAATAELLKKQEELNRKAEELDRRERELQHAAL 125
Query: 494 GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXX 673
GGTA RQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCST
Sbjct: 126 GGTAARQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALLLNFLAC 185
Query: 674 XXSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDV 853
SFCVET+ GSGFGLSILW+LLFTPCSFVCWYRPMYKA VQDV
Sbjct: 186 LASFCVETSNGSGFGLSILWVLLFTPCSFVCWYRPMYKAFRSDSSFNFFVFFFIFFVQDV 245
Query: 854 LYVLQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYR 1033
L+VLQAIGIPGWGFSGWIS GIAVLGIVMLKRIHSLYR
Sbjct: 246 LFVLQAIGIPGWGFSGWISALVVLKTNTAVAVLMLLVALLFTGIAVLGIVMLKRIHSLYR 305
Query: 1034 RTGASFQKAQQEFAAGVFSNP 1096
RTGASFQKAQQEFAAGVFSNP
Sbjct: 306 RTGASFQKAQQEFAAGVFSNP 326
>ref|XP_864765.1| PREDICTED: similar to secretory carrier membrane protein 3 isoform 1
isoform 4 [Canis familiaris].
Length = 347
Score = 429 bits (1103), Expect = e-120
Identities = 220/321 (68%), Positives = 223/321 (69%)
Frame = +2
Query: 134 DGGNPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXX 313
DG NPFA P ELDNPFQDPAVIQHRPSPQYATLDVYNPFETR
Sbjct: 6 DGENPFAGPSELDNPFQDPAVIQHRPSPQYATLDVYNPFETREPPLAYEPPAPAPLPSPS 65
Query: 314 XXXLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAAL 493
LQSSRKLSPTEPKNYGSY ELNRKAEELDRRERELQHAAL
Sbjct: 66 APSLQSSRKLSPTEPKNYGSYSTQASAAAATAELLKKQEELNRKAEELDRRERELQHAAL 125
Query: 494 GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXX 673
GGTA RQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWM T
Sbjct: 126 GGTAARQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMFCTLALLLNFLAC 185
Query: 674 XXSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDV 853
SFCVET+ GSGFGLSILW+LLFTPCSFVCWYRPMYKA VQDV
Sbjct: 186 LASFCVETSNGSGFGLSILWVLLFTPCSFVCWYRPMYKAFRSDSSFNFFVFFFIFFVQDV 245
Query: 854 LYVLQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYR 1033
L+VLQAIGIPGWGFSGWIS GIAVLGIVMLKRIHSLYR
Sbjct: 246 LFVLQAIGIPGWGFSGWISALVVLKTNTAVAVLMLLVALLFTGIAVLGIVMLKRIHSLYR 305
Query: 1034 RTGASFQKAQQEFAAGVFSNP 1096
RTGASFQKAQQEFAAGVFSNP
Sbjct: 306 RTGASFQKAQQEFAAGVFSNP 326
>ref|XP_864743.1| PREDICTED: similar to secretory carrier membrane protein 3 isoform 1
isoform 3 [Canis familiaris].
Length = 357
Score = 427 bits (1098), Expect = e-119
Identities = 222/331 (67%), Positives = 225/331 (67%), Gaps = 10/331 (3%)
Frame = +2
Query: 134 DGGNPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXX 313
DG NPFA P ELDNPFQDPAVIQHRPSPQYATLDVYNPFETR
Sbjct: 6 DGENPFAGPSELDNPFQDPAVIQHRPSPQYATLDVYNPFETREPPLAYEPPAPAPLPSPS 65
Query: 314 XXXLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAAL 493
LQSSRKLSPTEPKNYGSY ELNRKAEELDRRERELQHAAL
Sbjct: 66 APSLQSSRKLSPTEPKNYGSYSTQASAAAATAELLKKQEELNRKAEELDRRERELQHAAL 125
Query: 494 GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMC----------ST 643
GGTA RQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMC ST
Sbjct: 126 GGTAARQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCEYVLYLCPLGST 185
Query: 644 XXXXXXXXXXXXSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXX 823
SFCVET+ GSGFGLSILW+LLFTPCSFVCWYRPMYKA
Sbjct: 186 LALLLNFLACLASFCVETSNGSGFGLSILWVLLFTPCSFVCWYRPMYKAFRSDSSFNFFV 245
Query: 824 XXXXXXVQDVLYVLQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIV 1003
VQDVL+VLQAIGIPGWGFSGWIS GIAVLGIV
Sbjct: 246 FFFIFFVQDVLFVLQAIGIPGWGFSGWISALVVLKTNTAVAVLMLLVALLFTGIAVLGIV 305
Query: 1004 MLKRIHSLYRRTGASFQKAQQEFAAGVFSNP 1096
MLKRIHSLYRRTGASFQKAQQEFAAGVFSNP
Sbjct: 306 MLKRIHSLYRRTGASFQKAQQEFAAGVFSNP 336
>ref|XP_864783.1| PREDICTED: similar to secretory carrier membrane protein 3 isoform 1
isoform 5 [Canis familiaris].
Length = 333
Score = 393 bits (1010), Expect = e-109
Identities = 209/321 (65%), Positives = 212/321 (66%)
Frame = +2
Query: 134 DGGNPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXX 313
DG NPFA P ELDNPFQDPAVIQHRPSPQYATLDVYNPFETR
Sbjct: 6 DGENPFAGPSELDNPFQDPAVIQHRPSPQYATLDVYNPFETREPPLAYEPPAPAPLPSPS 65
Query: 314 XXXLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAAL 493
LQSSRKLSPTEPKNYGSY ELNRKAEELDRRERELQHAAL
Sbjct: 66 APSLQSSRKLSPTEPKNYGSYSTQASAAAATAELLKKQEELNRKAEELDRRERELQHAAL 125
Query: 494 GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXX 673
GGTA VQPCFFQDISMEIPQEFQKTVSTMYYLWMCST
Sbjct: 126 GGTA--------------VQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALLLNFLAC 171
Query: 674 XXSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDV 853
SFCVET+ GSGFGLSILW+LLFTPCSFVCWYRPMYKA VQDV
Sbjct: 172 LASFCVETSNGSGFGLSILWVLLFTPCSFVCWYRPMYKAFRSDSSFNFFVFFFIFFVQDV 231
Query: 854 LYVLQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYR 1033
L+VLQAIGIPGWGFSGWIS GIAVLGIVMLKRIHSLYR
Sbjct: 232 LFVLQAIGIPGWGFSGWISALVVLKTNTAVAVLMLLVALLFTGIAVLGIVMLKRIHSLYR 291
Query: 1034 RTGASFQKAQQEFAAGVFSNP 1096
RTGASFQKAQQEFAAGVFSNP
Sbjct: 292 RTGASFQKAQQEFAAGVFSNP 312
>ref|XP_864802.1| PREDICTED: similar to secretory carrier membrane protein 3 isoform 2
isoform 6 [Canis familiaris].
Length = 321
Score = 375 bits (964), Expect = e-104
Identities = 200/321 (62%), Positives = 205/321 (63%)
Frame = +2
Query: 134 DGGNPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXX 313
DG NPFA P ELDNPFQ P + P+P
Sbjct: 6 DGENPFAGPSELDNPFQPPLAYEP-PAPA-------------------------PLPSPS 39
Query: 314 XXXLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAAL 493
LQSSRKLSPTEPKNYGSY ELNRKAEELDRRERELQHAAL
Sbjct: 40 APSLQSSRKLSPTEPKNYGSYSTQASAAAATAELLKKQEELNRKAEELDRRERELQHAAL 99
Query: 494 GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXX 673
GGTA RQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCST
Sbjct: 100 GGTAARQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALLLNFLAC 159
Query: 674 XXSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDV 853
SFCVET+ GSGFGLSILW+LLFTPCSFVCWYRPMYKA VQDV
Sbjct: 160 LASFCVETSNGSGFGLSILWVLLFTPCSFVCWYRPMYKAFRSDSSFNFFVFFFIFFVQDV 219
Query: 854 LYVLQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYR 1033
L+VLQAIGIPGWGFSGWIS GIAVLGIVMLKRIHSLYR
Sbjct: 220 LFVLQAIGIPGWGFSGWISALVVLKTNTAVAVLMLLVALLFTGIAVLGIVMLKRIHSLYR 279
Query: 1034 RTGASFQKAQQEFAAGVFSNP 1096
RTGASFQKAQQEFAAGVFSNP
Sbjct: 280 RTGASFQKAQQEFAAGVFSNP 300
>ref|XP_864724.1| PREDICTED: similar to secretory carrier membrane protein 3 isoform
1 isoform 2 [Canis familiaris].
Length = 181
Score = 249 bits (637), Expect = 4e-66
Identities = 124/167 (74%), Positives = 124/167 (74%)
Frame = +2
Query: 134 DGGNPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXX 313
DG NPFA P ELDNPFQDPAVIQHRPSPQYATLDVYNPFETR
Sbjct: 6 DGENPFAGPSELDNPFQDPAVIQHRPSPQYATLDVYNPFETREPPLAYEPPAPAPLPSPS 65
Query: 314 XXXLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAAL 493
LQSSRKLSPTEPKNYGSY ELNRKAEELDRRERELQHAAL
Sbjct: 66 APSLQSSRKLSPTEPKNYGSYSTQASAAAATAELLKKQEELNRKAEELDRRERELQHAAL 125
Query: 494 GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWM 634
GGTA RQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWM
Sbjct: 126 GGTAARQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWM 172
>ref|XP_859726.1| PREDICTED: similar to Secretory carrier-associated membrane protein 1
(Secretory carrier membrane protein 1) isoform 2 [Canis
familiaris].
Length = 341
Score = 226 bits (577), Expect = 3e-59
Identities = 135/319 (42%), Positives = 160/319 (50%), Gaps = 2/319 (0%)
Frame = +2
Query: 143 NPFAEPGELDNPFQDPAVIQ-HRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXXXX 319
NPFA+P +L+NPF+DP+V Q R P LD YNPF
Sbjct: 7 NPFADP-DLNNPFKDPSVTQVTRNVPP--GLDEYNPFSDSRTPPPGTVKMPNVPSTQPAI 63
Query: 320 XLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXE-LNRKAEELDRRERELQHAALG 496
+ PTE + +Y E L RKA ELDRRERE+Q+ +
Sbjct: 64 -------MKPTE--EHPAYTQIAKEHALAQAELLKRQEELERKAAELDRREREMQNLSQH 114
Query: 497 GTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXX 676
GT +R+NNWPPLP PV PCF+QD S++IP EFQKTV MYYLWM
Sbjct: 115 GTLSRKNNWPPLPGNFPVGPCFYQDFSVDIPVEFQKTVKIMYYLWMFHAVTLFLNIFGCL 174
Query: 677 XSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVL 856
FCV+ G FGLSILW LLFTPCSFVCWYRP+Y A Q +
Sbjct: 175 AWFCVDPTRGVDFGLSILWFLLFTPCSFVCWYRPLYGAFRSDSSFRFFVFFFVYICQFAV 234
Query: 857 YVLQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYRR 1036
+VLQA G WG GWIS AV+ +VM K++H LYR
Sbjct: 235 HVLQAAGFHNWGNCGWISSLTGLNQSIPVGIMMIIIAALFTASAVISLVMFKKVHGLYRT 294
Query: 1037 TGASFQKAQQEFAAGVFSN 1093
TGASF+KAQQEFA GV SN
Sbjct: 295 TGASFEKAQQEFATGVMSN 313
>ref|XP_544777.2| PREDICTED: similar to Secretory carrier-associated membrane protein 2
isoform 1 [Canis familiaris].
Length = 329
Score = 222 bits (566), Expect = 6e-58
Identities = 126/318 (39%), Positives = 172/318 (54%), Gaps = 1/318 (0%)
Frame = +2
Query: 143 NPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXXXXX 322
NPFA+P ++ NPFQDP+V Q +PQ +L +NPF
Sbjct: 7 NPFADPVDV-NPFQDPSVTQLTNAPQ-GSLAEFNPFSETNAATTVPVTQLPGPSQPAV-- 62
Query: 323 LQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAALGGT 502
LQ S + PT+P EL+RKA EL+R+ERELQ + +
Sbjct: 63 LQPS--VEPTQPTPQA------VASAAQASLLRQQEELDRKAAELERKERELQ-STVASL 113
Query: 503 ATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXXXS 682
R+NNWPPLP +CPV+PCF+QD S+EIP ++Q+ +YYLWM +
Sbjct: 114 HVRENNWPPLPFWCPVKPCFYQDFSVEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAW 173
Query: 683 FCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVLYV 862
F V+++ G FGLSILW+++FTPC+F+CWYRP+YKA Q V+Y+
Sbjct: 174 FLVDSSKGVDFGLSILWLIMFTPCAFLCWYRPIYKAFRSDNSFSFFVFFFIFFCQIVIYI 233
Query: 863 LQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGI-AVLGIVMLKRIHSLYRRT 1039
+Q +GIPG G SGWI+ + AVL + +LKR+HSLYRRT
Sbjct: 234 IQLVGIPGLGDSGWIAALSTLKQDHLAVSIIMMVVAGFFTLCAVLSLFLLKRVHSLYRRT 293
Query: 1040 GASFQKAQQEFAAGVFSN 1093
GASFQ+AQ+EF+ G+FSN
Sbjct: 294 GASFQQAQEEFSQGIFSN 311
>ref|XP_536314.2| PREDICTED: similar to Secretory carrier-associated membrane protein 1
(Secretory carrier membrane protein 1) isoform 1 [Canis
familiaris].
Length = 338
Score = 219 bits (558), Expect = 5e-57
Identities = 134/319 (42%), Positives = 158/319 (49%), Gaps = 2/319 (0%)
Frame = +2
Query: 143 NPFAEPGELDNPFQDPAVIQ-HRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXXXX 319
NPFA+P +L+NPF+DP+V Q R P LD YNPF
Sbjct: 7 NPFADP-DLNNPFKDPSVTQVTRNVPP--GLDEYNPFSDSRTPPPGTVKMPNVPSTQPAI 63
Query: 320 XLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXE-LNRKAEELDRRERELQHAALG 496
+ PTE + +Y E L RKA ELDRRERE+Q+ +
Sbjct: 64 -------MKPTE--EHPAYTQIAKEHALAQAELLKRQEELERKAAELDRREREMQNLSQH 114
Query: 497 GTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXX 676
G R+NNWPPLP PV PCF+QD S++IP EFQKTV MYYLWM
Sbjct: 115 G---RKNNWPPLPGNFPVGPCFYQDFSVDIPVEFQKTVKIMYYLWMFHAVTLFLNIFGCL 171
Query: 677 XSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVL 856
FCV+ G FGLSILW LLFTPCSFVCWYRP+Y A Q +
Sbjct: 172 AWFCVDPTRGVDFGLSILWFLLFTPCSFVCWYRPLYGAFRSDSSFRFFVFFFVYICQFAV 231
Query: 857 YVLQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYRR 1036
+VLQA G WG GWIS AV+ +VM K++H LYR
Sbjct: 232 HVLQAAGFHNWGNCGWISSLTGLNQSIPVGIMMIIIAALFTASAVISLVMFKKVHGLYRT 291
Query: 1037 TGASFQKAQQEFAAGVFSN 1093
TGASF+KAQQEFA GV SN
Sbjct: 292 TGASFEKAQQEFATGVMSN 310
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 56,015,765
Number of extensions: 1503759
Number of successful extensions: 6257
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 6188
Number of HSP's successfully gapped: 18
Length of query: 499
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 392
Effective length of database: 15,307,552
Effective search space: 6000560384
Effective search space used: 6000560384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0138_A08
(1499 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_036016.2| secretory carrier-associated membrane protein 3... 408 e-114
Alignment gi|NP_083429.1| secretory carrier-associated membrane protein 1... 219 3e-57
Alignment gi|NP_073724.1| secretory carrier-associated membrane protein 2... 203 3e-52
Alignment gi|NP_064666.1| secretory carrier-associated membrane protein 5... 149 4e-36
Alignment gi|NP_062521.1| secretory carrier-associated membrane protein 4... 147 2e-35
>ref|NP_036016.2| secretory carrier-associated membrane protein 3 [Mus musculus].
Length = 349
Score = 408 bits (1048), Expect = e-114
Identities = 207/323 (64%), Positives = 219/323 (67%), Gaps = 2/323 (0%)
Frame = +2
Query: 134 DGGNPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXX 313
D GNPF + GELDNPFQDPAVIQHRPS QYATLDVYNPFE R
Sbjct: 6 DTGNPFPDSGELDNPFQDPAVIQHRPSQQYATLDVYNPFENREPPPAYEPPAPAPAPLPP 65
Query: 314 XXX--LQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHA 487
+QSSRKLSPTEP+NYGSY ELNRKAEELDRRERELQH
Sbjct: 66 PSAPSVQSSRKLSPTEPRNYGSYSTQASAAAATAELLKKQEELNRKAEELDRRERELQHV 125
Query: 488 ALGGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXX 667
ALGG TRQNNWPPLPSFCPV+PCFFQDISMEIPQEFQKTVSTMYYLWMCST
Sbjct: 126 ALGGAGTRQNNWPPLPSFCPVKPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALLLNFF 185
Query: 668 XXXXSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQ 847
FCV+T +GSGFGLS+LW+LLFTPCSFVCWYRPMYKA VQ
Sbjct: 186 ACLARFCVDTGSGSGFGLSMLWLLLFTPCSFVCWYRPMYKAFRSDSSFNFFVFFFIFFVQ 245
Query: 848 DVLYVLQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSL 1027
DV +VLQAIGIPGWGFSGW++ GIAVLGIVMLKRIHSL
Sbjct: 246 DVFFVLQAIGIPGWGFSGWVTALVVVGSKPAVAVLMLLVALLFTGIAVLGIVMLKRIHSL 305
Query: 1028 YRRTGASFQKAQQEFAAGVFSNP 1096
YR+TGASFQKAQQEFAAGVFSNP
Sbjct: 306 YRQTGASFQKAQQEFAAGVFSNP 328
>ref|NP_083429.1| secretory carrier-associated membrane protein 1 [Mus musculus].
Length = 338
Score = 219 bits (559), Expect = 3e-57
Identities = 134/319 (42%), Positives = 160/319 (50%), Gaps = 2/319 (0%)
Frame = +2
Query: 143 NPFAEPGELDNPFQDPAVIQ-HRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXXXX 319
NPFA+P +L+NPF+DP+V Q R P LD YNPF
Sbjct: 7 NPFADP-DLNNPFKDPSVTQVTRNVPP--GLDEYNPFSDSRTPPPGSVKMPNVPNTQPAI 63
Query: 320 XLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXE-LNRKAEELDRRERELQHAALG 496
+ PTE + +Y E L RKA ELDRRERE+Q+ +
Sbjct: 64 -------MKPTE--EHPAYTQITKEHALAQAELLKRQEELERKAAELDRREREMQNLSQH 114
Query: 497 GTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXX 676
G R+NNWPPLPS PV PCF+QD S++IP EFQKTV MYYLWM
Sbjct: 115 G---RKNNWPPLPSNFPVGPCFYQDFSVDIPVEFQKTVKLMYYLWMFHAVTLFLNIFGCL 171
Query: 677 XSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVL 856
FCV+++ FGLSILW LLFTPCSFVCWYRP+Y A Q +
Sbjct: 172 AWFCVDSSRAVDFGLSILWFLLFTPCSFVCWYRPLYGAFRSDSSFRFFVFFFVYICQFAV 231
Query: 857 YVLQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYRR 1036
+VLQA G WG GWIS AV+ +VM K++H LYR
Sbjct: 232 HVLQAAGFHNWGNCGWISSLTGLNKNIPVGIMMIIIAALFTASAVISLVMFKKVHGLYRT 291
Query: 1037 TGASFQKAQQEFAAGVFSN 1093
TGASF+KAQQEFA GV SN
Sbjct: 292 TGASFEKAQQEFATGVMSN 310
>ref|NP_073724.1| secretory carrier-associated membrane protein 2 [Mus musculus].
Length = 329
Score = 203 bits (517), Expect = 3e-52
Identities = 118/318 (37%), Positives = 163/318 (51%), Gaps = 1/318 (0%)
Frame = +2
Query: 143 NPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXXXXX 322
NPFA+P ++ NPFQDP+V Q +PQ + L +NPF
Sbjct: 7 NPFADPVDV-NPFQDPSVTQLTNAPQ-SGLAEFNPFSETNAATTVPATQAPGPSQPAV-- 62
Query: 323 LQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAALGGT 502
LQ S + + P+ + EL+RKA EL+R+ERELQ+ A
Sbjct: 63 LQPSVEPAQPTPQAVAA--------AAQAGLLRQQEELDRKAAELERKERELQNTA-ANL 113
Query: 503 ATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXXXS 682
R NNWPPLPS+CPV+PCF+QD S EIP ++Q+ +YYLWM +
Sbjct: 114 HVRDNNWPPLPSWCPVKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAW 173
Query: 683 FCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVLYV 862
F + G+ FGLSILW L+FTPC+F+CWYRP+YKA Q +Y
Sbjct: 174 FTSDAANGTAFGLSILWFLIFTPCAFLCWYRPIYKAFRSDNSFSFFVFFFVFFCQIGIYF 233
Query: 863 LQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGI-AVLGIVMLKRIHSLYRRT 1039
+Q IG+P G SGW++ + A L + +L+R+H+ YRRT
Sbjct: 234 IQLIGLPNLGTSGWLAALSTMKNGPLAVTIIMMVVAGFFTLCAGLSLFLLQRVHAFYRRT 293
Query: 1040 GASFQKAQQEFAAGVFSN 1093
GASFQ+AQ+EF+ G+FS+
Sbjct: 294 GASFQQAQEEFSQGIFSS 311
>ref|NP_064666.1| secretory carrier-associated membrane protein 5 [Mus musculus].
Length = 235
Score = 149 bits (377), Expect = 4e-36
Identities = 69/198 (34%), Positives = 101/198 (51%)
Frame = +2
Query: 503 ATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXXXS 682
A + NN+PPLP F P++PCF+QD +IP + +YYLWM ++ +
Sbjct: 2 AEKVNNFPPLPKFIPLKPCFYQDFEADIPPQHLSLTKRLYYLWMLNS-VTLAVNLVGCLA 60
Query: 683 FCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVLYV 862
+ + + FGL+ LW++LFTPCS+VCW+RP+YKA Q V+ +
Sbjct: 61 WLIGGGGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFFTFMAQLVISI 120
Query: 863 LQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYRRTG 1042
+QA+GIPGWG GWI+ +AV + L +H YR +G
Sbjct: 121 IQAVGIPGWGVCGWIATISFFGTNIGSAVVMLIPTVMFTVVAVFSFIALSMVHKFYRGSG 180
Query: 1043 ASFQKAQQEFAAGVFSNP 1096
SF KAQ+E+ G + NP
Sbjct: 181 GSFSKAQEEWTTGAWKNP 198
>ref|NP_062521.1| secretory carrier-associated membrane protein 4 [Mus musculus].
Length = 230
Score = 147 bits (371), Expect = 2e-35
Identities = 76/200 (38%), Positives = 106/200 (53%), Gaps = 2/200 (1%)
Frame = +2
Query: 503 ATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWM--CSTXXXXXXXXXXX 676
A ++NN+PPLP F P++PCF+QD S EIP E Q V +Y LWM C+T
Sbjct: 2 AGKENNFPPLPPFLPLKPCFYQDFSDEIPVEHQVLVKRIYRLWMFYCAT---LGVNLVAC 58
Query: 677 XSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVL 856
++ + G+ FGL++LW++LFTPCS+VCW+RP YKA Q VL
Sbjct: 59 LAWWIAGGAGANFGLALLWLVLFTPCSYVCWFRPAYKAFRADSSFNFMTFFFIFGAQFVL 118
Query: 857 YVLQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYRR 1036
V+QAIG GWG GW++ A++ V + ++H +YR
Sbjct: 119 TVIQAIGFSGWGACGWLAAVGFFGTSVGAAVVMLVPAILFSLSALVMAVTIVKVHRIYRG 178
Query: 1037 TGASFQKAQQEFAAGVFSNP 1096
G S QKAQ E++AG + NP
Sbjct: 179 AGGSLQKAQTEWSAGTWRNP 198
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 46,488,563
Number of extensions: 1233935
Number of successful extensions: 4970
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4905
Number of HSP's successfully gapped: 5
Length of query: 499
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 393
Effective length of database: 12,433,743
Effective search space: 4886460999
Effective search space used: 4886460999
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0138_A08
(1499 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001172098.1| secretory carrier membrane protein 3 [Sus sc... 451 e-127
Alignment gi|XP_003355196.1| PREDICTED: secretory carrier-associated memb... 263 2e-70
Alignment gi|NP_999410.1| secretory carrier-associated membrane protein 1... 219 2e-57
Alignment gi|NP_001230421.1| secretory carrier-associated membrane protei... 216 3e-56
Alignment gi|XP_001924607.1| PREDICTED: secretory carrier-associated memb... 149 5e-36
Alignment gi|XP_003361661.1| PREDICTED: secretory carrier-associated memb... 142 6e-34
>ref|NP_001172098.1| secretory carrier membrane protein 3 [Sus scrofa].
Length = 347
Score = 451 bits (1160), Expect = e-127
Identities = 230/321 (71%), Positives = 230/321 (71%)
Frame = +2
Query: 134 DGGNPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXX 313
DGGNPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETR
Sbjct: 6 DGGNPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETREPPPSYEAPAPVPVAPPS 65
Query: 314 XXXLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAAL 493
LQSSRKLSPTEPKNYGSY ELNRKAEELDRRERELQHAAL
Sbjct: 66 AAPLQSSRKLSPTEPKNYGSYSTQASAAAATAELLKKQEELNRKAEELDRRERELQHAAL 125
Query: 494 GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXX 673
GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCST
Sbjct: 126 GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALLLNFLAC 185
Query: 674 XXSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDV 853
SFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKA VQDV
Sbjct: 186 LASFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAFRSDSSFNFFVFFFIFFVQDV 245
Query: 854 LYVLQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYR 1033
LYVLQAIGIPGWGFSGWIS GIAVLGIVMLKRIHSLYR
Sbjct: 246 LYVLQAIGIPGWGFSGWISALMLVNTNAAVAVLMLLVALFFTGIAVLGIVMLKRIHSLYR 305
Query: 1034 RTGASFQKAQQEFAAGVFSNP 1096
RTGASFQKAQQEFAAGVFSNP
Sbjct: 306 RTGASFQKAQQEFAAGVFSNP 326
>ref|XP_003355196.1| PREDICTED: secretory carrier-associated membrane protein 3-like
[Sus scrofa].
Length = 197
Score = 263 bits (672), Expect = 2e-70
Identities = 129/168 (76%), Positives = 129/168 (76%)
Frame = +2
Query: 134 DGGNPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXX 313
DGGNPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETR
Sbjct: 6 DGGNPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETREPPPSYEAPAPVPVAPPS 65
Query: 314 XXXLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAAL 493
LQSSRKLSPTEPKNYGSY ELNRKAEELDRRERELQHAAL
Sbjct: 66 AAPLQSSRKLSPTEPKNYGSYSTQASAAAATAELLKKQEELNRKAEELDRRERELQHAAL 125
Query: 494 GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMC 637
GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMC
Sbjct: 126 GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMC 173
>ref|NP_999410.1| secretory carrier-associated membrane protein 1 [Sus scrofa].
Length = 338
Score = 219 bits (559), Expect = 2e-57
Identities = 134/319 (42%), Positives = 159/319 (49%), Gaps = 2/319 (0%)
Frame = +2
Query: 143 NPFAEPGELDNPFQDPAVIQ-HRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXXXX 319
NPFA+P +L+NPF+DP+V Q R P LD YNPF
Sbjct: 7 NPFADP-DLNNPFKDPSVTQVTRNVPP--GLDEYNPFSDSRTPPPGNVKMPNVPSTQPAI 63
Query: 320 XLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXE-LNRKAEELDRRERELQHAALG 496
+ PTE + +Y E L RKA ELDRRERE+Q+ +
Sbjct: 64 -------MKPTE--EHPAYTQIAKEHALAQAELLKRQEELERKAAELDRREREMQNLSQH 114
Query: 497 GTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXX 676
G R+NNWPPLP PV PCF+QD S++IP EFQKTV MYYLWM
Sbjct: 115 G---RKNNWPPLPGNFPVGPCFYQDFSVDIPVEFQKTVKIMYYLWMFHAVTLFLNIFGCL 171
Query: 677 XSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVL 856
FCV+ + G FGLSILW LLFTPCSFVCWYRP+Y A Q +
Sbjct: 172 AWFCVDPSRGVDFGLSILWFLLFTPCSFVCWYRPLYGAFRSDSSFRFFVFFFVYICQFAV 231
Query: 857 YVLQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYRR 1036
+VLQA G WG GWIS AV+ +VM K++H LYR
Sbjct: 232 HVLQAAGFHNWGNCGWISSLTGLNQSIPVGIMMIIIAALFTASAVISLVMFKKVHGLYRT 291
Query: 1037 TGASFQKAQQEFAAGVFSN 1093
TGASF+KAQQEFA GV SN
Sbjct: 292 TGASFEKAQQEFATGVMSN 310
>ref|NP_001230421.1| secretory carrier-associated membrane protein 2 [Sus scrofa].
Length = 328
Score = 216 bits (550), Expect = 3e-56
Identities = 123/317 (38%), Positives = 166/317 (52%)
Frame = +2
Query: 143 NPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXXXXX 322
NPFA+P ++ NPFQDP+V Q +PQ L +NPF
Sbjct: 7 NPFADPVDV-NPFQDPSVTQLTNAPQ-GGLAEFNPFSETNAATTVPVTQLPGPSQPAV-- 62
Query: 323 LQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAALGGT 502
LQ S + PT+P EL+RKA EL+R+ERELQ+ +
Sbjct: 63 LQPS--VEPTQPTPQA------VASAAQASLLRQQEELDRKAAELERKERELQNT-VANL 113
Query: 503 ATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXXXS 682
R+NNWPPLP +CP++PCF+QD S EIP ++Q+ +YYLWM +
Sbjct: 114 HVRENNWPPLPIWCPIKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAW 173
Query: 683 FCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVLYV 862
F V+T+ G FGLSILW ++FTPC+F+CWYRP+YKA Q +Y+
Sbjct: 174 FLVDTSRGVDFGLSILWFVIFTPCAFLCWYRPIYKAFRSDNSFSFFVFFFVFFCQIGIYI 233
Query: 863 LQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYRRTG 1042
+Q +GIP G SGWI+ AVL + +LKR+HSLYRRTG
Sbjct: 234 IQLVGIPSLGDSGWIAALSTLKEDLAVSIIMMVVAGFFTLCAVLSLFLLKRVHSLYRRTG 293
Query: 1043 ASFQKAQQEFAAGVFSN 1093
ASFQ+AQ+EF+ G+FS+
Sbjct: 294 ASFQQAQEEFSQGIFSS 310
>ref|XP_001924607.1| PREDICTED: secretory carrier-associated membrane protein 5-like [Sus
scrofa].
Length = 235
Score = 149 bits (375), Expect = 5e-36
Identities = 69/198 (34%), Positives = 101/198 (51%)
Frame = +2
Query: 503 ATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXXXS 682
A + NN+PPLP F P++PCF+QD +IP + +YYLWM ++ +
Sbjct: 2 AEKVNNFPPLPKFIPLKPCFYQDFEADIPPQHLSMTKRLYYLWMLNS-VTLAVNLVGCLA 60
Query: 683 FCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVLYV 862
+ + + FGL+ LW++LFTPCS+VCW+RP+YKA Q V+ +
Sbjct: 61 WLIGGGGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFFTFMAQLVISI 120
Query: 863 LQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYRRTG 1042
+QA+GIPGWG GWI+ +AV + L +H YR +G
Sbjct: 121 IQAVGIPGWGVCGWIATISFFGTNVGSAVVMLIPTIMFTVMAVFSFIALSMVHKFYRGSG 180
Query: 1043 ASFQKAQQEFAAGVFSNP 1096
SF KAQ+E+ G + NP
Sbjct: 181 GSFSKAQEEWTTGAWKNP 198
>ref|XP_003361661.1| PREDICTED: secretory carrier-associated membrane protein 1-like,
partial [Sus scrofa].
Length = 229
Score = 142 bits (357), Expect = 6e-34
Identities = 74/126 (58%), Positives = 84/126 (66%), Gaps = 6/126 (4%)
Frame = +2
Query: 431 ELNRKAEELDRRERELQHAALGGTATRQNNWPPLPSFCPVQPCFFQ------DISMEIPQ 592
EL RKA ELDRRERE+Q+ + G R+NNWPPLP PV PCF+Q D S++IP
Sbjct: 106 ELERKAAELDRREREMQNLSQHG---RKNNWPPLPGNFPVGPCFYQYFSVXQDFSVDIPV 162
Query: 593 EFQKTVSTMYYLWMCSTXXXXXXXXXXXXSFCVETNTGSGFGLSILWILLFTPCSFVCWY 772
EFQKTV MYYLWM CV+ + G FGLSILW LLFTPCSFVCWY
Sbjct: 163 EFQKTVKIMYYLWMFHAVTLFLNIFGXXXXXCVDPSRGVDFGLSILWFLLFTPCSFVCWY 222
Query: 773 RPMYKA 790
RP+Y A
Sbjct: 223 RPLYGA 228
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,039,452
Number of extensions: 984206
Number of successful extensions: 3813
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3779
Number of HSP's successfully gapped: 6
Length of query: 499
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 396
Effective length of database: 8,779,541
Effective search space: 3476698236
Effective search space used: 3476698236
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0138_A08
(1499 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 900 0.0
>Sscrofa_Chr04
|| Length = 143465943
Score = 900 bits (454), Expect = 0.0
Identities = 457/458 (99%)
Strand = Plus / Plus
Query: 1015 gatccactccttgtatcgccgcacgggtgccagctttcagaaggcccagcaagaatttgc 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103356940 gatccactccttgtatcgccgcacgggtgccagctttcagaaggcccagcaagaatttgc 103356999
Query: 1075 tgctggtgtcttctccaaccctgcggtgcgaactgcagctgccaatgcagccgctggagc 1134
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103357000 tgccggtgtcttctccaaccctgcggtgcgaactgcagctgccaatgcagccgctggagc 103357059
Query: 1135 tgccgaaaatgccttccgggccccgtgacccctgactgggatgctctggccctgccactt 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103357060 tgccgaaaatgccttccgggccccgtgacccctgactgggatgctctggccctgccactt 103357119
Query: 1195 gagggagctgacctagcccccatccctgaggtctctgggactttgtgagacttcactact 1254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103357120 gagggagctgacctagcccccatccctgaggtctctgggactttgtgagacttcactact 103357179
Query: 1255 tgatgtctccgctctagtgcccccagtctcacagccatgactgctgaacctgacttaagg 1314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103357180 tgatgtctccgctctagtgcccccagtctcacagccatgactgctgaacctgacttaagg 103357239
Query: 1315 gtgtcgagagccccctgtgacccagtcactgcttccctcccacccgccaaatcaggccac 1374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103357240 gtgtcgagagccccctgtgacccagtcactgcttccctcccacccgccaaatcaggccac 103357299
Query: 1375 actgctgccacctctacacaccccaacccagcttccctctgctgtgccaaggctgttgct 1434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103357300 actgctgccacctctacacaccccaacccagcttccctctgctgtgccaaggctgttgct 103357359
Query: 1435 tcggttatttaaataaaaagaaagtggaactggaacac 1472
||||||||||||||||||||||||||||||||||||||
Sbjct: 103357360 tcggttatttaaataaaaagaaagtggaactggaacac 103357397
Score = 367 bits (185), Expect = 1e-98
Identities = 185/185 (100%)
Strand = Plus / Plus
Query: 1 gagaagcggggcggaccgagaggagcggagcggagggagctcttgagagccacggccgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103352795 gagaagcggggcggaccgagaggagcggagcggagggagctcttgagagccacggccgcc 103352854
Query: 61 gccactgccgcggcaggggcgtggagggcagggggcggcccgggccgcggttgcaaacat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103352855 gccactgccgcggcaggggcgtggagggcagggggcggcccgggccgcggttgcaaacat 103352914
Query: 121 ggctcaaagcagagatggtggaaaccccttcgccgagcccggcgagcttgacaacccctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103352915 ggctcaaagcagagatggtggaaaccccttcgccgagcccggcgagcttgacaacccctt 103352974
Query: 181 tcagg 185
|||||
Sbjct: 103352975 tcagg 103352979
Score = 319 bits (161), Expect = 2e-84
Identities = 161/161 (100%)
Strand = Plus / Plus
Query: 636 gcagcaccctggctcttctcctgaatttcctcgcctgcctggctagcttctgtgtggaga 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103355635 gcagcaccctggctcttctcctgaatttcctcgcctgcctggctagcttctgtgtggaga 103355694
Query: 696 ccaacactggctcaggcttcgggctctcaatcctctggatcctcctgttcactccctgct 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103355695 ccaacactggctcaggcttcgggctctcaatcctctggatcctcctgttcactccctgct 103355754
Query: 756 ccttcgtctgctggtaccgtcccatgtataaggccttccgg 796
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 103355755 ccttcgtctgctggtaccgtcccatgtataaggccttccgg 103355795
Score = 258 bits (130), Expect = 8e-66
Identities = 130/130 (100%)
Strand = Plus / Plus
Query: 507 ctcgacagaacaattggcctcctctaccttcgttttgcccagttcagccctgcttcttcc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103355062 ctcgacagaacaattggcctcctctaccttcgttttgcccagttcagccctgcttcttcc 103355121
Query: 567 aggacatctctatggagatcccccaagaatttcagaagacagtatccacgatgtactacc 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103355122 aggacatctctatggagatcccccaagaatttcagaagacagtatccacgatgtactacc 103355181
Query: 627 tctggatgtg 636
||||||||||
Sbjct: 103355182 tctggatgtg 103355191
Score = 246 bits (124), Expect = 3e-62
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 383 caggcttcagctgcagcagccacagctgaactgctaaagaagcaggaggagctcaaccgg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103354514 caggcttcagctgcagcagccacagctgaactgctaaagaagcaggaggagctcaaccgg 103354573
Query: 443 aaggcagaggagttggaccggagggagcgagagctgcagcatgctgccctggggggcaca 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103354574 aaggcagaggagttggaccggagggagcgagagctgcagcatgctgccctggggggcaca 103354633
Query: 503 gcta 506
||||
Sbjct: 103354634 gcta 103354637
Score = 240 bits (121), Expect = 2e-60
Identities = 121/121 (100%)
Strand = Plus / Plus
Query: 895 cagtggctggatctccgctttgatgttggtgaacaccaacgcggctgtagctgtgcttat 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103356545 cagtggctggatctccgctttgatgttggtgaacaccaacgcggctgtagctgtgcttat 103356604
Query: 955 gctgctggtcgccctgttcttcactggcatcgctgtgctgggaattgtgatgctaaagcg 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103356605 gctgctggtcgccctgttcttcactggcatcgctgtgctgggaattgtgatgctaaagcg 103356664
Query: 1015 g 1015
|
Sbjct: 103356665 g 103356665
Score = 220 bits (111), Expect = 2e-54
Identities = 124/127 (97%), Gaps = 1/127 (0%)
Strand = Plus / Plus
Query: 261 agccaccaccaagctatgagcctcctgcccctgttccagttgcaccaccctcagccgccc 320
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 103354305 agccaccaccaagctatgaggctcctgcccctgttccagttgcaccaccttcagccgccc 103354364
Query: 321 ccttgcagtcctcgagaaagctcagccccacagaacccaag-aactatggttcctacagc 379
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 103354365 ccttgcagtcctcgagaaagctcagccccacagaacccaagaaactatggttcctacagc 103354424
Query: 380 acccagg 386
|||||||
Sbjct: 103354425 acccagg 103354431
Score = 204 bits (103), Expect = 1e-49
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 795 ggagtgacagttcattcaatttcttcgttttcttcttcattttcttcgtccaggatgtcc 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103355902 ggagtgacagttcattcaatttcttcgttttcttcttcattttcttcgtccaggatgtcc 103355961
Query: 855 tatatgttctgcaggccattggcatcccaggttgggggttcag 897
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103355962 tatatgttctgcaggccattggcatcccaggttgggggttcag 103356004
Score = 161 bits (81), Expect = 1e-36
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 182 caggacccagctgtgatccagcaccgacccagcccgcagtatgccacgcttgacgtctac 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103353301 caggacccagctgtgatccagcaccgacccagcccgcagtatgccacgcttgacgtctac 103353360
Query: 242 aacccttttgagacccgggag 262
|||||||||||||||||||||
Sbjct: 103353361 aacccttttgagacccgggag 103353381
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 42,920,862
Number of extensions: 485
Number of successful extensions: 485
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 484
Number of HSP's successfully gapped: 9
Length of query: 1499
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1478
Effective length of database: 2,808,413,156
Effective search space: 4150834644568
Effective search space used: 4150834644568
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)