Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PBL01_0057_D05
(2001 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533764.2| PREDICTED: similar to ADP-ribosylation factor-l... 342 8e-94
Alignment gi|XP_538032.1| PREDICTED: similar to PRA1 family protein 2 (JM... 143 7e-34
Alignment gi|XP_848613.1| PREDICTED: similar to ADP-ribosylation factor-l... 108 2e-23
>ref|XP_533764.2| PREDICTED: similar to ADP-ribosylation factor-like 6 interacting
protein 5 [Canis familiaris].
Length = 188
Score = 342 bits (877), Expect = 8e-94
Identities = 171/188 (90%), Positives = 174/188 (92%)
Frame = +2
Query: 143 MDVNIAPLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISVVGF 322
MDVN APLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISVVGF
Sbjct: 1 MDVNFAPLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISVVGF 60
Query: 323 LSPFNMILGGIVVVLVFTGFVWAAHNKDILRRLKKQYPTVFVMVVMLASYFLISMFGGVM 502
LSPFNMILGGIVVVLVFTGFVWAAHNKDILRR+KKQYPT FVMVVMLASYFLISMFGGVM
Sbjct: 61 LSPFNMILGGIVVVLVFTGFVWAAHNKDILRRMKKQYPTTFVMVVMLASYFLISMFGGVM 120
Query: 503 VFVFGITFPLLLMFIHASXXXXXXXXXXENKIEGIGLKRTPMGIVLDALEQQEENISKFA 682
VFVFGITFPLLLMFIHAS ENK+EGIGLKRTPMGIVLDALEQQEE +SKFA
Sbjct: 121 VFVFGITFPLLLMFIHASLRLRNLKNKLENKMEGIGLKRTPMGIVLDALEQQEETVSKFA 180
Query: 683 DYISKVNE 706
DYISKV E
Sbjct: 181 DYISKVKE 188
>ref|XP_538032.1| PREDICTED: similar to PRA1 family protein 2 (JM4 protein) [Canis
familiaris].
Length = 178
Score = 143 bits (360), Expect = 7e-34
Identities = 70/173 (40%), Positives = 104/173 (60%)
Frame = +2
Query: 146 DVNIAPLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISVVGFL 325
+V + PLRA DDF GS R A PD D +W +RV++NLLYYQTNYL+ +++ G++
Sbjct: 3 EVRLPPLRALDDFVLGSARLAAPDPCDPQRWCHRVINNLLYYQTNYLLCFLFSLALAGYM 62
Query: 326 SPFNMILGGIVVVLVFTGFVWAAHNKDILRRLKKQYPTVFVMVVMLASYFLISMFGGVMV 505
P + +L +VV + VWAA + +RR ++ +P + V+ ++ GG
Sbjct: 63 RPLHTLLSALVVTVALGVLVWAAETQAAVRRCRRSHPAACLAAVLAFGLLVLWAVGGACT 122
Query: 506 FVFGITFPLLLMFIHASXXXXXXXXXXENKIEGIGLKRTPMGIVLDALEQQEE 664
F+ I P+LL+ +HAS ENKIE IGLKRTPMG++L+AL Q++E
Sbjct: 123 FLLSIAGPVLLILVHASLRLRNLKNKIENKIESIGLKRTPMGLLLEALGQEQE 175
>ref|XP_848613.1| PREDICTED: similar to ADP-ribosylation factor-like 6 interacting
protein 5 [Canis familiaris].
Length = 140
Score = 108 bits (270), Expect = 2e-23
Identities = 60/99 (60%), Positives = 68/99 (68%), Gaps = 2/99 (2%)
Frame = +2
Query: 416 RLKKQYPTVFVMVVMLASYF--LISMFGGVMVFVFGITFPLLLMFIHASXXXXXXXXXXE 589
R ++ +PT V+V Y LIS+F GV VFVFGIT PLLLM IH S E
Sbjct: 42 RAEQPHPTARVLVPGRVGYSCRLISVFAGVAVFVFGITLPLLLMLIHGSLRLRNLQNELE 101
Query: 590 NKIEGIGLKRTPMGIVLDALEQQEENISKFADYISKVNE 706
NK+EGIG KRTPMGIVLDA EQQEE +SKFADYISKV +
Sbjct: 102 NKMEGIGSKRTPMGIVLDAPEQQEETVSKFADYISKVKK 140
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 61,334,395
Number of extensions: 1469649
Number of successful extensions: 4218
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4184
Number of HSP's successfully gapped: 3
Length of query: 667
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 558
Effective length of database: 15,240,880
Effective search space: 8504411040
Effective search space used: 8504411040
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA PBL01_0057_D05
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PBL01_0057_D05
(2001 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001014891.1| PRA1 family protein 3 [Bos taurus]. 336 4e-92
Alignment gi|NP_001039474.1| PRA1 family protein 2 [Bos taurus]. 141 2e-33
>ref|NP_001014891.1| PRA1 family protein 3 [Bos taurus].
Length = 188
Score = 336 bits (862), Expect = 4e-92
Identities = 168/188 (89%), Positives = 174/188 (92%)
Frame = +2
Query: 143 MDVNIAPLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISVVGF 322
MDVNIAPLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISVVGF
Sbjct: 1 MDVNIAPLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISVVGF 60
Query: 323 LSPFNMILGGIVVVLVFTGFVWAAHNKDILRRLKKQYPTVFVMVVMLASYFLISMFGGVM 502
LSPFNMILGGIVVVLVFTGFVWAAHNKDILRR+KKQYPT FVMVVMLASYFLIS+FGGVM
Sbjct: 61 LSPFNMILGGIVVVLVFTGFVWAAHNKDILRRMKKQYPTAFVMVVMLASYFLISLFGGVM 120
Query: 503 VFVFGITFPLLLMFIHASXXXXXXXXXXENKIEGIGLKRTPMGIVLDALEQQEENISKFA 682
VFVFGITFPLLLMFIHAS ENK+E IGLKRTPMGIVLDALEQQEE I+KF+
Sbjct: 121 VFVFGITFPLLLMFIHASLRLRNLKNKLENKMEEIGLKRTPMGIVLDALEQQEETITKFS 180
Query: 683 DYISKVNE 706
DYISK+ E
Sbjct: 181 DYISKMKE 188
>ref|NP_001039474.1| PRA1 family protein 2 [Bos taurus].
Length = 178
Score = 141 bits (355), Expect = 2e-33
Identities = 69/173 (39%), Positives = 105/173 (60%)
Frame = +2
Query: 146 DVNIAPLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISVVGFL 325
+V + PLRA DDF GS R PD D +W +RV++NLLYYQTNYL+ + +++ G++
Sbjct: 3 EVRLPPLRALDDFVLGSARLVAPDPCDPQRWCHRVINNLLYYQTNYLICFGLGLALAGYV 62
Query: 326 SPFNMILGGIVVVLVFTGFVWAAHNKDILRRLKKQYPTVFVMVVMLASYFLISMFGGVMV 505
P + +L +VV + V AA N+ +RR ++ +P + V+ + ++ GG
Sbjct: 63 RPLHTLLSALVVAVALGMLVCAAENRAAVRRCRRSHPAACLAAVLAVGFLVLWAAGGAGT 122
Query: 506 FVFGITFPLLLMFIHASXXXXXXXXXXENKIEGIGLKRTPMGIVLDALEQQEE 664
F+ I P+LL+ +HAS ENKIE IGLKRTPMG++L+AL Q++E
Sbjct: 123 FLLSIAGPVLLILVHASLRLRNLKNKIENKIESIGLKRTPMGLLLEALGQEQE 175
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 60,111,365
Number of extensions: 1677593
Number of successful extensions: 3902
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3868
Number of HSP's successfully gapped: 2
Length of query: 667
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 558
Effective length of database: 14,074,782
Effective search space: 7853728356
Effective search space used: 7853728356
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PBL01_0057_D05
(2001 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006398.1| PRA1 family protein 3 [Homo sapiens]. 335 7e-92
Alignment gi|NP_009144.1| PRA1 family protein 2 [Homo sapiens]. 146 6e-35
>ref|NP_006398.1| PRA1 family protein 3 [Homo sapiens].
Length = 188
Score = 335 bits (860), Expect = 7e-92
Identities = 166/188 (88%), Positives = 173/188 (92%)
Frame = +2
Query: 143 MDVNIAPLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISVVGF 322
MDVNIAPLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMIS+VGF
Sbjct: 1 MDVNIAPLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISIVGF 60
Query: 323 LSPFNMILGGIVVVLVFTGFVWAAHNKDILRRLKKQYPTVFVMVVMLASYFLISMFGGVM 502
LSPFNMILGGIVVVLVFTGFVWAAHNKD+LRR+KK+YPT FVMVVMLASYFLISMFGGVM
Sbjct: 61 LSPFNMILGGIVVVLVFTGFVWAAHNKDVLRRMKKRYPTTFVMVVMLASYFLISMFGGVM 120
Query: 503 VFVFGITFPLLLMFIHASXXXXXXXXXXENKIEGIGLKRTPMGIVLDALEQQEENISKFA 682
VFVFGITFPLLLMFIHAS ENK+EGIGLKRTPMGIVLDALEQQEE I++
Sbjct: 121 VFVFGITFPLLLMFIHASLRLRNLKNKLENKMEGIGLKRTPMGIVLDALEQQEEGINRLT 180
Query: 683 DYISKVNE 706
DYISKV E
Sbjct: 181 DYISKVKE 188
>ref|NP_009144.1| PRA1 family protein 2 [Homo sapiens].
Length = 178
Score = 146 bits (369), Expect = 6e-35
Identities = 71/173 (41%), Positives = 107/173 (61%)
Frame = +2
Query: 146 DVNIAPLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISVVGFL 325
+V + PLRA DDF GS R A PD D +W +RV++NLLYYQTNYL+ + +++ G++
Sbjct: 3 EVRLPPLRALDDFVLGSARLAAPDPCDPQRWCHRVINNLLYYQTNYLLCFGIGLALAGYV 62
Query: 326 SPFNMILGGIVVVLVFTGFVWAAHNKDILRRLKKQYPTVFVMVVMLASYFLISMFGGVMV 505
P + +L +VV + VWAA + +RR ++ +P + V+ ++ + GG
Sbjct: 63 RPLHTLLSALVVAVALGVLVWAAETRAAVRRCRRSHPAACLAAVLAVGLLVLWVAGGACT 122
Query: 506 FVFGITFPLLLMFIHASXXXXXXXXXXENKIEGIGLKRTPMGIVLDALEQQEE 664
F+F I P+LL+ +HAS ENKIE IGLKRTPMG++L+AL Q++E
Sbjct: 123 FLFSIAGPVLLILVHASLRLRNLKNKIENKIESIGLKRTPMGLLLEALGQEQE 175
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 60,229,113
Number of extensions: 1432694
Number of successful extensions: 4023
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3975
Number of HSP's successfully gapped: 2
Length of query: 667
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 558
Effective length of database: 14,704,088
Effective search space: 8204881104
Effective search space used: 8204881104
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PBL01_0057_D05
(2001 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_075368.1| PRA1 family protein 3 [Mus musculus]. 335 1e-91
Alignment gi|NP_613068.1| PRA1 family protein 2 [Mus musculus]. 151 2e-36
>ref|NP_075368.1| PRA1 family protein 3 [Mus musculus].
Length = 188
Score = 335 bits (858), Expect = 1e-91
Identities = 164/188 (87%), Positives = 173/188 (92%)
Frame = +2
Query: 143 MDVNIAPLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISVVGF 322
MDVN+APLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISVVGF
Sbjct: 1 MDVNLAPLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISVVGF 60
Query: 323 LSPFNMILGGIVVVLVFTGFVWAAHNKDILRRLKKQYPTVFVMVVMLASYFLISMFGGVM 502
LSPFNMILGG++VVLVF GFVWAAHNKDILRR+KKQYPT FVMVVMLASYFLISMFGGVM
Sbjct: 61 LSPFNMILGGVIVVLVFMGFVWAAHNKDILRRMKKQYPTAFVMVVMLASYFLISMFGGVM 120
Query: 503 VFVFGITFPLLLMFIHASXXXXXXXXXXENKIEGIGLKRTPMGIVLDALEQQEENISKFA 682
VFVFGIT PLLLMFIHAS ENK+EGIGLK+TPMGI+LDALEQQE+NI+KFA
Sbjct: 121 VFVFGITLPLLLMFIHASLRLRNLKNKLENKMEGIGLKKTPMGIILDALEQQEDNINKFA 180
Query: 683 DYISKVNE 706
DYISK E
Sbjct: 181 DYISKARE 188
>ref|NP_613068.1| PRA1 family protein 2 [Mus musculus].
Length = 178
Score = 151 bits (382), Expect = 2e-36
Identities = 73/173 (42%), Positives = 108/173 (62%)
Frame = +2
Query: 146 DVNIAPLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISVVGFL 325
+V + PLRA DDF GS R A PD D +W +RV++NLLYYQTNYL+ + +++ G++
Sbjct: 3 EVRLPPLRALDDFVLGSARLAAPDPGDPQRWCHRVINNLLYYQTNYLLCFGISLALAGYI 62
Query: 326 SPFNMILGGIVVVLVFTGFVWAAHNKDILRRLKKQYPTVFVMVVMLASYFLISMFGGVMV 505
P + +L +VVV+ VWAA + +RR ++ +P + V+ S F++ GG
Sbjct: 63 RPLHTLLSALVVVVALGVLVWAAETRAAVRRCRRSHPAACLAAVLAISLFILWAVGGAFT 122
Query: 506 FVFGITFPLLLMFIHASXXXXXXXXXXENKIEGIGLKRTPMGIVLDALEQQEE 664
F+ IT P+ L+ +HAS ENKIE IGLKRTPMG++L+AL Q++E
Sbjct: 123 FLLSITAPVFLILLHASLRLRNLKNKIENKIESIGLKRTPMGLLLEALGQEQE 175
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 51,666,694
Number of extensions: 1238960
Number of successful extensions: 3525
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3448
Number of HSP's successfully gapped: 2
Length of query: 667
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 559
Effective length of database: 12,373,671
Effective search space: 6916882089
Effective search space used: 6916882089
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PBL01_0057_D05
(2001 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001041538.1| PRA1 family protein 3 [Sus scrofa]. 352 4e-97
Alignment gi|NP_001230809.1| PRA1 domain family, member 2 [Sus scrofa]. 147 2e-35
>ref|NP_001041538.1| PRA1 family protein 3 [Sus scrofa].
Length = 188
Score = 352 bits (903), Expect = 4e-97
Identities = 178/188 (94%), Positives = 178/188 (94%)
Frame = +2
Query: 143 MDVNIAPLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISVVGF 322
MDVNIAPLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISVVGF
Sbjct: 1 MDVNIAPLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISVVGF 60
Query: 323 LSPFNMILGGIVVVLVFTGFVWAAHNKDILRRLKKQYPTVFVMVVMLASYFLISMFGGVM 502
LSPFNMILGGIVVVLVFTGFVWAAHNKDILRRLKKQYPTVFVMVVMLASYFLISMFGGVM
Sbjct: 61 LSPFNMILGGIVVVLVFTGFVWAAHNKDILRRLKKQYPTVFVMVVMLASYFLISMFGGVM 120
Query: 503 VFVFGITFPLLLMFIHASXXXXXXXXXXENKIEGIGLKRTPMGIVLDALEQQEENISKFA 682
VFVFGITFPLLLMFIHAS ENKIEGIGLKRTPMGIVLDALEQQEENISKFA
Sbjct: 121 VFVFGITFPLLLMFIHASLRLRNLKNKLENKIEGIGLKRTPMGIVLDALEQQEENISKFA 180
Query: 683 DYISKVNE 706
DYISKVNE
Sbjct: 181 DYISKVNE 188
>ref|NP_001230809.1| PRA1 domain family, member 2 [Sus scrofa].
Length = 178
Score = 147 bits (371), Expect = 2e-35
Identities = 72/173 (41%), Positives = 107/173 (61%)
Frame = +2
Query: 146 DVNIAPLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISVVGFL 325
+V + PLRA DDF GS R A PD D +W +RV++NLLYYQTNYLV + +++ G++
Sbjct: 3 EVRLPPLRALDDFVLGSARLAAPDPCDPQRWCHRVINNLLYYQTNYLVCFGLGLALAGYV 62
Query: 326 SPFNMILGGIVVVLVFTGFVWAAHNKDILRRLKKQYPTVFVMVVMLASYFLISMFGGVMV 505
P + +L +VV + VWAA + +RR ++ +P ++ V+ S ++ GG
Sbjct: 63 RPLHTLLSALVVAVALGMLVWAAETRAAVRRCRRSHPAACLIAVLAVSLLVLWAAGGACT 122
Query: 506 FVFGITFPLLLMFIHASXXXXXXXXXXENKIEGIGLKRTPMGIVLDALEQQEE 664
F+ I P+LL+ +HAS ENKIE IGLKRTPMG++L+AL Q++E
Sbjct: 123 FLLSIAGPVLLILVHASLRLRNLKNKIENKIESIGLKRTPMGLLLEALGQEQE 175
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 40,934,006
Number of extensions: 1472296
Number of successful extensions: 2397
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2369
Number of HSP's successfully gapped: 2
Length of query: 667
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 561
Effective length of database: 8,704,850
Effective search space: 4883420850
Effective search space used: 4883420850
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PBL01_0057_D05
(2001 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 1639 0.0
>Sscrofa_Chr13
|| Length = 218635234
Score = 1639 bits (827), Expect = 0.0
Identities = 897/925 (96%), Gaps = 3/925 (0%)
Strand = Plus / Plus
Query: 537 tgatgtttatccacgcgtcgctgagactccggaacctcaagaacaaactggagaataaaa 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55667886 tgatgtttatccacgcgtcgctgagactccggaacctcaagaacaaactggagaataaaa 55667945
Query: 597 tagagggaatcggtctgaagaggacgcccatgggcattgtcctggatgccctagaacagc 656
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 55667946 tagagggaatcggtctgaagaggacacccatgggcattgtcctggatgccctagaacagc 55668005
Query: 657 aggaagaaaacatcagcaagttcgctgactatatcagtaaagtcaatgagtaaatggagc 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55668006 aggaagaaaacatcagcaagttcgctgactatatcagtaaagtcaatgagtaaatggagc 55668065
Query: 717 tgacctggcgatagggttgctgcagaaatcgacgtgcagtgtgcccttgtccagacctat 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55668066 tgacctggcgatagggttgctgcagaaatcgacgtgcagtgtgcccttgtccagacctat 55668125
Query: 777 tttccgtttgtgtttctgacgtaggaggttcctgcaccatccaaccatccgtggcagcgt 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55668126 tttccgtttgtgtttctgacgtaggaggttcctgcaccatccaaccatccgtggcagcgt 55668185
Query: 837 gcacgtagtggccatgctgttcacatctcggcttttacagagagcaggcctcagagactg 896
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 55668186 gcacgtagtggccatgctgttcacatctctgcttttacagagagcaggcctcagagactg 55668245
Query: 897 nnnnnnnccaccctcctattgtgtctgaagtttcaggtgtgtttatggaagctgatagga 956
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55668246 -aaaaaaccaccctcctattgtgtctgaagtttcaggtgtgtttatggaagctgatagga 55668304
Query: 957 aatggagcacacctannnnnnnnaaggggaatacaaataaaagaatcatggattgtatag 1016
||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 55668305 aatggagcacacctattttttttaaggggaatacaaataaaagaatcatggattgtatag 55668364
Query: 1017 caacaatacagtgatcttgtgggaaaaaattcaattgtaaaatattgaggcagtatgagt 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55668365 caacaatacagtgatcttgtgggaaaaaattcaattgtaaaatattgaggcagtatgagt 55668424
Query: 1077 aaatgaaaagactgttaaagtagatgatgtcatgcactagcctgttttaatctg--nnnn 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55668425 aaatgaaaagactgttaaagtagatgatgtcatgcactagcctgttttaatctgcccccc 55668484
Query: 1135 nnnatcctcctcctccaaaaaatttccttgttagaattataatgtgtagggtatatatta 1194
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55668485 cccatcctcctcctccaaaaaatttccttgttagaattataatgtgtagggtatatatta 55668544
Query: 1195 gttttgtttttattattacgcttttaaaatcaaagatgatctccatcactttgcctcctg 1254
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 55668545 gttttgtttttattattacgcttttaagatcaaagatgatctccatcactttgcctcctg 55668604
Query: 1255 tttgatgtgcagtggaagttggataaatcaatttctagtttgtttacaaagctagctgtt 1314
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 55668605 tttgatgtgcagtggaagttggataaatcagtttctagtttgtttacaaagctagctgtt 55668664
Query: 1315 tgtgagaatattttgtcaactttttgtccgtttttgaaaggctagtaatgtgtttgcact 1374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55668665 tgtgagaatattttgtcaactttttgtccgtttttgaaaggctagtaatgtgtttgcact 55668724
Query: 1375 agcaggcatttgttgcagactaaatgccatcttctttaaggaggttacagttctgtaacc 1434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55668725 agcaggcatttgttgcagactaaatgccatcttctttaaggaggttacagttctgtaacc 55668784
Query: 1435 tgtattattctcaatggtcttgttt 1459
|||||||||||||||||||||||||
Sbjct: 55668785 tgtattattctcaatggtcttgttt 55668809
Score = 626 bits (316), Expect = e-176
Identities = 316/316 (100%)
Strand = Plus / Plus
Query: 5 cttccttccactgcctactaaccacaaagccgactgcgccagggccgctgtcatctttca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55590454 cttccttccactgcctactaaccacaaagccgactgcgccagggccgctgtcatctttca 55590513
Query: 65 cctagctcagctgatcggttgccgccgccgccgctgccagattccagaagcaaagaacca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55590514 cctagctcagctgatcggttgccgccgccgccgctgccagattccagaagcaaagaacca 55590573
Query: 125 caagctggtaagatagacatggacgtgaatatcgctccgctccgcgcctgggacgatttc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55590574 caagctggtaagatagacatggacgtgaatatcgctccgctccgcgcctgggacgatttc 55590633
Query: 185 ttcccgggctctgatcgcttcgcccggccagactttagggacatttccaaatggaacaac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55590634 ttcccgggctctgatcgcttcgcccggccagactttagggacatttccaaatggaacaac 55590693
Query: 245 cgcgtggtgagcaacctgctctattatcagaccaactatctggtggtggctgccatgatg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55590694 cgcgtggtgagcaacctgctctattatcagaccaactatctggtggtggctgccatgatg 55590753
Query: 305 atttccgtcgtggggt 320
||||||||||||||||
Sbjct: 55590754 atttccgtcgtggggt 55590769
Score = 434 bits (219), Expect = e-119
Identities = 219/219 (100%)
Strand = Plus / Plus
Query: 318 ggttcctgagccccttcaacatgatccttggaggcattgtggtggtactggtattcacgg 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55664791 ggttcctgagccccttcaacatgatccttggaggcattgtggtggtactggtattcacgg 55664850
Query: 378 gctttgtgtgggcagcccacaataaagacattctccgccggctgaagaagcagtacccta 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55664851 gctttgtgtgggcagcccacaataaagacattctccgccggctgaagaagcagtacccta 55664910
Query: 438 cggtgtttgtcatggtggtcatgctggccagctacttcctcatatccatgtttgggggag 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55664911 cggtgtttgtcatggtggtcatgctggccagctacttcctcatatccatgtttgggggag 55664970
Query: 498 tcatggtctttgtgttcggcatcactttccctttgctgc 536
|||||||||||||||||||||||||||||||||||||||
Sbjct: 55664971 tcatggtctttgtgttcggcatcactttccctttgctgc 55665009
Score = 430 bits (217), Expect = e-117
Identities = 427/501 (85%), Gaps = 22/501 (4%)
Strand = Plus / Plus
Query: 134 aagatagacatggacgtgaatatcgctccgctccgcgcctgggacgatttcttcccgggc 193
|||||||||||||| ||||| | | ||| ||| ||||||||||| ||||||||||| |||
Sbjct: 194286473 aagatagacatggatgtgaacaccactctgctgcgcgcctgggaggatttcttcccaggc 194286532
Query: 194 tctgatcgcttcgcccggccagactttagggacatttccaaatggaacaaccgcgtggtg 253
||||| ||||| ||||| | ||| |||||||||||||||||||||||||| | |||||
Sbjct: 194286533 tctgactgcttcacccggtcggaccttagggacatttccaaatggaacaacttcatggtg 194286592
Query: 254 agcaacctgctctattatcagaccaactatctggtggtggctgccatgatgatttccgtc 313
||||||| ||| ||||| || |||||| |||||||||||||| ||||||||||| |||
Sbjct: 194286593 agcaacccgctgtatta---gagcaactacctggtggtggctgctatgatgatttctgtc 194286649
Query: 314 gtggggttcctgagccccttcaacatgatccttggaggcattgtggtggtactggtattc 373
||||||||| |||||| ||||||| ||||| ||||||||| ||||||| ||||
Sbjct: 194286650 atggggttccggagccctttcaacacgatccgtggaggcatcgtggtggggctgg----- 194286704
Query: 374 acgggctttgtgtgggcagcccacaataaagacattctccgccggctgaagaagcagtac 433
|||||||||||||||||||||||| ||| | | ||||||||| ||
Sbjct: 194286705 --------------ggcagcccacaataaagacattctttgccagataaagaagcaggac 194286750
Query: 434 cctacggtgtttgtcatggtggtcatgctggccagctacttcctcatatccatgtttggg 493
|| |||||||||| | ||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 194286751 cccacggtgtttgacgtggtggtcatgctggccagctacttcctcatatacgtgtttggg 194286810
Query: 494 ggagtcatggtctttgtgttcggcatcactttccctttgctgctgatgtttatccacgcg 553
||||||| |||||||| |||| ||||||||||||||||||||||| |||||||||||| |
Sbjct: 194286811 ggagtcacggtctttgcgttcagcatcactttccctttgctgctgctgtttatccacgtg 194286870
Query: 554 tcgctgagactccggaacctcaagaacaaactggagaataaaatagagggaatcggtctg 613
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 194286871 tcgctgagactctggaacctcaagaacaaactggagaataaaatggagggaatcggtatg 194286930
Query: 614 aagaggacgcccatgggcatt 634
| ||||| |||||||||||||
Sbjct: 194286931 aggaggatgcccatgggcatt 194286951
Score = 424 bits (214), Expect = e-116
Identities = 233/242 (96%)
Strand = Plus / Plus
Query: 1489 cttgagttctgtttctgttgcacagtttttcttgttctaaggnnnnnnnngatgtccacg 1548
|||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 55668841 cttgagttctgtttctgttgcacagtttttcttgttctaaggaaaaaaaagatgtccacg 55668900
Query: 1549 gtaaatgtttcccttttttctttattgtttagattttaactggaacattgagaaagaagg 1608
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 55668901 gtaaatgtttcccttttttctttattgtttagtttttaactggaacattgagaaagaagg 55668960
Query: 1609 aaacaaacgtgcattttactcattccttagggcagaaagaggacatgaagagctgatctt 1668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55668961 aaacaaacgtgcattttactcattccttagggcagaaagaggacatgaagagctgatctt 55669020
Query: 1669 ttgaaatctgaaaagcatctttagatgaccgagcaaaaaggctttttaaaaaatgggaac 1728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55669021 ttgaaatctgaaaagcatctttagatgaccgagcaaaaaggctttttaaaaaatgggaac 55669080
Query: 1729 ga 1730
||
Sbjct: 55669081 ga 55669082
Score = 218 bits (110), Expect = 9e-54
Identities = 137/146 (93%)
Strand = Plus / Plus
Query: 1302 aaagctagctgtttgtgagaatattttgtcaactttttgtccgtttttgaaaggctagta 1361
|||||||||| ||||| | |||||||||||||||||||||| || ||| ||||||| |||
Sbjct: 194286968 aaagctagctatttgttacaatattttgtcaactttttgtcagtctttaaaaggctggta 194287027
Query: 1362 atgtgtttgcactagcaggcatttgttgcagactaaatgccatcttctttaaggaggtta 1421
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 194287028 atgtgtttgtactagcaggcatttgttgcaaactaaatgccatcttctttaaggaggtta 194287087
Query: 1422 cagttctgtaacctgtattattctca 1447
||||||||||||||||||||||||||
Sbjct: 194287088 cagttctgtaacctgtattattctca 194287113
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 58,426,439
Number of extensions: 701
Number of successful extensions: 701
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 700
Number of HSP's successfully gapped: 11
Length of query: 2001
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1979
Effective length of database: 2,808,408,574
Effective search space: 5557840567946
Effective search space used: 5557840567946
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)