Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0158_D08
(1501 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006359.3| cyclic AMP-responsive element-binding protein 3... 374 e-103
Alignment gi|NP_570968.1| cyclic AMP-responsive element-binding protein 3... 97 4e-20
Alignment gi|NP_115996.1| cyclic AMP-responsive element-binding protein 3... 86 1e-16
Alignment gi|NP_919047.2| cyclic AMP-responsive element-binding protein 3... 70 5e-12
Alignment gi|NP_443086.1| cyclic AMP-responsive element-binding protein 3... 67 6e-11
>ref|NP_006359.3| cyclic AMP-responsive element-binding protein 3 [Homo sapiens].
Length = 371
Score = 374 bits (961), Expect = e-103
Identities = 208/348 (59%), Positives = 234/348 (67%), Gaps = 8/348 (2%)
Frame = +1
Query: 193 ARDEALEAPLDWELPLSEALSDWDVEDFLSCLSSPPASLTDFSHSDPYLVHHDHTYSLSQ 372
A DEA+ APLDW LPLSE SDW+V+D L L SPPASL S S+P LVHHDHTYSL +
Sbjct: 26 APDEAVRAPLDWALPLSEVPSDWEVDDLLCSLLSPPASLNILSSSNPCLVHHDHTYSLPR 85
Query: 373 EYVSIDLDNEDYEKEGARMTSLRVEAPAEQEIGXXXXXXXXXXXXXXXXXXXXXXXXXXR 552
E VS+DL++E KEG +MT +E AEQEI +
Sbjct: 86 ETVSMDLESESCRKEGTQMTPQHMEELAEQEIARLVLTDEEKSLLEKEGLILPETLPLTK 145
Query: 553 MEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQNXX 732
EEQ+L+RVRRKIRNK+SAQESRRKKKVYVG LESRVLKY+AQN+ELQNKVQLLEEQN
Sbjct: 146 TEEQILKRVRRKIRNKRSAQESRRKKKVYVGGLESRVLKYTAQNMELQNKVQLLEEQNLS 205
Query: 733 XXXXXXXXXXMVIQTANKASSSSTCIXXXXXXXXXXXXPAMYSSDTRGSPPAEHGVLSRQ 912
MVI+ +NK SSSSTCI PAMYSSDTRGS PAEHGVLSRQ
Sbjct: 206 LLDQLRKLQAMVIEISNKTSSSSTCILVLLVSFCLLLVPAMYSSDTRGSLPAEHGVLSRQ 265
Query: 913 LRALPSEDVPQRDLPALQSEVPQDSSTHE--------LQAPGNSCCLFHHMAWAPGAESP 1068
LRALPSED Q +LPALQSEVP+D STH+ LQAPGN+ CL H+M AP AE P
Sbjct: 266 LRALPSEDPYQLELPALQSEVPKD-STHQWLDGSDCVLQAPGNTSCLLHYMPQAPSAEPP 324
Query: 1069 MKLPLPDRFSRSSSPGPIFPLHANLTREGGWPPTHSPISVTLQGRYSG 1212
++ P PD FS GPI PL ANLTR+GGW PT SP SV LQ RYSG
Sbjct: 325 LEWPFPDLFSEPLCRGPILPLQANLTRKGGWLPTGSP-SVILQDRYSG 371
>ref|NP_570968.1| cyclic AMP-responsive element-binding protein 3-like protein 4
[Homo sapiens].
Length = 395
Score = 97.1 bits (240), Expect = 4e-20
Identities = 58/136 (42%), Positives = 78/136 (57%), Gaps = 4/136 (2%)
Frame = +1
Query: 550 RMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQNX 729
+ EE+VL++VRRKIRNK+SAQ+SRR+KK Y+ LESRV SAQN ELQ KVQ LE N
Sbjct: 212 KAEERVLKKVRRKIRNKQSAQDSRRRKKEYIDGLESRVAACSAQNQELQKKVQELERHNI 271
Query: 730 XXXXXXXXXXXMVIQTANKASSSSTCIXXXXXXXXXXXXPAMYSSDTRGSPPAE----HG 897
++ QT+NKA+ +STC+ P+ +R +E HG
Sbjct: 272 SLVAQLRQLQTLIAQTSNKAAQTSTCVLILLFSLALIILPSFSPFQSRPEAGSEDYQPHG 331
Query: 898 VLSRQLRALPSEDVPQ 945
V SR + L +DV +
Sbjct: 332 VTSRNI--LTHKDVTE 345
>ref|NP_115996.1| cyclic AMP-responsive element-binding protein 3-like protein 3 [Homo
sapiens].
Length = 461
Score = 85.5 bits (210), Expect = 1e-16
Identities = 55/161 (34%), Positives = 89/161 (55%), Gaps = 5/161 (3%)
Frame = +1
Query: 550 RMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQNX 729
+ EE+VL+++RRKIRNK+SAQESR+KKK Y+ LE+R+ +AQN ELQ KV LE+QN
Sbjct: 238 KYEERVLKKIRRKIRNKQSAQESRKKKKEYIDGLETRMSACTAQNQELQRKVLHLEKQNL 297
Query: 730 XXXXXXXXXXXMVIQTANKASSSSTCIXXXXXXXXXXXXPAM--YSSDTRGSPP--AEHG 897
+V+Q+ +K++ + TC+ P++ + + SP A
Sbjct: 298 SLLEQLKKLQAIVVQSTSKSAQTGTCVAVLLLSFALIILPSISPFGPNKTESPGDFAPVR 357
Query: 898 VLSRQLRALPSEDVPQRDLPALQSEVPQ-DSSTHELQAPGN 1017
V SR L + V +P ++ P+ ++ T ++PG+
Sbjct: 358 VFSRTLHNDAASRVAADAVPGSEAPGPRPEADTTREESPGS 398
>ref|NP_919047.2| cyclic AMP-responsive element-binding protein 3-like protein 2
[Homo sapiens].
Length = 520
Score = 70.1 bits (170), Expect = 5e-12
Identities = 34/59 (57%), Positives = 46/59 (77%)
Frame = +1
Query: 550 RMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQN 726
+ EE+ L+++RRKI+NK SAQESRRKKK Y+ SLE +V S +NLEL+ KV++LE N
Sbjct: 289 KSEEKALKKIRRKIKNKISAQESRRKKKEYMDSLEKKVESCSTENLELRKKVEVLENTN 347
>ref|NP_443086.1| cyclic AMP-responsive element-binding protein 3-like protein 1
[Homo sapiens].
Length = 519
Score = 66.6 bits (161), Expect = 6e-11
Identities = 34/59 (57%), Positives = 44/59 (74%)
Frame = +1
Query: 550 RMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQN 726
+ EE+ L+RVRRKI+NK SAQESRRKKK YV LE +V ++++N EL KV+ LE N
Sbjct: 285 KAEEKALKRVRRKIKNKISAQESRRKKKEYVECLEKKVETFTSENNELWKKVETLENAN 343
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 61,832,086
Number of extensions: 1867835
Number of successful extensions: 9252
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 9194
Number of HSP's successfully gapped: 5
Length of query: 500
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 393
Effective length of database: 14,770,016
Effective search space: 5804616288
Effective search space used: 5804616288
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0158_D08
(1501 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854750.1| PREDICTED: similar to cAMP responsive element b... 395 e-110
Alignment gi|XP_855139.1| PREDICTED: similar to cAMP responsive element b... 94 3e-19
Alignment gi|XP_542164.2| PREDICTED: similar to cAMP responsive element b... 84 3e-16
Alignment gi|XP_548490.2| PREDICTED: similar to cAMP responsive element b... 70 5e-12
Alignment gi|XP_540756.2| PREDICTED: similar to cAMP responsive element b... 67 6e-11
>ref|XP_854750.1| PREDICTED: similar to cAMP responsive element binding protein 3
[Canis familiaris].
Length = 411
Score = 395 bits (1015), Expect = e-110
Identities = 210/326 (64%), Positives = 232/326 (71%)
Frame = +1
Query: 235 PLSEALSDWDVEDFLSCLSSPPASLTDFSHSDPYLVHHDHTYSLSQEYVSIDLDNEDYEK 414
PLSEALS+W+ EDFLS + SPPASL S SD LVHHDHTYSLSQ++VSIDLD Y K
Sbjct: 86 PLSEALSEWEAEDFLSSMLSPPASLNVLSSSDSCLVHHDHTYSLSQQHVSIDLDGGSYGK 145
Query: 415 EGARMTSLRVEAPAEQEIGXXXXXXXXXXXXXXXXXXXXXXXXXXRMEEQVLRRVRRKIR 594
E A+ T L+VE PAEQEI +MEEQVL RVRRKIR
Sbjct: 146 EEAQTTPLQVEEPAEQEIARLILTDEEKRLLEKEGLTLHGTLPLTKMEEQVLTRVRRKIR 205
Query: 595 NKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQNXXXXXXXXXXXXMVIQ 774
NKKSAQESRRKKKVY+G LE+RVLKY+AQNLELQNKVQLLEEQN M+IQ
Sbjct: 206 NKKSAQESRRKKKVYLGGLENRVLKYTAQNLELQNKVQLLEEQNLSLLDQLRRLQAMLIQ 265
Query: 775 TANKASSSSTCIXXXXXXXXXXXXPAMYSSDTRGSPPAEHGVLSRQLRALPSEDVPQRDL 954
+NK SSSSTC+ PAMYSSDTRGS PAEHGVLSRQLRALPSED Q +L
Sbjct: 266 ISNKTSSSSTCVLVLLFSFCLLIVPAMYSSDTRGSLPAEHGVLSRQLRALPSEDPHQLEL 325
Query: 955 PALQSEVPQDSSTHELQAPGNSCCLFHHMAWAPGAESPMKLPLPDRFSRSSSPGPIFPLH 1134
PALQSEVP+DSS ELQAPGNSCC +H+ APGAESP+KLPLP S+S P+ PLH
Sbjct: 326 PALQSEVPKDSSDQELQAPGNSCCPLYHLPQAPGAESPLKLPLPVPSSKSPCSCPLLPLH 385
Query: 1135 ANLTREGGWPPTHSPISVTLQGRYSG 1212
AN TR+GGW PTHSP SV LQGRYSG
Sbjct: 386 ANFTRDGGWLPTHSPTSVILQGRYSG 411
>ref|XP_855139.1| PREDICTED: similar to cAMP responsive element binding protein
3-like 4 [Canis familiaris].
Length = 384
Score = 94.0 bits (232), Expect = 3e-19
Identities = 55/128 (42%), Positives = 75/128 (58%), Gaps = 6/128 (4%)
Frame = +1
Query: 550 RMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQNX 729
+ EE+VL+++RRKIRNK+SAQ+SRR+KK Y+ LESRV SAQN ELQ KVQ LE N
Sbjct: 201 KAEERVLKKIRRKIRNKQSAQDSRRRKKEYIDGLESRVAACSAQNQELQKKVQELERHNI 260
Query: 730 XXXXXXXXXXXMVIQTANKASSSSTCIXXXXXXXXXXXXPAMYSSDTRGSPPA------E 891
++ QT+NKA+ +STC+ P++ S +G A
Sbjct: 261 SLVTQLRQLQTLIAQTSNKAAQTSTCVLILLFSLALIVLPSV--SPLQGLREAGSEDYQP 318
Query: 892 HGVLSRQL 915
HGV+SR +
Sbjct: 319 HGVISRNI 326
>ref|XP_542164.2| PREDICTED: similar to cAMP responsive element binding protein 3-like
3 [Canis familiaris].
Length = 609
Score = 84.3 bits (207), Expect = 3e-16
Identities = 54/161 (33%), Positives = 85/161 (52%), Gaps = 5/161 (3%)
Frame = +1
Query: 550 RMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQNX 729
+ EE+VL+++RRKIRNK+SAQESR+KKK Y+ LE+R+ +AQN ELQ KV LE+QN
Sbjct: 358 KYEERVLKKIRRKIRNKQSAQESRKKKKEYIDGLETRMSACTAQNQELQRKVLHLEKQNL 417
Query: 730 XXXXXXXXXXXMVIQTANKASSSSTCIXXXXXXXXXXXXPA----MYSSDTRGSPPAEHG 897
+V+Q+ +K++ + TC+ P+ + + A
Sbjct: 418 SLLEQLKKLQAIVVQSTSKSAQTGTCLAVLLFSFALIVLPSISPFVANKAKHAGDYAPVR 477
Query: 898 VLSRQLRALPSEDVPQRDLPALQSEVPQ-DSSTHELQAPGN 1017
V SR L P+ V +P ++ P+ T + +PG+
Sbjct: 478 VFSRTLHNDPASRVAPDAIPGSEAPGPRPKGGTPQEGSPGS 518
>ref|XP_548490.2| PREDICTED: similar to cAMP responsive element binding protein
3-like 2 [Canis familiaris].
Length = 393
Score = 70.1 bits (170), Expect = 5e-12
Identities = 34/59 (57%), Positives = 46/59 (77%)
Frame = +1
Query: 550 RMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQN 726
+ EE+ L+++RRKI+NK SAQESRRKKK Y+ SLE +V S +NLEL+ KV++LE N
Sbjct: 186 KSEEKALKKIRRKIKNKISAQESRRKKKEYMDSLEKKVESCSTENLELRKKVEVLENTN 244
>ref|XP_540756.2| PREDICTED: similar to cAMP responsive element binding protein
3-like 1 [Canis familiaris].
Length = 725
Score = 66.6 bits (161), Expect = 6e-11
Identities = 34/59 (57%), Positives = 44/59 (74%)
Frame = +1
Query: 550 RMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQN 726
+ EE+ L+RVRRKI+NK SAQESRRKKK YV LE +V ++++N EL KV+ LE N
Sbjct: 490 KAEEKALKRVRRKIKNKISAQESRRKKKEYVECLEKKVETFTSENNELWKKVETLENAN 548
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 63,004,535
Number of extensions: 1911903
Number of successful extensions: 9514
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 9426
Number of HSP's successfully gapped: 5
Length of query: 500
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 393
Effective length of database: 15,307,552
Effective search space: 6015867936
Effective search space used: 6015867936
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0158_D08
(1501 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776711.1| cyclic AMP-responsive element-binding protein 3... 436 e-122
Alignment gi|XP_002686042.1| PREDICTED: cAMP responsive element binding p... 97 2e-20
Alignment gi|XP_885877.2| PREDICTED: cAMP responsive element binding prot... 97 2e-20
Alignment gi|NP_001029604.1| cyclic AMP-responsive element-binding protei... 84 4e-16
Alignment gi|XP_002689745.1| PREDICTED: hypothetical protein [Bos taurus]. 49 8e-13
Alignment gi|NP_001096003.1| cyclic AMP-responsive element-binding protei... 70 5e-12
Alignment gi|NP_001179270.1| cyclic AMP-responsive element-binding protei... 67 5e-11
Alignment gi|XP_002693578.1| PREDICTED: cAMP responsive element binding p... 67 5e-11
>ref|NP_776711.1| cyclic AMP-responsive element-binding protein 3 [Bos taurus].
Length = 365
Score = 436 bits (1120), Expect = e-122
Identities = 235/341 (68%), Positives = 249/341 (73%)
Frame = +1
Query: 190 AARDEALEAPLDWELPLSEALSDWDVEDFLSCLSSPPASLTDFSHSDPYLVHHDHTYSLS 369
AA DEAL +P DWELPLSE+LSDWDVEDFLSCL SPPA L FS+SDP LV HDHTYSLS
Sbjct: 25 AAPDEALTSPPDWELPLSESLSDWDVEDFLSCLPSPPAVLNVFSNSDPCLVQHDHTYSLS 84
Query: 370 QEYVSIDLDNEDYEKEGARMTSLRVEAPAEQEIGXXXXXXXXXXXXXXXXXXXXXXXXXX 549
QE+VSIDLDNE YEKE A+MT LRVE PA+QEI
Sbjct: 85 QEHVSIDLDNESYEKERAQMTPLRVEEPADQEIARLILTEEEKRLLEKEGLTLPGMLPLT 144
Query: 550 RMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQNX 729
+MEEQVL+RVRRKIRNKKSAQESRRKKKVYVG LESRVLKY+AQNLELQNKVQLLEEQN
Sbjct: 145 KMEEQVLKRVRRKIRNKKSAQESRRKKKVYVGGLESRVLKYTAQNLELQNKVQLLEEQNL 204
Query: 730 XXXXXXXXXXXMVIQTANKASSSSTCIXXXXXXXXXXXXPAMYSSDTRGSPPAEHGVLSR 909
MVIQTANKASSSSTC+ PAMYSSDTRGS PAEH VLSR
Sbjct: 205 SLLDQLRRLQAMVIQTANKASSSSTCVLVLLFSFCLLLVPAMYSSDTRGSLPAEHRVLSR 264
Query: 910 QLRALPSEDVPQRDLPALQSEVPQDSSTHELQAPGNSCCLFHHMAWAPGAESPMKLPLPD 1089
QLRALPSED PQ + PALQSEVP+DS ELQA NSCCLFH M AP AE P++LPLPD
Sbjct: 265 QLRALPSEDPPQLEPPALQSEVPKDSLNPELQAASNSCCLFHLMPQAPRAEPPLQLPLPD 324
Query: 1090 RFSRSSSPGPIFPLHANLTREGGWPPTHSPISVTLQGRYSG 1212
FS S P I PLHANLTRE GW PT SP SV LQGRYSG
Sbjct: 325 GFSGCSCPDSISPLHANLTREEGWLPTPSPTSVILQGRYSG 365
>ref|XP_002686042.1| PREDICTED: cAMP responsive element binding protein 3-like 4-like
[Bos taurus].
Length = 425
Score = 97.4 bits (241), Expect(2) = 2e-20
Identities = 56/128 (43%), Positives = 76/128 (59%), Gaps = 6/128 (4%)
Frame = +1
Query: 550 RMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQNX 729
+ EE+VL++VRRKIRNK+SAQ+SRR+KK Y+ LESRV +AQN ELQ KVQ LE N
Sbjct: 242 KAEERVLKKVRRKIRNKQSAQDSRRRKKEYIDGLESRVAACAAQNQELQRKVQELERHNI 301
Query: 730 XXXXXXXXXXXMVIQTANKASSSSTCIXXXXXXXXXXXXPAMYSSDTRGSPPA------E 891
+++QT+NKA+ +STC+ P+ S +G P A
Sbjct: 302 SLVTQLRQLQMLIVQTSNKAAQTSTCVLILLFSLALIILPSF--SPFQGLPEAGPEDYQP 359
Query: 892 HGVLSRQL 915
HGV+SR +
Sbjct: 360 HGVISRNI 367
Score = 21.2 bits (43), Expect(2) = 2e-20
Identities = 13/44 (29%), Positives = 15/44 (34%)
Frame = +3
Query: 1035 PHGLGSWGRIAHEAATARPLLKVF*PRSHLPPACKSHKRGRMAP 1166
PHG+ S + H T P V R PP K P
Sbjct: 359 PHGVISRNILTHRDMTENPENAVEESRLEGPPGAKGANSSTRTP 402
>ref|XP_885877.2| PREDICTED: cAMP responsive element binding protein 3-like 4-like
isoform 2 [Bos taurus].
Length = 425
Score = 97.4 bits (241), Expect(2) = 2e-20
Identities = 56/128 (43%), Positives = 76/128 (59%), Gaps = 6/128 (4%)
Frame = +1
Query: 550 RMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQNX 729
+ EE+VL++VRRKIRNK+SAQ+SRR+KK Y+ LESRV +AQN ELQ KVQ LE N
Sbjct: 242 KAEERVLKKVRRKIRNKQSAQDSRRRKKEYIDGLESRVAACAAQNQELQRKVQELERHNI 301
Query: 730 XXXXXXXXXXXMVIQTANKASSSSTCIXXXXXXXXXXXXPAMYSSDTRGSPPA------E 891
+++QT+NKA+ +STC+ P+ S +G P A
Sbjct: 302 SLVTQLRQLQMLIVQTSNKAAQTSTCVLILLFSLALIILPSF--SPFQGLPEAGPEDYQP 359
Query: 892 HGVLSRQL 915
HGV+SR +
Sbjct: 360 HGVISRNI 367
Score = 21.2 bits (43), Expect(2) = 2e-20
Identities = 13/44 (29%), Positives = 15/44 (34%)
Frame = +3
Query: 1035 PHGLGSWGRIAHEAATARPLLKVF*PRSHLPPACKSHKRGRMAP 1166
PHG+ S + H T P V R PP K P
Sbjct: 359 PHGVISRNILTHRDMTENPENAVEESRLEGPPGAKGANSSTRTP 402
>ref|NP_001029604.1| cyclic AMP-responsive element-binding protein 3-like protein 3 [Bos
taurus].
Length = 456
Score = 83.6 bits (205), Expect = 4e-16
Identities = 55/161 (34%), Positives = 89/161 (55%), Gaps = 5/161 (3%)
Frame = +1
Query: 550 RMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQNX 729
+ EE++L+++RRKIRNK+SAQESR+KKK Y+ LE+R+ +AQN ELQ KV LE+QN
Sbjct: 233 KYEERMLKKIRRKIRNKQSAQESRKKKKEYIDGLETRMSACTAQNQELQRKVLHLEKQNL 292
Query: 730 XXXXXXXXXXXMVIQTANKASSSSTCIXXXXXXXXXXXXPAM--YSSDTRGSPP--AEHG 897
+V+Q+ +K++ + TCI P++ ++S+ SP A
Sbjct: 293 SLLEQLKKLQAIVVQSTSKSAQTGTCIAVLLFSFALIVLPSISPFASNRAESPGDFAPVR 352
Query: 898 VLSRQLRALPSEDVPQRDLPALQSEVP-QDSSTHELQAPGN 1017
V SR L + V P ++ P ++ + ++PG+
Sbjct: 353 VFSRTLHNDAASRVAPDTAPGSEAPGPGPNTGALQERSPGS 393
>ref|XP_002689745.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 169
Score = 49.3 bits (116), Expect(2) = 8e-13
Identities = 29/53 (54%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Frame = -1
Query: 160 SPASHRHPSPTPAPYETSTERMSRNTEVH-PESTPNPT-HDSHRSSVGHTYGL 8
S A HP PTPAPYET TE+M RNT VH T +P + R SVG TY L
Sbjct: 92 SLAGRGHPGPTPAPYETFTEKMRRNTGVHFATRTLSPARRNRDRLSVGPTYRL 144
Score = 43.5 bits (101), Expect(2) = 8e-13
Identities = 20/27 (74%), Positives = 23/27 (85%)
Frame = -2
Query: 324 VAKIGQRCWGTRQAAQEILYVPIAQCL 244
VA+ Q CWGTRQAAQEIL+VP+AQ L
Sbjct: 36 VAENVQHCWGTRQAAQEILHVPVAQRL 62
>ref|NP_001096003.1| cyclic AMP-responsive element-binding protein 3-like protein 2 [Bos
taurus].
Length = 520
Score = 70.1 bits (170), Expect = 5e-12
Identities = 34/59 (57%), Positives = 46/59 (77%)
Frame = +1
Query: 550 RMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQN 726
+ EE+ L+++RRKI+NK SAQESRRKKK Y+ SLE +V S +NLEL+ KV++LE N
Sbjct: 289 KSEEKALKKIRRKIKNKISAQESRRKKKEYMDSLEKKVESCSTENLELRKKVEVLENTN 347
>ref|NP_001179270.1| cyclic AMP-responsive element-binding protein 3-like protein 1 [Bos
taurus].
Length = 520
Score = 66.6 bits (161), Expect = 5e-11
Identities = 34/59 (57%), Positives = 44/59 (74%)
Frame = +1
Query: 550 RMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQN 726
+ EE+ L+RVRRKI+NK SAQESRRKKK YV LE +V ++++N EL KV+ LE N
Sbjct: 285 KAEEKALKRVRRKIKNKISAQESRRKKKEYVECLEKKVETFTSENNELWKKVETLENAN 343
>ref|XP_002693578.1| PREDICTED: cAMP responsive element binding protein 3-like 1 [Bos
taurus].
Length = 520
Score = 66.6 bits (161), Expect = 5e-11
Identities = 34/59 (57%), Positives = 44/59 (74%)
Frame = +1
Query: 550 RMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQN 726
+ EE+ L+RVRRKI+NK SAQESRRKKK YV LE +V ++++N EL KV+ LE N
Sbjct: 285 KAEEKALKRVRRKIKNKISAQESRRKKKEYVECLEKKVETFTSENNELWKKVETLENAN 343
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 60,607,464
Number of extensions: 1855704
Number of successful extensions: 9182
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 9130
Number of HSP's successfully gapped: 11
Length of query: 500
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 394
Effective length of database: 14,174,046
Effective search space: 5584574124
Effective search space used: 5584574124
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0158_D08
(1501 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_038525.2| cyclic AMP-responsive element-binding protein 3... 272 4e-73
Alignment gi|NP_084356.1| cyclic AMP-responsive element-binding protein 3... 93 6e-19
Alignment gi|NP_663340.1| cyclic AMP-responsive element-binding protein 3... 84 4e-16
Alignment gi|XP_919654.3| PREDICTED: cyclic AMP-responsive element-bindin... 70 4e-12
Alignment gi|NP_848776.2| cyclic AMP-responsive element-binding protein 3... 70 4e-12
Alignment gi|NP_036087.2| cyclic AMP-responsive element-binding protein 3... 68 2e-11
>ref|NP_038525.2| cyclic AMP-responsive element-binding protein 3 [Mus musculus].
Length = 379
Score = 272 bits (696), Expect = 4e-73
Identities = 173/353 (49%), Positives = 198/353 (56%), Gaps = 12/353 (3%)
Frame = +1
Query: 190 AARDEALEAPLDWELPLSE----ALSDWDVEDFLSCLSSPPASLTDFSHSDPYLVHHDHT 357
AA + ++APLD EL SE LSDW+VED LS L SP S D S + HDH
Sbjct: 31 AATEPDVKAPLDLELSPSENSVQELSDWEVEDLLSSLLSPSVS-RDVLGSSSSSILHDHN 89
Query: 358 YSLSQEYVSIDLDNEDYEKEGARMTSLR-VEAPAEQEIGXXXXXXXXXXXXXXXXXXXXX 534
YSL QE+VSIDLD E +EKEG +T L E AEQE+
Sbjct: 90 YSLPQEHVSIDLDTESFEKEGFHVTPLPGEERAAEQEMSRLILTEEEKKLLEKEGLTLPS 149
Query: 535 XXXXXRMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLL 714
++EEQVL+RVRRKIRNK++AQESR+KKKVYV LESRVLKY+AQN ELQNKVQ L
Sbjct: 150 TLPLTKVEEQVLKRVRRKIRNKRAAQESRKKKKVYVVGLESRVLKYTAQNRELQNKVQRL 209
Query: 715 EEQNXXXXXXXXXXXXMVIQTANKASSSSTCIXXXXXXXXXXXXPAMYSSDTRGSPPAEH 894
EEQN MVI+ ANK SS STC+ PAMYSSD RGS PAE+
Sbjct: 210 EEQNLSLLDQLRKLQAMVIEIANKTSSGSTCVLVLVFSFCLLLVPAMYSSDARGSVPAEY 269
Query: 895 GVLSRQLRALPSEDVPQRDLPALQSEVPQ-------DSSTHELQAPGNSCCLFHHMAWAP 1053
VL R+LRALPSED Q AL SE+P DSS H N C+ +H AP
Sbjct: 270 VVLHRKLRALPSEDDHQPKPSALSSELPMDSTHQSLDSSEHMFLVSSNFSCVLYH---AP 326
Query: 1054 GAESPMKLPLPDRFSRSSSPGPIFPLHANLTREGGWPPTHSPISVTLQGRYSG 1212
AE P+ PL D S L ANL+ GW P HSP V QGRYSG
Sbjct: 327 QAEQPLHWPLWDLSSEMLFSDSNLLLQANLSESEGWQPNHSPSLVIFQGRYSG 379
>ref|NP_084356.1| cyclic AMP-responsive element-binding protein 3-like protein 4 [Mus
musculus].
Length = 370
Score = 92.8 bits (229), Expect = 6e-19
Identities = 59/157 (37%), Positives = 89/157 (56%), Gaps = 8/157 (5%)
Frame = +1
Query: 550 RMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQNX 729
+ EE++L+++RRKIRNK+SAQ+SRR+KK Y+ LESRV S QN +LQ KVQ LE QN
Sbjct: 188 KAEERILKKIRRKIRNKQSAQDSRRRKKEYLDGLESRVAACSEQNQKLQRKVQELERQNI 247
Query: 730 XXXXXXXXXXXMVIQTANKASSSSTCIXXXXXXXXXXXXPAMY----SSDTRGSPPAEHG 897
+ QT+++A+ +STC+ P+ S+ R HG
Sbjct: 248 FLMEQVRQLQKLTAQTSSRAAQTSTCVLILLFSLALIILPSFSPFQGQSEARPEDYQLHG 307
Query: 898 VLSRQLRALPSEDVPQR-DLPALQS---EVPQDSSTH 996
V+SR + L E+V + + P L+S E+P+ +T+
Sbjct: 308 VISRNI--LTHENVTENLESPVLKSKLEELPEAPTTN 342
>ref|NP_663340.1| cyclic AMP-responsive element-binding protein 3-like protein 3 [Mus
musculus].
Length = 479
Score = 83.6 bits (205), Expect = 4e-16
Identities = 42/87 (48%), Positives = 60/87 (68%)
Frame = +1
Query: 550 RMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQNX 729
+ EE+VL+++RRKIRNK+SAQESR+KKK Y+ LE+R+ +AQN ELQ KV LE+QN
Sbjct: 234 KYEERVLKKIRRKIRNKQSAQESRKKKKEYIDGLENRMSACTAQNQELQRKVLHLEKQNL 293
Query: 730 XXXXXXXXXXXMVIQTANKASSSSTCI 810
+V+Q+ +K + + TCI
Sbjct: 294 SLLEQLKHLQALVVQSTSKPAHAGTCI 320
>ref|XP_919654.3| PREDICTED: cyclic AMP-responsive element-binding protein 3-like
protein 2-like [Mus musculus].
Length = 460
Score = 70.1 bits (170), Expect = 4e-12
Identities = 34/59 (57%), Positives = 46/59 (77%)
Frame = +1
Query: 550 RMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQN 726
+ EE+ L+++RRKI+NK SAQESRRKKK Y+ SLE +V S +NLEL+ KV++LE N
Sbjct: 228 KSEEKALKKIRRKIKNKISAQESRRKKKEYMDSLEKKVESCSTENLELRKKVEVLENTN 286
>ref|NP_848776.2| cyclic AMP-responsive element-binding protein 3-like protein 2 [Mus
musculus].
Length = 521
Score = 70.1 bits (170), Expect = 4e-12
Identities = 34/59 (57%), Positives = 46/59 (77%)
Frame = +1
Query: 550 RMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQN 726
+ EE+ L+++RRKI+NK SAQESRRKKK Y+ SLE +V S +NLEL+ KV++LE N
Sbjct: 289 KSEEKALKKIRRKIKNKISAQESRRKKKEYMDSLEKKVESCSTENLELRKKVEVLENTN 347
>ref|NP_036087.2| cyclic AMP-responsive element-binding protein 3-like protein 1 [Mus
musculus].
Length = 520
Score = 67.8 bits (164), Expect = 2e-11
Identities = 35/59 (59%), Positives = 44/59 (74%)
Frame = +1
Query: 550 RMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQN 726
+ EE+ L+RVRRKI+NK SAQESRRKKK YV LE +V Y+++N EL KV+ LE N
Sbjct: 285 KAEEKALKRVRRKIKNKISAQESRRKKKEYVECLEKKVETYTSENNELWKKVETLETAN 343
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 52,187,105
Number of extensions: 1551411
Number of successful extensions: 7385
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 7315
Number of HSP's successfully gapped: 6
Length of query: 500
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 394
Effective length of database: 12,433,743
Effective search space: 4898894742
Effective search space used: 4898894742
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0158_D08
(1501 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001116692.1| cyclic AMP-responsive element-binding protei... 560 e-160
Alignment gi|XP_003353616.1| PREDICTED: hypothetical protein LOC100627545... 130 3e-30
Alignment gi|NP_001116574.1| cyclic AMP-responsive element-binding protei... 94 2e-19
Alignment gi|XP_003123109.1| PREDICTED: cyclic AMP-responsive element-bin... 85 1e-16
Alignment gi|XP_003123108.1| PREDICTED: cyclic AMP-responsive element-bin... 85 1e-16
Alignment gi|XP_003134683.1| PREDICTED: cyclic AMP-responsive element-bin... 70 3e-12
Alignment gi|XP_003122877.1| PREDICTED: cyclic AMP-responsive element-bin... 67 3e-11
Alignment gi|XP_003353933.1| PREDICTED: cyclic AMP-responsive element-bin... 67 3e-11
>ref|NP_001116692.1| cyclic AMP-responsive element-binding protein 3 [Sus scrofa].
Length = 365
Score = 560 bits (1443), Expect = e-160
Identities = 287/341 (84%), Positives = 289/341 (84%)
Frame = +1
Query: 190 AARDEALEAPLDWELPLSEALSDWDVEDFLSCLSSPPASLTDFSHSDPYLVHHDHTYSLS 369
AA DEALEAPLDWELPLSEALSDWDVEDFLSCLSSPPASLTDFSHSDPYLVHHDHTYSLS
Sbjct: 25 AAPDEALEAPLDWELPLSEALSDWDVEDFLSCLSSPPASLTDFSHSDPYLVHHDHTYSLS 84
Query: 370 QEYVSIDLDNEDYEKEGARMTSLRVEAPAEQEIGXXXXXXXXXXXXXXXXXXXXXXXXXX 549
QEYVSIDLDNEDYEKEGA+MTSLRVEAPAEQEIG
Sbjct: 85 QEYVSIDLDNEDYEKEGAQMTSLRVEAPAEQEIGELVLTEEEKRLLEKEGLTLPGTLPLT 144
Query: 550 RMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQNX 729
+MEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQN
Sbjct: 145 KMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQNL 204
Query: 730 XXXXXXXXXXXMVIQTANKASSSSTCIXXXXXXXXXXXXPAMYSSDTRGSPPAEHGVLSR 909
MVIQTANKASSSSTCI PAMYSSDTRGSPPAEHGVLSR
Sbjct: 205 SLLDQLRRLQSMVIQTANKASSSSTCILVLLFSFCLLFVPAMYSSDTRGSPPAEHGVLSR 264
Query: 910 QLRALPSEDVPQRDLPALQSEVPQDSSTHELQAPGNSCCLFHHMAWAPGAESPMKLPLPD 1089
QLRALPSEDVPQRDLPALQSEVPQDSSTHELQAPGNSCCLFHHMAWAPGAESPMKLPLPD
Sbjct: 265 QLRALPSEDVPQRDLPALQSEVPQDSSTHELQAPGNSCCLFHHMAWAPGAESPMKLPLPD 324
Query: 1090 RFSRSSSPGPIFPLHANLTREGGWPPTHSPISVTLQGRYSG 1212
RFSRSSSPGPIFPLHANLTREGGW PTHSPISVTLQGRYSG
Sbjct: 325 RFSRSSSPGPIFPLHANLTREGGWLPTHSPISVTLQGRYSG 365
>ref|XP_003353616.1| PREDICTED: hypothetical protein LOC100627545 [Sus scrofa].
Length = 59
Score = 130 bits (326), Expect = 3e-30
Identities = 59/59 (100%), Positives = 59/59 (100%)
Frame = +2
Query: 893 MECCPASFVPSPARTFPSGTCLHCSQRYHRTAQPTSSRLLATLAACSTTWLGLLGQNRP 1069
MECCPASFVPSPARTFPSGTCLHCSQRYHRTAQPTSSRLLATLAACSTTWLGLLGQNRP
Sbjct: 1 MECCPASFVPSPARTFPSGTCLHCSQRYHRTAQPTSSRLLATLAACSTTWLGLLGQNRP 59
>ref|NP_001116574.1| cyclic AMP-responsive element-binding protein 3-like protein 4 [Sus
scrofa].
Length = 395
Score = 94.0 bits (232), Expect = 2e-19
Identities = 47/87 (54%), Positives = 62/87 (71%)
Frame = +1
Query: 550 RMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQNX 729
+ EE+VL++VRRKIRNK+SAQ+SRR+KK Y+ LESRV SAQN ELQ KVQ LE N
Sbjct: 212 KAEERVLKKVRRKIRNKQSAQDSRRRKKEYIDGLESRVAACSAQNQELQKKVQELERHNL 271
Query: 730 XXXXXXXXXXXMVIQTANKASSSSTCI 810
+++QT+NKA+ +STC+
Sbjct: 272 SLVTQLRQLQMLIVQTSNKAAQTSTCV 298
>ref|XP_003123109.1| PREDICTED: cyclic AMP-responsive element-binding protein 3-like
protein 3-like isoform 2 [Sus scrofa].
Length = 450
Score = 84.7 bits (208), Expect = 1e-16
Identities = 55/161 (34%), Positives = 89/161 (55%), Gaps = 5/161 (3%)
Frame = +1
Query: 550 RMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQNX 729
+ EE+VL+++RRKIRNK+SAQESR+KKK Y+ LE+R+ +AQN ELQ KV LE+QN
Sbjct: 227 KYEERVLKKIRRKIRNKQSAQESRKKKKEYIDGLETRMSACTAQNQELQRKVLHLEKQNL 286
Query: 730 XXXXXXXXXXXMVIQTANKASSSSTCIXXXXXXXXXXXXPAM--YSSDTRGSPP--AEHG 897
+V+Q+ +K++ + TCI P++ ++S+ +P
Sbjct: 287 SLLEQLKKLQAIVVQSTSKSAQTGTCIAVLLFSFALIVLPSISPFASNKTENPGDFTPVR 346
Query: 898 VLSRQLRALPSEDVPQRDLPALQSEVPQ-DSSTHELQAPGN 1017
V SR L + V P ++ P+ ++ T + +PG+
Sbjct: 347 VFSRTLHNDAASRVAPNTAPGSEAPGPRPEAGTLQEGSPGS 387
>ref|XP_003123108.1| PREDICTED: cyclic AMP-responsive element-binding protein 3-like
protein 3-like isoform 1 [Sus scrofa].
Length = 444
Score = 84.7 bits (208), Expect = 1e-16
Identities = 55/161 (34%), Positives = 89/161 (55%), Gaps = 5/161 (3%)
Frame = +1
Query: 550 RMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQNX 729
+ EE+VL+++RRKIRNK+SAQESR+KKK Y+ LE+R+ +AQN ELQ KV LE+QN
Sbjct: 221 KYEERVLKKIRRKIRNKQSAQESRKKKKEYIDGLETRMSACTAQNQELQRKVLHLEKQNL 280
Query: 730 XXXXXXXXXXXMVIQTANKASSSSTCIXXXXXXXXXXXXPAM--YSSDTRGSPP--AEHG 897
+V+Q+ +K++ + TCI P++ ++S+ +P
Sbjct: 281 SLLEQLKKLQAIVVQSTSKSAQTGTCIAVLLFSFALIVLPSISPFASNKTENPGDFTPVR 340
Query: 898 VLSRQLRALPSEDVPQRDLPALQSEVPQ-DSSTHELQAPGN 1017
V SR L + V P ++ P+ ++ T + +PG+
Sbjct: 341 VFSRTLHNDAASRVAPNTAPGSEAPGPRPEAGTLQEGSPGS 381
>ref|XP_003134683.1| PREDICTED: cyclic AMP-responsive element-binding protein 3-like
protein 2 [Sus scrofa].
Length = 520
Score = 70.1 bits (170), Expect = 3e-12
Identities = 34/59 (57%), Positives = 46/59 (77%)
Frame = +1
Query: 550 RMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQN 726
+ EE+ L+++RRKI+NK SAQESRRKKK Y+ SLE +V S +NLEL+ KV++LE N
Sbjct: 289 KSEEKALKKIRRKIKNKISAQESRRKKKEYMDSLEKKVESCSTENLELRKKVEVLENTN 347
>ref|XP_003122877.1| PREDICTED: cyclic AMP-responsive element-binding protein 3-like
protein 1 [Sus scrofa].
Length = 520
Score = 66.6 bits (161), Expect = 3e-11
Identities = 34/59 (57%), Positives = 44/59 (74%)
Frame = +1
Query: 550 RMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQN 726
+ EE+ L+RVRRKI+NK SAQESRRKKK YV LE +V ++++N EL KV+ LE N
Sbjct: 285 KAEEKALKRVRRKIKNKISAQESRRKKKEYVECLEKKVETFTSENNELWKKVETLENAN 343
>ref|XP_003353933.1| PREDICTED: cyclic AMP-responsive element-binding protein 3-like
protein 1-like [Sus scrofa].
Length = 446
Score = 66.6 bits (161), Expect = 3e-11
Identities = 34/59 (57%), Positives = 44/59 (74%)
Frame = +1
Query: 550 RMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQN 726
+ EE+ L+RVRRKI+NK SAQESRRKKK YV LE +V ++++N EL KV+ LE N
Sbjct: 273 KAEEKALKRVRRKIKNKISAQESRRKKKEYVECLEKKVETFTSENNELWKKVETLENAN 331
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 39,141,140
Number of extensions: 1203968
Number of successful extensions: 5960
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 5936
Number of HSP's successfully gapped: 8
Length of query: 500
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 397
Effective length of database: 8,779,541
Effective search space: 3485477777
Effective search space used: 3485477777
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0158_D08
(1501 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 1160 0.0
>Sscrofa_Chr01
|| Length = 315321322
Score = 1160 bits (585), Expect = 0.0
Identities = 588/589 (99%)
Strand = Plus / Plus
Query: 897 agtgttgtcccgccagcttcgtgccctccccagcgaggacgttccccagcgggacctgcc 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264180972 agtgttgtcccgccagcttcgtgccctccccagcgaggacgttccccagcgggacctgcc 264181031
Query: 957 tgcactgcagtcagaggtaccacaggacagctcaacccacgagctccaggctcctggcaa 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264181032 tgcactgcagtcagaggtaccacaggacagctcaacccacgagctccaggctcctggcaa 264181091
Query: 1017 ctcttgctgcctgttccaccacatggcttgggctcctggggcagaatcgcccatgaagct 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264181092 ctcttgctgcctgttccaccacatggcttgggctcctggggcagaatcgcccatgaagct 264181151
Query: 1077 gccactgcccgaccgcttctcaaggtcttctagcccaggtcccatcttccccctgcatgc 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264181152 gccactgcccgaccgcttctcaaggtcttctagcccaggtcccatcttccccctgcatgc 264181211
Query: 1137 aaatctcacaagagagggaggatggccccctacccacagccccatatctgttaccttgca 1196
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 264181212 aaatctcacaagagagggaggatggctccctacccacagccccatatctgttaccttgca 264181271
Query: 1197 gggcaggtactcaggctagatgtgagaatgcagggggcctcagccagagcctggtgcccc 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264181272 gggcaggtactcaggctagatgtgagaatgcagggggcctcagccagagcctggtgcccc 264181331
Query: 1257 cagtctgtgttcaaaggaaaaggaatgggagagggtgagcctcaggtcctgtcccctgtc 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264181332 cagtctgtgttcaaaggaaaaggaatgggagagggtgagcctcaggtcctgtcccctgtc 264181391
Query: 1317 aggaagcctgagggcacaaacacaccacacttactggctttctggggttttatttgcacc 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264181392 aggaagcctgagggcacaaacacaccacacttactggctttctggggttttatttgcacc 264181451
Query: 1377 catgtatgtctgttgttccattaaggggcctgggagagtccactgacttccttgaacatt 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264181452 catgtatgtctgttgttccattaaggggcctgggagagtccactgacttccttgaacatt 264181511
Query: 1437 tcatgcaatgaggggatggggtgaagaaagaaataaataagtgattctg 1485
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264181512 tcatgcaatgaggggatggggtgaagaaagaaataaataagtgattctg 264181560
Score = 490 bits (247), Expect = e-135
Identities = 247/247 (100%)
Strand = Plus / Plus
Query: 1 gcttgcggagcccataggtgtggcccactgacgatcggtgggagtcgtgcgtggggttgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264176184 gcttgcggagcccataggtgtggcccactgacgatcggtgggagtcgtgcgtggggttgg 264176243
Query: 61 gagttgactccgggtgtacttctgtgtttctgctcatcctttccgtagatgtctcatatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264176244 gagttgactccgggtgtacttctgtgtttctgctcatcctttccgtagatgtctcatatg 264176303
Query: 121 gagctggggttggactcgggtgacgatgacttgctgggcttcctgttagaggaaagcgga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264176304 gagctggggttggactcgggtgacgatgacttgctgggcttcctgttagaggaaagcgga 264176363
Query: 181 ggtctgggggcggcgcgggacgaagccttggaggcgcccctggattgggagctaccactt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264176364 ggtctgggggcggcgcgggacgaagccttggaggcgcccctggattgggagctaccactt 264176423
Query: 241 tccgagg 247
|||||||
Sbjct: 264176424 tccgagg 264176430
Score = 297 bits (150), Expect = 9e-78
Identities = 150/150 (100%)
Strand = Plus / Plus
Query: 245 aggcattgagcgattgggacgtagaggatttcctgagctgcctgtcgagtcccccagcat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264176533 aggcattgagcgattgggacgtagaggatttcctgagctgcctgtcgagtcccccagcat 264176592
Query: 305 cgttgaccgattttagccactctgacccctatcttgtccaccatgatcacacctattccc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264176593 cgttgaccgattttagccactctgacccctatcttgtccaccatgatcacacctattccc 264176652
Query: 365 tgtcacaggagtatgtctccatagatctag 394
||||||||||||||||||||||||||||||
Sbjct: 264176653 tgtcacaggagtatgtctccatagatctag 264176682
Score = 192 bits (97), Expect = 4e-46
Identities = 106/109 (97%)
Strand = Plus / Plus
Query: 552 gatggaggaacaagttctgagacgagtgcgaaggaagattcgaaacaaaaagtctgctca 611
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 264179558 gatggaggaacaagttctgcttcgagtgcgaaggaagattcgaaacaaaaagtctgctca 264179617
Query: 612 agagagccgcaggaagaagaaggtgtatgtggggagtttagagagcagg 660
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264179618 agagagccgcaggaagaagaaggtgtatgtggggagtttagagagcagg 264179666
Score = 180 bits (91), Expect = 1e-42
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 460 caggagattggtgagctgatactgacggaggaggagaagaggcttttggagaaggagggg 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264176940 caggagattggtgagctgatactgacggaggaggagaagaggcttttggagaaggagggg 264176999
Query: 520 cttactctgcccgggacacttcctctcacta 550
|||||||||||||||||||||||||||||||
Sbjct: 264177000 cttactctgcccgggacacttcctctcacta 264177030
Score = 172 bits (87), Expect = 4e-40
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 729 gtcccttttggatcagttgaggaggctgcagtccatggtgattcagacggcaaacaaagc 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264180623 gtcccttttggatcagttgaggaggctgcagtccatggtgattcagacggcaaacaaagc 264180682
Query: 789 cagcagcagcagcacctgcatcttggt 815
|||||||||||||||||||||||||||
Sbjct: 264180683 cagcagcagcagcacctgcatcttggt 264180709
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 813 ggtcctgctcttctccttctgtctcctcttcgtacctgccatgtactcctcggacacaag 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264180811 ggtcctgctcttctccttctgtctcctcttcgtacctgccatgtactcctcggacacaag 264180870
Query: 873 ggggagcccgccagccgagcatggag 898
||||||||||||||||||||||||||
Sbjct: 264180871 ggggagcccgccagccgagcatggag 264180896
Score = 147 bits (74), Expect = 2e-32
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 657 cagggtcctgaaatactcggcccagaatctggagctacagaacaaagtacagctcctgga 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264179776 cagggtcctgaaatactcggcccagaatctggagctacagaacaaagtacagctcctgga 264179835
Query: 717 ggagcagaatctgt 730
||||||||||||||
Sbjct: 264179836 ggagcagaatctgt 264179849
Score = 125 bits (63), Expect = 8e-26
Identities = 69/71 (97%)
Strand = Plus / Plus
Query: 393 agataatgaggattatgagaaggaaggggcccgaatgacttcactgcgtgtggaggcgcc 452
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 264176757 agataatgaggattatgagaaggaaggggcccaaatgacttccctgcgtgtggaggcgcc 264176816
Query: 453 cgcagagcagg 463
|||||||||||
Sbjct: 264176817 cgcagagcagg 264176827
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 44,289,400
Number of extensions: 373
Number of successful extensions: 373
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 373
Number of HSP's successfully gapped: 9
Length of query: 1501
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1480
Effective length of database: 2,808,413,156
Effective search space: 4156451470880
Effective search space used: 4156451470880
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)