Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= OVRT1_0096_D07
         (1405 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_004346.1| HLA class II histocompatibility antigen gamma c...   308   6e-84
Alignment   gi|NP_001020330.1| HLA class II histocompatibility antigen gamm...   278   9e-75
Alignment   gi|NP_001020329.1| HLA class II histocompatibility antigen gamm...   187   2e-47

>ref|NP_004346.1| HLA class II histocompatibility antigen gamma chain isoform b [Homo
           sapiens].
          Length = 232

 Score =  308 bits (790), Expect = 6e-84
 Identities = 154/218 (70%), Positives = 177/218 (81%), Gaps = 2/218 (0%)
 Frame = +1

Query: 190 QARTMEDQRDLISNHEQLPMLGQRPGAPESKCSRGALYTGFSVLVALLLAGQATTAYFLY 369
           Q   M+DQRDLISN+EQLPMLG+RPGAPESKCSRGALYTGFS+LV LLLAGQATTAYFLY
Sbjct: 13  QKPVMDDQRDLISNNEQLPMLGRRPGAPESKCSRGALYTGFSILVTLLLAGQATTAYFLY 72

Query: 370 QQQGRLDKLTVTSQNLQLEXXXXXXXXXXXXXXXXXVSAPMLMQALPMEG-PE-PMRNAT 543
           QQQGRLDKLTVTSQNLQLE                 ++ P+LMQALPM   P+ PM+NAT
Sbjct: 73  QQQGRLDKLTVTSQNLQLENLRMKLPKPPKPVSKMRMATPLLMQALPMGALPQGPMQNAT 132

Query: 544 KYGNMTQDHVMHLLLKSDPLGVYPKLKGSLPENLKHLKNTMDGVNWKLFENWLRQWLLFE 723
           KYGNMT+DHVMHLL  +DPL VYP LKGS PENL+HLKNTM+ ++WK+FE+W+  WLLFE
Sbjct: 133 KYGNMTEDHVMHLLQNADPLKVYPPLKGSFPENLRHLKNTMETIDWKVFESWMHHWLLFE 192

Query: 724 MSKNSLEETPFEVPPKDPLETEDLSSGLGVTKQDLGQV 837
           MS++SLE+ P + PPK+ LE ED SSGLGVTKQDLG V
Sbjct: 193 MSRHSLEQKPTDAPPKESLELEDPSSGLGVTKQDLGPV 230


>ref|NP_001020330.1| HLA class II histocompatibility antigen gamma chain isoform a [Homo
           sapiens].
          Length = 296

 Score =  278 bits (711), Expect = 9e-75
 Identities = 137/196 (69%), Positives = 159/196 (81%), Gaps = 2/196 (1%)
 Frame = +1

Query: 190 QARTMEDQRDLISNHEQLPMLGQRPGAPESKCSRGALYTGFSVLVALLLAGQATTAYFLY 369
           Q   M+DQRDLISN+EQLPMLG+RPGAPESKCSRGALYTGFS+LV LLLAGQATTAYFLY
Sbjct: 13  QKPVMDDQRDLISNNEQLPMLGRRPGAPESKCSRGALYTGFSILVTLLLAGQATTAYFLY 72

Query: 370 QQQGRLDKLTVTSQNLQLEXXXXXXXXXXXXXXXXXVSAPMLMQALPMEG-PE-PMRNAT 543
           QQQGRLDKLTVTSQNLQLE                 ++ P+LMQALPM   P+ PM+NAT
Sbjct: 73  QQQGRLDKLTVTSQNLQLENLRMKLPKPPKPVSKMRMATPLLMQALPMGALPQGPMQNAT 132

Query: 544 KYGNMTQDHVMHLLLKSDPLGVYPKLKGSLPENLKHLKNTMDGVNWKLFENWLRQWLLFE 723
           KYGNMT+DHVMHLL  +DPL VYP LKGS PENL+HLKNTM+ ++WK+FE+W+  WLLFE
Sbjct: 133 KYGNMTEDHVMHLLQNADPLKVYPPLKGSFPENLRHLKNTMETIDWKVFESWMHHWLLFE 192

Query: 724 MSKNSLEETPFEVPPK 771
           MS++SLE+ P + PPK
Sbjct: 193 MSRHSLEQKPTDAPPK 208


>ref|NP_001020329.1| HLA class II histocompatibility antigen gamma chain isoform c [Homo
           sapiens].
          Length = 160

 Score =  187 bits (476), Expect = 2e-47
 Identities = 98/134 (73%), Positives = 108/134 (80%), Gaps = 2/134 (1%)
 Frame = +1

Query: 190 QARTMEDQRDLISNHEQLPMLGQRPGAPESKCSRGALYTGFSVLVALLLAGQATTAYFLY 369
           Q   M+DQRDLISN+EQLPMLG+RPGAPESKCSRGALYTGFS+LV LLLAGQATTAYFLY
Sbjct: 13  QKPVMDDQRDLISNNEQLPMLGRRPGAPESKCSRGALYTGFSILVTLLLAGQATTAYFLY 72

Query: 370 QQQGRLDKLTVTSQNLQLEXXXXXXXXXXXXXXXXXVSAPMLMQALPMEG-PE-PMRNAT 543
           QQQGRLDKLTVTSQNLQLE                 ++ P+LMQALPM   P+ PM+NAT
Sbjct: 73  QQQGRLDKLTVTSQNLQLENLRMKLPKPPKPVSKMRMATPLLMQALPMGALPQGPMQNAT 132

Query: 544 KYGNMTQDHVMHLL 585
           KYGNMT+DHVMHLL
Sbjct: 133 KYGNMTEDHVMHLL 146


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 59,222,063
Number of extensions: 1824521
Number of successful extensions: 11633
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 11463
Number of HSP's successfully gapped: 3
Length of query: 468
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 362
Effective length of database: 14,802,980
Effective search space: 5358678760
Effective search space used: 5358678760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= OVRT1_0096_D07
         (1405 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_034675.1| H-2 class II histocompatibility antigen gamma c...   296   3e-80
Alignment   gi|NP_001036070.1| H-2 class II histocompatibility antigen gamm...   260   2e-69

>ref|NP_034675.1| H-2 class II histocompatibility antigen gamma chain isoform 2 [Mus
           musculus].
          Length = 215

 Score =  296 bits (757), Expect = 3e-80
 Identities = 151/217 (69%), Positives = 175/217 (80%), Gaps = 3/217 (1%)
 Frame = +1

Query: 202 MEDQRDLISNHEQLPMLGQRPGAPESKCSRGALYTGFSVLVALLLAGQATTAYFLYQQQG 381
           M+DQRDLISNHEQLP+LG RP  PE +CSRGALYTG SVLVALLLAGQATTAYFLYQQQG
Sbjct: 1   MDDQRDLISNHEQLPILGNRPREPE-RCSRGALYTGVSVLVALLLAGQATTAYFLYQQQG 59

Query: 382 RLDKLTVTSQNLQLEXXXXXXXXXXXXXXXXXVSAPMLMQALPMEGP--EPMRNATKYGN 555
           RLDKLT+TSQNLQLE                 ++ P+LM+ + M+     P++N TKYGN
Sbjct: 60  RLDKLTITSQNLQLESLRMKLPKSAKPVSQMRMATPLLMRPMSMDNMLLGPVKNVTKYGN 119

Query: 556 MTQDHVMHLLLKSDPLGVYPKLKGSLPENLKHLKNTMDGVNWKLFENWLRQWLLFEMSKN 735
           MTQDHVMHLL +S PL  YP+LKG+ PENLKHLKN+MDGVNWK+FE+W++QWLLFEMSKN
Sbjct: 120 MTQDHVMHLLTRSGPL-EYPQLKGTFPENLKHLKNSMDGVNWKIFESWMKQWLLFEMSKN 178

Query: 736 SLEE-TPFEVPPKDPLETEDLSSGLGVTKQDLGQVIL 843
           SLEE  P E PPK+PL+ EDLSSGLGVT+Q+LGQV L
Sbjct: 179 SLEEKKPTEAPPKEPLDMEDLSSGLGVTRQELGQVTL 215


>ref|NP_001036070.1| H-2 class II histocompatibility antigen gamma chain isoform 1 [Mus
           musculus].
          Length = 279

 Score =  260 bits (664), Expect = 2e-69
 Identities = 133/193 (68%), Positives = 153/193 (79%), Gaps = 3/193 (1%)
 Frame = +1

Query: 202 MEDQRDLISNHEQLPMLGQRPGAPESKCSRGALYTGFSVLVALLLAGQATTAYFLYQQQG 381
           M+DQRDLISNHEQLP+LG RP  PE +CSRGALYTG SVLVALLLAGQATTAYFLYQQQG
Sbjct: 1   MDDQRDLISNHEQLPILGNRPREPE-RCSRGALYTGVSVLVALLLAGQATTAYFLYQQQG 59

Query: 382 RLDKLTVTSQNLQLEXXXXXXXXXXXXXXXXXVSAPMLMQALPMEGP--EPMRNATKYGN 555
           RLDKLT+TSQNLQLE                 ++ P+LM+ + M+     P++N TKYGN
Sbjct: 60  RLDKLTITSQNLQLESLRMKLPKSAKPVSQMRMATPLLMRPMSMDNMLLGPVKNVTKYGN 119

Query: 556 MTQDHVMHLLLKSDPLGVYPKLKGSLPENLKHLKNTMDGVNWKLFENWLRQWLLFEMSKN 735
           MTQDHVMHLL +S PL  YP+LKG+ PENLKHLKN+MDGVNWK+FE+W++QWLLFEMSKN
Sbjct: 120 MTQDHVMHLLTRSGPL-EYPQLKGTFPENLKHLKNSMDGVNWKIFESWMKQWLLFEMSKN 178

Query: 736 SLEE-TPFEVPPK 771
           SLEE  P E PPK
Sbjct: 179 SLEEKKPTEAPPK 191


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 49,531,702
Number of extensions: 1485607
Number of successful extensions: 8991
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8803
Number of HSP's successfully gapped: 2
Length of query: 468
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 363
Effective length of database: 12,463,779
Effective search space: 4524351777
Effective search space used: 4524351777
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= OVRT1_0096_D07
         (1405 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_998939.1| CD74 antigen [Sus scrofa].                           394   e-110

>ref|NP_998939.1| CD74 antigen [Sus scrofa].
          Length = 214

 Score =  394 bits (1011), Expect = e-110
 Identities = 197/214 (92%), Positives = 197/214 (92%)
 Frame = +1

Query: 202 MEDQRDLISNHEQLPMLGQRPGAPESKCSRGALYTGFSVLVALLLAGQATTAYFLYQQQG 381
           MEDQRDLISNHEQLPMLGQRPGAPESKCSRGALYTGFSVLVALLLAGQATTAYFLYQQQG
Sbjct: 1   MEDQRDLISNHEQLPMLGQRPGAPESKCSRGALYTGFSVLVALLLAGQATTAYFLYQQQG 60

Query: 382 RLDKLTVTSQNLQLEXXXXXXXXXXXXXXXXXVSAPMLMQALPMEGPEPMRNATKYGNMT 561
           RLDKLTVTSQNLQLE                 VSAPMLMQALPMEGPEPMRNATKYGNMT
Sbjct: 61  RLDKLTVTSQNLQLESLRMKLPKPSKPLSKMRVSAPMLMQALPMEGPEPMRNATKYGNMT 120

Query: 562 QDHVMHLLLKSDPLGVYPKLKGSLPENLKHLKNTMDGVNWKLFENWLRQWLLFEMSKNSL 741
           QDHVMHLLLKSDPLGVYPKLKGSLPENLKHLKNTMDGVNWKLFENWLRQWLLFEMSKNSL
Sbjct: 121 QDHVMHLLLKSDPLGVYPKLKGSLPENLKHLKNTMDGVNWKLFENWLRQWLLFEMSKNSL 180

Query: 742 EETPFEVPPKDPLETEDLSSGLGVTKQDLGQVIL 843
           EETPFEVPPKDPLETEDLSSGLGVTKQDLGQVIL
Sbjct: 181 EETPFEVPPKDPLETEDLSSGLGVTKQDLGQVIL 214


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 38,024,888
Number of extensions: 1236478
Number of successful extensions: 8022
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7777
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 365
Effective length of database: 8,779,541
Effective search space: 3204532465
Effective search space used: 3204532465
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= OVRT1_0096_D07
         (1405 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_536468.2| PREDICTED: similar to HLA class II histocompati...   289   5e-78

>ref|XP_536468.2| PREDICTED: similar to HLA class II histocompatibility antigen,
           gamma chain (HLA-DR antigens associated invariant chain)
           (Ia antigen-associated invariant chain) (Ii) (p33) (CD74
           antigen) [Canis familiaris].
          Length = 272

 Score =  289 bits (739), Expect = 5e-78
 Identities = 146/192 (76%), Positives = 162/192 (84%), Gaps = 2/192 (1%)
 Frame = +1

Query: 202 MEDQRDLISNHEQLPMLGQRPGAPESKCSRGALYTGFSVLVALLLAGQATTAYFLYQQQG 381
           MEDQRDLISNHEQLP+LGQRPGAPESKCSRGALYTGFSVLVALLLAGQATTAYFLYQQQG
Sbjct: 1   MEDQRDLISNHEQLPILGQRPGAPESKCSRGALYTGFSVLVALLLAGQATTAYFLYQQQG 60

Query: 382 RLDKLTVTSQNLQLEXXXXXXXXXXXXXXXXXVSAPMLMQALPMEG-PE-PMRNATKYGN 555
           RLDKLTVTSQNLQLE                 V+ PM+MQALP++  P+ P +NAT+YGN
Sbjct: 61  RLDKLTVTSQNLQLESLRMKLPKPPKPLSKMRVATPMMMQALPIQSLPQGPTQNATEYGN 120

Query: 556 MTQDHVMHLLLKSDPLGVYPKLKGSLPENLKHLKNTMDGVNWKLFENWLRQWLLFEMSKN 735
           MTQDHVMHLLL++DPL VYPKLKGS PENLKHLKNTM+ ++WK+FENW+ QWLLFEMSKN
Sbjct: 121 MTQDHVMHLLLEADPLKVYPKLKGSFPENLKHLKNTMETLDWKVFENWMYQWLLFEMSKN 180

Query: 736 SLEETPFEVPPK 771
           SLE+   EVP K
Sbjct: 181 SLEKKSTEVPLK 192


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 60,628,176
Number of extensions: 1889551
Number of successful extensions: 12806
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 12628
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 362
Effective length of database: 15,340,888
Effective search space: 5553401456
Effective search space used: 5553401456
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA OVRT1_0096_D07

Animal-Genome cDNA OVRT1_0096_D07


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= OVRT1_0096_D07
         (1405 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001029907.1| CD74 antigen [Bos taurus].                        333   3e-91

>ref|NP_001029907.1| CD74 antigen [Bos taurus].
          Length = 204

 Score =  333 bits (853), Expect = 3e-91
 Identities = 165/204 (80%), Positives = 177/204 (86%)
 Frame = +1

Query: 202 MEDQRDLISNHEQLPMLGQRPGAPESKCSRGALYTGFSVLVALLLAGQATTAYFLYQQQG 381
           MEDQRDLISNHEQLPMLGQRPGA ESKCSRGALYTGFSVLVALLLAGQATTAYFLYQQQG
Sbjct: 1   MEDQRDLISNHEQLPMLGQRPGAQESKCSRGALYTGFSVLVALLLAGQATTAYFLYQQQG 60

Query: 382 RLDKLTVTSQNLQLEXXXXXXXXXXXXXXXXXVSAPMLMQALPMEGPEPMRNATKYGNMT 561
           RLDKLTVTSQNLQLE                 ++ PMLM+ALPM GPEPM+NATKYGNMT
Sbjct: 61  RLDKLTVTSQNLQLENLRMKLPKPAKPMSQMRMATPMLMRALPMAGPEPMKNATKYGNMT 120

Query: 562 QDHVMHLLLKSDPLGVYPKLKGSLPENLKHLKNTMDGVNWKLFENWLRQWLLFEMSKNSL 741
           QDHVMHLLLK+DPL VYP+LKGSLPENLKHLK++MDG++WKLFE+WL QWLLFEMSKNSL
Sbjct: 121 QDHVMHLLLKADPLKVYPQLKGSLPENLKHLKDSMDGLDWKLFESWLHQWLLFEMSKNSL 180

Query: 742 EETPFEVPPKDPLETEDLSSGLGV 813
           EE PFE PPKDP+E E  SSGLGV
Sbjct: 181 EEKPFEGPPKDPMEMEYPSSGLGV 204


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 58,347,300
Number of extensions: 1851983
Number of successful extensions: 12232
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 12055
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 362
Effective length of database: 14,174,046
Effective search space: 5131004652
Effective search space used: 5131004652
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= OVRT1_0096_D07
         (1405 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done

 ***** No hits found ******


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,118,220
Number of extensions: 266
Number of successful extensions: 266
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 266
Number of HSP's successfully gapped: 0
Length of query: 1405
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1384
Effective length of database: 2,808,413,156
Effective search space: 3886843807904
Effective search space used: 3886843807904
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)