Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0209_G10
(2691 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001020276.1| casein kinase I isoform alpha isoform 1 [Hom... 143 7e-34
Alignment gi|NP_001883.4| casein kinase I isoform alpha isoform 2 [Homo s... 143 7e-34
Alignment gi|NP_660204.2| casein kinase I isoform alpha-like [Homo sapien... 140 6e-33
Alignment gi|NP_620693.1| casein kinase I isoform delta isoform 2 [Homo s... 105 2e-22
Alignment gi|NP_001884.2| casein kinase I isoform delta isoform 1 [Homo s... 105 2e-22
Alignment gi|NP_689407.1| casein kinase I isoform epsilon [Homo sapiens]. 104 4e-22
Alignment gi|NP_001885.1| casein kinase I isoform epsilon [Homo sapiens]. 104 4e-22
Alignment gi|NP_071331.2| casein kinase I isoform gamma-1 [Homo sapiens]. 71 6e-12
Alignment gi|NP_001310.3| casein kinase I isoform gamma-2 [Homo sapiens]. 70 1e-11
Alignment gi|NP_001038188.1| casein kinase I isoform gamma-3 isoform 4 [H... 68 5e-11
>ref|NP_001020276.1| casein kinase I isoform alpha isoform 1 [Homo sapiens].
Length = 365
Score = 143 bits (361), Expect = 7e-34
Identities = 69/88 (78%), Positives = 69/88 (78%)
Frame = +3
Query: 3 SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF 182
SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF
Sbjct: 265 SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF 324
Query: 183 DWTMLXXXXXXXXXXXXXXXXXXXTPTG 266
DWTML TPTG
Sbjct: 325 DWTMLKQKAAQQAASSSGQGQQAQTPTG 352
>ref|NP_001883.4| casein kinase I isoform alpha isoform 2 [Homo sapiens].
Length = 337
Score = 143 bits (361), Expect = 7e-34
Identities = 69/88 (78%), Positives = 69/88 (78%)
Frame = +3
Query: 3 SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF 182
SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF
Sbjct: 237 SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF 296
Query: 183 DWTMLXXXXXXXXXXXXXXXXXXXTPTG 266
DWTML TPTG
Sbjct: 297 DWTMLKQKAAQQAASSSGQGQQAQTPTG 324
>ref|NP_660204.2| casein kinase I isoform alpha-like [Homo sapiens].
Length = 337
Score = 140 bits (353), Expect = 6e-33
Identities = 64/65 (98%), Positives = 64/65 (98%)
Frame = +3
Query: 3 SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF 182
SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEE PDYMYLRQLFRILFRTLNHQYDYTF
Sbjct: 237 SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEVPDYMYLRQLFRILFRTLNHQYDYTF 296
Query: 183 DWTML 197
DWTML
Sbjct: 297 DWTML 301
>ref|NP_620693.1| casein kinase I isoform delta isoform 2 [Homo sapiens].
Length = 409
Score = 105 bits (263), Expect = 2e-22
Identities = 46/65 (70%), Positives = 52/65 (80%)
Frame = +3
Query: 3 SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF 182
SEKKMSTP+EVLCKG+P+EFA YLN+CR LRF++ PDY YLRQLFR LF YDY F
Sbjct: 229 SEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVF 288
Query: 183 DWTML 197
DW ML
Sbjct: 289 DWNML 293
>ref|NP_001884.2| casein kinase I isoform delta isoform 1 [Homo sapiens].
Length = 415
Score = 105 bits (263), Expect = 2e-22
Identities = 46/65 (70%), Positives = 52/65 (80%)
Frame = +3
Query: 3 SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF 182
SEKKMSTP+EVLCKG+P+EFA YLN+CR LRF++ PDY YLRQLFR LF YDY F
Sbjct: 229 SEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVF 288
Query: 183 DWTML 197
DW ML
Sbjct: 289 DWNML 293
>ref|NP_689407.1| casein kinase I isoform epsilon [Homo sapiens].
Length = 416
Score = 104 bits (260), Expect = 4e-22
Identities = 45/65 (69%), Positives = 52/65 (80%)
Frame = +3
Query: 3 SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF 182
SEKKMSTP+EVLCKG+P+EF+ YLN+CR LRF++ PDY YLRQLFR LF YDY F
Sbjct: 229 SEKKMSTPIEVLCKGYPSEFSTYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVF 288
Query: 183 DWTML 197
DW ML
Sbjct: 289 DWNML 293
>ref|NP_001885.1| casein kinase I isoform epsilon [Homo sapiens].
Length = 416
Score = 104 bits (260), Expect = 4e-22
Identities = 45/65 (69%), Positives = 52/65 (80%)
Frame = +3
Query: 3 SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF 182
SEKKMSTP+EVLCKG+P+EF+ YLN+CR LRF++ PDY YLRQLFR LF YDY F
Sbjct: 229 SEKKMSTPIEVLCKGYPSEFSTYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVF 288
Query: 183 DWTML 197
DW ML
Sbjct: 289 DWNML 293
>ref|NP_071331.2| casein kinase I isoform gamma-1 [Homo sapiens].
Length = 422
Score = 70.9 bits (172), Expect = 6e-12
Identities = 31/61 (50%), Positives = 38/61 (62%)
Frame = +3
Query: 6 EKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTFD 185
+ K +TP+E LC+ FP E A YL Y R L F E PDY YLR LF LF + +DY +D
Sbjct: 268 DTKRNTPIEALCENFPEEMATYLRYVRRLDFFEKPDYEYLRTLFTDLFEKKGYTFDYAYD 327
Query: 186 W 188
W
Sbjct: 328 W 328
>ref|NP_001310.3| casein kinase I isoform gamma-2 [Homo sapiens].
Length = 415
Score = 70.1 bits (170), Expect = 1e-11
Identities = 32/61 (52%), Positives = 39/61 (63%)
Frame = +3
Query: 6 EKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTFD 185
+ K +TP+EVLC+ FP E A YL Y R L F E PDY YLR+LF LF +DY +D
Sbjct: 269 DTKRATPIEVLCENFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRSGFVFDYEYD 328
Query: 186 W 188
W
Sbjct: 329 W 329
>ref|NP_001038188.1| casein kinase I isoform gamma-3 isoform 4 [Homo sapiens].
Length = 455
Score = 67.8 bits (164), Expect = 5e-11
Identities = 32/61 (52%), Positives = 40/61 (65%)
Frame = +3
Query: 6 EKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTFD 185
+ K +TP+EVLC+ FP E A YL Y R L F E PDY YLR+LF LF + +DY +D
Sbjct: 266 DTKRATPIEVLCENFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRKGYMFDYEYD 324
Query: 186 W 188
W
Sbjct: 325 W 325
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 90,956,645
Number of extensions: 2078366
Number of successful extensions: 4972
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 4964
Number of HSP's successfully gapped: 13
Length of query: 897
Length of database: 18,297,164
Length adjustment: 112
Effective length of query: 785
Effective length of database: 14,605,196
Effective search space: 11465078860
Effective search space used: 11465078860
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0209_G10
(2691 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_867771.1| PREDICTED: similar to casein kinase 1, alpha 1 ... 145 2e-34
Alignment gi|XP_867676.1| PREDICTED: similar to casein kinase 1, alpha 1 ... 145 2e-34
Alignment gi|XP_853670.1| PREDICTED: similar to casein kinase 1, alpha 1 ... 143 7e-34
Alignment gi|XP_867755.1| PREDICTED: similar to Casein kinase I, alpha is... 143 7e-34
Alignment gi|XP_867745.1| PREDICTED: similar to Casein kinase I, alpha is... 143 7e-34
Alignment gi|XP_867736.1| PREDICTED: similar to Casein kinase I, alpha is... 143 7e-34
Alignment gi|XP_867724.1| PREDICTED: similar to Casein kinase I, alpha is... 143 7e-34
Alignment gi|XP_867715.1| PREDICTED: similar to Casein kinase I, alpha is... 143 7e-34
Alignment gi|XP_867705.1| PREDICTED: similar to Casein kinase I, alpha is... 143 7e-34
Alignment gi|XP_867695.1| PREDICTED: similar to Casein kinase I, alpha is... 143 7e-34
>ref|XP_867771.1| PREDICTED: similar to casein kinase 1, alpha 1 isoform 15 [Canis
familiaris].
Length = 325
Score = 145 bits (367), Expect = 2e-34
Identities = 70/89 (78%), Positives = 70/89 (78%)
Frame = +3
Query: 3 SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF 182
SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF
Sbjct: 237 SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF 296
Query: 183 DWTMLXXXXXXXXXXXXXXXXXXXTPTGF 269
DWTML TPTGF
Sbjct: 297 DWTMLKQKAAQQAASSSGQGQQAQTPTGF 325
>ref|XP_867676.1| PREDICTED: similar to casein kinase 1, alpha 1 isoform 6 [Canis
familiaris].
Length = 236
Score = 145 bits (367), Expect = 2e-34
Identities = 70/89 (78%), Positives = 70/89 (78%)
Frame = +3
Query: 3 SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF 182
SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF
Sbjct: 148 SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF 207
Query: 183 DWTMLXXXXXXXXXXXXXXXXXXXTPTGF 269
DWTML TPTGF
Sbjct: 208 DWTMLKQKAAQQAASSSGQGQQAQTPTGF 236
>ref|XP_853670.1| PREDICTED: similar to casein kinase 1, alpha 1 isoform 1 isoform 2
[Canis familiaris].
Length = 365
Score = 143 bits (361), Expect = 7e-34
Identities = 69/88 (78%), Positives = 69/88 (78%)
Frame = +3
Query: 3 SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF 182
SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF
Sbjct: 265 SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF 324
Query: 183 DWTMLXXXXXXXXXXXXXXXXXXXTPTG 266
DWTML TPTG
Sbjct: 325 DWTMLKQKAAQQAASSSGQGQQAQTPTG 352
>ref|XP_867755.1| PREDICTED: similar to Casein kinase I, alpha isoform (CKI-alpha)
(CK1) isoform 14 [Canis familiaris].
Length = 248
Score = 143 bits (361), Expect = 7e-34
Identities = 69/88 (78%), Positives = 69/88 (78%)
Frame = +3
Query: 3 SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF 182
SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF
Sbjct: 148 SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF 207
Query: 183 DWTMLXXXXXXXXXXXXXXXXXXXTPTG 266
DWTML TPTG
Sbjct: 208 DWTMLKQKAAQQAASSSGQGQQAQTPTG 235
>ref|XP_867745.1| PREDICTED: similar to Casein kinase I, alpha isoform (CKI-alpha)
(CK1) isoform 13 [Canis familiaris].
Length = 341
Score = 143 bits (361), Expect = 7e-34
Identities = 69/88 (78%), Positives = 69/88 (78%)
Frame = +3
Query: 3 SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF 182
SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF
Sbjct: 241 SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF 300
Query: 183 DWTMLXXXXXXXXXXXXXXXXXXXTPTG 266
DWTML TPTG
Sbjct: 301 DWTMLKQKAAQQAASSSGQGQQAQTPTG 328
>ref|XP_867736.1| PREDICTED: similar to Casein kinase I, alpha isoform (CKI-alpha)
(CK1) isoform 12 [Canis familiaris].
Length = 341
Score = 143 bits (361), Expect = 7e-34
Identities = 69/88 (78%), Positives = 69/88 (78%)
Frame = +3
Query: 3 SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF 182
SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF
Sbjct: 241 SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF 300
Query: 183 DWTMLXXXXXXXXXXXXXXXXXXXTPTG 266
DWTML TPTG
Sbjct: 301 DWTMLKQKAAQQAASSSGQGQQAQTPTG 328
>ref|XP_867724.1| PREDICTED: similar to Casein kinase I, alpha isoform (CKI-alpha)
(CK1) isoform 11 [Canis familiaris].
Length = 341
Score = 143 bits (361), Expect = 7e-34
Identities = 69/88 (78%), Positives = 69/88 (78%)
Frame = +3
Query: 3 SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF 182
SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF
Sbjct: 241 SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF 300
Query: 183 DWTMLXXXXXXXXXXXXXXXXXXXTPTG 266
DWTML TPTG
Sbjct: 301 DWTMLKQKAAQQAASSSGQGQQAQTPTG 328
>ref|XP_867715.1| PREDICTED: similar to Casein kinase I, alpha isoform (CKI-alpha)
(CK1) isoform 10 [Canis familiaris].
Length = 339
Score = 143 bits (361), Expect = 7e-34
Identities = 69/88 (78%), Positives = 69/88 (78%)
Frame = +3
Query: 3 SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF 182
SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF
Sbjct: 239 SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF 298
Query: 183 DWTMLXXXXXXXXXXXXXXXXXXXTPTG 266
DWTML TPTG
Sbjct: 299 DWTMLKQKAAQQAASSSGQGQQAQTPTG 326
>ref|XP_867705.1| PREDICTED: similar to Casein kinase I, alpha isoform (CKI-alpha)
(CK1) isoform 9 [Canis familiaris].
Length = 341
Score = 143 bits (361), Expect = 7e-34
Identities = 69/88 (78%), Positives = 69/88 (78%)
Frame = +3
Query: 3 SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF 182
SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF
Sbjct: 241 SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF 300
Query: 183 DWTMLXXXXXXXXXXXXXXXXXXXTPTG 266
DWTML TPTG
Sbjct: 301 DWTMLKQKAAQQAASSSGQGQQAQTPTG 328
>ref|XP_867695.1| PREDICTED: similar to Casein kinase I, alpha isoform (CKI-alpha)
(CK1) isoform 8 [Canis familiaris].
Length = 341
Score = 143 bits (361), Expect = 7e-34
Identities = 69/88 (78%), Positives = 69/88 (78%)
Frame = +3
Query: 3 SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF 182
SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF
Sbjct: 241 SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF 300
Query: 183 DWTMLXXXXXXXXXXXXXXXXXXXTPTG 266
DWTML TPTG
Sbjct: 301 DWTMLKQKAAQQAASSSGQGQQAQTPTG 328
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 92,077,954
Number of extensions: 2078414
Number of successful extensions: 4984
Number of sequences better than 1.0e-05: 41
Number of HSP's gapped: 4979
Number of HSP's successfully gapped: 41
Length of query: 897
Length of database: 18,874,504
Length adjustment: 112
Effective length of query: 785
Effective length of database: 15,140,872
Effective search space: 11885584520
Effective search space used: 11885584520
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0209_G10
(2691 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_777136.1| casein kinase I isoform alpha [Bos taurus]. 145 1e-34
Alignment gi|XP_002689948.1| PREDICTED: casein kinase I alpha-like [Bos t... 139 2e-32
Alignment gi|XP_002700117.1| PREDICTED: casein kinase I-like [Bos taurus]. 116 9e-26
Alignment gi|XP_001788962.1| PREDICTED: casein kinase I-like [Bos taurus]. 116 9e-26
Alignment gi|XP_002699872.1| PREDICTED: casein kinase I-like [Bos taurus]. 116 1e-25
Alignment gi|XP_002707254.1| PREDICTED: casein kinase I-like [Bos taurus]. 116 1e-25
Alignment gi|NP_001091628.1| casein kinase I isoform beta [Bos taurus]. 109 1e-23
Alignment gi|NP_001095550.1| casein kinase 1, delta [Bos taurus]. 105 2e-22
Alignment gi|NP_001071577.1| casein kinase 1 epsilon [Bos taurus]. 104 4e-22
Alignment gi|NP_001033235.1| casein kinase I isoform gamma-1 [Bos taurus]. 73 1e-12
>ref|NP_777136.1| casein kinase I isoform alpha [Bos taurus].
Length = 325
Score = 145 bits (367), Expect = 1e-34
Identities = 70/89 (78%), Positives = 70/89 (78%)
Frame = +3
Query: 3 SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF 182
SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF
Sbjct: 237 SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF 296
Query: 183 DWTMLXXXXXXXXXXXXXXXXXXXTPTGF 269
DWTML TPTGF
Sbjct: 297 DWTMLKQKAAQQAASSSGQGQQAQTPTGF 325
>ref|XP_002689948.1| PREDICTED: casein kinase I alpha-like [Bos taurus].
Length = 325
Score = 139 bits (349), Expect = 2e-32
Identities = 67/89 (75%), Positives = 67/89 (75%)
Frame = +3
Query: 3 SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF 182
SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLR LF ILFRTLNHQYDYT
Sbjct: 237 SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRHLFHILFRTLNHQYDYTS 296
Query: 183 DWTMLXXXXXXXXXXXXXXXXXXXTPTGF 269
DWTML TPTGF
Sbjct: 297 DWTMLKQKAAQQAASSSGQGQQAQTPTGF 325
>ref|XP_002700117.1| PREDICTED: casein kinase I-like [Bos taurus].
Length = 336
Score = 116 bits (291), Expect = 9e-26
Identities = 55/88 (62%), Positives = 61/88 (69%)
Frame = +3
Query: 3 SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF 182
SE KM+TPV+VLCKGFPAEFAMYL +CRGL FEEAPDY YLRQLF +LFR LN+QYDY F
Sbjct: 237 SEMKMTTPVDVLCKGFPAEFAMYLKHCRGLSFEEAPDYRYLRQLFHMLFRKLNYQYDYAF 296
Query: 183 DWTMLXXXXXXXXXXXXXXXXXXXTPTG 266
DW +L TPTG
Sbjct: 297 DWIVLKQKAEQQAASSSGEGQQAQTPTG 324
>ref|XP_001788962.1| PREDICTED: casein kinase I-like [Bos taurus].
Length = 336
Score = 116 bits (291), Expect = 9e-26
Identities = 55/88 (62%), Positives = 61/88 (69%)
Frame = +3
Query: 3 SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF 182
SE KM+TPV+VLCKGFPAEFAMYL +CRGL FEEAPDY YLRQLF +LFR LN+QYDY F
Sbjct: 237 SEMKMTTPVDVLCKGFPAEFAMYLKHCRGLSFEEAPDYRYLRQLFHMLFRKLNYQYDYAF 296
Query: 183 DWTMLXXXXXXXXXXXXXXXXXXXTPTG 266
DW +L TPTG
Sbjct: 297 DWIVLKQKAEQQAASSSGEGQQAQTPTG 324
>ref|XP_002699872.1| PREDICTED: casein kinase I-like [Bos taurus].
Length = 333
Score = 116 bits (290), Expect = 1e-25
Identities = 50/63 (79%), Positives = 55/63 (87%)
Frame = +3
Query: 6 EKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTFD 185
E KM+TP+E LC GFP+EFA YLNYCRGLRFEEAPDY YLRQLFR LFRTLN+QYDY FD
Sbjct: 238 ESKMATPIEALCNGFPSEFATYLNYCRGLRFEEAPDYTYLRQLFRSLFRTLNYQYDYAFD 297
Query: 186 WTM 194
W +
Sbjct: 298 WIL 300
>ref|XP_002707254.1| PREDICTED: casein kinase I-like [Bos taurus].
Length = 333
Score = 116 bits (290), Expect = 1e-25
Identities = 50/63 (79%), Positives = 55/63 (87%)
Frame = +3
Query: 6 EKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTFD 185
E KM+TP+E LC GFP+EFA YLNYCRGLRFEEAPDY YLRQLFR LFRTLN+QYDY FD
Sbjct: 238 ESKMATPIEALCNGFPSEFATYLNYCRGLRFEEAPDYTYLRQLFRSLFRTLNYQYDYAFD 297
Query: 186 WTM 194
W +
Sbjct: 298 WIL 300
>ref|NP_001091628.1| casein kinase I isoform beta [Bos taurus].
Length = 336
Score = 109 bits (272), Expect = 1e-23
Identities = 52/88 (59%), Positives = 59/88 (67%)
Frame = +3
Query: 3 SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF 182
SE KM+TPV+VLCKGFP EFAMYL YC L FEEAPDY YLRQLFR+LFR L++Q+DY F
Sbjct: 237 SEMKMTTPVDVLCKGFPIEFAMYLKYCLRLSFEEAPDYRYLRQLFRLLFRKLSYQHDYAF 296
Query: 183 DWTMLXXXXXXXXXXXXXXXXXXXTPTG 266
DW +L TPTG
Sbjct: 297 DWIVLKQKAEQQASSSSGEGQQAQTPTG 324
>ref|NP_001095550.1| casein kinase 1, delta [Bos taurus].
Length = 409
Score = 105 bits (263), Expect = 2e-22
Identities = 46/65 (70%), Positives = 52/65 (80%)
Frame = +3
Query: 3 SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF 182
SEKKMSTP+EVLCKG+P+EFA YLN+CR LRF++ PDY YLRQLFR LF YDY F
Sbjct: 229 SEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVF 288
Query: 183 DWTML 197
DW ML
Sbjct: 289 DWNML 293
>ref|NP_001071577.1| casein kinase 1 epsilon [Bos taurus].
Length = 466
Score = 104 bits (260), Expect = 4e-22
Identities = 45/65 (69%), Positives = 52/65 (80%)
Frame = +3
Query: 3 SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF 182
SEKKMSTP+EVLCKG+P+EF+ YLN+CR LRF++ PDY YLRQLFR LF YDY F
Sbjct: 229 SEKKMSTPIEVLCKGYPSEFSTYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVF 288
Query: 183 DWTML 197
DW ML
Sbjct: 289 DWNML 293
>ref|NP_001033235.1| casein kinase I isoform gamma-1 [Bos taurus].
Length = 437
Score = 72.8 bits (177), Expect = 1e-12
Identities = 33/61 (54%), Positives = 39/61 (63%)
Frame = +3
Query: 6 EKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTFD 185
+ K +TPVEVLC+ FP E A YL Y R L F E PDY YLR LF LF + +DY +D
Sbjct: 267 DTKRNTPVEVLCENFPEEMATYLRYVRRLDFFEKPDYEYLRTLFTDLFERKGYTFDYAYD 326
Query: 186 W 188
W
Sbjct: 327 W 327
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 88,678,900
Number of extensions: 2063002
Number of successful extensions: 5316
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 5313
Number of HSP's successfully gapped: 12
Length of query: 897
Length of database: 17,681,374
Length adjustment: 111
Effective length of query: 786
Effective length of database: 14,008,606
Effective search space: 11010764316
Effective search space used: 11010764316
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0209_G10
(2691 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_666199.1| casein kinase I isoform alpha [Mus musculus]. 145 1e-34
Alignment gi|NP_620690.1| casein kinase I isoform delta isoform 1 [Mus mu... 105 1e-22
Alignment gi|NP_082150.1| casein kinase I isoform delta isoform 2 [Mus mu... 105 1e-22
Alignment gi|NP_038795.3| casein kinase I isoform epsilon [Mus musculus]. 104 3e-22
Alignment gi|NP_690022.2| casein kinase I isoform gamma-3 [Mus musculus]. 72 2e-12
Alignment gi|NP_598763.1| casein kinase I isoform gamma-2 isoform 1 [Mus ... 71 4e-12
Alignment gi|NP_001153063.1| casein kinase I isoform gamma-2 isoform 2 [M... 71 4e-12
Alignment gi|NP_775277.2| casein kinase I isoform gamma-1 [Mus musculus]. 71 5e-12
>ref|NP_666199.1| casein kinase I isoform alpha [Mus musculus].
Length = 325
Score = 145 bits (367), Expect = 1e-34
Identities = 70/89 (78%), Positives = 70/89 (78%)
Frame = +3
Query: 3 SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF 182
SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF
Sbjct: 237 SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF 296
Query: 183 DWTMLXXXXXXXXXXXXXXXXXXXTPTGF 269
DWTML TPTGF
Sbjct: 297 DWTMLKQKAAQQAASSSGQGQQAQTPTGF 325
>ref|NP_620690.1| casein kinase I isoform delta isoform 1 [Mus musculus].
Length = 415
Score = 105 bits (263), Expect = 1e-22
Identities = 46/65 (70%), Positives = 52/65 (80%)
Frame = +3
Query: 3 SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF 182
SEKKMSTP+EVLCKG+P+EFA YLN+CR LRF++ PDY YLRQLFR LF YDY F
Sbjct: 229 SEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVF 288
Query: 183 DWTML 197
DW ML
Sbjct: 289 DWNML 293
>ref|NP_082150.1| casein kinase I isoform delta isoform 2 [Mus musculus].
Length = 409
Score = 105 bits (263), Expect = 1e-22
Identities = 46/65 (70%), Positives = 52/65 (80%)
Frame = +3
Query: 3 SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF 182
SEKKMSTP+EVLCKG+P+EFA YLN+CR LRF++ PDY YLRQLFR LF YDY F
Sbjct: 229 SEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVF 288
Query: 183 DWTML 197
DW ML
Sbjct: 289 DWNML 293
>ref|NP_038795.3| casein kinase I isoform epsilon [Mus musculus].
Length = 416
Score = 104 bits (260), Expect = 3e-22
Identities = 45/65 (69%), Positives = 52/65 (80%)
Frame = +3
Query: 3 SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF 182
SEKKMSTP+EVLCKG+P+EF+ YLN+CR LRF++ PDY YLRQLFR LF YDY F
Sbjct: 229 SEKKMSTPIEVLCKGYPSEFSTYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVF 288
Query: 183 DWTML 197
DW ML
Sbjct: 289 DWNML 293
>ref|NP_690022.2| casein kinase I isoform gamma-3 [Mus musculus].
Length = 424
Score = 72.0 bits (175), Expect = 2e-12
Identities = 32/61 (52%), Positives = 40/61 (65%)
Frame = +3
Query: 6 EKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTFD 185
+ K +TP+EVLC+ FP E A YL Y R L F E PDY YLR+LF LF + +DY +D
Sbjct: 266 DTKRATPIEVLCENFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRKGYMFDYEYD 325
Query: 186 W 188
W
Sbjct: 326 W 326
>ref|NP_598763.1| casein kinase I isoform gamma-2 isoform 1 [Mus musculus].
Length = 442
Score = 71.2 bits (173), Expect = 4e-12
Identities = 32/61 (52%), Positives = 40/61 (65%)
Frame = +3
Query: 6 EKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTFD 185
+ K +TP+EVLC+ FP E A YL Y R L F E PDY YLR+LF LF + +DY +D
Sbjct: 296 DTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRSGYVFDYEYD 355
Query: 186 W 188
W
Sbjct: 356 W 356
>ref|NP_001153063.1| casein kinase I isoform gamma-2 isoform 2 [Mus musculus].
Length = 415
Score = 71.2 bits (173), Expect = 4e-12
Identities = 32/61 (52%), Positives = 40/61 (65%)
Frame = +3
Query: 6 EKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTFD 185
+ K +TP+EVLC+ FP E A YL Y R L F E PDY YLR+LF LF + +DY +D
Sbjct: 269 DTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRSGYVFDYEYD 328
Query: 186 W 188
W
Sbjct: 329 W 329
>ref|NP_775277.2| casein kinase I isoform gamma-1 [Mus musculus].
Length = 459
Score = 70.9 bits (172), Expect = 5e-12
Identities = 31/61 (50%), Positives = 38/61 (62%)
Frame = +3
Query: 6 EKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTFD 185
+ K +TP+E LC+ FP E A YL Y R L F E PDY YLR LF LF + +DY +D
Sbjct: 268 DTKRNTPIEALCENFPEEMATYLRYVRRLDFFEKPDYEYLRTLFTDLFERKGYTFDYAYD 327
Query: 186 W 188
W
Sbjct: 328 W 328
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 78,220,850
Number of extensions: 1800912
Number of successful extensions: 4416
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 4414
Number of HSP's successfully gapped: 8
Length of query: 897
Length of database: 15,617,559
Length adjustment: 110
Effective length of query: 787
Effective length of database: 12,313,599
Effective search space: 9690802413
Effective search space used: 9690802413
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0209_G10
(2691 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003354399.1| PREDICTED: casein kinase I isoform alpha [Su... 143 4e-34
Alignment gi|XP_003124136.1| PREDICTED: casein kinase I isoform alpha iso... 143 4e-34
Alignment gi|XP_003355386.1| PREDICTED: casein kinase I isoform epsilon i... 104 2e-22
Alignment gi|XP_003126072.1| PREDICTED: casein kinase I isoform epsilon i... 104 2e-22
Alignment gi|XP_003357975.1| PREDICTED: hypothetical protein LOC100625051... 96 8e-20
Alignment gi|XP_003123926.2| PREDICTED: casein kinase I isoform gamma-3-l... 72 2e-12
Alignment gi|XP_001927058.3| PREDICTED: casein kinase I isoform gamma-1-l... 71 4e-12
Alignment gi|XP_003123049.1| PREDICTED: casein kinase I isoform gamma-2 [... 70 6e-12
>ref|XP_003354399.1| PREDICTED: casein kinase I isoform alpha [Sus scrofa].
Length = 364
Score = 143 bits (361), Expect = 4e-34
Identities = 69/88 (78%), Positives = 69/88 (78%)
Frame = +3
Query: 3 SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF 182
SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF
Sbjct: 265 SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF 324
Query: 183 DWTMLXXXXXXXXXXXXXXXXXXXTPTG 266
DWTML TPTG
Sbjct: 325 DWTMLKQKAAQQAASSSGQGQQAQTPTG 352
>ref|XP_003124136.1| PREDICTED: casein kinase I isoform alpha isoform 1 [Sus scrofa].
Length = 337
Score = 143 bits (361), Expect = 4e-34
Identities = 69/88 (78%), Positives = 69/88 (78%)
Frame = +3
Query: 3 SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF 182
SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF
Sbjct: 237 SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF 296
Query: 183 DWTMLXXXXXXXXXXXXXXXXXXXTPTG 266
DWTML TPTG
Sbjct: 297 DWTMLKQKAAQQAASSSGQGQQAQTPTG 324
>ref|XP_003355386.1| PREDICTED: casein kinase I isoform epsilon isoform 2 [Sus scrofa].
Length = 416
Score = 104 bits (260), Expect = 2e-22
Identities = 45/65 (69%), Positives = 52/65 (80%)
Frame = +3
Query: 3 SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF 182
SEKKMSTP+EVLCKG+P+EF+ YLN+CR LRF++ PDY YLRQLFR LF YDY F
Sbjct: 229 SEKKMSTPIEVLCKGYPSEFSTYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVF 288
Query: 183 DWTML 197
DW ML
Sbjct: 289 DWNML 293
>ref|XP_003126072.1| PREDICTED: casein kinase I isoform epsilon isoform 1 [Sus scrofa].
Length = 416
Score = 104 bits (260), Expect = 2e-22
Identities = 45/65 (69%), Positives = 52/65 (80%)
Frame = +3
Query: 3 SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF 182
SEKKMSTP+EVLCKG+P+EF+ YLN+CR LRF++ PDY YLRQLFR LF YDY F
Sbjct: 229 SEKKMSTPIEVLCKGYPSEFSTYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVF 288
Query: 183 DWTML 197
DW ML
Sbjct: 289 DWNML 293
>ref|XP_003357975.1| PREDICTED: hypothetical protein LOC100625051 [Sus scrofa].
Length = 620
Score = 96.3 bits (238), Expect = 8e-20
Identities = 44/65 (67%), Positives = 50/65 (76%)
Frame = +3
Query: 3 SEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTF 182
SEK+MSTP+EVLCK P+EFA YLN+CR LRF++ PDY YLRQLFR LF YDY F
Sbjct: 202 SEKEMSTPIEVLCK-LPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVF 260
Query: 183 DWTML 197
DW ML
Sbjct: 261 DWNML 265
>ref|XP_003123926.2| PREDICTED: casein kinase I isoform gamma-3-like [Sus scrofa].
Length = 311
Score = 72.0 bits (175), Expect = 2e-12
Identities = 32/61 (52%), Positives = 40/61 (65%)
Frame = +3
Query: 6 EKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTFD 185
+ K +TP+EVLC+ FP E A YL Y R L F E PDY YLR+LF LF + +DY +D
Sbjct: 153 DTKRATPIEVLCENFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRKGYMFDYEYD 212
Query: 186 W 188
W
Sbjct: 213 W 213
>ref|XP_001927058.3| PREDICTED: casein kinase I isoform gamma-1-like [Sus scrofa].
Length = 494
Score = 70.9 bits (172), Expect = 4e-12
Identities = 31/61 (50%), Positives = 38/61 (62%)
Frame = +3
Query: 6 EKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTFD 185
+ K +TP+E LC+ FP E A YL Y R L F E PDY YLR LF LF + +DY +D
Sbjct: 296 DTKRNTPIEALCENFPEEMATYLRYVRRLDFFEKPDYEYLRTLFTDLFERKGYAFDYAYD 355
Query: 186 W 188
W
Sbjct: 356 W 356
>ref|XP_003123049.1| PREDICTED: casein kinase I isoform gamma-2 [Sus scrofa].
Length = 409
Score = 70.1 bits (170), Expect = 6e-12
Identities = 32/61 (52%), Positives = 39/61 (63%)
Frame = +3
Query: 6 EKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTFD 185
+ K +TP+EVLC+ FP E A YL Y R L F E PDY YLR+LF LF +DY +D
Sbjct: 263 DTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRSGFVFDYEYD 322
Query: 186 W 188
W
Sbjct: 323 W 323
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 57,033,191
Number of extensions: 1347762
Number of successful extensions: 3418
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 3414
Number of HSP's successfully gapped: 8
Length of query: 897
Length of database: 11,343,932
Length adjustment: 108
Effective length of query: 789
Effective length of database: 8,655,056
Effective search space: 6828839184
Effective search space used: 6828839184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0209_G10
(2691 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 2734 0.0
Sscrofa_Chr17 1360 0.0
Sscrofa_Chr06 504 e-139
gb|JH118612.1| Sus scrofa unplaced genomic scaffold ChrUScaf1273 496 e-137
Sscrofa_Chr01 88 3e-14
Sscrofa_Chr09 86 1e-13
>Sscrofa_Chr02
|| Length = 162569375
Score = 2734 bits (1379), Expect = 0.0
Identities = 1501/1561 (96%)
Strand = Plus / Minus
Query: 1107 acaagttcattaaaaactaaaaactgtttctgtaaggaaatgagannnnnnnnnnnnnnn 1166
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157380406 acaagttcattaaaaactaaaaactgtttctgtaaggaaatgagatttttttaaaaacaa 157380347
Query: 1167 nnnnntgccttgctgactcactatgaaatcaaaatctccccaatttttacgagactattt 1226
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157380346 aaaaatgccttgctgactcactatgaaatcaaaatctccccaatttttacgagactattt 157380287
Query: 1227 caagccatttgttatgtaattatcctttgcaaatcattttagatttagtacgaggacttc 1286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157380286 caagccatttgttatgtaattatcctttgcaaatcattttagatttagtacgaggacttc 157380227
Query: 1287 tcaaatnnnnnnnnnnnnnnnnnnnnnncccttgaagcgaaaggcattcttaccattttc 1346
|||||| ||||||||||||||||||||||||||||||||
Sbjct: 157380226 tcaaatgtttttatttaaaaatttttttcccttgaagcgaaaggcattcttaccattttc 157380167
Query: 1347 nnnnnnnaatgacttgcaggcgcaatacctcgtgctgcagccgcaagggccaggacttgg 1406
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157380166 tttttttaatgacttgcaggcgcaatacctcgtgctgcagccgcaagggccaggacttgg 157380107
Query: 1407 tattgtaactcctgcagcctcagacgaacagctggactgattttgaatgagaatgaaagc 1466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157380106 tattgtaactcctgcagcctcagacgaacagctggactgattttgaatgagaatgaaagc 157380047
Query: 1467 gttaaagggtttaactacaaaatgaagcttttctttaaattccttgctaattggatctga 1526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157380046 gttaaagggtttaactacaaaatgaagcttttctttaaattccttgctaattggatctga 157379987
Query: 1527 ggaggttgactccgaaactttggaaaagcatcttacctaccctgtgaggttctgggattg 1586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157379986 ggaggttgactccgaaactttggaaaagcatcttacctaccctgtgaggttctgggattg 157379927
Query: 1587 ccagccctccctggctgcacttcgtctcaatccttatatgtggctcttttctctttctga 1646
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 157379926 ccagccctccctggctgcacttcgtctcaatcctaatatgtggctcttttctctttctga 157379867
Query: 1647 cccaagaaaaagaaaagctaagcaattctttagtgtaatttcttcatttatagcatgtcc 1706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157379866 cccaagaaaaagaaaagctaagcaattctttagtgtaatttcttcatttatagcatgtcc 157379807
Query: 1707 agataaattaaaagaacttttgtctgagaaatgctgccaggcgcctattgtctaaatgta 1766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157379806 agataaattaaaagaacttttgtctgagaaatgctgccaggcgcctattgtctaaatgta 157379747
Query: 1767 gggtattttctaaaataaccttgaaattgtaaattgacacgtgtttgatcagattgtgtc 1826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157379746 gggtattttctaaaataaccttgaaattgtaaattgacacgtgtttgatcagattgtgtc 157379687
Query: 1827 aggtttaatttgttccnnnnnnnnngaaaaccacgttagcaataactacttcagtgacta 1886
|||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 157379686 aggtttaatttgttcctttttttttgaaaaccacgttagcaataactacttcagtgacta 157379627
Query: 1887 acacgttctgccgtgaaaggatccctgctggcaccatcacgagtgtgaacttgggggagg 1946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157379626 acacgttctgccgtgaaaggatccctgctggcaccatcacgagtgtgaacttgggggagg 157379567
Query: 1947 cagctgctttgttttgtttcctttctctccacctctgtcggttaaggtacttgttcctcg 2006
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157379566 cagctgctttgttttgtttcctttctctccacctctgtcggttaaggtacttgttcctcg 157379507
Query: 2007 actaataaaccctttgatacttttagccagaaatcagtctcataaagctatttttgagta 2066
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157379506 actaataaaccctttgatacttttagccagaaatcagtctcataaagctatttttgagta 157379447
Query: 2067 tagtttgtgtaaaataaaaatgtttagctttggtaatgacttttcaaagctgaactccct 2126
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 157379446 tagtttgtgtaaaataaaaatgtttagctttggtaatgacttttccaagctgaactccct 157379387
Query: 2127 ctagcaagatatttttcagtgcttttatttactatgcacttagactatgcactttttctg 2186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157379386 ctagcaagatatttttcagtgcttttatttactatgcacttagactatgcactttttctg 157379327
Query: 2187 aaatatttttgtaacacttaacttttttgtattttgccattggaaaaggttgtggtgtag 2246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157379326 aaatatttttgtaacacttaacttttttgtattttgccattggaaaaggttgtggtgtag 157379267
Query: 2247 ttggtctgtaattaattacgttgcagatgtaaaactgctgttagctttgtaaatcaaacg 2306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157379266 ttggtctgtaattaattacgttgcagatgtaaaactgctgttagctttgtaaatcaaacg 157379207
Query: 2307 ataggtgttttgtcctggtatattgtcattccattatcttcacagttcacacaagaagaa 2366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157379206 ataggtgttttgtcctggtatattgtcattccattatcttcacagttcacacaagaagaa 157379147
Query: 2367 tgtgaatttcagtgaatgctgttactaatcctgtcgggagatgaatctcatttcaccaaa 2426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157379146 tgtgaatttcagtgaatgctgttactaatcctgtcgggagatgaatctcatttcaccaaa 157379087
Query: 2427 ttaaattatgtttttccactaaaatgatggtacaagttgaagacacatcactttgaaatt 2486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157379086 ttaaattatgtttttccactaaaatgatggtacaagttgaagacacatcactttgaaatt 157379027
Query: 2487 ggacgacctcaccacttgagccccgcggtggcttcctccgccgaactcgaggttactctt 2546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157379026 ggacgacctcaccacttgagccccgcggtggcttcctccgccgaactcgaggttactctt 157378967
Query: 2547 gatttgttcacccactgggggtgcagttcctctaaatgttgggagatggccattctaact 2606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157378966 gatttgttcacccactgggggtgcagttcctctaaatgttgggagatggccattctaact 157378907
Query: 2607 actgttgaatgtctctgttttgggaaggtataacaagaaaataaaaaagaatatatatga 2666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157378906 actgttgaatgtctctgttttgggaaggtataacaagaaaataaaaaagaatatatatga 157378847
Query: 2667 a 2667
|
Sbjct: 157378846 a 157378846
Score = 1548 bits (781), Expect = 0.0
Identities = 798/806 (99%)
Strand = Plus / Minus
Query: 263 aggtttctaagcatgaatcgaggaacagaagcagcagagcagatgttcggagcagcattt 322
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 157381250 aggtttctaagcatgaatcgaggaacagaagcagcagagcagatgatcggagcagcattt 157381191
Query: 323 gtttctccccaaatctagacattttagttcatatgtacactagccagtggctgtggacaa 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157381190 gtttctccccaaatctagacattttagttcatatgtacactagccagtggctgtggacaa 157381131
Query: 383 ccatttccttggtgtaaagaacttcatttcggtataaactggctctgggcagcactggcg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157381130 ccatttccttggtgtaaagaacttcatttcggtataaactggctctgggcagcactggcg 157381071
Query: 443 atactgcgtcccgagttgtagccgctgtaattgtgaatattaactgagatagtgagacat 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157381070 atactgcgtcccgagttgtagccgctgtaattgtgaatattaactgagatagtgagacat 157381011
Query: 503 ggtgtccagttttctattgcattttttcaagtggaaaagttaactgagtggttgacacac 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157381010 ggtgtccagttttctattgcattttttcaagtggaaaagttaactgagtggttgacacac 157380951
Query: 563 acaaattggtggacagattgtgcatatgccaattgttttgttaaaaccttttcttttgaa 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157380950 acaaattggtggacagattgtgcatatgccaattgttttgttaaaaccttttcttttgaa 157380891
Query: 623 ctatactgctttgagatctcacttcagaagaacggcatgaacagtcttcagccgcagttg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157380890 ctatactgctttgagatctcacttcagaagaacggcatgaacagtcttcagccgcagttg 157380831
Query: 683 tgatggttgtaaatgctcgcagctgtgcgttcttagggtttcttcatccctggggtttgc 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157380830 tgatggttgtaaatgctcgcagctgtgcgttcttagggtttcttcatccctggggtttgc 157380771
Query: 743 aagttgttcacttaaaacattcttaacatggttggcttcttgtgtgcaagccagctgata 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157380770 aagttgttcacttaaaacattcttaacatggttggcttcttgtgtgcaagccagctgata 157380711
Query: 803 tggtagcaaccaaagattccagtgtttgagcatatgaaagactctgcctgcttacctgtg 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157380710 tggtagcaaccaaagattccagtgtttgagcatatgaaagactctgcctgcttacctgtg 157380651
Query: 863 ctagaaataacagcatctaaagtgaagacttaagaaaaacttagtgactactagattatc 922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157380650 ctagaaataacagcatctaaagtgaagacttaagaaaaacttagtgactactagattatc 157380591
Query: 923 cgtaggactctgcattaactctataatgttcttggtattnnnnnnngcatatttgtcaca 982
||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 157380590 cgtaggactctgcattaactctataatgttcttggtattaaaaaaagcatatttgtcaca 157380531
Query: 983 gaaatttagttaacatcttacaactgaacatgtgtgtatgttgcttagataaatgtaatc 1042
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157380530 gaaatttagttaacatcttacaactgaacatgtgtgtatgttgcttagataaatgtaatc 157380471
Query: 1043 actgtaaacatctatatgatctggga 1068
||||||||||||||||||||||||||
Sbjct: 157380470 actgtaaacatctatatgatctggga 157380445
Score = 232 bits (117), Expect = 8e-58
Identities = 117/117 (100%)
Strand = Plus / Minus
Query: 149 caggaccctgaatcaccaatatgactacacatttgactggacaatgttaaagcagaaagc 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157388664 caggaccctgaatcaccaatatgactacacatttgactggacaatgttaaagcagaaagc 157388605
Query: 209 agcacagcaagcagcctcttcaagtgggcagggtcagcaggcccaaacccccacagg 265
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157388604 agcacagcaagcagcctcttcaagtgggcagggtcagcaggcccaaacccccacagg 157388548
Score = 218 bits (110), Expect = 1e-53
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 43 aggggtttcctgcagaatttgccatgtacttaaactattgtcgtgggctgcgctttgagg 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157390264 aggggtttcctgcagaatttgccatgtacttaaactattgtcgtgggctgcgctttgagg 157390205
Query: 103 aagccccggattacatgtacctgagacagctattccgcattcttttcagg 152
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157390204 aagccccggattacatgtacctgagacagctattccgcattcttttcagg 157390155
Score = 89.7 bits (45), Expect = 7e-15
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 1 ttagcgaaaagaagatgtccacacctgtggaagttttgtgtaagg 45
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157392693 ttagcgaaaagaagatgtccacacctgtggaagttttgtgtaagg 157392649
>Sscrofa_Chr17
|| Length = 69701581
Score = 1360 bits (686), Expect = 0.0
Identities = 966/1058 (91%), Gaps = 19/1058 (1%)
Strand = Plus / Plus
Query: 1 ttagcgaaaagaagatgtccacacctgtggaagttttgtgtaaggggtttcctgcagaat 60
||||| ||| ||||||||||||| |||| || ||||| ||||||||||||||||||||||
Sbjct: 262755 ttagcaaaatgaagatgtccacatctgttgaggttttatgtaaggggtttcctgcagaat 262814
Query: 61 ttgccatgtacttaaactattgtcgtgggctgcgctttgaggaagccccggattacatgt 120
||||||||||||| |||| |||| |||||||||||||||||||| ||||||||||
Sbjct: 262815 ttgccatgtactt------ttgtggtggactgcgctttgaggaagccccagattacatgt 262868
Query: 121 acctgagacagctattccgcattcttttcaggaccctgaatcaccaatatgactacacat 180
||||||| ||||| |||||||||||| ||||||||||||| ||||||| |||||||||||
Sbjct: 262869 acctgaggcagctcttccgcattcttgtcaggaccctgaaccaccaatgtgactacacat 262928
Query: 181 ttgactggacaatgttaaagcagaaagcagcacagcaagcagcctcttcaagtgggcagg 240
|||| ||| |||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 262929 ttgattgggcaatgttaaagcagaaagcagcacagcagacagcctcttcaagtgcgcagg 262988
Query: 241 gtcagcaggcccaaacccccacaggtttctaagcatgaatcgaggaacagaagcagcaga 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 262989 gtcagcaggcccaaacccccacaggtttctaagcatgaattgaggaacagaagaagcaga 263048
Query: 301 gcagatgttcggagcagcatttgtttctccccaaatctagacattttagttcatatgtac 360
||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 263049 gcagatgatcggagcagcatttgcttctccccaaatctagaaattttagttcatatgtac 263108
Query: 361 actagccagtggctgtggacaaccatttccttggtgtaaagaacttcatttcggtataaa 420
|||||||||||| ||||||||||||||| ||||||||||||||||||||||| | |||||
Sbjct: 263109 actagccagtggttgtggacaaccatttacttggtgtaaagaacttcatttcaggataaa 263168
Query: 421 ctggctctgggcagcactggcgatactgcgtcccgagttgtagccgctgtaattgtgaat 480
|||| ||||||||||||||| ||| |||| ||| |||||||||| |||||| ||||||||
Sbjct: 263169 ctgggtctgggcagcactggtgatgctgcatcctgagttgtagctgctgtagttgtgaat 263228
Query: 481 attaactgagatagtgagacatggtgtccagttttctattgcattttttcaagtggaaaa 540
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263229 atcaactgagatagtgaaacatggtgtccagttttctattgcattttttcaagtggaaaa 263288
Query: 541 gttaactgagtggttgacacacacaaattggtggacagattgtgcatatgccaattgttt 600
||||||| ||||||||||||||||||||||||||||| | |||||||||||||||| |||
Sbjct: 263289 gttaactaagtggttgacacacacaaattggtggacaaactgtgcatatgccaatt-ttt 263347
Query: 601 tgttaaaaccttttcttttgaactatactgctttgagatctcacttcagaagaacggcat 660
|||||||| ||||| |||||||| ||||| ||||||||||||| ||||||||||| ||||
Sbjct: 263348 tgttaaaaacttttattttgaacgatactactttgagatctcatttcagaagaacagcat 263407
Query: 661 gaacagtcttcagccgcagttgtgatggttgtaaatgctcgcagctgtgcgttcttaggg 720
||||||||||||| | |||||||||||||||||||||||| | |||||| |||||||||
Sbjct: 263408 gaacagtcttcaggcacagttgtgatggttgtaaatgctcactactgtgcattcttaggg 263467
Query: 721 tttcttcatccctggggtttgcaagttgttcacttaaaacattcttaacatggttggctt 780
||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 263468 cttcttcatccctggggtgtgcaagttgttcacttaaaacattcctaaaatggttggctt 263527
Query: 781 cttgtgtgcaagccagctgatatggtagcaaccaaagattccagtgtttgagcatatgaa 840
||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 263528 cttgtttgcaagccagctgatatggtagcaaccaaaggttccaatgtttgagcatatgaa 263587
Query: 841 agactctgcctgcttacctgtgctagaaataacagcatctaaagtgaagacttaagaaaa 900
||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 263588 aga--ctgcctgcttacctgtgctagaaataacagcatctaaagtgaagacttaa-aaaa 263644
Query: 901 acttagtgactactagattatccgtaggactctgcattaactctataatgttcttggtat 960
| ||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||
Sbjct: 263645 aattagtgactactagattatccataggaccctgcattaactctataacgttcttggtat 263704
Query: 961 -----tnnnnnnngcatatttgtcacagaaatttagttaacatcttacaactgaacatgt 1015
| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 263705 ttaaataaaaaaagcatatttgtcacagaaatttagttaacatcttaaaactgaacatgt 263764
Query: 1016 gtgtatgttgcttagataaatgtaatcactgtaaacat 1053
||||||||||| ||||||||| ||||||||||||
Sbjct: 263765 atgtatgttgct----taaatgtaaccactgtaaacat 263798
Score = 244 bits (123), Expect = 2e-61
Identities = 225/255 (88%), Gaps = 13/255 (5%)
Strand = Plus / Plus
Query: 1354 aatgacttgcaggcgcaatacctcgtgctgcagccgcaagggccaggacttggtattgta 1413
|||||||||||||| |||||||| |||||||||| |||| |||||||||||||||||||
Sbjct: 264393 aatgacttgcaggcacaatacctagtgctgcagctgcaactgccaggacttggtattgta 264452
Query: 1414 actcctgcagcctcagacgaacagctggactgattttgaatgagaat----gaaagcgtt 1469
||| |||||||||||||| || |||||||| |||||||| ||||| |||||| ||
Sbjct: 264453 acttctgcagcctcagactaatggctggactaattttgaacaagaatgaaagaaagcatt 264512
Query: 1470 aaagggtttaactacaaaatgaagcttttctt--taaattccttgctaattggatctgag 1527
||||||||||||||| |||||||||||||||| || |||||||| ||||||||||||||
Sbjct: 264513 aaagggtttaactactaaatgaagcttttctttatatattccttgttaattggatctgag 264572
Query: 1528 gaggttgactccgaaactttggaaaagcatcttacctaccctgtgaggttc-tgggattg 1586
|||||||||||| |||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 264573 gaggttgactcc-taactttggaaaagcat-----ctaccctgtgaggttcttgggattg 264626
Query: 1587 ccagccctccctggc 1601
|||||||||||||||
Sbjct: 264627 ccagccctccctggc 264641
Score = 228 bits (115), Expect = 1e-56
Identities = 164/179 (91%), Gaps = 1/179 (0%)
Strand = Plus / Plus
Query: 1612 ctcaatccttatatgtggctcttttctctttctgacccaagaaaaagaaaagctaagcaa 1671
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 264678 ctcaatcctactatgtggctcttttctctttctgactgaagaaaaagaaaagctaagtaa 264737
Query: 1672 ttctttagtgtaatttcttcatttatagcatgtccagataaattaaaagaacttttgtct 1731
|| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 264738 ttatttagtgtaatttattcatttataacatgtccagataaattaaaagaacttttgtct 264797
Query: 1732 gagaaatgctgccaggcgcctattgtctaaatgtagggtattttctaaaataaccttga 1790
| ||||||||||||||||||| |||| ||||||| |||||||||||||||||||||
Sbjct: 264798 ggaaaatgctgccaggcgcctactgtccaaatgta-catattttctaaaataaccttga 264855
Score = 153 bits (77), Expect = 6e-34
Identities = 99/105 (94%), Gaps = 1/105 (0%)
Strand = Plus / Plus
Query: 1172 tgccttgctgactcactatgaaatcaaaatctccccaatttttacgagactatttcaagc 1231
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 263914 tgccttgctgactcactatgaaatcaaaatctcccaaatttttat-agactatttcaagc 263972
Query: 1232 catttgttatgtaattatcctttgcaaatcattttagatttagta 1276
||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 263973 tatttgttatataattatcctttgcaaatcattttaggtttagta 264017
Score = 115 bits (58), Expect = 1e-22
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 1777 taaaataaccttgaaattgtaaattgacacgtgtttgatcagattgtgtcaggtttaatt 1836
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 265114 taaaataaccttgaaattgtaaattaacacgtgtttgatcagattgtgtcaggtttaatt 265173
Query: 1837 tg 1838
||
Sbjct: 265174 tg 265175
>Sscrofa_Chr06
|| Length = 157765593
Score = 504 bits (254), Expect = e-139
Identities = 395/446 (88%), Gaps = 18/446 (4%)
Strand = Plus / Minus
Query: 1600 gctgcacttcgtctcaatccttatatgtggctcttttctctttctgacccaagaaaaaga 1659
|||||||||| |||||||||| | |||||||||||||||||||| |||||||||||||||
Sbjct: 107451070 gctgcacttcatctcaatcctaacatgtggctcttttctctttccgacccaagaaaaaga 107451011
Query: 1660 aaagctaagcaattctttagtgtaatttcttcatttatagcatgtccagataaattaaaa 1719
| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 107451010 agagctaagtaattctttagtgtaatttattcatttatagcatgtccagataaattaaaa 107450951
Query: 1720 gaacttttgtctgagaaatgctgccaggcgcctattgtctaaatgtagggtattttctaa 1779
|||||||||||||| ||||||||||||| |||||||||||| ||||||||
Sbjct: 107450950 gaacttttgtctgaaaaatgctgccaggtgcctattgtcta-----------ttttctaa 107450902
Query: 1780 aataaccttgaaattgtaaattgacacgtgtttgatcagattgtgtcaggtttaatttgt 1839
|| |||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 107450901 aacaaccttgagattgtaaattgacacgtgtttgatcagattgtgtcagatgtaatttgt 107450842
Query: 1840 tccnnnnnnnnn------gaaaaccacgttagcaataactacttcagtgactaacacgtt 1893
||| |||||| ||||||||||||| || |||| |||||||||||||
Sbjct: 107450841 tcctttttttttttttttgaaaactacgttagcaataattaattca-tgactaacacgtt 107450783
Query: 1894 ctgccgtgaaaggatccctgctggcaccatcacgagtgtgaacttgggggaggcagctgc 1953
||||| | ||||||||||| ||||||||||||| ||| ||||||||||| ||||||||||
Sbjct: 107450782 ctgccattaaaggatccctactggcaccatcaccagtatgaacttggggtaggcagctgc 107450723
Query: 1954 tttgttttgtttcctttctctccacctctgtcggttaaggtacttgttcctcgactaata 2013
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 107450722 tgtgttttgtttcctttctctccacctctgtcggttaaggtacttgtttctcgactaata 107450663
Query: 2014 aaccctttgatacttttagccagaaa 2039
||||||||||||||||||||||||||
Sbjct: 107450662 aaccctttgatacttttagccagaaa 107450637
Score = 327 bits (165), Expect = 2e-86
Identities = 257/287 (89%), Gaps = 7/287 (2%)
Strand = Plus / Minus
Query: 1315 cccttgaagcgaaaggcattcttaccattttcnnnnnnnaatgacttgcaggcgcaatac 1374
||||||||| |||||||||||||| ||||||| |||||||||||||| ||||||
Sbjct: 107451371 cccttgaagggaaaggcattcttatcattttctttttt-aatgacttgcaggcacaatac 107451313
Query: 1375 ctcgtgctgcagccgcaagggccaggacttggtattgtaactcctgcagcctcagacgaa 1434
|| ||||||||||| ||| | |||||||| |||||| ||||| |||||||||||||| ||
Sbjct: 107451312 ctagtgctgcagccacaacgcccaggactgggtattataacttctgcagcctcagactaa 107451253
Query: 1435 cagctggactgattttgaatgagaatgaaagcgttaaagggtttaactacaaaatgaagc 1494
|||||| ||||||||||||| ||||||||||||||||||||||||||| | |||||||||
Sbjct: 107451252 cagctg-actgattttgaataagaatgaaagcgttaaagggtttaactgcgaaatgaagc 107451194
Query: 1495 ttttctttaaattccttgctaattggatctgaggaggttgactccgaaactttggaaaag 1554
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 107451193 ttttctttaaattctttgctaattggatctgaggaggttgactccaaaactttggaaaag 107451134
Query: 1555 catcttacctaccctgtgaggttctgggattgccagccctccctggc 1601
||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 107451133 cat-----ctaccctgtgaggttcttggattgccagccctccctggc 107451092
>gb|JH118612.1| Sus scrofa unplaced genomic scaffold ChrUScaf1273
Length = 211935
Score = 496 bits (250), Expect = e-137
Identities = 394/446 (88%), Gaps = 18/446 (4%)
Strand = Plus / Plus
Query: 1600 gctgcacttcgtctcaatccttatatgtggctcttttctctttctgacccaagaaaaaga 1659
|||||||||| |||||||||| | |||||||||||||||||||| |||||||||||||||
Sbjct: 209640 gctgcacttcatctcaatcctaacatgtggctcttttctctttccgacccaagaaaaaga 209699
Query: 1660 aaagctaagcaattctttagtgtaatttcttcatttatagcatgtccagataaattaaaa 1719
| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 209700 agagctaagtaattctttagtgtaatttattcatttatagcatgtccagataaattaaaa 209759
Query: 1720 gaacttttgtctgagaaatgctgccaggcgcctattgtctaaatgtagggtattttctaa 1779
|||||||||||||| ||||||||||||| |||||||||||| ||||||||
Sbjct: 209760 gaacttttgtctgaaaaatgctgccaggtgcctattgtcta-----------ttttctaa 209808
Query: 1780 aataaccttgaaattgtaaattgacacgtgtttgatcagattgtgtcaggtttaatttgt 1839
|| |||||||| ||||||||||||||||||||||||||||||||||||| | | ||||||
Sbjct: 209809 aacaaccttgagattgtaaattgacacgtgtttgatcagattgtgtcagatgtcatttgt 209868
Query: 1840 tccnnnnnnnnn------gaaaaccacgttagcaataactacttcagtgactaacacgtt 1893
||| |||||| ||||||||||||| || |||| |||||||||||||
Sbjct: 209869 tcctttttttttttttttgaaaactacgttagcaataattaattca-tgactaacacgtt 209927
Query: 1894 ctgccgtgaaaggatccctgctggcaccatcacgagtgtgaacttgggggaggcagctgc 1953
||||| | ||||||||||| ||||||||||||| ||| ||||||||||| ||||||||||
Sbjct: 209928 ctgccattaaaggatccctactggcaccatcaccagtatgaacttggggtaggcagctgc 209987
Query: 1954 tttgttttgtttcctttctctccacctctgtcggttaaggtacttgttcctcgactaata 2013
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 209988 tgtgttttgtttcctttctctccacctctgtcggttaaggtacttgtttctcgactaata 210047
Query: 2014 aaccctttgatacttttagccagaaa 2039
||||||||||||||||||||||||||
Sbjct: 210048 aaccctttgatacttttagccagaaa 210073
Score = 327 bits (165), Expect = 2e-86
Identities = 257/287 (89%), Gaps = 7/287 (2%)
Strand = Plus / Plus
Query: 1315 cccttgaagcgaaaggcattcttaccattttcnnnnnnnaatgacttgcaggcgcaatac 1374
||||||||| |||||||||||||| ||||||| |||||||||||||| ||||||
Sbjct: 209339 cccttgaagggaaaggcattcttatcattttctttttt-aatgacttgcaggcacaatac 209397
Query: 1375 ctcgtgctgcagccgcaagggccaggacttggtattgtaactcctgcagcctcagacgaa 1434
|| ||||||||||| ||| | |||||||| |||||| ||||| |||||||||||||| ||
Sbjct: 209398 ctagtgctgcagccacaacgcccaggactgggtattataacttctgcagcctcagactaa 209457
Query: 1435 cagctggactgattttgaatgagaatgaaagcgttaaagggtttaactacaaaatgaagc 1494
|||||| ||||||||||||| ||||||||||||||||||||||||||| | |||||||||
Sbjct: 209458 cagctg-actgattttgaataagaatgaaagcgttaaagggtttaactgcgaaatgaagc 209516
Query: 1495 ttttctttaaattccttgctaattggatctgaggaggttgactccgaaactttggaaaag 1554
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 209517 ttttctttaaattctttgctaattggatctgaggaggttgactccaaaactttggaaaag 209576
Query: 1555 catcttacctaccctgtgaggttctgggattgccagccctccctggc 1601
||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 209577 cat-----ctaccctgtgaggttcttggattgccagccctccctggc 209618
>Sscrofa_Chr01
|| Length = 315321322
Score = 87.7 bits (44), Expect = 3e-14
Identities = 50/52 (96%)
Strand = Plus / Plus
Query: 798 tgatatggtagcaaccaaagattccagtgtttgagcatatgaaagactctgc 849
||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 242020232 tgatatggtagcaaccaaagattcctgtgtttgtgcatatgaaagactctgc 242020283
>Sscrofa_Chr09
|| Length = 153670197
Score = 85.7 bits (43), Expect = 1e-13
Identities = 97/115 (84%)
Strand = Plus / Plus
Query: 727 catccctggggtttgcaagttgttcacttaaaacattcttaacatggttggcttcttgtg 786
||||| || |||||||||||||||||||||||| ||||||| |||| ||||||||||
Sbjct: 96801587 catccatgaggtttgcaagttgttcacttaaaattttcttaaaatggagggcttcttgtt 96801646
Query: 787 tgcaagccagctgatatggtagcaaccaaagattccagtgtttgagcatatgaaa 841
|| ||||||| |||| | |||||||||||||||| | ||||||||| |||||
Sbjct: 96801647 tgtaagccagatgatgaagaagcaaccaaagattcctggttttgagcatgtgaaa 96801701
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 97,553,075
Number of extensions: 1254
Number of successful extensions: 1254
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1238
Number of HSP's successfully gapped: 27
Length of query: 2691
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2669
Effective length of database: 2,808,408,574
Effective search space: 7495642484006
Effective search space used: 7495642484006
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)