Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PST01_0067_C06
(2912 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_777170.1| 72 kDa type IV collagenase precursor [Bos tauru... 1301 0.0
Alignment gi|NP_777169.1| matrix metalloproteinase-9 precursor [Bos tauru... 525 e-149
Alignment gi|NP_001193569.1| macrophage metalloelastase [Bos taurus]. 216 7e-56
Alignment gi|NP_776814.1| collagenase 3 precursor [Bos taurus]. 213 6e-55
Alignment gi|NP_776537.1| interstitial collagenase precursor [Bos taurus]. 212 2e-54
Alignment gi|NP_001193566.1| stromelysin-1 [Bos taurus]. 211 2e-54
Alignment gi|XP_002692352.1| PREDICTED: matrix metallopeptidase 24 (membr... 200 7e-51
Alignment gi|NP_776816.1| matrix metalloproteinase-20 precursor [Bos taur... 187 3e-47
Alignment gi|NP_001068598.1| matrilysin [Bos taurus]. 186 8e-47
Alignment gi|XP_002692980.1| PREDICTED: matrix metalloproteinase 8 prepro... 186 1e-46
>ref|NP_777170.1| 72 kDa type IV collagenase precursor [Bos taurus].
Length = 661
Score = 1301 bits (3367), Expect = 0.0
Identities = 608/661 (91%), Positives = 617/661 (93%)
Frame = +2
Query: 116 MTEARXXXXXXXXXXXXXCVLGCLXXXXXXXXSPIIKFPGDVAPKTDKELAVQYLNTFYG 295
MTEAR C LGCL SPIIKFPGDVAPKTDKELAVQYLNTFYG
Sbjct: 1 MTEARVSRGALAALLRALCALGCLLGRAAAAPSPIIKFPGDVAPKTDKELAVQYLNTFYG 60
Query: 296 CPKESCNLFVLKDTLKKMQKFFGLPQTGELDQSTIETMRKPRCGNPDVANYNFFPRKPKW 475
CPKESCNLFVLKDTLKKMQKFFGLPQTGELDQSTIETMRKPRCGNPDVANYNFFPRKPKW
Sbjct: 61 CPKESCNLFVLKDTLKKMQKFFGLPQTGELDQSTIETMRKPRCGNPDVANYNFFPRKPKW 120
Query: 476 DKTQITYRIIGYTPDLDPETVDDAFARAFRVWSDVTPLRFSRIHDGEADIMINFGRWEHG 655
DK QITYRIIGYTPDLDP+TVDDAFARAF+VWSDVTPLRFSRIHDGEADIMINFGRWEHG
Sbjct: 121 DKNQITYRIIGYTPDLDPQTVDDAFARAFQVWSDVTPLRFSRIHDGEADIMINFGRWEHG 180
Query: 656 DGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWTLGEGQVVRVKYGNADGEYCKFPFSF 835
DGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDEL TLGEGQVVRVKYGNADGEYCKFPF F
Sbjct: 181 DGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELRTLGEGQVVRVKYGNADGEYCKFPFRF 240
Query: 836 NGKEYNSCTDTGRSDGFLWCSTTYNFDKDGKYGFCPHEALFTMGGNADGQPCKFPFRFQG 1015
NGKEY SCTDTGRSDGFLWCSTTYNFDKDGKYGFCPHEALFTMGGNADGQPCKFPFRFQG
Sbjct: 241 NGKEYTSCTDTGRSDGFLWCSTTYNFDKDGKYGFCPHEALFTMGGNADGQPCKFPFRFQG 300
Query: 1016 TSYNSCTTEGRTDGYRWCGTTEDYDRDKKYGFCPETAMSTVGGNSEGAPCVFPFTFLGNK 1195
TSY+SCTTEGRTDGYRWCGTTEDYDRDK+YGFCPETAMSTVGGNSEGAPCV PFTFLGNK
Sbjct: 301 TSYDSCTTEGRTDGYRWCGTTEDYDRDKEYGFCPETAMSTVGGNSEGAPCVLPFTFLGNK 360
Query: 1196 HESCTSAGRSDGKLWCATTANYDDDRKWGFCPDQGYSLFLVAAHEFGHAMGLEHSEDPGA 1375
HESCTSAGRSDGKLWCATT+NYDDDRKWGFCPDQGYSLFLVAAHEFGHAMGLEHS+DPGA
Sbjct: 361 HESCTSAGRSDGKLWCATTSNYDDDRKWGFCPDQGYSLFLVAAHEFGHAMGLEHSQDPGA 420
Query: 1376 LMAPIYTYTKNFRLSHDDVKGIQELYGASPDIDXXXXXXXXXXXXXXEICKQDIVFDGIS 1555
LMAPIYTYTKNFRLSHDD++GIQELYGASPDID E+CKQDIVFDGIS
Sbjct: 421 LMAPIYTYTKNFRLSHDDIQGIQELYGASPDIDTGTGPTPTLGPVTPELCKQDIVFDGIS 480
Query: 1556 QIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAGNE 1735
QIRGEIFFFKDRFIWRTVTPRDKP GPLLVATFWPELPEKIDAVYE PQEEKAVFFAGNE
Sbjct: 481 QIRGEIFFFKDRFIWRTVTPRDKPTGPLLVATFWPELPEKIDAVYEDPQEEKAVFFAGNE 540
Query: 1736 YWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMD 1915
YWVYSASTLERGYPKPLTSLGLPP VQKVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMD
Sbjct: 541 YWVYSASTLERGYPKPLTSLGLPPGVQKVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMD 600
Query: 1916 PGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSLKSVKFGSIKSDWLG 2095
PGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSLKSVKFGSIKSDWLG
Sbjct: 601 PGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSLKSVKFGSIKSDWLG 660
Query: 2096 C 2098
C
Sbjct: 661 C 661
>ref|NP_777169.1| matrix metalloproteinase-9 precursor [Bos taurus].
Length = 712
Score = 525 bits (1352), Expect = e-149
Identities = 272/589 (46%), Positives = 355/589 (60%), Gaps = 16/589 (2%)
Frame = +2
Query: 173 VLGCLXXXXXXXXSPIIKFPGDVAPK-TDKELAVQYLNTFYGCP--KESCNLFVLKDTLK 343
VL C ++ FPG+ T+++LA +YL + P + S + L+ L
Sbjct: 13 VLACCSAVPRRRQPTVVVFPGEPRTNLTNRQLAEEYLYRYGYTPGAELSEDGQSLQRALL 72
Query: 344 KMQKFFGLPQTGELDQSTIETMRKPRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDL 523
+ Q+ LP+TGELD +T+ MR PRCG PDV + F + KW ITY I Y+ DL
Sbjct: 73 RFQRRLSLPETGELDSTTLNAMRAPRCGVPDVGRFQTFEGELKWHHHNITYWIQNYSEDL 132
Query: 524 DPETVDDAFARAFRVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAF 703
+DDAFARAF +WS VTPL F+R++ EADI+I FG EHGDGYPFDGK+GLLAHAF
Sbjct: 133 PRAVIDDAFARAFALWSAVTPLTFTRVYGPEADIVIQFGVREHGDGYPFDGKNGLLAHAF 192
Query: 704 APGPGVGGDSHFDDDELWTLGEGQVVRVKYGNADGEYCKFPFSFNGKEYNSCTDTGRSDG 883
PG G+ GD+HFDD+ELW+LG+G V+ +GNA G C FPF+F G+ Y++CT GRSD
Sbjct: 193 PPGKGIQGDAHFDDEELWSLGKGVVIPTYFGNAKGAACHFPFTFEGRSYSACTTDGRSDD 252
Query: 884 FLWCSTTYNFDKDGKYGFCPHEALFTMGGNADGQPCKFPFRFQGTSYNSCTTEGRTDGYR 1063
LWCSTT ++D D ++GFCP E L+T GNADG+PC FPF FQG +Y++CT++GR+DGYR
Sbjct: 253 MLWCSTTADYDADRQFGFCPSERLYTQDGNADGKPCVFPFTFQGRTYSACTSDGRSDGYR 312
Query: 1064 WCGTTEDYDRDKKYGFCPETAMSTV-GGNSEGAPCVFPFTFLGNKHESCTSAGRSDGKLW 1240
WC TT +YD+DK YGFCP +TV GGN+ G CVFPFTFLG ++ +CT GR+DG LW
Sbjct: 313 WCATTANYDQDKLYGFCPTRVDATVTGGNAAGELCVFPFTFLGKEYSACTREGRNDGHLW 372
Query: 1241 CATTANYDDDRKWGFCPDQGYSLFLVAAHEFGHAMGLEHSEDPGALMAPIYTYTKNFRLS 1420
CATT+N+D D+KWGFCPDQGYSLFLVAAHEFGHA+GL+H+ P ALM P+Y +T+ L
Sbjct: 373 CATTSNFDKDKKWGFCPDQGYSLFLVAAHEFGHALGLDHTSVPEALMYPMYRFTEEHPLH 432
Query: 1421 HDDVKGIQELYGASPDIDXXXXXXXXXXXXXXE-ICKQDIVFDGISQIRGEIFFFKDRFI 1597
DDV+GIQ LYG P+ + + + G R +
Sbjct: 433 RDDVQGIQHLYGPRPEPEPRPPTTTTTTTTEPQPTAPPTVCVTGPPTARPS----EGPTT 488
Query: 1598 WRTVTPRDKP-----MGPLLVATFWPELPEKI------DAVYEAPQEEKAVFFAGNEYWV 1744
T P P GP T P+ E + DA+ E + FF +YW
Sbjct: 489 GPTGPPAAGPTGPPTAGPSAAPTESPDPAEDVCNVDIFDAIAEI--RNRLHFFKAGKYWR 546
Query: 1745 YSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSKNKKTYIFAGDKFWRY 1891
S R L P +K+D+AF KK + F+G + W Y
Sbjct: 547 LSEGGGRRVQGPFLVKSKWPALPRKLDSAFEDPLTKKIFFFSGRQVWVY 595
Score = 99.8 bits (247), Expect = 1e-20
Identities = 62/197 (31%), Positives = 104/197 (52%), Gaps = 3/197 (1%)
Frame = +2
Query: 1517 EICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPM-GPLLVATFWPELPEKIDAVYE 1693
++C DI FD I++IR + FFK WR + + GP LV + WP LP K+D+ +E
Sbjct: 519 DVCNVDI-FDAIAEIRNRLHFFKAGKYWRLSEGGGRRVQGPFLVKSKWPALPRKLDSAFE 577
Query: 1694 APQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSKNKKTYIFAG 1873
P +K FF+G + WVY+ ++L P+ L LGL P+V +V A + K +F+G
Sbjct: 578 DPLTKKIFFFSGRQVWVYTGASLLG--PRRLDKLGLGPEVAQVTGALPRPEG-KVLLFSG 634
Query: 1874 DKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQS- 2050
FWR++ +K+DP + + +P + + Q +YF + +Y ++ +Q+
Sbjct: 635 QSFWRFDVKTQKVDPQSVTPVDQMFPGVPISTHDIFQYQ--EKAYFCQDHFYWRVSSQNE 692
Query: 2051 LKSVKF-GSIKSDWLGC 2098
+ V + G + D L C
Sbjct: 693 VNQVDYVGYVTFDLLKC 709
>ref|NP_001193569.1| macrophage metalloelastase [Bos taurus].
Length = 471
Score = 216 bits (551), Expect = 7e-56
Identities = 104/192 (54%), Positives = 131/192 (68%), Gaps = 7/192 (3%)
Frame = +2
Query: 212 SPIIKFPGDVAPKTDKELAVQYLNTFYGCPKESC-------NLFVLKDTLKKMQKFFGLP 370
+P+ +P + D A +YL FYG E+ N V++D +++MQ+FFGL
Sbjct: 18 APLTDYPSP--EENDVAFAQRYLANFYGLEMETTPMTKMKVNRNVMEDKIQEMQQFFGLK 75
Query: 371 QTGELDQSTIETMRKPRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAF 550
TG+LD ST++ M +PRCG PDV N+ FP +P W K ITYRI YTPDL PE VDDAF
Sbjct: 76 VTGQLDTSTLDMMHRPRCGVPDVKNFQVFPGRPAWKKRLITYRINNYTPDLKPEDVDDAF 135
Query: 551 ARAFRVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGD 730
+AF+VWSDVTPL+F ++HD EADIMI F EHGD Y FDG G+LAHAFAPG G+GGD
Sbjct: 136 QKAFQVWSDVTPLKFRKVHDNEADIMIRFAFREHGDAYSFDGPWGILAHAFAPGAGLGGD 195
Query: 731 SHFDDDELWTLG 766
+HFD+ E WT G
Sbjct: 196 AHFDEAETWTKG 207
Score = 173 bits (439), Expect = 7e-43
Identities = 106/287 (36%), Positives = 152/287 (52%), Gaps = 5/287 (1%)
Frame = +2
Query: 1253 ANYDDDRKWGFCPDQGYSLFLVAAHEFGHAMGLEHSEDPGALMAPIYTYT--KNFRLSHD 1426
A++D+ W +G +LFLVA HE GH++GL+HS D A+M P Y + FRLS D
Sbjct: 196 AHFDEAETWTK-GHKGPNLFLVAVHEIGHSLGLDHSSDTRAIMFPSYRDVDYRRFRLSTD 254
Query: 1427 DVKGIQELYGASPDIDXXXXXXXXXXXXXXEICKQDIVFDGISQIRGEIFFFKDRFIWRT 1606
D++GIQ LYG PD C ++ FD ++ + +IFFFKD F W
Sbjct: 255 DIRGIQSLYGR-PD---KHQVPSNPDNTNPAACDPNMSFDAVTTVGDKIFFFKDWFFWWK 310
Query: 1607 VTPRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPL 1786
+ K L+++ P LP I A YE F ++YW+ + + YPK +
Sbjct: 311 LAESPKT-SVSLISSLGPNLPSYIQAAYEIADRSHVFLFKDDKYWLMNNLKPQLNYPKSI 369
Query: 1787 TSLGLPPDVQKVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDN 1966
SLG P V+K+DAA KTY F G+KFWRY+E ++ +DPG+PKLI + I
Sbjct: 370 HSLGFPSSVKKIDAAVFNPLFYKTYFFVGNKFWRYDERRQFLDPGYPKLITTYFPGIGPK 429
Query: 1967 LDAVVDLQGGGHSYFFKGAYYLK---LENQSLKSVKFGSIKSDWLGC 2098
+DAV H YFF+G+ LK L + ++S+K ++ LGC
Sbjct: 430 IDAV--FYYNRHYYFFQGSILLKYNVLAQRVVESLKSSTV----LGC 470
>ref|NP_776814.1| collagenase 3 precursor [Bos taurus].
Length = 471
Score = 213 bits (543), Expect = 6e-55
Identities = 102/175 (58%), Positives = 123/175 (70%), Gaps = 6/175 (3%)
Frame = +2
Query: 254 DKELAVQYLNTFY------GCPKESCNLFVLKDTLKKMQKFFGLPQTGELDQSTIETMRK 415
D + A YL ++Y G K++ V+ D L++MQ FFGL TG LD +T++ M+K
Sbjct: 35 DFQFAESYLKSYYYPQNPAGILKKTAASSVI-DRLREMQSFFGLEVTGRLDDNTLDIMKK 93
Query: 416 PRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFRVWSDVTPLRF 595
PRCG PDV YN FPR KW K +TYRI+ YTPDL V+ AF +AF+VWSDVTPL F
Sbjct: 94 PRCGVPDVGEYNVFPRTLKWSKMNLTYRIVNYTPDLTHSEVEKAFRKAFKVWSDVTPLNF 153
Query: 596 SRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWT 760
+RIH+G ADIMI+FG EHGD YPFDG GLLAHAF PGP GGD+HFDDDE WT
Sbjct: 154 TRIHNGTADIMISFGTKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT 208
Score = 202 bits (515), Expect = 1e-51
Identities = 106/258 (41%), Positives = 147/258 (56%), Gaps = 2/258 (0%)
Frame = +2
Query: 1253 ANYDDDRKWGFCPDQGYSLFLVAAHEFGHAMGLEHSEDPGALMAPIYTYT--KNFRLSHD 1426
A++DDD W +GY+LFLVAAHEFGH++GL+HS+DPGALM PIYTYT +F L D
Sbjct: 199 AHFDDDETWT-SSSKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDD 257
Query: 1427 DVKGIQELYGASPDIDXXXXXXXXXXXXXXEICKQDIVFDGISQIRGEIFFFKDRFIWRT 1606
DV+GIQ LYG + + C + D I+ +RGE FKDRF WR
Sbjct: 258 DVQGIQSLYGPGDE------DPYSKHPKTPDKCDPSLSLDAITSLRGETLIFKDRFFWR- 310
Query: 1607 VTPRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPL 1786
+ P+ L +F PELP +IDA YE P + F G ++W S + YPK +
Sbjct: 311 LHPQQVEAELFLTKSFGPELPNRIDAAYEHPSHDLIFIFRGRKFWALSGYDILEDYPKKI 370
Query: 1787 TSLGLPPDVQKVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDN 1966
+ LG P V+K+ AA ++ + KT F+ ++ W Y++ MD +P+LI + + I D
Sbjct: 371 SELGFPKHVKKISAALHFEDSGKTLFFSENQVWSYDDTNHVMDKDYPRLIEEVFPGIGDK 430
Query: 1967 LDAVVDLQGGGHSYFFKG 2020
+DAV Q G+ YFF G
Sbjct: 431 VDAV--YQKNGYIYFFNG 446
>ref|NP_776537.1| interstitial collagenase precursor [Bos taurus].
Length = 469
Score = 212 bits (539), Expect = 2e-54
Identities = 114/283 (40%), Positives = 159/283 (56%), Gaps = 1/283 (0%)
Frame = +2
Query: 1253 ANYDDDRKWGFCPDQGYSLFLVAAHEFGHAMGLEHSEDPGALMAPIYTYTKNFRLSHDDV 1432
A++DDD +W Q Y+L+ VAAHEFGH++GL HS D GALM P YT++ + +LS DD+
Sbjct: 195 AHFDDD-EWWTSNFQDYNLYRVAAHEFGHSLGLAHSTDIGALMYPSYTFSGDVQLSQDDI 253
Query: 1433 KGIQELYGASPDIDXXXXXXXXXXXXXXEICKQDIVFDGISQIRGEIFFFKDRFIWRTVT 1612
GIQ +YG S + E+C + FD I+ IRGE+ FFKDRF RT
Sbjct: 254 DGIQAIYGPSQN------PTQPVGPQTPEVCDSKLTFDAITTIRGEVMFFKDRFYMRT-N 306
Query: 1613 PRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPL-T 1789
P + ++ FWP+LP + A YE ++ FF GN+YW + RGYP+ +
Sbjct: 307 PLYPEVELNFISVFWPQLPNGLQAAYEVADRDEVRFFKGNKYWAVKGQDVLRGYPRDIYR 366
Query: 1790 SLGLPPDVQKVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNL 1969
S G P V+ +DAA + KTY F +K WRY+E K+ MD G+PK+IA+ + I + +
Sbjct: 367 SFGFPRTVKSIDAAVSEEDTGKTYFFVANKCWRYDEYKQSMDAGYPKMIAEDFPGIGNKV 426
Query: 1970 DAVVDLQGGGHSYFFKGAYYLKLENQSLKSVKFGSIKSDWLGC 2098
DAV Q GG YFF G K + Q+ + + S W C
Sbjct: 427 DAV--FQKGGFFYFFHGRRQYKFDPQTKRILTLLKANS-WFNC 466
Score = 180 bits (457), Expect = 6e-45
Identities = 87/175 (49%), Positives = 114/175 (65%), Gaps = 6/175 (3%)
Frame = +2
Query: 254 DKELAVQYLNTFYGCP------KESCNLFVLKDTLKKMQKFFGLPQTGELDQSTIETMRK 415
D E +YL +Y + N ++ + LK+MQKFFGL TG+ D T+ M++
Sbjct: 30 DVETVKKYLENYYNLNSNGKKVERQRNGGLITEKLKQMQKFFGLRVTGKPDAETLNVMKQ 89
Query: 416 PRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFRVWSDVTPLRF 595
PRCG PDVA + P K W+ T +TYRI YTPDL VD A +AF++WS+VTPL F
Sbjct: 90 PRCGVPDVAPFVLTPGKSCWENTNLTYRIENYTPDLSRADVDQAIEKAFQLWSNVTPLTF 149
Query: 596 SRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWT 760
+++ +G+ADIMI+F R +H D PFDG G LAHAF PG G+GGD+HFDDDE WT
Sbjct: 150 TKVSEGQADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGAGIGGDAHFDDDEWWT 204
>ref|NP_001193566.1| stromelysin-1 [Bos taurus].
Length = 477
Score = 211 bits (538), Expect = 2e-54
Identities = 114/288 (39%), Positives = 163/288 (56%), Gaps = 6/288 (2%)
Frame = +2
Query: 1253 ANYDDDRKWGFCPDQGYSLFLVAAHEFGHAMGLEHSEDPGALMAPIY---TYTKNFRLSH 1423
A++DDD +W G +LFLVAAHE GH++GL+HS + ALM P+Y T FRLS
Sbjct: 195 AHFDDDEQWTK-DTSGINLFLVAAHELGHSLGLQHSTEREALMYPVYDPRTDLTRFRLSQ 253
Query: 1424 DDVKGIQELYGA---SPDIDXXXXXXXXXXXXXXEICKQDIVFDGISQIRGEIFFFKDRF 1594
DDV GIQ LYG+ SP+ C + FD +S +RGEI FFK R
Sbjct: 254 DDVDGIQFLYGSPPVSPNDPVVPTESVPPEPGTPAACDPALSFDAVSTLRGEILFFKGRH 313
Query: 1595 IWRTVTPRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGY 1774
WR +P L +++FWP LP IDA YE ++ F GN++W + ++ GY
Sbjct: 314 FWRKSFRTFEPEFHL-ISSFWPSLPSGIDAAYEVTSKDTVFIFKGNQFWAIRGNEMQAGY 372
Query: 1775 PKPLTSLGLPPDVQKVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNA 1954
P+ + +LG P V+K+DAAF+ + KKTY FA DK+WR++E ++ M+PGFPK I + +
Sbjct: 373 PRGIHTLGFPSTVRKIDAAFSDKEKKKTYFFAEDKYWRFDEKRQSMEPGFPKQIVEDFPG 432
Query: 1955 IPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSLKSVKFGSIKSDWLGC 2098
+ +DAV ++ G YFF G+ + + + K V + WL C
Sbjct: 433 VESEVDAVFEV--FGFYYFFSGSSQFEFD-PNAKKVTHVLKSNSWLNC 477
Score = 188 bits (477), Expect = 3e-47
Identities = 91/173 (52%), Positives = 113/173 (65%), Gaps = 6/173 (3%)
Frame = +2
Query: 260 ELAVQYLNTFYGCPKESCNLFVLKDT------LKKMQKFFGLPQTGELDQSTIETMRKPR 421
EL QYL +Y K++ KD+ +++MQKF GL TG+LD T+E +RKPR
Sbjct: 32 ELVQQYLENYYNLAKDTKQFVRRKDSSPVVQKIQEMQKFLGLEVTGKLDSDTLEVIRKPR 91
Query: 422 CGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFRVWSDVTPLRFSR 601
CG PDV ++ FP PKW KT +TYRI+ YT DL + VD A +A VW + TPL FSR
Sbjct: 92 CGIPDVGFFSTFPGSPKWRKTHLTYRIVNYTKDLPRDAVDSAIEKALTVWEEATPLTFSR 151
Query: 602 IHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWT 760
I++GEADIMI F EHGD PFDG +LAHA+ PG G GD+HFDDDE WT
Sbjct: 152 IYEGEADIMIIFAIREHGDFLPFDGPGKVLAHAYPPGSGFYGDAHFDDDEQWT 204
>ref|XP_002692352.1| PREDICTED: matrix metallopeptidase 24 (membrane-inserted) [Bos
taurus].
Length = 596
Score = 200 bits (508), Expect = 7e-51
Identities = 119/318 (37%), Positives = 162/318 (50%), Gaps = 37/318 (11%)
Frame = +2
Query: 1256 NYDDDRKW--GFCPDQGYSLFLVAAHEFGHAMGLEHSEDPGALMAPIYTY--TKNFRLSH 1423
++D D W G G LFLVA HE GHA+GLEHS DP A+MAP Y Y T NF+L
Sbjct: 208 HFDSDEPWTLGNANHDGNDLFLVAVHELGHALGLEHSNDPSAIMAPFYQYMETHNFKLPQ 267
Query: 1424 DDVKGIQELYGAS----------PDIDXXXXXXXXXXXXXXE------------------ 1519
DD++GIQ++YG P + +
Sbjct: 268 DDLQGIQKIYGPPAEPLEPTRPLPTLPVRRIHSPSERKHERQPRPPRPPLGDRPATPGAK 327
Query: 1520 --ICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYE 1693
IC D F+ ++ RGE+F FKDR+ WR R + P+ + FW LP +IDA YE
Sbjct: 328 PNIC--DGNFNTVALFRGEMFVFKDRWFWRLRNNRVQEGYPMQIEQFWKGLPARIDAAYE 385
Query: 1694 APQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSKNKKTYIFAG 1873
+ + VFF G++YWV+ T+E GYP L LG + +D A W KTY F G
Sbjct: 386 RA-DGRFVFFKGDKYWVFKEVTVEPGYPHSLGELGSCLPREGIDTALRWEPVGKTYFFKG 444
Query: 1874 DKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSL 2053
+++WRY+E ++ DPG+PK I W IP + G ++YF+KG Y K +NQ L
Sbjct: 445 ERYWRYSEERRATDPGYPKPIT-VWKGIPQAPQGAFISKEGYYTYFYKGRDYWKFDNQKL 503
Query: 2054 KSVKFG---SIKSDWLGC 2098
SV+ G +I DW+GC
Sbjct: 504 -SVEPGYPRNILRDWMGC 520
Score = 145 bits (367), Expect = 2e-34
Identities = 78/161 (48%), Positives = 96/161 (59%), Gaps = 14/161 (8%)
Frame = +2
Query: 326 LKDTLKKMQKFFGLPQTGELDQSTIETMRKPRCGNPDVANYNFFPRKP-------KWDKT 484
L+ + MQ+F+G+P TG LDQ+TIE M+KPRCG PD + + R KW +
Sbjct: 58 LQSAVATMQQFYGIPVTGVLDQTTIEWMKKPRCGVPDHPHLSRRRRHKRYALTGQKWRQK 117
Query: 485 QITYRIIGYTPDLDPETVDDAFARAFRVWSDVTPLRFSRI--HD-----GEADIMINFGR 643
ITY I YTP + A +AF VW VTPL F + H+ EADIMI F
Sbjct: 118 HITYSIHNYTPKVGELDTRKAIRQAFDVWQKVTPLTFEEVPYHEIKSDRKEADIMIFFAS 177
Query: 644 WEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWTLG 766
HGD PFDG+ G LAHA+ PGPG+GGD+HFD DE WTLG
Sbjct: 178 GFHGDSSPFDGEGGFLAHAYFPGPGIGGDTHFDSDEPWTLG 218
>ref|NP_776816.1| matrix metalloproteinase-20 precursor [Bos taurus].
Length = 481
Score = 187 bits (476), Expect = 3e-47
Identities = 95/187 (50%), Positives = 123/187 (65%), Gaps = 12/187 (6%)
Frame = +2
Query: 242 APKTDKE---LAVQYLNTFY---GCPK------ESCNLFVLKDTLKKMQKFFGLPQTGEL 385
+P+T + LA YL+ +Y G P+ N V K +K++Q+FFGL TG+L
Sbjct: 28 SPRTSRNNYRLAQAYLDKYYTKKGGPQIGEMVARGGNSTVKK--IKELQEFFGLRVTGKL 85
Query: 386 DQSTIETMRKPRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFR 565
D++T++ +++PRCG PDVANY FP +PKW K +TYRI YTP + P VD A A R
Sbjct: 86 DRATMDVIKRPRCGVPDVANYRLFPGEPKWKKNTLTYRISKYTPSMTPAEVDRAMEMALR 145
Query: 566 VWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDD 745
WS PL F RI+ GEADIMI+F +HGD YPFDG G LAHAFAPG G+GGD+HFD+
Sbjct: 146 AWSSAVPLNFVRINAGEADIMISFETGDHGDSYPFDGPRGTLAHAFAPGEGLGGDTHFDN 205
Query: 746 DELWTLG 766
E WT+G
Sbjct: 206 AEKWTMG 212
Score = 177 bits (449), Expect = 5e-44
Identities = 98/285 (34%), Positives = 147/285 (51%), Gaps = 4/285 (1%)
Frame = +2
Query: 1256 NYDDDRKWGFCPDQGYSLFLVAAHEFGHAMGLEHSEDPGALMAPIYTYTK--NFRLSHDD 1429
++D+ KW + G++LF VAAHEFGHA+GL HS DP ALM P Y Y FRL DD
Sbjct: 202 HFDNAEKWTMGTN-GFNLFTVAAHEFGHALGLAHSTDPSALMFPTYKYQNPYGFRLPKDD 260
Query: 1430 VKGIQELYGASPDIDXXXXXXXXXXXXXX--EICKQDIVFDGISQIRGEIFFFKDRFIWR 1603
VKGIQ LYG ++C ++ FD ++ + E+ F+DR WR
Sbjct: 261 VKGIQALYGPRRAFSGKPTAPHGPPHNPSIPDLCDSNLSFDAVTMLGKELLLFRDRIFWR 320
Query: 1604 TVTPRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKP 1783
+ P + + +P+L +DA YE + A FF G YW+ ++ G P+
Sbjct: 321 RQVHLMSGIRPSTITSSFPQLMSNVDAAYEVAERGTAYFFKGPHYWITRGFQMQ-GPPRT 379
Query: 1784 LTSLGLPPDVQKVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPD 1963
+ G P VQ++DAA +KT F GD+++ Y+E K+KM+ +PK + ++ +
Sbjct: 380 IYDFGFPRYVQRIDAAVYLKDAQKTLFFVGDEYYSYDERKRKMEKDYPKSTEEEFSGVNG 439
Query: 1964 NLDAVVDLQGGGHSYFFKGAYYLKLENQSLKSVKFGSIKSDWLGC 2098
+DA V+L G+ YFF G K + + + V S W+GC
Sbjct: 440 QIDAAVEL--NGYIYFFSGPKAYKSDTEK-EDVVSELKSSSWIGC 481
>ref|NP_001068598.1| matrilysin [Bos taurus].
Length = 267
Score = 186 bits (473), Expect = 8e-47
Identities = 93/178 (52%), Positives = 111/178 (62%)
Frame = +2
Query: 260 ELAVQYLNTFYGCPKESCNLFVLKDTLKKMQKFFGLPQTGELDQSTIETMRKPRCGNPDV 439
+LA YL FY + N L+ LK+M+ FF LP TG L IE M KPR G PDV
Sbjct: 33 QLAQDYLKRFYSSDSKIKNANSLEVRLKRMEGFFHLPITGILSPRIIEIMEKPRSGVPDV 92
Query: 440 ANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFRVWSDVTPLRFSRIHDGEA 619
A ++ FP PKW +TYRI+ YT DL TV+ A+AF++WS+ PL F R+ G A
Sbjct: 93 AEFSLFPNHPKWTSKVVTYRIMSYTSDLPHITVNQLVAKAFKIWSEAIPLTFKRLRWGTA 152
Query: 620 DIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWTLGEGQVVRVKY 793
DIMI F R HGD YPFDG LAHAFAPGPG+GGD+HFD+DE WT G G V Y
Sbjct: 153 DIMIGFARRAHGDPYPFDGPGATLAHAFAPGPGLGGDAHFDEDERWTDGIGIGVNFLY 210
Score = 73.6 bits (179), Expect = 1e-12
Identities = 35/74 (47%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Frame = +2
Query: 1253 ANYDDDRKWGFCPDQGYSLFLVAAHEFGHAMGLEHSEDPGALMAPIYTY--TKNFRLSHD 1426
A++D+D +W G + VA HE GH++GL HS DP A+M P Y+ +KNF+LS D
Sbjct: 190 AHFDEDERWTDGIGIGVNFLYVATHELGHSLGLSHSSDPNAVMYPTYSKEDSKNFKLSQD 249
Query: 1427 DVKGIQELYGASPD 1468
D+ GIQ LYG D
Sbjct: 250 DINGIQLLYGKRND 263
>ref|XP_002692980.1| PREDICTED: matrix metalloproteinase 8 preproprotein-like [Bos
taurus].
Length = 494
Score = 186 bits (472), Expect = 1e-46
Identities = 87/175 (49%), Positives = 116/175 (66%), Gaps = 6/175 (3%)
Frame = +2
Query: 254 DKELAVQYLNTFYGCPK------ESCNLFVLKDTLKKMQKFFGLPQTGELDQSTIETMRK 415
++ + YL FY P+ V+ +TLK+MQ+FFGL TG+ ++ T+E MRK
Sbjct: 32 NRNIVQNYLEKFYQLPRFKYKSERKSKTNVIVETLKRMQQFFGLNVTGKPNEETLEMMRK 91
Query: 416 PRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFRVWSDVTPLRF 595
PRCG PD ++ P PKW+KT++TYRI+ YTP+L V+ AF+VWS V+PL F
Sbjct: 92 PRCGVPDSGSFMRTPGNPKWEKTKLTYRIVNYTPNLTEMDVEAIIEEAFKVWSKVSPLTF 151
Query: 596 SRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWT 760
+R D EADI I+F + +HGD PFDG DG+LAHAF PGPG+GGD HFD +E WT
Sbjct: 152 NRTLDEEADIQISFAQRDHGDNSPFDGPDGILAHAFQPGPGIGGDVHFDAEETWT 206
Score = 184 bits (467), Expect = 4e-46
Identities = 99/283 (34%), Positives = 148/283 (52%), Gaps = 2/283 (0%)
Frame = +2
Query: 1256 NYDDDRKWGFCPDQGYSLFLVAAHEFGHAMGLEHSEDPGALMAPIYTYT--KNFRLSHDD 1429
++D + W + Y+LF VAAHEFGH++GL HS DPGALM P Y + ++ L DD
Sbjct: 198 HFDAEETWTKT-SENYNLFPVAAHEFGHSLGLAHSSDPGALMYPNYAFIDPSSYSLHQDD 256
Query: 1430 VKGIQELYGASPDIDXXXXXXXXXXXXXXEICKQDIVFDGISQIRGEIFFFKDRFIWRTV 1609
+ GIQ +YG S + C + FD ++ +RGEI FFKD+++WR
Sbjct: 257 INGIQAIYGPSSN------PVQPTGPTTPTACDPRLTFDAVTTLRGEILFFKDKYVWRK- 309
Query: 1610 TPRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPLT 1789
PR + ++ +WP LP I A YE + F G +YW S ++GYP+ ++
Sbjct: 310 HPRLRMAEFNFISLYWPSLPNGIHAAYEDFDRDLIFIFKGTQYWALSGYDTQQGYPRHIS 369
Query: 1790 SLGLPPDVQKVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNL 1969
S G P VQ +DAA ++ +KTY F D+FW Y++ + M+PG+P+ IA + I +
Sbjct: 370 SYGFPSSVQAIDAAVSY--RRKTYFFVNDQFWSYDDQSQSMEPGYPQSIASFFPGIESRV 427
Query: 1970 DAVVDLQGGGHSYFFKGAYYLKLENQSLKSVKFGSIKSDWLGC 2098
DAV Q FF G Y + + + + + WL C
Sbjct: 428 DAV--FQENSLFLFFSGPRYYAFDFHARRVTRVDR-SNTWLNC 467
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 119,084,102
Number of extensions: 3629445
Number of successful extensions: 16532
Number of sequences better than 1.0e-05: 46
Number of HSP's gapped: 16208
Number of HSP's successfully gapped: 109
Length of query: 970
Length of database: 17,681,374
Length adjustment: 112
Effective length of query: 858
Effective length of database: 13,975,518
Effective search space: 11990994444
Effective search space used: 11990994444
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA PST01_0067_C06
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PST01_0067_C06
(2912 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004521.1| 72 kDa type IV collagenase isoform a preproprot... 1303 0.0
Alignment gi|NP_001121363.1| 72 kDa type IV collagenase isoform b [Homo s... 1254 0.0
Alignment gi|NP_004985.2| matrix metalloproteinase-9 preproprotein [Homo ... 545 e-155
Alignment gi|NP_002418.1| collagenase 3 preproprotein [Homo sapiens]. 215 2e-55
Alignment gi|NP_002416.1| stromelysin-2 preproprotein [Homo sapiens]. 212 1e-54
Alignment gi|NP_002413.1| stromelysin-1 preproprotein [Homo sapiens]. 208 2e-53
Alignment gi|NP_001139410.1| interstitial collagenase isoform 2 [Homo sap... 200 5e-51
Alignment gi|NP_002412.1| interstitial collagenase isoform 1 preproprotei... 200 5e-51
Alignment gi|NP_006681.1| matrix metalloproteinase-24 preproprotein [Homo... 200 7e-51
Alignment gi|NP_005932.2| matrix metalloproteinase-16 [Homo sapiens]. 200 7e-51
>ref|NP_004521.1| 72 kDa type IV collagenase isoform a preproprotein [Homo sapiens].
Length = 660
Score = 1303 bits (3372), Expect = 0.0
Identities = 603/643 (93%), Positives = 617/643 (95%)
Frame = +2
Query: 170 CVLGCLXXXXXXXXSPIIKFPGDVAPKTDKELAVQYLNTFYGCPKESCNLFVLKDTLKKM 349
C+LGCL SPIIKFPGDVAPKTDKELAVQYLNTFYGCPKESCNLFVLKDTLKKM
Sbjct: 18 CLLGCLLSHAAAAPSPIIKFPGDVAPKTDKELAVQYLNTFYGCPKESCNLFVLKDTLKKM 77
Query: 350 QKFFGLPQTGELDQSTIETMRKPRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDP 529
QKFFGLPQTG+LDQ+TIETMRKPRCGNPDVANYNFFPRKPKWDK QITYRIIGYTPDLDP
Sbjct: 78 QKFFGLPQTGDLDQNTIETMRKPRCGNPDVANYNFFPRKPKWDKNQITYRIIGYTPDLDP 137
Query: 530 ETVDDAFARAFRVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAP 709
ETVDDAFARAF+VWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAP
Sbjct: 138 ETVDDAFARAFQVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAP 197
Query: 710 GPGVGGDSHFDDDELWTLGEGQVVRVKYGNADGEYCKFPFSFNGKEYNSCTDTGRSDGFL 889
G GVGGDSHFDDDELWTLGEGQVVRVKYGNADGEYCKFPF FNGKEYNSCTDTGRSDGFL
Sbjct: 198 GTGVGGDSHFDDDELWTLGEGQVVRVKYGNADGEYCKFPFLFNGKEYNSCTDTGRSDGFL 257
Query: 890 WCSTTYNFDKDGKYGFCPHEALFTMGGNADGQPCKFPFRFQGTSYNSCTTEGRTDGYRWC 1069
WCSTTYNF+KDGKYGFCPHEALFTMGGNA+GQPCKFPFRFQGTSY+SCTTEGRTDGYRWC
Sbjct: 258 WCSTTYNFEKDGKYGFCPHEALFTMGGNAEGQPCKFPFRFQGTSYDSCTTEGRTDGYRWC 317
Query: 1070 GTTEDYDRDKKYGFCPETAMSTVGGNSEGAPCVFPFTFLGNKHESCTSAGRSDGKLWCAT 1249
GTTEDYDRDKKYGFCPETAMSTVGGNSEGAPCVFPFTFLGNK+ESCTSAGRSDGK+WCAT
Sbjct: 318 GTTEDYDRDKKYGFCPETAMSTVGGNSEGAPCVFPFTFLGNKYESCTSAGRSDGKMWCAT 377
Query: 1250 TANYDDDRKWGFCPDQGYSLFLVAAHEFGHAMGLEHSEDPGALMAPIYTYTKNFRLSHDD 1429
TANYDDDRKWGFCPDQGYSLFLVAAHEFGHAMGLEHS+DPGALMAPIYTYTKNFRLS DD
Sbjct: 378 TANYDDDRKWGFCPDQGYSLFLVAAHEFGHAMGLEHSQDPGALMAPIYTYTKNFRLSQDD 437
Query: 1430 VKGIQELYGASPDIDXXXXXXXXXXXXXXEICKQDIVFDGISQIRGEIFFFKDRFIWRTV 1609
+KGIQELYGASPDID EICKQDIVFDGI+QIRGEIFFFKDRFIWRTV
Sbjct: 438 IKGIQELYGASPDIDLGTGPTPTLGPVTPEICKQDIVFDGIAQIRGEIFFFKDRFIWRTV 497
Query: 1610 TPRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPLT 1789
TPRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAGNEYW+YSASTLERGYPKPLT
Sbjct: 498 TPRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAGNEYWIYSASTLERGYPKPLT 557
Query: 1790 SLGLPPDVQKVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNL 1969
SLGLPPDVQ+VDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNL
Sbjct: 558 SLGLPPDVQRVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNL 617
Query: 1970 DAVVDLQGGGHSYFFKGAYYLKLENQSLKSVKFGSIKSDWLGC 2098
DAVVDLQGGGHSYFFKGAYYLKLENQSLKSVKFGSIKSDWLGC
Sbjct: 618 DAVVDLQGGGHSYFFKGAYYLKLENQSLKSVKFGSIKSDWLGC 660
>ref|NP_001121363.1| 72 kDa type IV collagenase isoform b [Homo sapiens].
Length = 610
Score = 1254 bits (3246), Expect = 0.0
Identities = 578/610 (94%), Positives = 592/610 (97%)
Frame = +2
Query: 269 VQYLNTFYGCPKESCNLFVLKDTLKKMQKFFGLPQTGELDQSTIETMRKPRCGNPDVANY 448
+QYLNTFYGCPKESCNLFVLKDTLKKMQKFFGLPQTG+LDQ+TIETMRKPRCGNPDVANY
Sbjct: 1 MQYLNTFYGCPKESCNLFVLKDTLKKMQKFFGLPQTGDLDQNTIETMRKPRCGNPDVANY 60
Query: 449 NFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFRVWSDVTPLRFSRIHDGEADIM 628
NFFPRKPKWDK QITYRIIGYTPDLDPETVDDAFARAF+VWSDVTPLRFSRIHDGEADIM
Sbjct: 61 NFFPRKPKWDKNQITYRIIGYTPDLDPETVDDAFARAFQVWSDVTPLRFSRIHDGEADIM 120
Query: 629 INFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWTLGEGQVVRVKYGNADG 808
INFGRWEHGDGYPFDGKDGLLAHAFAPG GVGGDSHFDDDELWTLGEGQVVRVKYGNADG
Sbjct: 121 INFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWTLGEGQVVRVKYGNADG 180
Query: 809 EYCKFPFSFNGKEYNSCTDTGRSDGFLWCSTTYNFDKDGKYGFCPHEALFTMGGNADGQP 988
EYCKFPF FNGKEYNSCTDTGRSDGFLWCSTTYNF+KDGKYGFCPHEALFTMGGNA+GQP
Sbjct: 181 EYCKFPFLFNGKEYNSCTDTGRSDGFLWCSTTYNFEKDGKYGFCPHEALFTMGGNAEGQP 240
Query: 989 CKFPFRFQGTSYNSCTTEGRTDGYRWCGTTEDYDRDKKYGFCPETAMSTVGGNSEGAPCV 1168
CKFPFRFQGTSY+SCTTEGRTDGYRWCGTTEDYDRDKKYGFCPETAMSTVGGNSEGAPCV
Sbjct: 241 CKFPFRFQGTSYDSCTTEGRTDGYRWCGTTEDYDRDKKYGFCPETAMSTVGGNSEGAPCV 300
Query: 1169 FPFTFLGNKHESCTSAGRSDGKLWCATTANYDDDRKWGFCPDQGYSLFLVAAHEFGHAMG 1348
FPFTFLGNK+ESCTSAGRSDGK+WCATTANYDDDRKWGFCPDQGYSLFLVAAHEFGHAMG
Sbjct: 301 FPFTFLGNKYESCTSAGRSDGKMWCATTANYDDDRKWGFCPDQGYSLFLVAAHEFGHAMG 360
Query: 1349 LEHSEDPGALMAPIYTYTKNFRLSHDDVKGIQELYGASPDIDXXXXXXXXXXXXXXEICK 1528
LEHS+DPGALMAPIYTYTKNFRLS DD+KGIQELYGASPDID EICK
Sbjct: 361 LEHSQDPGALMAPIYTYTKNFRLSQDDIKGIQELYGASPDIDLGTGPTPTLGPVTPEICK 420
Query: 1529 QDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYEAPQEE 1708
QDIVFDGI+QIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYEAPQEE
Sbjct: 421 QDIVFDGIAQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYEAPQEE 480
Query: 1709 KAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSKNKKTYIFAGDKFWR 1888
KAVFFAGNEYW+YSASTLERGYPKPLTSLGLPPDVQ+VDAAFNWSKNKKTYIFAGDKFWR
Sbjct: 481 KAVFFAGNEYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGDKFWR 540
Query: 1889 YNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSLKSVKF 2068
YNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSLKSVKF
Sbjct: 541 YNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSLKSVKF 600
Query: 2069 GSIKSDWLGC 2098
GSIKSDWLGC
Sbjct: 601 GSIKSDWLGC 610
>ref|NP_004985.2| matrix metalloproteinase-9 preproprotein [Homo sapiens].
Length = 707
Score = 545 bits (1405), Expect = e-155
Identities = 290/594 (48%), Positives = 364/594 (61%), Gaps = 21/594 (3%)
Frame = +2
Query: 173 VLGCLXXXXXXXXSPIIKFPGDVAPK-TDKELAVQYLNTFYGCPK------ESCNLFVLK 331
VLGC S ++ FPGD+ TD++LA +YL YG + ES +L
Sbjct: 13 VLGCCFAAPRQRQSTLVLFPGDLRTNLTDRQLAEEYLYR-YGYTRVAEMRGESKSL---G 68
Query: 332 DTLKKMQKFFGLPQTGELDQSTIETMRKPRCGNPDVANYNFFPRKPKWDKTQITYRIIGY 511
L +QK LP+TGELD +T++ MR PRCG PD+ + F KW ITY I Y
Sbjct: 69 PALLLLQKQLSLPETGELDSATLKAMRTPRCGVPDLGRFQTFEGDLKWHHHNITYWIQNY 128
Query: 512 TPDLDPETVDDAFARAFRVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLL 691
+ DL +DDAFARAF +WS VTPL F+R++ +ADI+I FG EHGDGYPFDGKDGLL
Sbjct: 129 SEDLPRAVIDDAFARAFALWSAVTPLTFTRVYSRDADIVIQFGVAEHGDGYPFDGKDGLL 188
Query: 692 AHAFAPGPGVGGDSHFDDDELWTLGEGQVVRVKYGNADGEYCKFPFSFNGKEYNSCTDTG 871
AHAF PGPG+ GD+HFDDDELW+LG+G VV ++GNADG C FPF F G+ Y++CT G
Sbjct: 189 AHAFPPGPGIQGDAHFDDDELWSLGKGVVVPTRFGNADGAACHFPFIFEGRSYSACTTDG 248
Query: 872 RSDGFLWCSTTYNFDKDGKYGFCPHEALFTMGGNADGQPCKFPFRFQGTSYNSCTTEGRT 1051
RSDG WCSTT N+D D ++GFCP E L+T GNADG+PC+FPF FQG SY++CTT+GR+
Sbjct: 249 RSDGLPWCSTTANYDTDDRFGFCPSERLYTQDGNADGKPCQFPFIFQGQSYSACTTDGRS 308
Query: 1052 DGYRWCGTTEDYDRDKKYGFCPETAMSTV-GGNSEGAPCVFPFTFLGNKHESCTSAGRSD 1228
DGYRWC TT +YDRDK +GFCP A STV GGNS G CVFPFTFLG ++ +CTS GR D
Sbjct: 309 DGYRWCATTANYDRDKLFGFCPTRADSTVMGGNSAGELCVFPFTFLGKEYSTCTSEGRGD 368
Query: 1229 GKLWCATTANYDDDRKWGFCPDQGYSLFLVAAHEFGHAMGLEHSEDPGALMAPIYTYTKN 1408
G+LWCATT+N+D D+KWGFCPDQGYSLFLVAAHEFGHA+GL+HS P ALM P+Y +T+
Sbjct: 369 GRLWCATTSNFDSDKKWGFCPDQGYSLFLVAAHEFGHALGLDHSSVPEALMYPMYRFTEG 428
Query: 1409 FRLSHDDVKGIQELYGASPDID-XXXXXXXXXXXXXXEICK--QDIVFDGISQIRGEIFF 1579
L DDV GI+ LYG P+ + +C V G
Sbjct: 429 PPLHKDDVNGIRHLYGPRPEPEPRPPTTTTPQPTAPPTVCPTGPPTVHPSERPTAGP--- 485
Query: 1580 FKDRFIWRTVTPRDKPMGPLL----VATFWPELPEKIDA----VYEAPQE--EKAVFFAG 1729
T P P GP AT P P DA +++A E + F
Sbjct: 486 --------TGPPSAGPTGPPTAGPSTATTVPLSPVD-DACNVNIFDAIAEIGNQLYLFKD 536
Query: 1730 NEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSKNKKTYIFAGDKFWRY 1891
+YW +S R L + P +K+D+ F +KK + F+G + W Y
Sbjct: 537 GKYWRFSEGRGSRPQGPFLIADKWPALPRKLDSVFEERLSKKLFFFSGRQVWVY 590
Score = 97.4 bits (241), Expect = 6e-20
Identities = 61/190 (32%), Positives = 100/190 (52%), Gaps = 3/190 (1%)
Frame = +2
Query: 1538 VFDGISQIRGEIFFFKDRFIWRTVTPR-DKPMGPLLVATFWPELPEKIDAVYEAPQEEKA 1714
+FD I++I +++ FKD WR R +P GP L+A WP LP K+D+V+E +K
Sbjct: 520 IFDAIAEIGNQLYLFKDGKYWRFSEGRGSRPQGPFLIADKWPALPRKLDSVFEERLSKKL 579
Query: 1715 VFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSKNKKTYIFAGDKFWRYN 1894
FF+G + WVY+ +++ P+ L LGL DV +V A S K +F+G + WR++
Sbjct: 580 FFFSGRQVWVYTGASVLG--PRRLDKLGLGADVAQVTGALR-SGRGKMLLFSGRRLWRFD 636
Query: 1895 EVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQS-LKSV-KF 2068
+ +DP + + +P LD Q +YF + +Y ++ ++S L V +
Sbjct: 637 VKAQMVDPRSASEVDRMFPGVP--LDTHDVFQYREKAYFCQDRFYWRVSSRSELNQVDQV 694
Query: 2069 GSIKSDWLGC 2098
G + D L C
Sbjct: 695 GYVTYDILQC 704
>ref|NP_002418.1| collagenase 3 preproprotein [Homo sapiens].
Length = 471
Score = 215 bits (547), Expect = 2e-55
Identities = 109/258 (42%), Positives = 153/258 (59%), Gaps = 2/258 (0%)
Frame = +2
Query: 1253 ANYDDDRKWGFCPDQGYSLFLVAAHEFGHAMGLEHSEDPGALMAPIYTYT--KNFRLSHD 1426
A++DDD W +GY+LFLVAAHEFGH++GL+HS+DPGALM PIYTYT +F L D
Sbjct: 199 AHFDDDETWT-SSSKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDD 257
Query: 1427 DVKGIQELYGASPDIDXXXXXXXXXXXXXXEICKQDIVFDGISQIRGEIFFFKDRFIWRT 1606
DV+GIQ LYG + + C + D I+ +RGE FKDRF WR
Sbjct: 258 DVQGIQSLYGPGDE------DPNPKHPKTPDKCDPSLSLDAITSLRGETMIFKDRFFWR- 310
Query: 1607 VTPRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPL 1786
+ P+ L +FWPELP +IDA YE P + F G ++W + + GYPK +
Sbjct: 311 LHPQQVDAELFLTKSFWPELPNRIDAAYEHPSHDLIFIFRGRKFWALNGYDILEGYPKKI 370
Query: 1787 TSLGLPPDVQKVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDN 1966
+ LGLP +V+K+ AA ++ KT +F+G++ WRY++ MD +P+LI + + I D
Sbjct: 371 SELGLPKEVKKISAAVHFEDTGKTLLFSGNQVWRYDDTNHIMDKDYPRLIEEDFPGIGDK 430
Query: 1967 LDAVVDLQGGGHSYFFKG 2020
+DAV + G+ YFF G
Sbjct: 431 VDAV--YEKNGYIYFFNG 446
Score = 213 bits (541), Expect = 1e-54
Identities = 101/181 (55%), Positives = 126/181 (69%), Gaps = 6/181 (3%)
Frame = +2
Query: 236 DVAPKTDKELAVQYLNTFY------GCPKESCNLFVLKDTLKKMQKFFGLPQTGELDQST 397
D + D + A +YL ++Y G KE+ + + L++MQ FFGL TG+LD +T
Sbjct: 29 DDLSEEDLQFAERYLRSYYHPTNLAGILKENA-ASSMTERLREMQSFFGLEVTGKLDDNT 87
Query: 398 IETMRKPRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFRVWSD 577
++ M+KPRCG PDV YN FPR KW K +TYRI+ YTPD+ V+ AF +AF+VWSD
Sbjct: 88 LDVMKKPRCGVPDVGEYNVFPRTLKWSKMNLTYRIVNYTPDMTHSEVEKAFKKAFKVWSD 147
Query: 578 VTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELW 757
VTPL F+R+HDG ADIMI+FG EHGD YPFDG GLLAHAF PGP GGD+HFDDDE W
Sbjct: 148 VTPLNFTRLHDGIADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETW 207
Query: 758 T 760
T
Sbjct: 208 T 208
>ref|NP_002416.1| stromelysin-2 preproprotein [Homo sapiens].
Length = 476
Score = 212 bits (540), Expect = 1e-54
Identities = 117/287 (40%), Positives = 159/287 (55%), Gaps = 6/287 (2%)
Frame = +2
Query: 1256 NYDDDRKWGFCPDQGYSLFLVAAHEFGHAMGLEHSEDPGALMAPIY---TYTKNFRLSHD 1426
++DDD KW G +LFLVAAHE GH++GL HS + ALM P+Y T FRLS D
Sbjct: 195 HFDDDEKWTE-DASGTNLFLVAAHELGHSLGLFHSANTEALMYPLYNSFTELAQFRLSQD 253
Query: 1427 DVKGIQELYGASPDIDXXXXXXXXXXXXXXEI---CKQDIVFDGISQIRGEIFFFKDRFI 1597
DV GIQ LYG P E+ C + FD IS +RGE FFKDR+
Sbjct: 254 DVNGIQSLYGPPPASTEEPLVPTKSVPSGSEMPAKCDPALSFDAISTLRGEYLFFKDRYF 313
Query: 1598 WRTVTPRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYP 1777
WR +P L+ A FWP LP +DA YE + F GNE+W + ++ GYP
Sbjct: 314 WRRSHWNPEPEFHLISA-FWPSLPSYLDAAYEVNSRDTVFIFKGNEFWAIRGNEVQAGYP 372
Query: 1778 KPLTSLGLPPDVQKVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAI 1957
+ + +LG PP ++K+DAA + + KKTY FA DK+WR++E + M+ GFP+LIAD + +
Sbjct: 373 RGIHTLGFPPTIRKIDAAVSDKEKKKTYFFAADKYWRFDENSQSMEQGFPRLIADDFPGV 432
Query: 1958 PDNLDAVVDLQGGGHSYFFKGAYYLKLENQSLKSVKFGSIKSDWLGC 2098
+DAV LQ G YFF G+ + + + + V + WL C
Sbjct: 433 EPKVDAV--LQAFGFFYFFSGSSQFEFD-PNARMVTHILKSNSWLHC 476
Score = 199 bits (506), Expect = 1e-50
Identities = 97/177 (54%), Positives = 121/177 (68%), Gaps = 7/177 (3%)
Frame = +2
Query: 251 TDKELAVQYLNTFYGCPKE-------SCNLFVLKDTLKKMQKFFGLPQTGELDQSTIETM 409
++K+LA QYL +Y K+ NL V K ++ MQKF GL TG+LD T+E M
Sbjct: 29 SNKDLAQQYLEKYYNLEKDVKQFRRKDSNLIVKK--IQGMQKFLGLEVTGKLDTDTLEVM 86
Query: 410 RKPRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFRVWSDVTPL 589
RKPRCG PDV +++ FP PKW KT +TYRI+ YTPDL + VD A +A +VW +VTPL
Sbjct: 87 RKPRCGVPDVGHFSSFPGMPKWRKTHLTYRIVNYTPDLPRDAVDSAIEKALKVWEEVTPL 146
Query: 590 RFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWT 760
FSR+++GEADIMI+F EHGD Y FDG LAHA+ PGPG+ GD HFDDDE WT
Sbjct: 147 TFSRLYEGEADIMISFAVKEHGDFYSFDGPGHSLAHAYPPGPGLYGDIHFDDDEKWT 203
>ref|NP_002413.1| stromelysin-1 preproprotein [Homo sapiens].
Length = 477
Score = 208 bits (530), Expect = 2e-53
Identities = 113/288 (39%), Positives = 159/288 (55%), Gaps = 6/288 (2%)
Frame = +2
Query: 1253 ANYDDDRKWGFCPDQGYSLFLVAAHEFGHAMGLEHSEDPGALMAPIY---TYTKNFRLSH 1423
A++DDD +W G +LFLVAAHE GH++GL HS + ALM P+Y T FRLS
Sbjct: 195 AHFDDDEQWTK-DTTGTNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQ 253
Query: 1424 DDVKGIQELYGA---SPDIDXXXXXXXXXXXXXXEICKQDIVFDGISQIRGEIFFFKDRF 1594
DD+ GIQ LYG SP+ C + FD +S +RGEI FKDR
Sbjct: 254 DDINGIQSLYGPPPDSPETPLVPTEPVPPEPGTPANCDPALSFDAVSTLRGEILIFKDRH 313
Query: 1595 IWRTVTPRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGY 1774
WR + +P L +++FWP LP +DA YE ++ F GN++W + + GY
Sbjct: 314 FWRKSLRKLEPELHL-ISSFWPSLPSGVDAAYEVTSKDLVFIFKGNQFWAIRGNEVRAGY 372
Query: 1775 PKPLTSLGLPPDVQKVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNA 1954
P+ + +LG PP V+K+DAA + + KTY F DK+WR++E + M+PGFPK IA+ +
Sbjct: 373 PRGIHTLGFPPTVRKIDAAISDKEKNKTYFFVEDKYWRFDEKRNSMEPGFPKQIAEDFPG 432
Query: 1955 IPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSLKSVKFGSIKSDWLGC 2098
I +DAV + G YFF G+ L+ + + K V + WL C
Sbjct: 433 IDSKIDAV--FEEFGFFYFFTGSSQLEFD-PNAKKVTHTLKSNSWLNC 477
Score = 204 bits (520), Expect = 3e-52
Identities = 95/176 (53%), Positives = 120/176 (68%), Gaps = 6/176 (3%)
Frame = +2
Query: 251 TDKELAVQYLNTFYGCPKESCNLFVLKDT------LKKMQKFFGLPQTGELDQSTIETMR 412
T L +YL +Y K+ KD+ +++MQKF GL TG+LD T+E MR
Sbjct: 29 TSMNLVQKYLENYYDLKKDVKQFVRRKDSGPVVKKIREMQKFLGLEVTGKLDSDTLEVMR 88
Query: 413 KPRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFRVWSDVTPLR 592
KPRCG PDV ++ FP PKW KT +TYRI+ YTPDL + VD A +A +VW +VTPL
Sbjct: 89 KPRCGVPDVGHFRTFPGIPKWRKTHLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLT 148
Query: 593 FSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWT 760
FSR+++GEADIMI+F EHGD YPFDG +LAHA+APGPG+ GD+HFDDDE WT
Sbjct: 149 FSRLYEGEADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWT 204
>ref|NP_001139410.1| interstitial collagenase isoform 2 [Homo sapiens].
Length = 403
Score = 200 bits (509), Expect = 5e-51
Identities = 108/285 (37%), Positives = 156/285 (54%), Gaps = 3/285 (1%)
Frame = +2
Query: 1253 ANYDDDRKW--GFCPDQGYSLFLVAAHEFGHAMGLEHSEDPGALMAPIYTYTKNFRLSHD 1426
A++D+D +W F + Y+L VAAHE GH++GL HS D GALM P YT++ + +L+ D
Sbjct: 129 AHFDEDERWTNNF---REYNLHRVAAHELGHSLGLSHSTDIGALMYPSYTFSGDVQLAQD 185
Query: 1427 DVKGIQELYGASPDIDXXXXXXXXXXXXXXEICKQDIVFDGISQIRGEIFFFKDRFIWRT 1606
D+ GIQ +YG S + + C + FD I+ IRGE+ FFKDRF RT
Sbjct: 186 DIDGIQAIYGRSQN------PVQPIGPQTPKACDSKLTFDAITTIRGEVMFFKDRFYMRT 239
Query: 1607 VTPRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPL 1786
P + ++ FWP+LP ++A YE ++ FF GN+YW + GYPK +
Sbjct: 240 -NPFYPEVELNFISVFWPQLPNGLEAAYEFADRDEVRFFKGNKYWAVQGQNVLHGYPKDI 298
Query: 1787 -TSLGLPPDVQKVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPD 1963
+S G P V+ +DAA + KTY F +K+WRY+E K+ MDPG+PK+IA + I
Sbjct: 299 YSSFGFPRTVKHIDAALSEENTGKTYFFVANKYWRYDEYKRSMDPGYPKMIAHDFPGIGH 358
Query: 1964 NLDAVVDLQGGGHSYFFKGAYYLKLENQSLKSVKFGSIKSDWLGC 2098
+DAV G YFF G K + ++ + + S W C
Sbjct: 359 KVDAV--FMKDGFFYFFHGTRQYKFDPKTKRILTLQKANS-WFNC 400
Score = 174 bits (442), Expect = 3e-43
Identities = 77/138 (55%), Positives = 102/138 (73%)
Frame = +2
Query: 347 MQKFFGLPQTGELDQSTIETMRKPRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLD 526
MQ+FFGL TG+ D T++ M++PRCG PDVA + P+W++T +TYRI YTPDL
Sbjct: 1 MQEFFGLKVTGKPDAETLKVMKQPRCGVPDVAQFVLTEGNPRWEQTHLTYRIENYTPDLP 60
Query: 527 PETVDDAFARAFRVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFA 706
VD A +AF++WS+VTPL F+++ +G+ADIMI+F R +H D PFDG G LAHAF
Sbjct: 61 RADVDHAIEKAFQLWSNVTPLTFTKVSEGQADIMISFVRGDHRDNSPFDGPGGNLAHAFQ 120
Query: 707 PGPGVGGDSHFDDDELWT 760
PGPG+GGD+HFD+DE WT
Sbjct: 121 PGPGIGGDAHFDEDERWT 138
>ref|NP_002412.1| interstitial collagenase isoform 1 preproprotein [Homo sapiens].
Length = 469
Score = 200 bits (509), Expect = 5e-51
Identities = 108/285 (37%), Positives = 156/285 (54%), Gaps = 3/285 (1%)
Frame = +2
Query: 1253 ANYDDDRKW--GFCPDQGYSLFLVAAHEFGHAMGLEHSEDPGALMAPIYTYTKNFRLSHD 1426
A++D+D +W F + Y+L VAAHE GH++GL HS D GALM P YT++ + +L+ D
Sbjct: 195 AHFDEDERWTNNF---REYNLHRVAAHELGHSLGLSHSTDIGALMYPSYTFSGDVQLAQD 251
Query: 1427 DVKGIQELYGASPDIDXXXXXXXXXXXXXXEICKQDIVFDGISQIRGEIFFFKDRFIWRT 1606
D+ GIQ +YG S + + C + FD I+ IRGE+ FFKDRF RT
Sbjct: 252 DIDGIQAIYGRSQN------PVQPIGPQTPKACDSKLTFDAITTIRGEVMFFKDRFYMRT 305
Query: 1607 VTPRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPL 1786
P + ++ FWP+LP ++A YE ++ FF GN+YW + GYPK +
Sbjct: 306 -NPFYPEVELNFISVFWPQLPNGLEAAYEFADRDEVRFFKGNKYWAVQGQNVLHGYPKDI 364
Query: 1787 -TSLGLPPDVQKVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPD 1963
+S G P V+ +DAA + KTY F +K+WRY+E K+ MDPG+PK+IA + I
Sbjct: 365 YSSFGFPRTVKHIDAALSEENTGKTYFFVANKYWRYDEYKRSMDPGYPKMIAHDFPGIGH 424
Query: 1964 NLDAVVDLQGGGHSYFFKGAYYLKLENQSLKSVKFGSIKSDWLGC 2098
+DAV G YFF G K + ++ + + S W C
Sbjct: 425 KVDAV--FMKDGFFYFFHGTRQYKFDPKTKRILTLQKANS-WFNC 466
Score = 181 bits (460), Expect = 3e-45
Identities = 85/175 (48%), Positives = 117/175 (66%), Gaps = 6/175 (3%)
Frame = +2
Query: 254 DKELAVQYLNTFYGCPKESC------NLFVLKDTLKKMQKFFGLPQTGELDQSTIETMRK 415
D +L +YL +Y + N + + LK+MQ+FFGL TG+ D T++ M++
Sbjct: 30 DVDLVQKYLEKYYNLKNDGRQVEKRRNSGPVVEKLKQMQEFFGLKVTGKPDAETLKVMKQ 89
Query: 416 PRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFRVWSDVTPLRF 595
PRCG PDVA + P+W++T +TYRI YTPDL VD A +AF++WS+VTPL F
Sbjct: 90 PRCGVPDVAQFVLTEGNPRWEQTHLTYRIENYTPDLPRADVDHAIEKAFQLWSNVTPLTF 149
Query: 596 SRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWT 760
+++ +G+ADIMI+F R +H D PFDG G LAHAF PGPG+GGD+HFD+DE WT
Sbjct: 150 TKVSEGQADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWT 204
>ref|NP_006681.1| matrix metalloproteinase-24 preproprotein [Homo sapiens].
Length = 645
Score = 200 bits (508), Expect = 7e-51
Identities = 119/318 (37%), Positives = 162/318 (50%), Gaps = 37/318 (11%)
Frame = +2
Query: 1256 NYDDDRKW--GFCPDQGYSLFLVAAHEFGHAMGLEHSEDPGALMAPIYTY--TKNFRLSH 1423
++D D W G G LFLVA HE GHA+GLEHS DP A+MAP Y Y T NF+L
Sbjct: 257 HFDSDEPWTLGNANHDGNDLFLVAVHELGHALGLEHSSDPSAIMAPFYQYMETHNFKLPQ 316
Query: 1424 DDVKGIQELYGAS----------PDIDXXXXXXXXXXXXXXE------------------ 1519
DD++GIQ++YG P + +
Sbjct: 317 DDLQGIQKIYGPPAEPLEPTRPLPTLPVRRIHSPSERKHERQPRPPRPPLGDRPSTPGTK 376
Query: 1520 --ICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYE 1693
IC D F+ ++ RGE+F FKDR+ WR R + P+ + FW LP +IDA YE
Sbjct: 377 PNIC--DGNFNTVALFRGEMFVFKDRWFWRLRNNRVQEGYPMQIEQFWKGLPARIDAAYE 434
Query: 1694 APQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSKNKKTYIFAG 1873
+ + VFF G++YWV+ T+E GYP L LG + +D A W KTY F G
Sbjct: 435 RA-DGRFVFFKGDKYWVFKEVTVEPGYPHSLGELGSCLPREGIDTALRWEPVGKTYFFKG 493
Query: 1874 DKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSL 2053
+++WRY+E ++ DPG+PK I W IP + G ++YF+KG Y K +NQ L
Sbjct: 494 ERYWRYSEERRATDPGYPKPIT-VWKGIPQAPQGAFISKEGYYTYFYKGRDYWKFDNQKL 552
Query: 2054 KSVKFG---SIKSDWLGC 2098
SV+ G +I DW+GC
Sbjct: 553 -SVEPGYPRNILRDWMGC 569
Score = 147 bits (370), Expect = 7e-35
Identities = 78/161 (48%), Positives = 95/161 (59%), Gaps = 14/161 (8%)
Frame = +2
Query: 326 LKDTLKKMQKFFGLPQTGELDQSTIETMRKPRCGNPDVA-------NYNFFPRKPKWDKT 484
L+ + MQ+F+G+P TG LDQ+TIE M+KPRCG PD N + KW +
Sbjct: 107 LQSAVSTMQQFYGIPVTGVLDQTTIEWMKKPRCGVPDHPHLSRRRRNKRYALTGQKWRQK 166
Query: 485 QITYRIIGYTPDLDPETVDDAFARAFRVWSDVTPLRFSRI--HD-----GEADIMINFGR 643
ITY I YTP + A +AF VW VTPL F + H+ EADIMI F
Sbjct: 167 HITYSIHNYTPKVGELDTRKAIRQAFDVWQKVTPLTFEEVPYHEIKSDRKEADIMIFFAS 226
Query: 644 WEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWTLG 766
HGD PFDG+ G LAHA+ PGPG+GGD+HFD DE WTLG
Sbjct: 227 GFHGDSSPFDGEGGFLAHAYFPGPGIGGDTHFDSDEPWTLG 267
>ref|NP_005932.2| matrix metalloproteinase-16 [Homo sapiens].
Length = 607
Score = 200 bits (508), Expect = 7e-51
Identities = 122/315 (38%), Positives = 162/315 (51%), Gaps = 34/315 (10%)
Frame = +2
Query: 1256 NYDDDRKW--GFCPDQGYSLFLVAAHEFGHAMGLEHSEDPGALMAPIYTY--TKNFRLSH 1423
++D D W G G LFLVA HE GHA+GLEHS DP A+MAP Y Y T NF+L +
Sbjct: 221 HFDSDEPWTLGNPNHDGNDLFLVAVHELGHALGLEHSNDPTAIMAPFYQYMETDNFKLPN 280
Query: 1424 DDVKGIQELYGASPDI------------------------DXXXXXXXXXXXXXXEICKQ 1531
DD++GIQ++YG I D K
Sbjct: 281 DDLQGIQKIYGPPDKIPPPTRPLPTVPPHRSIPPADPRKNDRPKPPRPPTGRPSYPGAKP 340
Query: 1532 DIV---FDGISQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYEAPQ 1702
+I F+ ++ +R E+F FKD++ WR R P+ + FW LP IDAVYE
Sbjct: 341 NICDGNFNTLAILRREMFVFKDQWFWRVRNNRVMDGYPMQITYFWRGLPPSIDAVYEN-S 399
Query: 1703 EEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSKNKKTYIFAGDKF 1882
+ VFF GN+YWV+ +TL+ GYP L +LG +D+A W KTY F GD++
Sbjct: 400 DGNFVFFKGNKYWVFKDTTLQPGYPHDLITLGSGIPPHGIDSAIWWEDVGKTYFFKGDRY 459
Query: 1883 WRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSLKSV 2062
WRY+E K MDPG+PK I W IP++ + G +YF+KG Y K NQ LK V
Sbjct: 460 WRYSEEMKTMDPGYPKPIT-VWKGIPESPQGAFVHKENGFTYFYKGKEYWKFNNQILK-V 517
Query: 2063 KFG---SIKSDWLGC 2098
+ G SI D++GC
Sbjct: 518 EPGYPRSILKDFMGC 532
Score = 137 bits (346), Expect = 4e-32
Identities = 77/164 (46%), Positives = 99/164 (60%), Gaps = 17/164 (10%)
Frame = +2
Query: 326 LKDTLKKMQKFFGLPQTGELDQSTIETMRKPRCGNPDVA--NYNFFPRKP-------KWD 478
++ L MQ+F+G+ TG++D++TI+ M+KPRCG PD + F R+ KW
Sbjct: 69 MQSALAAMQQFYGINMTGKVDRNTIDWMKKPRCGVPDQTRGSSKFHIRRKRYALTGQKWQ 128
Query: 479 KTQITYRIIGYTPDL-DPETVDDAFARAFRVWSDVTPLRF-----SRIHDG--EADIMIN 634
ITY I TP + DPET A RAF VW +VTPL F S + +G + DI I
Sbjct: 129 HKHITYSIKNVTPKVGDPET-RKAIRRAFDVWQNVTPLTFEEVPYSELENGKRDVDITII 187
Query: 635 FGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWTLG 766
F HGD PFDG+ G LAHA+ PGPG+GGD+HFD DE WTLG
Sbjct: 188 FASGFHGDSSPFDGEGGFLAHAYFPGPGIGGDTHFDSDEPWTLG 231
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 121,315,716
Number of extensions: 3608752
Number of successful extensions: 16437
Number of sequences better than 1.0e-05: 47
Number of HSP's gapped: 16132
Number of HSP's successfully gapped: 115
Length of query: 970
Length of database: 18,297,164
Length adjustment: 112
Effective length of query: 858
Effective length of database: 14,605,196
Effective search space: 12531258168
Effective search space used: 12531258168
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PST01_0067_C06
(2912 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535300.2| PREDICTED: similar to matrix metalloproteinase ... 1250 0.0
Alignment gi|NP_001003219.1| matrix metalloproteinase-9 precursor [Canis ... 537 e-152
Alignment gi|XP_536598.2| PREDICTED: similar to Collagenase 3 precursor (... 219 2e-56
Alignment gi|NP_001002967.1| stromelysin-1 precursor [Canis lupus familia... 218 3e-56
Alignment gi|XP_544165.2| PREDICTED: similar to matrix metalloproteinase ... 200 7e-51
Alignment gi|XP_542973.2| PREDICTED: similar to Matrix metalloproteinase-... 200 7e-51
Alignment gi|XP_546546.2| PREDICTED: similar to Interstitial collagenase ... 196 8e-50
Alignment gi|XP_856947.1| PREDICTED: similar to matrix metalloproteinase ... 189 1e-47
Alignment gi|NP_001229655.1| matrilysin [Canis lupus familiaris]. 187 6e-47
Alignment gi|XP_848757.1| PREDICTED: similar to matrix metalloproteinase ... 186 1e-46
>ref|XP_535300.2| PREDICTED: similar to matrix metalloproteinase 2 preproprotein [Canis
familiaris].
Length = 612
Score = 1250 bits (3234), Expect = 0.0
Identities = 577/609 (94%), Positives = 587/609 (96%)
Frame = +2
Query: 272 QYLNTFYGCPKESCNLFVLKDTLKKMQKFFGLPQTGELDQSTIETMRKPRCGNPDVANYN 451
QYLNT+YGCPKE CNLFVLKDTLKKMQKFFGLPQTGELDQSTIETMRKPRCGNPDVANYN
Sbjct: 4 QYLNTYYGCPKERCNLFVLKDTLKKMQKFFGLPQTGELDQSTIETMRKPRCGNPDVANYN 63
Query: 452 FFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFRVWSDVTPLRFSRIHDGEADIMI 631
FFPRKPKWDK QITYRIIGYTPDLDPETVDDAFARAF+VWSDVTPLRFSRIHDGEADIMI
Sbjct: 64 FFPRKPKWDKNQITYRIIGYTPDLDPETVDDAFARAFQVWSDVTPLRFSRIHDGEADIMI 123
Query: 632 NFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWTLGEGQVVRVKYGNADGE 811
NFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWTLGEGQVVRVKYGNADGE
Sbjct: 124 NFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWTLGEGQVVRVKYGNADGE 183
Query: 812 YCKFPFSFNGKEYNSCTDTGRSDGFLWCSTTYNFDKDGKYGFCPHEALFTMGGNADGQPC 991
YCKFPF FNG+EY SCTDTGRSDGFLWCSTTYNF+KDGKYGFCPHEALFTMGGNADGQPC
Sbjct: 184 YCKFPFLFNGREYTSCTDTGRSDGFLWCSTTYNFEKDGKYGFCPHEALFTMGGNADGQPC 243
Query: 992 KFPFRFQGTSYNSCTTEGRTDGYRWCGTTEDYDRDKKYGFCPETAMSTVGGNSEGAPCVF 1171
KFPFRFQGTSY+SCTTEGRTDGYRWCGTTEDYDRDKKYGFCPETAMST+GGNSEGAPCVF
Sbjct: 244 KFPFRFQGTSYDSCTTEGRTDGYRWCGTTEDYDRDKKYGFCPETAMSTIGGNSEGAPCVF 303
Query: 1172 PFTFLGNKHESCTSAGRSDGKLWCATTANYDDDRKWGFCPDQGYSLFLVAAHEFGHAMGL 1351
PFTFLGNKHESCTSAGRSDGK+WCATTANYDDDRKWGFCPDQGYSLFLVAAHEFGHAMGL
Sbjct: 304 PFTFLGNKHESCTSAGRSDGKVWCATTANYDDDRKWGFCPDQGYSLFLVAAHEFGHAMGL 363
Query: 1352 EHSEDPGALMAPIYTYTKNFRLSHDDVKGIQELYGASPDIDXXXXXXXXXXXXXXEICKQ 1531
EHSEDPGALMAPIYTYTKNFRLS DD+KGIQELYGASPD EICKQ
Sbjct: 364 EHSEDPGALMAPIYTYTKNFRLSQDDIKGIQELYGASPDAGTGTGPTPTLGPVTPEICKQ 423
Query: 1532 DIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYEAPQEEK 1711
DIVFDGISQIRGEIFFFKDRFIWRTVTPR+KPMGPLLVATFWPELPEKIDAVYEAPQEEK
Sbjct: 424 DIVFDGISQIRGEIFFFKDRFIWRTVTPRNKPMGPLLVATFWPELPEKIDAVYEAPQEEK 483
Query: 1712 AVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSKNKKTYIFAGDKFWRY 1891
AVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQ+VDAAFNWSKNKKTYIFAGDKFWRY
Sbjct: 484 AVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGDKFWRY 543
Query: 1892 NEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSLKSVKFG 2071
NEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQG GHSYFFKGAYYLKLENQSLKSVKFG
Sbjct: 544 NEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGSGHSYFFKGAYYLKLENQSLKSVKFG 603
Query: 2072 SIKSDWLGC 2098
SIKSDWLGC
Sbjct: 604 SIKSDWLGC 612
>ref|NP_001003219.1| matrix metalloproteinase-9 precursor [Canis lupus familiaris].
Length = 704
Score = 537 bits (1384), Expect = e-152
Identities = 253/436 (58%), Positives = 312/436 (71%), Gaps = 4/436 (0%)
Frame = +2
Query: 173 VLGCLXXXXXXXXSPIIKFPGDVAPK-TDKELAVQYLNTF-YGCPKE-SCNLFVLKDTLK 343
VLGC ++ FPGD+ TDK+LA +YL + Y E S + L L+
Sbjct: 13 VLGCCSAAPRPHKPTVVVFPGDLRTNLTDKQLAEEYLFRYGYTQVAELSDDKQSLSRGLR 72
Query: 344 KMQKFFGLPQTGELDQSTIETMRKPRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDL 523
+Q+ LP+TGELD++T+E MR PRCG PD+ + F KW ITY I Y+ DL
Sbjct: 73 LLQRRLALPETGELDKTTLEAMRAPRCGVPDLGKFQTFEGDLKWHHNDITYWIQNYSEDL 132
Query: 524 DPETVDDAFARAFRVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAF 703
+ +DDAFARAF VWS VTPL F+R++ EADI+I FG EHGDGYPFDGK+GLLAHAF
Sbjct: 133 PRDVIDDAFARAFAVWSAVTPLTFTRVYGPEADIIIQFGVREHGDGYPFDGKNGLLAHAF 192
Query: 704 APGPGVGGDSHFDDDELWTLGEGQVVRVKYGNADGEYCKFPFSFNGKEYNSCTDTGRSDG 883
PGPG+ GD+HFDD+ELWTLG+G VV +GNADG C FPF+F G+ Y++CT GRSD
Sbjct: 193 PPGPGIQGDAHFDDEELWTLGKGVVVPTHFGNADGAPCHFPFTFEGRSYSACTTDGRSDD 252
Query: 884 FLWCSTTYNFDKDGKYGFCPHEALFTMGGNADGQPCKFPFRFQGTSYNSCTTEGRTDGYR 1063
WCSTT ++D D ++GFCP E L+T GN DG+PC FPF F+G SY++CTT+GR+DGYR
Sbjct: 253 TPWCSTTADYDTDRRFGFCPSEKLYTQDGNGDGKPCVFPFTFEGRSYSTCTTDGRSDGYR 312
Query: 1064 WCGTTEDYDRDKKYGFCPETAMSTV-GGNSEGAPCVFPFTFLGNKHESCTSAGRSDGKLW 1240
WC TT DYD+DK YGFCP S V GGNS G PCVFPF FLG ++ +CT GR DG LW
Sbjct: 313 WCSTTGDYDQDKLYGFCPTRVDSAVTGGNSAGEPCVFPFIFLGKQYSTCTREGRGDGHLW 372
Query: 1241 CATTANYDDDRKWGFCPDQGYSLFLVAAHEFGHAMGLEHSEDPGALMAPIYTYTKNFRLS 1420
CATT+N+D D+KWGFCPDQGYSLFLVAAHEFGHA+GL+HS P ALM P+Y++T+ L
Sbjct: 373 CATTSNFDRDKKWGFCPDQGYSLFLVAAHEFGHALGLDHSSVPEALMYPMYSFTEGPPLH 432
Query: 1421 HDDVKGIQELYGASPD 1468
DDV+GIQ LYG P+
Sbjct: 433 EDDVRGIQHLYGPRPE 448
Score = 91.7 bits (226), Expect = 4e-18
Identities = 57/197 (28%), Positives = 100/197 (50%), Gaps = 3/197 (1%)
Frame = +2
Query: 1517 EICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPM-GPLLVATFWPELPEKIDAVYE 1693
+ICK +I FD I++IR + FFK+ WR + + + GP L+ WP LP K+D+ +E
Sbjct: 511 DICKVNI-FDAIAEIRNYLHFFKEGKYWRFSKGKGRRVQGPFLITDTWPALPRKLDSAFE 569
Query: 1694 APQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSKNKKTYIFAG 1873
+K FF+G + WVY+ +++ P+ L LGL P+V +V A K +F+
Sbjct: 570 DGLTKKTFFFSGRQVWVYTGTSVVG--PRRLDKLGLGPEVTQVTGALP-QGGGKVLLFSR 626
Query: 1874 DKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKL--ENQ 2047
+FW ++ + +DP + + +P N + Q +YF + +Y ++ N+
Sbjct: 627 QRFWSFDVKTQTVDPRSAGSVEQMYPGVPLNTHDIFQYQ--EKAYFCQDRFYWRVNSRNE 684
Query: 2048 SLKSVKFGSIKSDWLGC 2098
+ + G + D L C
Sbjct: 685 VNQVDEVGYVTFDILQC 701
>ref|XP_536598.2| PREDICTED: similar to Collagenase 3 precursor (Matrix
metalloproteinase-13) (MMP-13) [Canis familiaris].
Length = 470
Score = 219 bits (557), Expect = 2e-56
Identities = 106/181 (58%), Positives = 128/181 (70%), Gaps = 6/181 (3%)
Frame = +2
Query: 236 DVAPKTDKELAVQYLNTFY------GCPKESCNLFVLKDTLKKMQKFFGLPQTGELDQST 397
D + D +LA +YL ++Y G K+S V D L++MQ FFGL TG+LD +T
Sbjct: 28 DDLSEEDFQLAERYLKSYYYPLNPAGILKKSAAGSVA-DRLREMQSFFGLEVTGKLDDNT 86
Query: 398 IETMRKPRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFRVWSD 577
++ M+KPRCG PDV YN FPR KW KT +TYRI+ YTPDL V+ AF +AF+VWSD
Sbjct: 87 LDIMKKPRCGVPDVGEYNVFPRTLKWSKTNLTYRIVNYTPDLTHSEVEKAFKKAFKVWSD 146
Query: 578 VTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELW 757
VTPL F+R+HDG ADIMI+FG EHGD YPFDG GLLAHAF PGP GGD+HFDDDE W
Sbjct: 147 VTPLNFTRLHDGTADIMISFGTKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETW 206
Query: 758 T 760
T
Sbjct: 207 T 207
Score = 211 bits (537), Expect = 3e-54
Identities = 107/258 (41%), Positives = 151/258 (58%), Gaps = 2/258 (0%)
Frame = +2
Query: 1253 ANYDDDRKWGFCPDQGYSLFLVAAHEFGHAMGLEHSEDPGALMAPIYTYT--KNFRLSHD 1426
A++DDD W +GY+LFLVAAHEFGH++GL+HS+DPGALM PIYTYT +F L D
Sbjct: 198 AHFDDDETWT-SSSKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDD 256
Query: 1427 DVKGIQELYGASPDIDXXXXXXXXXXXXXXEICKQDIVFDGISQIRGEIFFFKDRFIWRT 1606
DV+GIQ LYG + + C + D I+ +RGE FKDRF WR
Sbjct: 257 DVQGIQSLYGPGDE------DPNPRHPKTPDKCDPSLSLDAITSLRGETMIFKDRFFWR- 309
Query: 1607 VTPRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPL 1786
+ P+ L +FWPELP +IDA YE P + F G +YW + + GYP+ +
Sbjct: 310 LHPQQVDAELFLTKSFWPELPNRIDAAYEHPSRDLIFIFRGRKYWALNGYDILEGYPQKI 369
Query: 1787 TSLGLPPDVQKVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDN 1966
+ LG P +V+K+ AA ++ KT F+G++ W Y++ + MD +P+LI + + I D
Sbjct: 370 SELGFPKEVKKISAAVHFEDTGKTLFFSGNQVWSYDDTNQIMDKDYPRLIEEDFPGIGDK 429
Query: 1967 LDAVVDLQGGGHSYFFKG 2020
+DAV + G+ YFF G
Sbjct: 430 VDAV--YEKNGYIYFFNG 445
>ref|NP_001002967.1| stromelysin-1 precursor [Canis lupus familiaris].
Length = 478
Score = 218 bits (554), Expect = 3e-56
Identities = 116/289 (40%), Positives = 159/289 (55%), Gaps = 7/289 (2%)
Frame = +2
Query: 1253 ANYDDDRKWGFCPDQGYSLFLVAAHEFGHAMGLEHSEDPGALMAPIYTYTKN---FRLSH 1423
A++DDD +W G +LFLVAAHE GH++GL HS DP ALM P+Y + F LS
Sbjct: 195 AHFDDDEQWT-SDTSGTNLFLVAAHELGHSLGLFHSADPSALMYPVYNVLADLARFHLSQ 253
Query: 1424 DDVKGIQELYGASPDIDXXXXXXXXXXXXXXE----ICKQDIVFDGISQIRGEIFFFKDR 1591
DDV GIQ LYG P C + FD IS +RGE FFKDR
Sbjct: 254 DDVNGIQSLYGGPPSDSSNDPVVPTESVPPGPGTPAACDPTLSFDAISTLRGEFLFFKDR 313
Query: 1592 FIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERG 1771
WR +P G L+++FWP LP +DA YE ++ F GN++W + ++ G
Sbjct: 314 HFWRKSLRTLEP-GFYLISSFWPSLPSGLDAAYEETSKDIVFIFKGNQFWAMRGTEVQAG 372
Query: 1772 YPKPLTSLGLPPDVQKVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWN 1951
YPK + +LG PP V+K+DAA + KKTY F GDK+WR++E ++ M+PGFPK IA+ +
Sbjct: 373 YPKGIHTLGFPPTVKKIDAAVFDKEKKKTYFFVGDKYWRFDEKRQSMEPGFPKQIAEDFP 432
Query: 1952 AIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSLKSVKFGSIKSDWLGC 2098
+ +DA + G YFF G+ L+ + + K V + WL C
Sbjct: 433 GVDSKVDAA--FEAFGFYYFFNGSSQLEFD-PNAKKVTHVLKSNSWLNC 478
Score = 185 bits (469), Expect = 2e-46
Identities = 90/187 (48%), Positives = 118/187 (63%), Gaps = 9/187 (4%)
Frame = +2
Query: 227 FPGDVAPKTDK---ELAVQYLNTFYGCPKE------SCNLFVLKDTLKKMQKFFGLPQTG 379
+P D A + + EL QYL +Y K+ N + + +++MQKF GL TG
Sbjct: 18 YPVDRAAEDENNNMELTQQYLENYYNLGKDVKPFVRRRNSGPVVEKIREMQKFLGLEVTG 77
Query: 380 ELDQSTIETMRKPRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARA 559
++D T+ MR+PRCG PDV ++ FP PKW KT +TYRI+ YTPDL + VD A +A
Sbjct: 78 KVDSDTLAMMRRPRCGVPDVGDFTTFPGMPKWRKTHLTYRIMNYTPDLPRDAVDSAIEKA 137
Query: 560 FRVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHF 739
VW +VTPL FSR +GEADI I+F +HGD PFDG +L HA+ PGPG+ GD+HF
Sbjct: 138 LNVWKEVTPLTFSRTDEGEADIKISFAVRDHGDFNPFDGPGNVLGHAYPPGPGIYGDAHF 197
Query: 740 DDDELWT 760
DDDE WT
Sbjct: 198 DDDEQWT 204
>ref|XP_544165.2| PREDICTED: similar to matrix metalloproteinase 16 isoform 1 [Canis
familiaris].
Length = 595
Score = 200 bits (508), Expect = 7e-51
Identities = 122/315 (38%), Positives = 162/315 (51%), Gaps = 34/315 (10%)
Frame = +2
Query: 1256 NYDDDRKW--GFCPDQGYSLFLVAAHEFGHAMGLEHSEDPGALMAPIYTY--TKNFRLSH 1423
++D D W G G LFLVA HE GHA+GLEHS DP A+MAP Y Y T NF+L +
Sbjct: 209 HFDSDEPWTLGNPNHDGNDLFLVAVHELGHALGLEHSNDPTAIMAPFYQYMETDNFKLPN 268
Query: 1424 DDVKGIQELYGASPDI------------------------DXXXXXXXXXXXXXXEICKQ 1531
DD++GIQ++YG I D K
Sbjct: 269 DDLQGIQKIYGPPDKIPPPTRPLPTVPPHRSIPPADPRKNDRPKPPRPPTGRPSYPGAKP 328
Query: 1532 DIV---FDGISQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYEAPQ 1702
+I F+ ++ +R E+F FKD++ WR R P+ + FW LP IDAVYE
Sbjct: 329 NICDGNFNTLAILRREMFVFKDQWFWRVRNNRVMDGYPMQITYFWRGLPPSIDAVYEN-S 387
Query: 1703 EEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSKNKKTYIFAGDKF 1882
+ VFF GN+YWV+ +TL+ GYP L +LG +D+A W KTY F GD++
Sbjct: 388 DGNFVFFKGNKYWVFKDTTLQPGYPHDLITLGSGIPPHGIDSAIWWEDVGKTYFFKGDRY 447
Query: 1883 WRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSLKSV 2062
WRY+E K MDPG+PK I W IP++ + G +YF+KG Y K NQ LK V
Sbjct: 448 WRYSEEMKTMDPGYPKPIT-VWKGIPESPQGAFVHKENGFTYFYKGKEYWKFNNQILK-V 505
Query: 2063 KFG---SIKSDWLGC 2098
+ G SI D++GC
Sbjct: 506 EPGYPRSILKDFMGC 520
Score = 137 bits (345), Expect = 6e-32
Identities = 76/164 (46%), Positives = 100/164 (60%), Gaps = 17/164 (10%)
Frame = +2
Query: 326 LKDTLKKMQKFFGLPQTGELDQSTIETMRKPRCGNPDV----ANYNFFPRK-----PKWD 478
++ L MQ+F+G+ TG++D++TI+ M+KPRCG PD + +N ++ KW
Sbjct: 57 MQAALAAMQQFYGINMTGKVDRNTIDWMKKPRCGVPDQTRGSSKFNIRRKRYALTGQKWQ 116
Query: 479 KTQITYRIIGYTPDL-DPETVDDAFARAFRVWSDVTPLRF-----SRIHDG--EADIMIN 634
ITY I TP + DPET A RAF VW +VTPL F S + +G + DI I
Sbjct: 117 HKHITYSIKNVTPKVGDPET-RKAIRRAFDVWQNVTPLTFEEVPYSELENGKRDVDITII 175
Query: 635 FGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWTLG 766
F HGD PFDG+ G LAHA+ PGPG+GGD+HFD DE WTLG
Sbjct: 176 FASGFHGDSSPFDGEGGFLAHAYFPGPGIGGDTHFDSDEPWTLG 219
>ref|XP_542973.2| PREDICTED: similar to Matrix metalloproteinase-24 precursor (MMP-24)
(Membrane-type matrix metalloproteinase 5) (MT-MMP 5)
(Membrane-type-5 matrix metalloproteinase) (MT5-MMP)
[Canis familiaris].
Length = 626
Score = 200 bits (508), Expect = 7e-51
Identities = 119/318 (37%), Positives = 162/318 (50%), Gaps = 37/318 (11%)
Frame = +2
Query: 1256 NYDDDRKW--GFCPDQGYSLFLVAAHEFGHAMGLEHSEDPGALMAPIYTY--TKNFRLSH 1423
++D D W G G LFLVA HE GHA+GLEHS DP A+MAP Y Y T NF+L
Sbjct: 238 HFDSDEPWTLGNANHDGNDLFLVAVHELGHALGLEHSNDPSAIMAPFYQYMETHNFKLPQ 297
Query: 1424 DDVKGIQELYGAS----------PDIDXXXXXXXXXXXXXXE------------------ 1519
DD++GIQ++YG P + +
Sbjct: 298 DDLQGIQKIYGPPAEPLEPTRPLPTLPVRRIHSPSERKHERQPRPPRPPLGDRPSTPGAK 357
Query: 1520 --ICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYE 1693
IC D F+ ++ RGE+F FKDR+ WR R + P+ + FW LP +IDA YE
Sbjct: 358 PNIC--DGNFNTVALFRGEMFVFKDRWFWRLRNNRVQEGYPMQIEQFWKGLPARIDAAYE 415
Query: 1694 APQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSKNKKTYIFAG 1873
+ + VFF G++YWV+ T+E GYP L LG + +D A W KTY F G
Sbjct: 416 RA-DGRFVFFKGDKYWVFKEVTVEPGYPHSLGELGSCLPREGIDTALRWEPVGKTYFFKG 474
Query: 1874 DKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSL 2053
+++WRY+E ++ DPG+PK I W IP + G ++YF+KG Y K +NQ L
Sbjct: 475 ERYWRYSEERRATDPGYPKPIT-VWKGIPQAPQGAFISKEGYYTYFYKGRDYWKFDNQKL 533
Query: 2054 KSVKFG---SIKSDWLGC 2098
SV+ G +I DW+GC
Sbjct: 534 -SVEPGYPRNILRDWMGC 550
Score = 147 bits (370), Expect = 7e-35
Identities = 78/161 (48%), Positives = 95/161 (59%), Gaps = 14/161 (8%)
Frame = +2
Query: 326 LKDTLKKMQKFFGLPQTGELDQSTIETMRKPRCGNPDVA-------NYNFFPRKPKWDKT 484
L+ + MQ+F+G+P TG LDQ+TIE M+KPRCG PD N + KW +
Sbjct: 88 LQSAVSTMQQFYGIPVTGVLDQTTIEWMKKPRCGVPDHPHLSRRRRNKRYALTGQKWRQK 147
Query: 485 QITYRIIGYTPDLDPETVDDAFARAFRVWSDVTPLRFSRI--HD-----GEADIMINFGR 643
ITY I YTP + A +AF VW VTPL F + H+ EADIMI F
Sbjct: 148 HITYSIHNYTPKVGELDTRKAIRQAFDVWQKVTPLTFEEVPYHEIKSDRKEADIMIFFAS 207
Query: 644 WEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWTLG 766
HGD PFDG+ G LAHA+ PGPG+GGD+HFD DE WTLG
Sbjct: 208 GFHGDSSPFDGEGGFLAHAYFPGPGIGGDTHFDSDEPWTLG 248
>ref|XP_546546.2| PREDICTED: similar to Interstitial collagenase precursor (Matrix
metalloproteinase-1) (MMP-1) (Fibroblast collagenase)
[Canis familiaris].
Length = 465
Score = 196 bits (499), Expect = 8e-50
Identities = 107/284 (37%), Positives = 154/284 (54%), Gaps = 3/284 (1%)
Frame = +2
Query: 1256 NYDDDRKW--GFCPDQGYSLFLVAAHEFGHAMGLEHSEDPGALMAPIYTYTKNFRLSHDD 1429
++D+D W F + Y+L+ VAAHE GH++GL HS D GALM P Y Y+ N +LS DD
Sbjct: 195 HFDEDETWTNNF---RNYNLYRVAAHELGHSLGLSHSTDIGALMYPNYMYSGNVQLSQDD 251
Query: 1430 VKGIQELYGASPDIDXXXXXXXXXXXXXXEICKQDIVFDGISQIRGEIFFFKDRFIWRTV 1609
+ GIQ +YG S + ++C + + FD I+ IRGE+ F KDRF R V
Sbjct: 252 INGIQAIYGPSQN------PVQPTGPQTPQVCDRKLTFDAITTIRGEVMFLKDRFYMR-V 304
Query: 1610 TPRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPL- 1786
P + ++ FWP LP + A YE + ++ FF G++YWV + GYPK +
Sbjct: 305 NPFYPEVELNFISVFWPNLPNGLQAAYEVSERDEVRFFKGDKYWVVQGQDVLYGYPKDIH 364
Query: 1787 TSLGLPPDVQKVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDN 1966
S G P V+ +DAA + KTY F +K+WRY+E K+ MD G+P++IA + I
Sbjct: 365 RSFGFPRTVKSIDAAVSDENTGKTYFFVANKYWRYDEYKQSMDAGYPQMIAAGFPGIGHK 424
Query: 1967 LDAVVDLQGGGHSYFFKGAYYLKLENQSLKSVKFGSIKSDWLGC 2098
+DAV Q G YFF G K + ++ + + S W C
Sbjct: 425 VDAV--FQKDGFFYFFHGKRQYKFDLRTKRVLSLDKANS-WFNC 465
Score = 170 bits (430), Expect = 8e-42
Identities = 83/175 (47%), Positives = 112/175 (64%), Gaps = 6/175 (3%)
Frame = +2
Query: 254 DKELAVQYLNTFYGCPKESC------NLFVLKDTLKKMQKFFGLPQTGELDQSTIETMRK 415
D E+ YL +Y + N ++ + LK+MQ FFGL TG++D T+ M++
Sbjct: 30 DVEMVQNYLEKYYYLKSDGKPVVRQRNNSLVSEKLKQMQAFFGLKVTGKVDTDTLNLMKQ 89
Query: 416 PRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFRVWSDVTPLRF 595
PRCG PDVA Y +WD T +TYRI YTPDL VD A +AF++WS+V+PL F
Sbjct: 90 PRCGVPDVAQY-VLTDGSQWDHTHLTYRIENYTPDLPRAEVDSAIEKAFQLWSNVSPLTF 148
Query: 596 SRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWT 760
+++ +G+ADIMI+F +H D PFDG +G LAHAF PGP +GGD HFD+DE WT
Sbjct: 149 TKVFEGQADIMISFVWGDHRDNSPFDGPNGNLAHAFQPGPNLGGDIHFDEDETWT 203
>ref|XP_856947.1| PREDICTED: similar to matrix metalloproteinase 14 preproprotein
isoform 2 [Canis familiaris].
Length = 582
Score = 189 bits (480), Expect = 1e-47
Identities = 112/291 (38%), Positives = 155/291 (53%), Gaps = 17/291 (5%)
Frame = +2
Query: 1298 GYSLFLVAAHEFGHAMGLEHSEDPGALMAPIYTY--TKNFRLSHDDVKGIQELYGASPDI 1471
G +FLVA HE GHA+GLEHS DP A+MAP Y + T+NF L DD +GIQ+LYG+
Sbjct: 229 GNDIFLVAVHELGHALGLEHSNDPSAIMAPFYQWMDTENFVLPDDDRRGIQQLYGSESGS 288
Query: 1472 DXXXXXXXXXXXXXX------------EICKQDIVFDGISQIRGEIFFFKDRFIWRTVTP 1615
IC D FD ++ +RGE+F FK+R+ WR
Sbjct: 289 PTKMPPQPRTTSRPSVPDKPKNPTYGPNIC--DGNFDTVAVLRGEMFVFKERWFWRVRNN 346
Query: 1616 RDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPLTSL 1795
+ P+ + FW LP I+ YE ++ K VFF G+++WV+ ++LE GYPK + L
Sbjct: 347 QVMDGYPMPIGQFWRGLPASINTAYER-KDGKFVFFKGDKHWVFDEASLEPGYPKHIKEL 405
Query: 1796 GLPPDVQKVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDA 1975
G K+DAA W N KTY F G+K++R+NE + +D +PK I W IP++
Sbjct: 406 GRGLPTDKIDAALFWMPNGKTYFFRGNKYYRFNEELRAVDSEYPKNI-KVWEGIPESPRG 464
Query: 1976 VVDLQGGGHSYFFKGAYYLKLENQSLKSVKFGSIKS---DWLGC*AGSTSP 2119
+YF+KG Y K NQ LK V+ G KS DW+GC + + P
Sbjct: 465 SFMGSDEVFTYFYKGNKYWKFNNQKLK-VEPGYPKSALRDWMGCPSSGSRP 514
Score = 136 bits (343), Expect = 1e-31
Identities = 69/156 (44%), Positives = 89/156 (57%), Gaps = 17/156 (10%)
Frame = +2
Query: 347 MQKFFGLPQTGELDQSTIETMRKPRCGNPD---------VANYNFFPRKPKWDKTQITYR 499
MQKF+GL TG+ D T++ MR+PRCG PD V + + KW +IT+
Sbjct: 67 MQKFYGLRVTGKADADTMKAMRRPRCGVPDKFGAEIKANVRRKRYAIQGLKWQHNEITFC 126
Query: 500 IIGYTPDLDPETVDDAFARAFRVWSDVTPLRFSRI--------HDGEADIMINFGRWEHG 655
I YTP + +A +AFRVW TPLRF + H+ +ADIMI F HG
Sbjct: 127 IQNYTPKVGEYATFEAIRKAFRVWESATPLRFREVPYAYIREGHEKQADIMIFFAEGFHG 186
Query: 656 DGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWTL 763
D PFDG+ G LAHA+ PGP +GGD+HFD E WT+
Sbjct: 187 DSTPFDGEGGFLAHAYFPGPNIGGDTHFDSAEPWTV 222
>ref|NP_001229655.1| matrilysin [Canis lupus familiaris].
Length = 263
Score = 187 bits (474), Expect = 6e-47
Identities = 91/167 (54%), Positives = 109/167 (65%)
Frame = +2
Query: 266 AVQYLNTFYGCPKESCNLFVLKDTLKKMQKFFGLPQTGELDQSTIETMRKPRCGNPDVAN 445
A YL FY ++ + K LK+MQKFF LP TG L+ TIE M+KPRCG PDVA+
Sbjct: 35 AQDYLKRFYPSDSKTRDADSFKTKLKEMQKFFRLPVTGILNSRTIEIMQKPRCGVPDVAH 94
Query: 446 YNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFRVWSDVTPLRFSRIHDGEADI 625
++ FP +PKW ITYRI YTPDL V+ A+A +WS PL F R+ G ADI
Sbjct: 95 FSLFPNRPKWTSEVITYRIASYTPDLPRFRVNQLVAKALAMWSKEIPLSFRRVPRGTADI 154
Query: 626 MINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWTLG 766
MI F R HGD YPFDG +LAHAFAPGP +GGD+HFD+DE WT G
Sbjct: 155 MIGFARGAHGDYYPFDGPGNILAHAFAPGPDLGGDAHFDEDERWTDG 201
Score = 72.4 bits (176), Expect = 2e-12
Identities = 32/72 (44%), Positives = 49/72 (68%), Gaps = 2/72 (2%)
Frame = +2
Query: 1253 ANYDDDRKWGFCPDQGYSLFLVAAHEFGHAMGLEHSEDPGALMAPIYTY--TKNFRLSHD 1426
A++D+D +W G + + A HE GH++GL HS DP A+M P Y+ +K+F+LS D
Sbjct: 190 AHFDEDERWTDGSRIGINFLIAATHELGHSLGLGHSSDPDAVMYPTYSIRDSKSFKLSQD 249
Query: 1427 DVKGIQELYGAS 1462
D++GIQ+LYG +
Sbjct: 250 DIEGIQKLYGGN 261
>ref|XP_848757.1| PREDICTED: similar to matrix metalloproteinase 14 preproprotein
isoform 1 [Canis familiaris].
Length = 585
Score = 186 bits (472), Expect = 1e-46
Identities = 113/294 (38%), Positives = 155/294 (52%), Gaps = 20/294 (6%)
Frame = +2
Query: 1298 GYSLFLVAAHEFGHAMGLEHSEDPGALMAPIYTY--TKNFRLSHDDVKGIQELYGASPDI 1471
G +FLVA HE GHA+GLEHS DP A+MAP Y + T+NF L DD +GIQ+LYG+
Sbjct: 229 GNDIFLVAVHELGHALGLEHSNDPSAIMAPFYQWMDTENFVLPDDDRRGIQQLYGSESGS 288
Query: 1472 DXXXXXXXXXXXXXX------------EICKQDIVFDGISQIRGEIFFFKDRFIWRTVTP 1615
IC D FD ++ +RGE+F FK+R+ WR
Sbjct: 289 PTKMPPQPRTTSRPSVPDKPKNPTYGPNIC--DGNFDTVAVLRGEMFVFKERWFWRVRNN 346
Query: 1616 RDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAGN---EYWVYSASTLERGYPKPL 1786
+ P+ + FW LP I+ YE ++ K VFF GN ++WV+ ++LE GYPK +
Sbjct: 347 QVMDGYPMPIGQFWRGLPASINTAYER-KDGKFVFFKGNHGTQHWVFDEASLEPGYPKHI 405
Query: 1787 TSLGLPPDVQKVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDN 1966
LG K+DAA W N KTY F G+K++R+NE + +D +PK I W IP++
Sbjct: 406 KELGRGLPTDKIDAALFWMPNGKTYFFRGNKYYRFNEELRAVDSEYPKNI-KVWEGIPES 464
Query: 1967 LDAVVDLQGGGHSYFFKGAYYLKLENQSLKSVKFGSIKS---DWLGC*AGSTSP 2119
+YF+KG Y K NQ LK V+ G KS DW+GC + + P
Sbjct: 465 PRGSFMGSDEVFTYFYKGNKYWKFNNQKLK-VEPGYPKSALRDWMGCPSSGSRP 517
Score = 136 bits (343), Expect = 1e-31
Identities = 69/156 (44%), Positives = 89/156 (57%), Gaps = 17/156 (10%)
Frame = +2
Query: 347 MQKFFGLPQTGELDQSTIETMRKPRCGNPD---------VANYNFFPRKPKWDKTQITYR 499
MQKF+GL TG+ D T++ MR+PRCG PD V + + KW +IT+
Sbjct: 67 MQKFYGLRVTGKADADTMKAMRRPRCGVPDKFGAEIKANVRRKRYAIQGLKWQHNEITFC 126
Query: 500 IIGYTPDLDPETVDDAFARAFRVWSDVTPLRFSRI--------HDGEADIMINFGRWEHG 655
I YTP + +A +AFRVW TPLRF + H+ +ADIMI F HG
Sbjct: 127 IQNYTPKVGEYATFEAIRKAFRVWESATPLRFREVPYAYIREGHEKQADIMIFFAEGFHG 186
Query: 656 DGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWTL 763
D PFDG+ G LAHA+ PGP +GGD+HFD E WT+
Sbjct: 187 DSTPFDGEGGFLAHAYFPGPNIGGDTHFDSAEPWTV 222
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 124,013,909
Number of extensions: 3696954
Number of successful extensions: 16595
Number of sequences better than 1.0e-05: 38
Number of HSP's gapped: 16338
Number of HSP's successfully gapped: 94
Length of query: 970
Length of database: 18,874,504
Length adjustment: 112
Effective length of query: 858
Effective length of database: 15,140,872
Effective search space: 12990868176
Effective search space used: 12990868176
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PST01_0067_C06
(2912 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032636.1| 72 kDa type IV collagenase precursor [Mus muscu... 1287 0.0
Alignment gi|NP_038627.1| matrix metalloproteinase-9 precursor [Mus muscu... 523 e-148
Alignment gi|NP_062344.1| stromelysin-2 precursor [Mus musculus]. 219 1e-56
Alignment gi|NP_032633.1| collagenase 3 preproprotein [Mus musculus]. 212 1e-54
Alignment gi|NP_034939.1| stromelysin-1 preproprotein [Mus musculus]. 212 2e-54
Alignment gi|NP_034938.3| matrix metalloproteinase-24 [Mus musculus]. 200 6e-51
Alignment gi|NP_062698.2| matrix metalloproteinase-16 precursor [Mus musc... 199 8e-51
Alignment gi|NP_034940.2| matrilysin [Mus musculus]. 190 6e-48
Alignment gi|NP_032634.3| matrix metalloproteinase-14 [Mus musculus]. 189 1e-47
Alignment gi|NP_032631.3| macrophage metalloelastase precursor [Mus muscu... 187 4e-47
>ref|NP_032636.1| 72 kDa type IV collagenase precursor [Mus musculus].
Length = 662
Score = 1287 bits (3331), Expect = 0.0
Identities = 601/661 (90%), Positives = 615/661 (93%), Gaps = 2/661 (0%)
Frame = +2
Query: 122 EARXXXXXXXXXXXXXCVLGCLXXXXXXXXSPIIKFPGDVAPKTDKELAVQYLNTFYGCP 301
EAR CVL CL SPIIKFPGDVAPKTDKELAVQYLNTFYGCP
Sbjct: 2 EARVAWGALAGPLRVLCVLCCLLGRAIAAPSPIIKFPGDVAPKTDKELAVQYLNTFYGCP 61
Query: 302 KESCNLFVLKDTLKKMQKFFGLPQTGELDQSTIETMRKPRCGNPDVANYNFFPRKPKWDK 481
KESCNLFVLKDTLKKMQKFFGLPQTG+LDQ+TIETMRKPRCGNPDVANYNFFPRKPKWDK
Sbjct: 62 KESCNLFVLKDTLKKMQKFFGLPQTGDLDQNTIETMRKPRCGNPDVANYNFFPRKPKWDK 121
Query: 482 TQITYRIIGYTPDLDPETVDDAFARAFRVWSDVTPLRFSRIHDGEADIMINFGRWEHGDG 661
QITYRIIGYTPDLDPETVDDAFARA +VWSDVTPLRFSRIHDGEADIMINFGRWEHGDG
Sbjct: 122 NQITYRIIGYTPDLDPETVDDAFARALKVWSDVTPLRFSRIHDGEADIMINFGRWEHGDG 181
Query: 662 YPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWTLGEGQVVRVKYGNADGEYCKFPFSFNG 841
YPFDGKDGLLAHAFAPG GVGGDSHFDDDELWTLGEGQVVRVKYGNADGEYCKFPF FNG
Sbjct: 182 YPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWTLGEGQVVRVKYGNADGEYCKFPFLFNG 241
Query: 842 KEYNSCTDTGRSDGFLWCSTTYNFDKDGKYGFCPHEALFTMGGNADGQPCKFPFRFQGTS 1021
+EY+SCTDTGRSDGFLWCSTTYNF+KDGKYGFCPHEALFTMGGNADGQPCKFPFRFQGTS
Sbjct: 242 REYSSCTDTGRSDGFLWCSTTYNFEKDGKYGFCPHEALFTMGGNADGQPCKFPFRFQGTS 301
Query: 1022 YNSCTTEGRTDGYRWCGTTEDYDRDKKYGFCPETAMSTVGGNSEGAPCVFPFTFLGNKHE 1201
YNSCTTEGRTDGYRWCGTTEDYDRDKKYGFCPETAMSTVGGNSEGAPCVFPFTFLGNK+E
Sbjct: 302 YNSCTTEGRTDGYRWCGTTEDYDRDKKYGFCPETAMSTVGGNSEGAPCVFPFTFLGNKYE 361
Query: 1202 SCTSAGRSDGKLWCATTANYDDDRKWGFCPDQGYSLFLVAAHEFGHAMGLEHSEDPGALM 1381
SCTSAGR+DGK+WCATT NYDDDRKWGFCPDQGYSLFLVAAHEFGHAMGLEHS+DPGALM
Sbjct: 362 SCTSAGRNDGKVWCATTTNYDDDRKWGFCPDQGYSLFLVAAHEFGHAMGLEHSQDPGALM 421
Query: 1382 APIYTYTKNFRLSHDDVKGIQELYGASP--DIDXXXXXXXXXXXXXXEICKQDIVFDGIS 1555
APIYTYTKNFRLSHDD+KGIQELYG SP D D EICKQDIVFDGI+
Sbjct: 422 APIYTYTKNFRLSHDDIKGIQELYGPSPDADTDTGTGPTPTLGPVTPEICKQDIVFDGIA 481
Query: 1556 QIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAGNE 1735
QIRGEIFFFKDRFIWRTVTPRDKP GPLLVATFWPELPEKIDAVYEAPQEEKAVFFAGNE
Sbjct: 482 QIRGEIFFFKDRFIWRTVTPRDKPTGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAGNE 541
Query: 1736 YWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMD 1915
YWVYSASTLERGYPKPLTSLGLPPDVQ+VDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMD
Sbjct: 542 YWVYSASTLERGYPKPLTSLGLPPDVQQVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMD 601
Query: 1916 PGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSLKSVKFGSIKSDWLG 2095
PGFPKLIAD+WNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSLKSVKFGSIKSDWLG
Sbjct: 602 PGFPKLIADSWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSLKSVKFGSIKSDWLG 661
Query: 2096 C 2098
C
Sbjct: 662 C 662
>ref|NP_038627.1| matrix metalloproteinase-9 precursor [Mus musculus].
Length = 730
Score = 523 bits (1347), Expect = e-148
Identities = 250/438 (57%), Positives = 310/438 (70%), Gaps = 8/438 (1%)
Frame = +2
Query: 179 GCLXXXXXXXXSPIIKFPGDVAPK--TDKELAVQYLNTFYGCPKESCNLFV---LKDTLK 343
GC + FP D+ TD +LA YL YG + + + L+ L
Sbjct: 15 GCSSAAPYQRQPTFVVFPKDLKTSNLTDTQLAEAYLYR-YGYTRAAQMMGEKQSLRPALL 73
Query: 344 KMQKFFGLPQTGELDQSTIETMRKPRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDL 523
+QK LPQTGELD T++ +R PRCG PDV + F + KWD ITY I Y+ DL
Sbjct: 74 MLQKQLSLPQTGELDSQTLKAIRTPRCGVPDVGRFQTF-KGLKWDHHNITYWIQNYSEDL 132
Query: 524 DPETVDDAFARAFRVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAF 703
+ +DDAFARAF VW +V PL F+R++ EADI+I FG EHGDGYPFDGKDGLLAHAF
Sbjct: 133 PRDMIDDAFARAFAVWGEVAPLTFTRVYGPEADIVIQFGVAEHGDGYPFDGKDGLLAHAF 192
Query: 704 APGPGVGGDSHFDDDELWTLGEGQVVRVKYGNADGEYCKFPFSFNGKEYNSCTDTGRSDG 883
PG GV GD+HFDDDELW+LG+G V+ YGN++G C FPF+F G+ Y++CT GR+DG
Sbjct: 193 PPGAGVQGDAHFDDDELWSLGKGVVIPTYYGNSNGAPCHFPFTFEGRSYSACTTDGRNDG 252
Query: 884 FLWCSTTYNFDKDGKYGFCPHEALFTMGGNADGQPCKFPFRFQGTSYNSCTTEGRTDGYR 1063
WCSTT ++DKDGK+GFCP E L+T GN +G+PC FPF F+G SY++CTT+GR+DGYR
Sbjct: 253 TPWCSTTADYDKDGKFGFCPSERLYTEHGNGEGKPCVFPFIFEGRSYSACTTKGRSDGYR 312
Query: 1064 WCGTTEDYDRDKKYGFCPETAMST-VGGNSEGAPCVFPFTFLGNKHESCTSAGRSDGKLW 1240
WC TT +YD+DK YGFCP +T VGGNS G CVFPF FLG ++ SCTS GR DG+LW
Sbjct: 313 WCATTANYDQDKLYGFCPTRVDATVVGGNSAGELCVFPFVFLGKQYSSCTSDGRRDGRLW 372
Query: 1241 CATTANYDDDRKWGFCPDQGYSLFLVAAHEFGHAMGLEHSEDPGALMAPIYTYTKNFRLS 1420
CATT+N+D D+KWGFCPDQGYSLFLVAAHEFGHA+GL+HS P ALM P+Y+Y + F L+
Sbjct: 373 CATTSNFDTDKKWGFCPDQGYSLFLVAAHEFGHALGLDHSSVPEALMYPLYSYLEGFPLN 432
Query: 1421 HDDVKGIQELY--GASPD 1468
DD+ GIQ LY G+ PD
Sbjct: 433 KDDIDGIQYLYGRGSKPD 450
Score = 100 bits (249), Expect = 6e-21
Identities = 56/177 (31%), Positives = 94/177 (53%), Gaps = 1/177 (0%)
Frame = +2
Query: 1523 CKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPM-GPLLVATFWPELPEKIDAVYEAP 1699
C D VFD I++I+G + FFKD + W+ + R P+ GP L A WP LP +D+ +E P
Sbjct: 534 CNVD-VFDAIAEIQGALHFFKDGWYWKFLNHRGSPLQGPFLTARTWPALPATLDSAFEDP 592
Query: 1700 QEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSKNKKTYIFAGDK 1879
Q ++ FF+G + WVY+ T+ P+ L LGL P+V V + K +F+ +
Sbjct: 593 QTKRVFFFSGRQMWVYTGKTVLG--PRSLDKLGLGPEVTHVSGLLP-RRLGKALLFSKGR 649
Query: 1880 FWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQS 2050
WR++ +K+DP + ++ +P N + Q +YF G ++ ++ Q+
Sbjct: 650 VWRFDLKSQKVDPQSVIRVDKEFSGVPWNSHDIFQYQ--DKAYFCHGKFFWRVSFQN 704
>ref|NP_062344.1| stromelysin-2 precursor [Mus musculus].
Length = 476
Score = 219 bits (558), Expect = 1e-56
Identities = 115/286 (40%), Positives = 164/286 (57%), Gaps = 5/286 (1%)
Frame = +2
Query: 1256 NYDDDRKWGFCPDQGYSLFLVAAHEFGHAMGLEHSEDPGALMAPIYTYTK---NFRLSHD 1426
++DDD KW P G +LFLVAAHE GH++GL HS+ +LM P+Y ++ NF LS D
Sbjct: 196 HFDDDEKWTLAPS-GTNLFLVAAHELGHSLGLFHSDKKESLMYPVYRFSTSPANFHLSQD 254
Query: 1427 DVKGIQELYGASPDIDXXXXXXXXXXXXXX--EICKQDIVFDGISQIRGEIFFFKDRFIW 1600
D++GIQ LYGA P D + C + FD +S +RGE+ FFKDR+ W
Sbjct: 255 DIEGIQSLYGAGPSSDATVVPVLSVSPRPETPDKCDPALSFDSVSTLRGEVLFFKDRYFW 314
Query: 1601 RTVTPRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPK 1780
R +P L+ A FWP LP +DA YEA + + F G+++W + ++ GYPK
Sbjct: 315 RRSHWNPEPEFHLISA-FWPTLPSDLDAAYEAHNTDSVLIFKGSQFWAVRGNEVQAGYPK 373
Query: 1781 PLTSLGLPPDVQKVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIP 1960
+ +LG PP V+K+DAA + KKTY F GDK+WR++E + MD GFP+ I D + I
Sbjct: 374 GIHTLGFPPTVKKIDAAVFEKEKKKTYFFVGDKYWRFDETRHVMDKGFPRQITDDFPGIE 433
Query: 1961 DNLDAVVDLQGGGHSYFFKGAYYLKLENQSLKSVKFGSIKSDWLGC 2098
+DAV L G YFF+G+ + + + ++V + WL C
Sbjct: 434 PQVDAV--LHEFGFFYFFRGSSQFEFD-PNARTVTHILKSNSWLLC 476
Score = 203 bits (516), Expect = 7e-52
Identities = 97/174 (55%), Positives = 119/174 (68%), Gaps = 6/174 (3%)
Frame = +2
Query: 260 ELAVQYLNTFYGCPKESCNLFVLKDT------LKKMQKFFGLPQTGELDQSTIETMRKPR 421
+LA QYL +Y K +F KD+ +++MQKF GL TG+LD +T+E M KPR
Sbjct: 32 DLAQQYLEKYYNFKKNEKQIFKRKDSSPVVKKIQEMQKFLGLEMTGKLDSNTMELMHKPR 91
Query: 422 CGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFRVWSDVTPLRFSR 601
CG PDV ++ FP PKW K+ ITYRI+ YTPDL ++VD A +A +VW +VTPL FSR
Sbjct: 92 CGVPDVGGFSTFPGSPKWRKSHITYRIVNYTPDLPRQSVDSAIEKALKVWEEVTPLTFSR 151
Query: 602 IHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWTL 763
I +GEADIMI+F EHGD YPFDG LAHA+ PGPG GD HFDDDE WTL
Sbjct: 152 ISEGEADIMISFAVGEHGDFYPFDGPGQSLAHAYPPGPGFYGDVHFDDDEKWTL 205
>ref|NP_032633.1| collagenase 3 preproprotein [Mus musculus].
Length = 472
Score = 212 bits (540), Expect = 1e-54
Identities = 103/181 (56%), Positives = 124/181 (68%), Gaps = 6/181 (3%)
Frame = +2
Query: 236 DVAPKTDKELAVQYLNTFY------GCPKESCNLFVLKDTLKKMQKFFGLPQTGELDQST 397
D + D A YL ++Y G K+S + D L++MQ FFGL TG+LD T
Sbjct: 30 DDLSEEDLVFAEHYLKSYYHPATLAGILKKSTVTSTV-DRLREMQSFFGLEVTGKLDDPT 88
Query: 398 IETMRKPRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFRVWSD 577
++ MRKPRCG PDV YN FPR KW +T +TYRI+ YTPD+ V+ AF +AF+VWSD
Sbjct: 89 LDIMRKPRCGVPDVGEYNVFPRTLKWSQTNLTYRIVNYTPDMSHSEVEKAFRKAFKVWSD 148
Query: 578 VTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELW 757
VTPL F+RI+DG ADIMI+FG EHGD YPFDG GLLAHAF PGP GGD+HFDDDE W
Sbjct: 149 VTPLNFTRIYDGTADIMISFGTKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETW 208
Query: 758 T 760
T
Sbjct: 209 T 209
Score = 200 bits (508), Expect = 6e-51
Identities = 102/258 (39%), Positives = 148/258 (57%), Gaps = 2/258 (0%)
Frame = +2
Query: 1253 ANYDDDRKWGFCPDQGYSLFLVAAHEFGHAMGLEHSEDPGALMAPIYTYT--KNFRLSHD 1426
A++DDD W +GY+LF+VAAHE GH++GL+HS+DPGALM PIYTYT +F L D
Sbjct: 200 AHFDDDETWT-SSSKGYNLFIVAAHELGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDD 258
Query: 1427 DVKGIQELYGASPDIDXXXXXXXXXXXXXXEICKQDIVFDGISQIRGEIFFFKDRFIWRT 1606
DV+GIQ LYG + E C + D I+ +RGE FKDRF WR
Sbjct: 259 DVQGIQFLYGPGDE------DPNPKHPKTPEKCDPALSLDAITSLRGETMIFKDRFFWR- 311
Query: 1607 VTPRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPL 1786
+ P+ L +FWPELP +DA YE P + F G ++W + + GYP+ +
Sbjct: 312 LHPQQVEAELFLTKSFWPELPNHVDAAYEHPSRDLMFIFRGRKFWALNGYDILEGYPRKI 371
Query: 1787 TSLGLPPDVQKVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDN 1966
+ LG P +V+++ AA ++ KT F+ + W Y++V + MD +P+LI + + I +
Sbjct: 372 SDLGFPKEVKRLSAAVHFENTGKTLFFSENHVWSYDDVNQTMDKDYPRLIEEEFPGIGNK 431
Query: 1967 LDAVVDLQGGGHSYFFKG 2020
+DAV + G+ YFF G
Sbjct: 432 VDAV--YEKNGYIYFFNG 447
>ref|NP_034939.1| stromelysin-1 preproprotein [Mus musculus].
Length = 479
Score = 212 bits (539), Expect = 2e-54
Identities = 114/288 (39%), Positives = 158/288 (54%), Gaps = 6/288 (2%)
Frame = +2
Query: 1253 ANYDDDRKWGFCPDQGYSLFLVAAHEFGHAMGLEHSEDPGALMAPIY---TYTKNFRLSH 1423
A++DDD +W G +LFLVAAHE GH++GL HS ALM P+Y T F LS
Sbjct: 197 AHFDDDERWTE-DVTGTNLFLVAAHELGHSLGLYHSAKAEALMYPVYKSSTDLSRFHLSQ 255
Query: 1424 DDVKGIQELYG---ASPDIDXXXXXXXXXXXXXXEICKQDIVFDGISQIRGEIFFFKDRF 1594
DDV GIQ LYG ASPD+ +C + FD +S +RGE+ FFKDR
Sbjct: 256 DDVDGIQSLYGTPTASPDVLVVPTKSNSLEPETSPMCSSTLFFDAVSTLRGEVLFFKDRH 315
Query: 1595 IWRTVTPRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGY 1774
WR +P L+++FWP LP +DA YE + F GN++W GY
Sbjct: 316 FWRKSLRTPEPEF-YLISSFWPSLPSNMDAAYEVTNRDTVFIFKGNQFWAIRGHEELAGY 374
Query: 1775 PKPLTSLGLPPDVQKVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNA 1954
PK + +LGLP V+K+DAA + + +KTY F DK+WR++E K+ M+PGFP+ IA+ +
Sbjct: 375 PKSIHTLGLPATVKKIDAAISNKEKRKTYFFVEDKYWRFDEKKQSMEPGFPRKIAEDFPG 434
Query: 1955 IPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSLKSVKFGSIKSDWLGC 2098
+ +DAV + G YFF G+ L+ + + K V + W C
Sbjct: 435 VDSRVDAV--FEAFGFLYFFSGSSQLEFD-PNAKKVTHILKSNSWFNC 479
Score = 203 bits (516), Expect = 7e-52
Identities = 95/173 (54%), Positives = 120/173 (69%), Gaps = 6/173 (3%)
Frame = +2
Query: 260 ELAVQYLNTFYGCPKESCNLFVLKDT------LKKMQKFFGLPQTGELDQSTIETMRKPR 421
EL +YL +YG K+ KD+ +++MQKF GL TG+LD +T+E M KPR
Sbjct: 34 ELLQKYLENYYGLAKDVKQFIKKKDSSLIVKKIQEMQKFLGLEMTGKLDSNTMELMHKPR 93
Query: 422 CGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFRVWSDVTPLRFSR 601
CG PDV ++ FP PKW K+ ITYRI+ YTPDL ++VD A +A +VW +VTPL FSR
Sbjct: 94 CGVPDVGGFSTFPGSPKWRKSHITYRIVNYTPDLPRQSVDSAIEKALKVWEEVTPLTFSR 153
Query: 602 IHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWT 760
I +GEADIMI+F EHGD PFDG +LAHA+APGPG+ GD+HFDDDE WT
Sbjct: 154 ISEGEADIMISFAVGEHGDFVPFDGPGTVLAHAYAPGPGINGDAHFDDDERWT 206
>ref|NP_034938.3| matrix metalloproteinase-24 [Mus musculus].
Length = 618
Score = 200 bits (508), Expect = 6e-51
Identities = 120/318 (37%), Positives = 162/318 (50%), Gaps = 37/318 (11%)
Frame = +2
Query: 1256 NYDDDRKW--GFCPDQGYSLFLVAAHEFGHAMGLEHSEDPGALMAPIYTY--TKNFRLSH 1423
++D D W G G LFLVA HE GHA+GLEHS DP A+MAP Y Y T NF+L
Sbjct: 230 HFDSDEPWTLGNANHDGNDLFLVAVHELGHALGLEHSNDPSAIMAPFYQYMETHNFKLPQ 289
Query: 1424 DDVKGIQELYGA--------------------SPDIDXXXXXXXXXXXXXXE-------- 1519
DD++GIQ++YG SP +
Sbjct: 290 DDLQGIQKIYGPPAEPLEPTRPLPTLPVRRIHSPSERKHERHPRPPRPPLGDRPSTPGAK 349
Query: 1520 --ICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYE 1693
IC D F+ ++ RGE+F FKDR+ WR R + P+ + FW LP +IDA YE
Sbjct: 350 PNIC--DGNFNTVALFRGEMFVFKDRWFWRLRNNRVQEGYPMQIEQFWKGLPARIDAAYE 407
Query: 1694 APQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSKNKKTYIFAG 1873
+ + VFF G++YWV+ T+E GYP L LG + +D A W KTY F G
Sbjct: 408 RA-DGRFVFFKGDKYWVFKEVTVEPGYPHSLGELGSCLPREGIDTALRWEPVGKTYFFKG 466
Query: 1874 DKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSL 2053
+++WRY+E ++ DPG+PK I W IP + G ++YF+KG Y K +NQ L
Sbjct: 467 ERYWRYSEERRATDPGYPKPIT-VWKGIPQAPQGAFISKEGYYTYFYKGRDYWKFDNQKL 525
Query: 2054 KSVKFG---SIKSDWLGC 2098
SV+ G +I DW+GC
Sbjct: 526 -SVEPGYPRNILRDWMGC 542
Score = 147 bits (370), Expect = 6e-35
Identities = 78/161 (48%), Positives = 95/161 (59%), Gaps = 14/161 (8%)
Frame = +2
Query: 326 LKDTLKKMQKFFGLPQTGELDQSTIETMRKPRCGNPDVA-------NYNFFPRKPKWDKT 484
L+ + MQ+F+G+P TG LDQ+TIE M+KPRCG PD N + KW +
Sbjct: 80 LQSAVSTMQQFYGIPVTGVLDQTTIEWMKKPRCGVPDHPHLSRRRRNKRYALTGQKWRQK 139
Query: 485 QITYRIIGYTPDLDPETVDDAFARAFRVWSDVTPLRFSRI--HD-----GEADIMINFGR 643
ITY I YTP + A +AF VW VTPL F + H+ EADIMI F
Sbjct: 140 HITYSIHNYTPKVGELDTRKAIRQAFDVWQKVTPLTFEEVPYHEIKSDRKEADIMIFFAS 199
Query: 644 WEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWTLG 766
HGD PFDG+ G LAHA+ PGPG+GGD+HFD DE WTLG
Sbjct: 200 GFHGDSSPFDGEGGFLAHAYFPGPGIGGDTHFDSDEPWTLG 240
>ref|NP_062698.2| matrix metalloproteinase-16 precursor [Mus musculus].
Length = 607
Score = 199 bits (507), Expect = 8e-51
Identities = 124/317 (39%), Positives = 165/317 (52%), Gaps = 36/317 (11%)
Frame = +2
Query: 1256 NYDDDRKW--GFCPDQGYSLFLVAAHEFGHAMGLEHSEDPGALMAPIYTY--TKNFRLSH 1423
++D D W G G LFLVA HE GHA+GLEHS DP A+MAP Y Y T NF+L +
Sbjct: 221 HFDSDEPWTLGNPNHDGNDLFLVAVHELGHALGLEHSNDPTAIMAPFYQYMETDNFKLPN 280
Query: 1424 DDVKGIQELYGASPDI------------------------DXXXXXXXXXXXXXXEICKQ 1531
DD++GIQ++YG I D K
Sbjct: 281 DDLQGIQKIYGPPDKIPPPTRPLPTVPPHRSVPPADPRRHDRPKPPRPPTGRPSYPGAKP 340
Query: 1532 DIV---FDGISQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYEAPQ 1702
+I F+ ++ +R E+F FKD++ WR R P+ + FW LP IDAVYE
Sbjct: 341 NICDGNFNTLAILRREMFVFKDQWFWRVRNNRVMDGYPMQITYFWRGLPPSIDAVYEN-S 399
Query: 1703 EEKAVFFAGNEYWVYSASTLERGYPKPLTSL--GLPPDVQKVDAAFNWSKNKKTYIFAGD 1876
+ VFF GN+YWV+ +TL+ GYP L +L G+PP +D+A W KTY F GD
Sbjct: 400 DGNFVFFKGNKYWVFKDTTLQPGYPHDLITLGNGIPP--HGIDSAIWWEDVGKTYFFKGD 457
Query: 1877 KFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSLK 2056
++WRY+E K MDPG+PK I W IP++ + G +YF+KG Y K NQ LK
Sbjct: 458 RYWRYSEEMKTMDPGYPKPIT-IWKGIPESPQGAFVHKENGFTYFYKGKEYWKFNNQILK 516
Query: 2057 SVKFG---SIKSDWLGC 2098
V+ G SI D++GC
Sbjct: 517 -VEPGYPRSILKDFMGC 532
Score = 137 bits (346), Expect = 4e-32
Identities = 76/164 (46%), Positives = 100/164 (60%), Gaps = 17/164 (10%)
Frame = +2
Query: 326 LKDTLKKMQKFFGLPQTGELDQSTIETMRKPRCGNPDV----ANYNFFPRK-----PKWD 478
++ L MQ+F+G+ TG++D++TI+ M+KPRCG PD + +N ++ KW
Sbjct: 69 MQSALAAMQQFYGINMTGKVDRNTIDWMKKPRCGVPDQTRGSSKFNIRRKRYALTGQKWQ 128
Query: 479 KTQITYRIIGYTPDL-DPETVDDAFARAFRVWSDVTPLRF-----SRIHDG--EADIMIN 634
ITY I TP + DPET A RAF VW +VTPL F S + +G + DI I
Sbjct: 129 HKHITYSIKNVTPKVGDPET-RRAIRRAFDVWQNVTPLTFEEVPYSELENGKRDVDITII 187
Query: 635 FGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWTLG 766
F HGD PFDG+ G LAHA+ PGPG+GGD+HFD DE WTLG
Sbjct: 188 FASGFHGDSSPFDGEGGFLAHAYFPGPGIGGDTHFDSDEPWTLG 231
>ref|NP_034940.2| matrilysin [Mus musculus].
Length = 267
Score = 190 bits (482), Expect = 6e-48
Identities = 94/185 (50%), Positives = 115/185 (62%)
Frame = +2
Query: 215 PIIKFPGDVAPKTDKELAVQYLNTFYGCPKESCNLFVLKDTLKKMQKFFGLPQTGELDQS 394
P+ + GDV+ E A YL FY ++ + L D LK+MQKFFGLP TG+L
Sbjct: 22 PLSQEAGDVSAH-QWEQAQNYLRKFYPHDSKTKKVNSLVDNLKEMQKFFGLPMTGKLSPY 80
Query: 395 TIETMRKPRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFRVWS 574
+E M+KPRCG PDVA Y+ P PKW +TYRI+ YT DL VD +A R+WS
Sbjct: 81 IMEIMQKPRCGVPDVAEYSLMPNSPKWHSRIVTYRIVSYTSDLPRIVVDQIVKKALRMWS 140
Query: 575 DVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDEL 754
PL F R+ G ADI+I F R +HGD +PFDG L HAFAPGPG+GGD+HFD DE
Sbjct: 141 MQIPLNFKRVSWGTADIIIGFARRDHGDSFPFDGPGNTLGHAFAPGPGLGGDAHFDKDEY 200
Query: 755 WTLGE 769
WT GE
Sbjct: 201 WTDGE 205
Score = 71.2 bits (173), Expect = 4e-12
Identities = 39/98 (39%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Frame = +2
Query: 1169 FPFTFLGNKHESCTSAGRSDGKLWCATTANYDDDRKWGFCPDQGYSLFLVAAHEFGHAMG 1348
FPF GN + G G A++D D W D G + A HEFGH++G
Sbjct: 170 FPFDGPGNTLGHAFAPGPGLGG-----DAHFDKDEYWTDGEDAGVNFLFAATHEFGHSLG 224
Query: 1349 LEHSEDPGALMAPIY--TYTKNFRLSHDDVKGIQELYG 1456
L HS PG +M P Y Y+++F L+ DD+ GIQ+LYG
Sbjct: 225 LSHSSVPGTVMYPTYQRDYSEDFSLTKDDIAGIQKLYG 262
>ref|NP_032634.3| matrix metalloproteinase-14 [Mus musculus].
Length = 582
Score = 189 bits (480), Expect = 1e-47
Identities = 112/287 (39%), Positives = 154/287 (53%), Gaps = 17/287 (5%)
Frame = +2
Query: 1298 GYSLFLVAAHEFGHAMGLEHSEDPGALMAPIYTY--TKNFRLSHDDVKGIQELYGASPDI 1471
G +FLVA HE GHA+GLEHS DP A+MAP Y + T+NF L DD +GIQ+LYG+
Sbjct: 230 GNDIFLVAVHELGHALGLEHSNDPSAIMAPFYQWMDTENFVLPDDDRRGIQQLYGSKSGS 289
Query: 1472 DXXXXXXXXXXXXXX------------EICKQDIVFDGISQIRGEIFFFKDRFIWRTVTP 1615
IC D FD ++ +RGE+F FK+R+ WR
Sbjct: 290 PTKMPPQPRTTSRPSVPDKPKNPAYGPNIC--DGNFDTVAMLRGEMFVFKERWFWRVRNN 347
Query: 1616 RDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPLTSL 1795
+ P+ + FW LP I+ YE ++ K VFF G+++WV+ ++LE GYPK + L
Sbjct: 348 QVMDGYPMPIGQFWRGLPASINTAYER-KDGKFVFFKGDKHWVFDEASLEPGYPKHIKEL 406
Query: 1796 GLPPDVQKVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDA 1975
G K+DAA W N KTY F G+K++R+NE + +D +PK I W IP++
Sbjct: 407 GRGLPTDKIDAALFWMPNGKTYFFRGNKYYRFNEEFRAVDSEYPKNI-KVWEGIPESPRG 465
Query: 1976 VVDLQGGGHSYFFKGAYYLKLENQSLKSVKFGSIKS---DWLGC*AG 2107
+YF+KG Y K NQ LK V+ G KS DW+GC +G
Sbjct: 466 SFMGSDEVFTYFYKGNKYWKFNNQKLK-VEPGYPKSALRDWMGCPSG 511
Score = 136 bits (343), Expect = 8e-32
Identities = 70/163 (42%), Positives = 91/163 (55%), Gaps = 17/163 (10%)
Frame = +2
Query: 326 LKDTLKKMQKFFGLPQTGELDQSTIETMRKPRCGNPD---------VANYNFFPRKPKWD 478
L + MQKF+GL TG+ D +T+ MR+PRCG PD V + + KW
Sbjct: 61 LSAAIAAMQKFYGLQVTGKADLATMMAMRRPRCGVPDKFGTEIKANVRRKRYAIQGLKWQ 120
Query: 479 KTQITYRIIGYTPDLDPETVDDAFARAFRVWSDVTPLRFSRI--------HDGEADIMIN 634
+IT+ I YTP + +A +AFRVW TPLRF + H+ +ADIMI
Sbjct: 121 HNEITFCIQNYTPKVGEYATFEAIRKAFRVWESATPLRFREVPYAYIREGHEKQADIMIL 180
Query: 635 FGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWTL 763
F HGD PFDG+ G LAHA+ PGP +GGD+HFD E WT+
Sbjct: 181 FAEGFHGDSTPFDGEGGFLAHAYFPGPNIGGDTHFDSAEPWTV 223
>ref|NP_032631.3| macrophage metalloelastase precursor [Mus musculus].
Length = 473
Score = 187 bits (475), Expect = 4e-47
Identities = 94/180 (52%), Positives = 115/180 (63%), Gaps = 7/180 (3%)
Frame = +2
Query: 242 APKTDKELAVQYLNTFYGCPKE-------SCNLFVLKDTLKKMQKFFGLPQTGELDQSTI 400
AP D E A YL+ FY K+ N LK+ L++MQ+FFGL TG+LD ST+
Sbjct: 29 APMNDSEFAEWYLSRFYDYGKDRIPMTKTKTNRNFLKEKLQEMQQFFGLEATGQLDNSTL 88
Query: 401 ETMRKPRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFRVWSDV 580
M PRCG PDV + P++ +W K +TYRI YTPD+ E VD F +AF+VWSDV
Sbjct: 89 AIMHIPRCGVPDVQHLRAVPQRSRWMKRYLTYRIYNYTPDMKREDVDYIFQKAFQVWSDV 148
Query: 581 TPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWT 760
TPLRF ++H EADIMI F HGD FDGK G LAHAF PGPG+ GD+HFD+ E WT
Sbjct: 149 TPLRFRKLHKDEADIMILFAFGAHGDFNYFDGKGGTLAHAFYPGPGIQGDAHFDEAETWT 208
Score = 171 bits (434), Expect = 2e-42
Identities = 100/285 (35%), Positives = 146/285 (51%), Gaps = 3/285 (1%)
Frame = +2
Query: 1253 ANYDDDRKWGFCPDQGYSLFLVAAHEFGHAMGLEHSEDPGALMAPIYTYTK--NFRLSHD 1426
A++D+ W QG +LFLVA HE GH++GL+HS +P ++M P Y Y FRLS D
Sbjct: 199 AHFDEAETWTKS-FQGTNLFLVAVHELGHSLGLQHSNNPKSIMYPTYRYLNPSTFRLSAD 257
Query: 1427 DVKGIQELYGASPDIDXXXXXXXXXXXXXXEICKQDIVFDGISQIRGEIFFFKDRFIWRT 1606
D++ IQ LYGA C Q + FD ++ + +IFFFKD F W
Sbjct: 258 DIRNIQSLYGAP----VKPPSLTKPSSPPSTFCHQSLSFDAVTTVGEKIFFFKDWFFWWK 313
Query: 1607 VTPRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPL 1786
+ P +++ WP +P I A YE + F +YW+ + E YP+ +
Sbjct: 314 L-PGSPATNITSISSIWPSIPSGIQAAYEIESRNQLFLFKDEKYWLINNLVPEPHYPRSI 372
Query: 1787 TSLGLPPDVQKVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDN 1966
SLG V+KVDAA +K Y F +WRY+ ++ MDP +PKLI+ + I
Sbjct: 373 YSLGFSASVKKVDAAVFDPLRQKVYFFVDKHYWRYDVRQELMDPAYPKLISTHFPGIKPK 432
Query: 1967 LDAVVDLQGGGHSYFFKGAYYLKLENQSLKSVKFGSIKS-DWLGC 2098
+DAV+ + H Y F+GAY L+ + + K ++KS W GC
Sbjct: 433 IDAVLYFK--RHYYIFQGAYQLEYDPLFRRVTK--TLKSTSWFGC 473
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 102,095,460
Number of extensions: 2982206
Number of successful extensions: 13019
Number of sequences better than 1.0e-05: 38
Number of HSP's gapped: 12741
Number of HSP's successfully gapped: 89
Length of query: 970
Length of database: 15,617,559
Length adjustment: 111
Effective length of query: 859
Effective length of database: 12,283,563
Effective search space: 10551580617
Effective search space used: 10551580617
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PST01_0067_C06
(2912 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999357.1| 72 kDa type IV collagenase [Sus scrofa]. 1321 0.0
Alignment gi|NP_001033093.1| matrix metalloproteinase-9 [Sus scrofa]. 531 e-151
Alignment gi|XP_003129856.1| PREDICTED: collagenase 3 [Sus scrofa]. 215 1e-55
Alignment gi|NP_001159780.1| stromelysin-1 [Sus scrofa]. 208 2e-53
Alignment gi|XP_003360593.1| PREDICTED: matrix metalloproteinase-24 [Sus ... 201 1e-51
Alignment gi|XP_003357310.1| PREDICTED: neutrophil collagenase-like [Sus ... 192 1e-48
Alignment gi|XP_003129864.1| PREDICTED: neutrophil collagenase [Sus scrof... 192 1e-48
Alignment gi|NP_001159701.1| interstitial collagenase [Sus scrofa]. 191 2e-48
Alignment gi|NP_001093408.1| macrophage metalloelastase [Sus scrofa]. 190 4e-48
Alignment gi|NP_999404.1| matrix metalloproteinase-14 precursor [Sus scro... 187 2e-47
>ref|NP_999357.1| 72 kDa type IV collagenase [Sus scrofa].
Length = 661
Score = 1321 bits (3419), Expect = 0.0
Identities = 621/661 (93%), Positives = 621/661 (93%)
Frame = +2
Query: 116 MTEARXXXXXXXXXXXXXCVLGCLXXXXXXXXSPIIKFPGDVAPKTDKELAVQYLNTFYG 295
MTEAR CVLGCL SPIIKFPGDVAPKTDKELAVQYLNTFYG
Sbjct: 1 MTEARGARGALAGPLRALCVLGCLLGRAAAAPSPIIKFPGDVAPKTDKELAVQYLNTFYG 60
Query: 296 CPKESCNLFVLKDTLKKMQKFFGLPQTGELDQSTIETMRKPRCGNPDVANYNFFPRKPKW 475
CPKESCNLFVLKDTLKKMQKFFGLPQTGELDQSTIETMRKPRCGNPDVANYNFFPRKPKW
Sbjct: 61 CPKESCNLFVLKDTLKKMQKFFGLPQTGELDQSTIETMRKPRCGNPDVANYNFFPRKPKW 120
Query: 476 DKTQITYRIIGYTPDLDPETVDDAFARAFRVWSDVTPLRFSRIHDGEADIMINFGRWEHG 655
DKTQITYRIIGYTPDLDPETVDDAFARAFRVWSDVTPLRFSRIHDGEADIMINFGRWEHG
Sbjct: 121 DKTQITYRIIGYTPDLDPETVDDAFARAFRVWSDVTPLRFSRIHDGEADIMINFGRWEHG 180
Query: 656 DGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWTLGEGQVVRVKYGNADGEYCKFPFSF 835
DGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWTLGEGQVVRVKYGNADGEYCKFPFSF
Sbjct: 181 DGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWTLGEGQVVRVKYGNADGEYCKFPFSF 240
Query: 836 NGKEYNSCTDTGRSDGFLWCSTTYNFDKDGKYGFCPHEALFTMGGNADGQPCKFPFRFQG 1015
NGKEYNSCTDTGRSDGFLWCSTTYNFDKDGKYGFCPHEALFTMGGNADGQPCKFPFRFQG
Sbjct: 241 NGKEYNSCTDTGRSDGFLWCSTTYNFDKDGKYGFCPHEALFTMGGNADGQPCKFPFRFQG 300
Query: 1016 TSYNSCTTEGRTDGYRWCGTTEDYDRDKKYGFCPETAMSTVGGNSEGAPCVFPFTFLGNK 1195
TSYNSCTTEGRTDGYRWCGTTEDYDRDKKYGFCPETAMSTVGGNSEGAPCVFPFTFLGNK
Sbjct: 301 TSYNSCTTEGRTDGYRWCGTTEDYDRDKKYGFCPETAMSTVGGNSEGAPCVFPFTFLGNK 360
Query: 1196 HESCTSAGRSDGKLWCATTANYDDDRKWGFCPDQGYSLFLVAAHEFGHAMGLEHSEDPGA 1375
HESCTSAGRSDGKLWCATTANYDDDRKWGFCPDQGYSLFLVAAHEFGHAMGLEHSEDPGA
Sbjct: 361 HESCTSAGRSDGKLWCATTANYDDDRKWGFCPDQGYSLFLVAAHEFGHAMGLEHSEDPGA 420
Query: 1376 LMAPIYTYTKNFRLSHDDVKGIQELYGASPDIDXXXXXXXXXXXXXXEICKQDIVFDGIS 1555
LMAPIYTYTKNFRLSHDDVKGIQELYGASPDID EICKQDIVFDGIS
Sbjct: 421 LMAPIYTYTKNFRLSHDDVKGIQELYGASPDIDTGTGPTPTLGPVTPEICKQDIVFDGIS 480
Query: 1556 QIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAGNE 1735
QIRGEIFFFKDRFIWRTVTPRDKPM ATFWPELPEKIDAVYEAPQEEKAVFFAGNE
Sbjct: 481 QIRGEIFFFKDRFIWRTVTPRDKPMVAPAGATFWPELPEKIDAVYEAPQEEKAVFFAGNE 540
Query: 1736 YWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMD 1915
YWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMD
Sbjct: 541 YWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMD 600
Query: 1916 PGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSLKSVKFGSIKSDWLG 2095
PGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSLKSVKFGSIKSDWLG
Sbjct: 601 PGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSLKSVKFGSIKSDWLG 660
Query: 2096 C 2098
C
Sbjct: 661 C 661
>ref|NP_001033093.1| matrix metalloproteinase-9 [Sus scrofa].
Length = 708
Score = 531 bits (1368), Expect = e-151
Identities = 280/589 (47%), Positives = 356/589 (60%), Gaps = 16/589 (2%)
Frame = +2
Query: 173 VLGCLXXXXXXXXSPIIKFPGDVAPKT-DKELAVQYLNTF-YGCPKESCNLFV-LKDTLK 343
VLGC + ++ FPGD+ D++LA +YL + Y E + L+ LK
Sbjct: 13 VLGCSAAPKPRQPTFVV-FPGDLRTNLIDRQLAEEYLYRYGYTQVAEMTDRKQSLEPALK 71
Query: 344 KMQKFFGLPQTGELDQSTIETMRKPRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDL 523
+Q+ LPQTGELD +T+ MR PRCG PD+ + F KW +TY I Y+ DL
Sbjct: 72 LLQQRLSLPQTGELDTTTLNAMRAPRCGVPDLGKFQTFEGDLKWHHHDMTYWIQNYSEDL 131
Query: 524 DPETVDDAFARAFRVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAF 703
+ +DDAF RAF +WS+ TPL +R++ ADI+I FG EHGDGYPFDGKDGLLAHAF
Sbjct: 132 SRDVIDDAFVRAFSLWSEATPLNCTRVYGPNADIVIQFGVKEHGDGYPFDGKDGLLAHAF 191
Query: 704 APGPGVGGDSHFDDDELWTLGEGQVVRVKYGNADGEYCKFPFSFNGKEYNSCTDTGRSDG 883
PGPG+ GD+HFDD+ELW+LG+G VV +GNA G C FPF+F G+ Y++CT GRSD
Sbjct: 192 PPGPGIQGDAHFDDEELWSLGKGVVVPTYFGNAKGAACHFPFTFEGRSYSACTTDGRSDD 251
Query: 884 FLWCSTTYNFDKDGKYGFCPHEALFTMGGNADGQPCKFPFRFQGTSYNSCTTEGRTDGYR 1063
LWCSTT ++D D ++GFCP E LFT GNADG+PC FPF F+G SY+SCTT+GR+DGYR
Sbjct: 252 MLWCSTTADYDTDRQFGFCPSERLFTRDGNADGKPCVFPFTFEGRSYSSCTTDGRSDGYR 311
Query: 1064 WCGTTEDYDRDKKYGFCPETAMSTV-GGNSEGAPCVFPFTFLGNKHESCTSAGRSDGKLW 1240
WCGTT +YD+DK YGFCP A STV GGNS G CVFPFTFLG ++ +CT GRSDG LW
Sbjct: 312 WCGTTANYDQDKLYGFCPTRADSTVTGGNSAGDLCVFPFTFLGKEYSACTREGRSDGHLW 371
Query: 1241 CATTANYDDDRKWGFCPDQGYSLFLVAAHEFGHAMGLEHSEDPGALMAPIYTYTKNFRLS 1420
CATT+N+D D+KWGFCPDQGYSLFLVAAHEFGHA+GL+HS P ALM P+Y++T+ L
Sbjct: 372 CATTSNFDKDKKWGFCPDQGYSLFLVAAHEFGHALGLDHSTVPEALMYPMYSFTEEHPLH 431
Query: 1421 HDDVKGIQELYGASPDIDXXXXXXXXXXXXXXEICKQDIVFDGISQIRGEIFFFKDRFIW 1600
DDV+GIQ LYG+ P + + G R +
Sbjct: 432 EDDVRGIQYLYGSRPKPE--PRPPTTTTAEPQSTVPPTVCVTGPPTTRPS----ERSTAG 485
Query: 1601 RTVTPRDKPMGPLLVATFWPELPEKIDA----------VYEAPQE--EKAVFFAGNEYWV 1744
T P P GP T P + +++A E + FF +YW
Sbjct: 486 PTGPPSAGPTGP---PTAGPSAAPTVSLGPGEDICNVDIFDAIAEIRNRLHFFKDGKYWR 542
Query: 1745 YSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSKNKKTYIFAGDKFWRY 1891
S R L P K+D+AF +KK + F+G + W Y
Sbjct: 543 LSEGKEHRVQGPFLIKDRWPALPHKLDSAFEEPLSKKIFFFSGRQVWVY 591
Score = 97.8 bits (242), Expect = 3e-20
Identities = 59/197 (29%), Positives = 103/197 (52%), Gaps = 3/197 (1%)
Frame = +2
Query: 1517 EICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRD-KPMGPLLVATFWPELPEKIDAVYE 1693
+IC DI FD I++IR + FFKD WR ++ + GP L+ WP LP K+D+ +E
Sbjct: 515 DICNVDI-FDAIAEIRNRLHFFKDGKYWRLSEGKEHRVQGPFLIKDRWPALPHKLDSAFE 573
Query: 1694 APQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSKNKKTYIFAG 1873
P +K FF+G + WVY+ +++ P+ L LGL P+V +V A + K +F+
Sbjct: 574 EPLSKKIFFFSGRQVWVYTGASVLG--PRRLDKLGLGPEVARVTGALP-REAGKVLLFSQ 630
Query: 1874 DKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQS- 2050
FWR++ +K+D + + +P N + Q +YF + ++ ++ +++
Sbjct: 631 QNFWRFDVKTQKVDSRSATRVDQMFPGVPLNTHDIFQYQ--EKAYFCQARFFWRVSSRNE 688
Query: 2051 LKSVKF-GSIKSDWLGC 2098
+ V + G + D L C
Sbjct: 689 VNQVDYVGYVTFDLLKC 705
>ref|XP_003129856.1| PREDICTED: collagenase 3 [Sus scrofa].
Length = 470
Score = 215 bits (548), Expect = 1e-55
Identities = 105/182 (57%), Positives = 130/182 (71%), Gaps = 6/182 (3%)
Frame = +2
Query: 233 GDVAPKTDKELAVQYLNTFY------GCPKESCNLFVLKDTLKKMQKFFGLPQTGELDQS 394
GD++ + D +LA YL ++Y G K++ V+ D LK+MQ FFGL TG+LD +
Sbjct: 28 GDLSEE-DFQLAENYLKSYYYPMNPAGILKKTAASSVV-DRLKEMQSFFGLEVTGKLDDN 85
Query: 395 TIETMRKPRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFRVWS 574
T++ M+KPRCG PDV YN FPR KW + +TYRI+ YTPDL V+ AF +AF+VWS
Sbjct: 86 TLDIMKKPRCGVPDVGEYNVFPRTLKWSQMNLTYRIVNYTPDLTHSEVEKAFKKAFKVWS 145
Query: 575 DVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDEL 754
DVTPL F+RIH+G ADIMI+FG EHGD YPFDG GLLAHAF PGP GGD+HFDDDE
Sbjct: 146 DVTPLNFTRIHNGTADIMISFGTKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDET 205
Query: 755 WT 760
WT
Sbjct: 206 WT 207
Score = 207 bits (527), Expect = 3e-53
Identities = 105/258 (40%), Positives = 150/258 (58%), Gaps = 2/258 (0%)
Frame = +2
Query: 1253 ANYDDDRKWGFCPDQGYSLFLVAAHEFGHAMGLEHSEDPGALMAPIYTYT--KNFRLSHD 1426
A++DDD W +GY+LFLVAAHEFGH++GL+HS+DPGALM PIYTYT +F L D
Sbjct: 198 AHFDDDETWT-SSSKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDD 256
Query: 1427 DVKGIQELYGASPDIDXXXXXXXXXXXXXXEICKQDIVFDGISQIRGEIFFFKDRFIWRT 1606
DV+GIQ LYG + + C + D I+ +RGE FKDRF WR
Sbjct: 257 DVQGIQSLYGPGDE------DPNPKHPKTPDKCDPSLSLDAITSLRGETLIFKDRFFWR- 309
Query: 1607 VTPRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPL 1786
+ P+ L +FWPELP +IDA YE P + F G ++W + + GYPK +
Sbjct: 310 LHPQQVDAELFLTKSFWPELPNRIDAAYEHPTRDLIFIFRGRKFWALNGYDILEGYPKKI 369
Query: 1787 TSLGLPPDVQKVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDN 1966
+ LG +V+++ AA ++ KT F+G++ W Y++ + MD +P+LI + + I D
Sbjct: 370 SELGFSKEVKRISAAVHFEATGKTLFFSGNQVWSYDDTNQMMDKDYPRLIEENFPGIGDK 429
Query: 1967 LDAVVDLQGGGHSYFFKG 2020
+DAV + G+ YFF G
Sbjct: 430 VDAV--YEKNGYIYFFNG 445
>ref|NP_001159780.1| stromelysin-1 [Sus scrofa].
Length = 477
Score = 208 bits (529), Expect = 2e-53
Identities = 115/288 (39%), Positives = 158/288 (54%), Gaps = 6/288 (2%)
Frame = +2
Query: 1253 ANYDDDRKWGFCPDQGYSLFLVAAHEFGHAMGLEHSEDPGALMAPIY---TYTKNFRLSH 1423
A++DDD +W G +LFLVAAHE GH++GL HS D ALM P+Y T FRLS
Sbjct: 195 AHFDDDEQWTK-DTSGVNLFLVAAHELGHSLGLFHSTDSNALMYPVYNPLTDLARFRLSQ 253
Query: 1424 DDVKGIQELYG---ASPDIDXXXXXXXXXXXXXXEICKQDIVFDGISQIRGEIFFFKDRF 1594
DDV GIQ LYG ASP C + FD IS +RGEI FFKDR
Sbjct: 254 DDVNGIQSLYGPPPASPPEPVEPTESTPQKPGTPATCDPALSFDAISTLRGEILFFKDRH 313
Query: 1595 IWRTVTPRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGY 1774
WR R +P L +++FWP LP IDA E ++ F G ++W + ++ GY
Sbjct: 314 FWRKSFRRLEPEFHL-ISSFWPPLPSSIDAACEVISKDTVFIFKGTQFWAIRGNDVQPGY 372
Query: 1775 PKPLTSLGLPPDVQKVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNA 1954
P+ + +LG P V+K+DAA + + KKTY F DK+WR++E ++ M+PGFPK I + +
Sbjct: 373 PRSIHTLGFPSTVKKIDAAISDKETKKTYFFVEDKYWRFDEKRQSMEPGFPKQIVEDFPG 432
Query: 1955 IPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSLKSVKFGSIKSDWLGC 2098
+ +DAV + G YFF G+ + + + K V + WL C
Sbjct: 433 VEPKVDAV--FEAFGFFYFFNGSSQFEFD-PNAKKVTHVLKSNKWLNC 477
Score = 182 bits (463), Expect = 7e-46
Identities = 85/169 (50%), Positives = 112/169 (66%), Gaps = 6/169 (3%)
Frame = +2
Query: 272 QYLNTFYGCPKESCNLFVLKDT------LKKMQKFFGLPQTGELDQSTIETMRKPRCGNP 433
+YL +Y K+ + KD+ +++MQKF GL TG+LD +T+E M KPRCG P
Sbjct: 36 KYLEDYYNLTKDVKQVVRRKDSSLVVKKIQEMQKFLGLEVTGKLDSNTLEVMHKPRCGVP 95
Query: 434 DVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFRVWSDVTPLRFSRIHDG 613
DV ++ FP PKW K +TYRI+ YT DL +D +A ++W +VTPL FS+I +G
Sbjct: 96 DVGYFSTFPGLPKWRKNDLTYRIVNYTLDLPRSVIDSTIEKALKIWEEVTPLTFSKISEG 155
Query: 614 EADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWT 760
EADIMI F EHGD PFDG +LAHA+APGPG+ G++HFDDDE WT
Sbjct: 156 EADIMITFAVREHGDFSPFDGPGKVLAHAYAPGPGIYGEAHFDDDEQWT 204
>ref|XP_003360593.1| PREDICTED: matrix metalloproteinase-24 [Sus scrofa].
Length = 393
Score = 201 bits (512), Expect = 1e-51
Identities = 116/318 (36%), Positives = 160/318 (50%), Gaps = 24/318 (7%)
Frame = +2
Query: 1217 GRSDGKLWCATTANYDDDRKWGFCPDQ----GYSLFLVAAHEFGHAMGLEHSEDPGALMA 1384
GR W + + + CP G LFLVA HE GHA+GLEHS DP A+MA
Sbjct: 4 GRGPACPWVSEDDHQPATPRIPLCPSHSLRLGNDLFLVAVHELGHALGLEHSNDPSAIMA 63
Query: 1385 PIYTY--TKNFRLSHDDVKGIQELYGASPD----------------IDXXXXXXXXXXXX 1510
P Y Y T NF+L DD++GIQ++YG +
Sbjct: 64 PFYQYMETHNFKLPQDDLQGIQKIYGPPAEPLEPTXXXXXXXXXXXXXPPLGDRPASPGA 123
Query: 1511 XXEICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPEKIDAVY 1690
IC D F+ ++ RGE+F FKDR+ WR R + P+ + FW LP +IDA Y
Sbjct: 124 KPNIC--DGNFNTVALFRGEMFVFKDRWFWRLRNNRVQEGYPMQIEQFWKGLPARIDAAY 181
Query: 1691 EAPQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSKNKKTYIFA 1870
E + + VFF G++YWV+ T+E GYP L LG + +D A W KTY F
Sbjct: 182 ERA-DGRFVFFKGDKYWVFKEVTVEPGYPHSLGELGSCLPREGIDTALRWEPVGKTYFFK 240
Query: 1871 GDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQ- 2047
G+++WRY+E ++ DPG+PK I W IP + G ++YF+KG Y K +NQ
Sbjct: 241 GERYWRYSEERRATDPGYPKPIT-VWKGIPQAPQGAFISKEGYYTYFYKGRDYWKFDNQK 299
Query: 2048 -SLKSVKFGSIKSDWLGC 2098
S++ +I DW+GC
Sbjct: 300 LSVEXXXXXNILRDWMGC 317
>ref|XP_003357310.1| PREDICTED: neutrophil collagenase-like [Sus scrofa].
Length = 468
Score = 192 bits (487), Expect = 1e-48
Identities = 102/283 (36%), Positives = 152/283 (53%), Gaps = 2/283 (0%)
Frame = +2
Query: 1256 NYDDDRKWGFCPDQGYSLFLVAAHEFGHAMGLEHSEDPGALMAPIYTYTK--NFRLSHDD 1429
++D + W + Y+LFLVAAHEFGH++GL HS DPGALM P Y +++ + L DD
Sbjct: 198 HFDAEETWTKT-SKNYNLFLVAAHEFGHSLGLSHSTDPGALMYPNYAFSEPSTYSLPQDD 256
Query: 1430 VKGIQELYGASPDIDXXXXXXXXXXXXXXEICKQDIVFDGISQIRGEIFFFKDRFIWRTV 1609
+ GIQ +YG S + C + FD I+ +RGEI FFKD++ WR
Sbjct: 257 INGIQAIYGPSSN------PVQPTGPTTPRACDPRLTFDAIATLRGEIIFFKDKYFWRR- 309
Query: 1610 TPRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPLT 1789
P+ + + ++ FWP L I A YE ++ F GN+YW S +++GYPK ++
Sbjct: 310 HPQLRRVELNFISLFWPSLRNGIQAAYEDSDKDLVFVFKGNKYWALSGYDIQQGYPKSIS 369
Query: 1790 SLGLPPDVQKVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNL 1969
+ G P VQ +DAA ++ KTY F ++FWRY++ ++ MDPG+PK A + I +
Sbjct: 370 NYGFPSSVQAIDAAVSY--RGKTYFFVNNQFWRYDDQRQSMDPGYPKSTASTFQGIESKI 427
Query: 1970 DAVVDLQGGGHSYFFKGAYYLKLENQSLKSVKFGSIKSDWLGC 2098
DAV Q FF G Y + + + + + WL C
Sbjct: 428 DAV--FQQHHFFLFFSGPIYYAFDLNARRVTRIDR-SNRWLNC 467
Score = 174 bits (442), Expect = 2e-43
Identities = 85/185 (45%), Positives = 117/185 (63%), Gaps = 8/185 (4%)
Frame = +2
Query: 230 PGDVAPKTDKELAVQYLNTFYGCP--------KESCNLFVLKDTLKKMQKFFGLPQTGEL 385
P + + + ++A YL FY P ++S + V +TLK+MQ+FFGL +TG+L
Sbjct: 24 PSESPEEKNAKIAQDYLEKFYQLPTYRYKYERRKSASEIV--ETLKEMQRFFGLNETGKL 81
Query: 386 DQSTIETMRKPRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFR 565
+ T+E MRKPRCG PD ++ P PKW +T +TYRII YT L V+ A+A +
Sbjct: 82 NNETLEMMRKPRCGVPDSGDFMLTPGNPKWKQTTLTYRIIKYTQQLPKTDVESIIAKALQ 141
Query: 566 VWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDD 745
+WS +PL+F + EADI I F + +HGD PFDG +G+LAHAF PGPG+GGD HFD
Sbjct: 142 LWSQASPLKFISTSEEEADIKIAFVQRDHGDNSPFDGPNGILAHAFQPGPGIGGDVHFDA 201
Query: 746 DELWT 760
+E WT
Sbjct: 202 EETWT 206
>ref|XP_003129864.1| PREDICTED: neutrophil collagenase [Sus scrofa].
Length = 468
Score = 192 bits (487), Expect = 1e-48
Identities = 102/283 (36%), Positives = 152/283 (53%), Gaps = 2/283 (0%)
Frame = +2
Query: 1256 NYDDDRKWGFCPDQGYSLFLVAAHEFGHAMGLEHSEDPGALMAPIYTYTK--NFRLSHDD 1429
++D + W + Y+LFLVAAHEFGH++GL HS DPGALM P Y +++ + L DD
Sbjct: 198 HFDAEETWTKT-SKNYNLFLVAAHEFGHSLGLSHSTDPGALMYPNYAFSEPSTYSLPQDD 256
Query: 1430 VKGIQELYGASPDIDXXXXXXXXXXXXXXEICKQDIVFDGISQIRGEIFFFKDRFIWRTV 1609
+ GIQ +YG S + C + FD I+ +RGEI FFKD++ WR
Sbjct: 257 INGIQAIYGPSSN------PVQPTGPTTPRACDPRLTFDAIATLRGEIIFFKDKYFWRR- 309
Query: 1610 TPRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPLT 1789
P+ + + ++ FWP L I A YE ++ F GN+YW S +++GYPK ++
Sbjct: 310 HPQLRRVELNFISLFWPSLRNGIQAAYEDSDKDLVFVFKGNKYWALSGYDIQQGYPKSIS 369
Query: 1790 SLGLPPDVQKVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNL 1969
+ G P VQ +DAA ++ KTY F ++FWRY++ ++ MDPG+PK A + I +
Sbjct: 370 NYGFPSSVQAIDAAVSY--RGKTYFFVNNQFWRYDDQRQSMDPGYPKSTASTFQGIESKI 427
Query: 1970 DAVVDLQGGGHSYFFKGAYYLKLENQSLKSVKFGSIKSDWLGC 2098
DAV Q FF G Y + + + + + WL C
Sbjct: 428 DAV--FQQHHFFLFFSGPIYYAFDLNARRVTRIDR-SNRWLNC 467
Score = 174 bits (441), Expect = 2e-43
Identities = 85/185 (45%), Positives = 116/185 (62%), Gaps = 8/185 (4%)
Frame = +2
Query: 230 PGDVAPKTDKELAVQYLNTFYGCP--------KESCNLFVLKDTLKKMQKFFGLPQTGEL 385
P + + + ++A YL FY P ++S + V +TLK+MQ+FFGL +TG L
Sbjct: 24 PSESPEEKNAKIAQDYLEKFYQLPTYRYKYERRKSASEIV--ETLKEMQRFFGLNETGRL 81
Query: 386 DQSTIETMRKPRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFR 565
+ T+E MRKPRCG PD ++ P PKW +T +TYRII YT L V+ A+A +
Sbjct: 82 NNETLEMMRKPRCGVPDSGDFMLTPGNPKWKQTTLTYRIIKYTQQLPKTDVESIIAKALQ 141
Query: 566 VWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDD 745
+WS +PL+F + EADI I F + +HGD PFDG +G+LAHAF PGPG+GGD HFD
Sbjct: 142 LWSQASPLKFISTSEEEADIKIAFVQRDHGDNSPFDGPNGILAHAFQPGPGIGGDVHFDA 201
Query: 746 DELWT 760
+E WT
Sbjct: 202 EETWT 206
>ref|NP_001159701.1| interstitial collagenase [Sus scrofa].
Length = 469
Score = 191 bits (485), Expect = 2e-48
Identities = 105/285 (36%), Positives = 155/285 (54%), Gaps = 3/285 (1%)
Frame = +2
Query: 1253 ANYDDDRKW--GFCPDQGYSLFLVAAHEFGHAMGLEHSEDPGALMAPIYTYTKNFRLSHD 1426
A++D+D +W F + Y+L+ VAAHE GH++GL HS D GALM P Y YT + +LS D
Sbjct: 195 AHFDEDERWTKNF---RDYNLYRVAAHELGHSLGLSHSTDIGALMYPNYIYTGDVQLSQD 251
Query: 1427 DVKGIQELYGASPDIDXXXXXXXXXXXXXXEICKQDIVFDGISQIRGEIFFFKDRFIWRT 1606
D+ GIQ +YG S + ++C + FD I+ +RGE+ FFKDRF RT
Sbjct: 252 DIDGIQAIYGPSEN------PVQPSGPQTPQVCDSKLTFDAITTLRGELMFFKDRFYMRT 305
Query: 1607 VTPRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPL 1786
+ + + ++ FWP++P + A YE ++ FF GN+YW + GYPK +
Sbjct: 306 NSFYPE-VELNFISVFWPQVPNGLQAAYEIADRDEVRFFKGNKYWAVRGQDVLYGYPKDI 364
Query: 1787 -TSLGLPPDVQKVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPD 1963
S G P V+ +DAA KTY F + WRY+E K+ MD G+PK+IA+ + I +
Sbjct: 365 HRSFGFPSTVKNIDAAVFEEDTGKTYFFVAHECWRYDEYKQSMDTGYPKMIAEEFPGIGN 424
Query: 1964 NLDAVVDLQGGGHSYFFKGAYYLKLENQSLKSVKFGSIKSDWLGC 2098
+DAV Q G YFF G + + ++ + + S W C
Sbjct: 425 KVDAV--FQKDGFLYFFHGTRQYQFDFKTKRILTLQKANS-WFNC 466
Score = 188 bits (477), Expect = 2e-47
Identities = 89/175 (50%), Positives = 120/175 (68%), Gaps = 6/175 (3%)
Frame = +2
Query: 254 DKELAVQYLNTFY-----GCPKESC-NLFVLKDTLKKMQKFFGLPQTGELDQSTIETMRK 415
D E+ +YL +Y G P E N ++ + LK+MQ+FFGL TG+ D T+ M++
Sbjct: 30 DVEIVQKYLKNYYNLNSDGVPVEKKRNSGLVVEKLKQMQQFFGLKVTGKPDAETLNVMKQ 89
Query: 416 PRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFRVWSDVTPLRF 595
PRCG PDVA + P P+W+ T +TYRI YTPDL E VD A +AF++WS+V+PL F
Sbjct: 90 PRCGVPDVAEFVLTPGNPRWENTHLTYRIENYTPDLSREDVDRAIEKAFQLWSNVSPLTF 149
Query: 596 SRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWT 760
+++ +G+ADIMI+F R +H D PFDG G LAHAF PGPG+GGD+HFD+DE WT
Sbjct: 150 TKVSEGQADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWT 204
>ref|NP_001093408.1| macrophage metalloelastase [Sus scrofa].
Length = 466
Score = 190 bits (482), Expect = 4e-48
Identities = 92/183 (50%), Positives = 124/183 (67%), Gaps = 8/183 (4%)
Frame = +2
Query: 236 DVAPKTDKELAVQ-YLNTFYGCPKESCNLFVLK-------DTLKKMQKFFGLPQTGELDQ 391
D++P+ + + Q +L FYG E+ + +K D +++MQ+F GL TG+LD
Sbjct: 22 DLSPEENHVVFAQKFLGKFYGLTIETTPMTKIKVNGHSMEDKIQEMQQFLGLNVTGQLDA 81
Query: 392 STIETMRKPRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFRVW 571
T++ M KPRCG PDV N+ F P +P W K +TYRI YTPD+ P+ VD A +AF+ W
Sbjct: 82 PTLDMMHKPRCGVPDVHNFMFMPGRPVWKKHFLTYRINNYTPDMRPKDVDYAIQKAFQAW 141
Query: 572 SDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDE 751
S+VTPL+F +I GEADIMI F EHGD FDG+ G+LAHAFAPGPG+GGD+HFD+ E
Sbjct: 142 SNVTPLKFRKIDAGEADIMIKFALGEHGDFNSFDGQGGVLAHAFAPGPGIGGDAHFDEAE 201
Query: 752 LWT 760
+WT
Sbjct: 202 IWT 204
Score = 163 bits (412), Expect = 6e-40
Identities = 96/263 (36%), Positives = 136/263 (51%)
Frame = +2
Query: 1253 ANYDDDRKWGFCPDQGYSLFLVAAHEFGHAMGLEHSEDPGALMAPIYTYTKNFRLSHDDV 1432
A++D+ W ++G +LFLVA HE GH++GL HS DP A+M P Y +F LS DD+
Sbjct: 195 AHFDEAEIWTK-NNKGTNLFLVALHELGHSLGLGHSNDPTAIMFPYINYN-SFHLSADDI 252
Query: 1433 KGIQELYGASPDIDXXXXXXXXXXXXXXEICKQDIVFDGISQIRGEIFFFKDRFIWRTVT 1612
+GIQ LYG C ++ FD ++ +R +IFFFKDRF W
Sbjct: 253 RGIQSLYGPPEK----HQPSSNPDSSDPAACDPNLSFDAVTTVRDKIFFFKDRFFWWK-H 307
Query: 1613 PRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPLTS 1792
P L+++ LP I A YE F ++YW+ S + YPK + +
Sbjct: 308 PERPERRVSLISSLGANLPSGIQAAYEIGFRNHVFLFKDDKYWLISNLKSQLNYPKSIYT 367
Query: 1793 LGLPPDVQKVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLD 1972
LG P V+K+DAA + KTY F ++FWRY+E + MDPG+PK I + I +D
Sbjct: 368 LGFPYSVKKIDAAVFNPRIYKTYFFVDNQFWRYDERRHIMDPGYPKSITTYFPGIGPTID 427
Query: 1973 AVVDLQGGGHSYFFKGAYYLKLE 2041
AV H YFF+G L+ +
Sbjct: 428 AV--FYYNKHYYFFQGPDVLEYD 448
>ref|NP_999404.1| matrix metalloproteinase-14 precursor [Sus scrofa].
Length = 580
Score = 187 bits (476), Expect = 2e-47
Identities = 111/287 (38%), Positives = 153/287 (53%), Gaps = 17/287 (5%)
Frame = +2
Query: 1298 GYSLFLVAAHEFGHAMGLEHSEDPGALMAPIYTY--TKNFRLSHDDVKGIQELYGASPDI 1471
G +FLVA HE GHA+GLEHS DP A+MAP Y + T+NF L DD +GIQ+LYG+
Sbjct: 228 GNDIFLVAVHELGHALGLEHSNDPSAIMAPFYQWMDTENFVLPDDDRRGIQQLYGSESGF 287
Query: 1472 DXXXXXXXXXXXXXX------------EICKQDIVFDGISQIRGEIFFFKDRFIWRTVTP 1615
IC D FD ++ +RGE+F FK+R+ WR
Sbjct: 288 PTKMPPQPRTTSKPSVPDKPKNPTYGPNIC--DGNFDTVAMLRGEMFVFKERWFWRVRKN 345
Query: 1616 RDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPLTSL 1795
+ P+ + FW LP I+ YE ++ K VFF G+++WV+ ++LE GYPK + L
Sbjct: 346 QVMDGYPMPIGQFWRGLPASINTAYER-KDGKFVFFKGDKHWVFDEASLEPGYPKHIKEL 404
Query: 1796 GLPPDVQKVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDA 1975
G K+DAA W N K Y F G+K++R+NE + +D +PK I W IP++
Sbjct: 405 GRRLPTDKIDAALFWMPNGKDYFFRGNKYYRFNEELRAVDSEYPKNI-KVWEGIPESPRG 463
Query: 1976 VVDLQGGGHSYFFKGAYYLKLENQSLKSVKFGSIKS---DWLGC*AG 2107
+YF+KG Y K NQ LK V+ G KS DW+GC +G
Sbjct: 464 SFMGSDEVFTYFYKGNKYWKFNNQKLK-VEPGYPKSALRDWMGCPSG 509
Score = 136 bits (342), Expect = 7e-32
Identities = 69/163 (42%), Positives = 91/163 (55%), Gaps = 17/163 (10%)
Frame = +2
Query: 326 LKDTLKKMQKFFGLPQTGELDQSTIETMRKPRCGNPD---------VANYNFFPRKPKWD 478
L + MQ+F+GL TG+ D T++ MR+PRCG PD V + + KW
Sbjct: 59 LSAAIAAMQRFYGLRVTGKADADTMKAMRRPRCGVPDKFGAEIKANVRRKRYAIQGLKWQ 118
Query: 479 KTQITYRIIGYTPDLDPETVDDAFARAFRVWSDVTPLRFSRI--------HDGEADIMIN 634
+IT+ I YTP + +A +AFRVW TPLRF + H+ +ADIMI
Sbjct: 119 HNEITFCIQNYTPKVGEYATFEAIRKAFRVWESATPLRFREVPYAYIREGHEKQADIMIF 178
Query: 635 FGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWTL 763
F HGD PFDG+ G LAHA+ PGP +GGD+HFD E WT+
Sbjct: 179 FAEGFHGDSTPFDGEGGFLAHAYFPGPNIGGDTHFDSAEPWTV 221
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 77,414,697
Number of extensions: 2406687
Number of successful extensions: 10692
Number of sequences better than 1.0e-05: 34
Number of HSP's gapped: 10469
Number of HSP's successfully gapped: 79
Length of query: 970
Length of database: 11,343,932
Length adjustment: 109
Effective length of query: 861
Effective length of database: 8,630,159
Effective search space: 7430566899
Effective search space used: 7430566899
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PST01_0067_C06
(2912 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 1080 0.0
Sscrofa_Chr17 78 3e-11
>Sscrofa_Chr06
|| Length = 157765593
Score = 1080 bits (545), Expect = 0.0
Identities = 545/545 (100%)
Strand = Plus / Minus
Query: 2350 aagtgatgctttgatattccctatgcagctctgccttgggctgccctggtgctgccacac 2409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27526940 aagtgatgctttgatattccctatgcagctctgccttgggctgccctggtgctgccacac 27526881
Query: 2410 tttaggctcttctccttccacaaccttctgtggcttacagcacccttggagccaaaagag 2469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27526880 tttaggctcttctccttccacaaccttctgtggcttacagcacccttggagccaaaagag 27526821
Query: 2470 actgtctcgggagggcactggtggcccgacagcctgacatggcctagggtaggcggagag 2529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27526820 actgtctcgggagggcactggtggcccgacagcctgacatggcctagggtaggcggagag 27526761
Query: 2530 gggcacggctgggtggccgccccagacacctggccttctcactgctggccgccttagaac 2589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27526760 gggcacggctgggtggccgccccagacacctggccttctcactgctggccgccttagaac 27526701
Query: 2590 cgtccctgcattagcagtttgcttcctatgcactttgttcttgtcttttgatctttttaa 2649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27526700 cgtccctgcattagcagtttgcttcctatgcactttgttcttgtcttttgatctttttaa 27526641
Query: 2650 atttttctacgttgaaattccatttcccgacagaaggactcaggttgtctgaagtcactg 2709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27526640 atttttctacgttgaaattccatttcccgacagaaggactcaggttgtctgaagtcactg 27526581
Query: 2710 cacaatgcctctcagcccacgtggtgatggcccccttgtccactcttatttagtatgtcc 2769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27526580 cacaatgcctctcagcccacgtggtgatggcccccttgtccactcttatttagtatgtcc 27526521
Query: 2770 ctactctgtcactttctccactggatggaggaaaaccaagccatggctccctgcccagcc 2829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27526520 ctactctgtcactttctccactggatggaggaaaaccaagccatggctccctgcccagcc 27526461
Query: 2830 ctcccctcccttcaacggttccccatgggaaacatcaaccagtatgaataaagacaccaa 2889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27526460 ctcccctcccttcaacggttccccatgggaaacatcaaccagtatgaataaagacaccaa 27526401
Query: 2890 ttgag 2894
|||||
Sbjct: 27526400 ttgag 27526396
Score = 577 bits (291), Expect = e-161
Identities = 294/295 (99%)
Strand = Plus / Minus
Query: 1997 ggtcacagctacttcttcaagggcgcgtattacctgaagttggagaaccaaagtctgaag 2056
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27527293 ggtcacagctacttcttcaagggcgcgtattacctgaagttggagaaccaaagtctgaag 27527234
Query: 2057 agcgtgaagttcggaagcatcaaatccgactggctgggctgctgagctggctccacctcc 2116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27527233 agcgtgaagttcggaagcatcaaatccgactggctgggctgctgagctggctccacctcc 27527174
Query: 2117 cccagggcctgcctctccatcgccttctgcacaccgggccctgggtgccaggggaggacc 2176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27527173 cccagggcctgcctctccatcgccttctgcacaccgggccctgggtgccaggggaggacc 27527114
Query: 2177 cggctgggcctggcagccctcagctctgtagttaatcagccttctcacccccacctggta 2236
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27527113 cggctggacctggcagccctcagctctgtagttaatcagccttctcacccccacctggta 27527054
Query: 2237 atttaagaaaccgcagagtggctctgccctgtgctcacggaaaggtgctgatcgt 2291
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27527053 atttaagaaaccgcagagtggctctgccctgtgctcacggaaaggtgctgatcgt 27526999
Score = 446 bits (225), Expect = e-122
Identities = 228/229 (99%)
Strand = Plus / Minus
Query: 271 gcaatacctgaacaccttctacggctgccccaaagagagttgtaacctgtttgtgctgaa 330
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 27551076 gcaatacctgaacaccttctacggctgccccaaagagagttgtaacctgttcgtgctgaa 27551017
Query: 331 ggacacactaaagaagatgcagaagttcttcgggctcccccagacaggcgaactcgacca 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27551016 ggacacactaaagaagatgcagaagttcttcgggctcccccagacaggcgaactcgacca 27550957
Query: 391 gagcaccatcgagaccatgaggaagccgcgctgcggcaaccccgacgtggccaattacaa 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27550956 gagcaccatcgagaccatgaggaagccgcgctgcggcaaccccgacgtggccaattacaa 27550897
Query: 451 cttcttcccccgcaagcccaagtgggacaagacccagatcacctacagg 499
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27550896 cttcttcccccgcaagcccaagtgggacaagacccagatcacctacagg 27550848
Score = 349 bits (176), Expect = 5e-93
Identities = 176/176 (100%)
Strand = Plus / Minus
Query: 1124 gccatgtccactgtgggcgggaactcggaaggtgccccctgcgtcttccccttcaccttc 1183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27543516 gccatgtccactgtgggcgggaactcggaaggtgccccctgcgtcttccccttcaccttc 27543457
Query: 1184 ctgggcaacaagcacgagagctgcaccagcgccggccgcagtgatggcaagttgtggtgc 1243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27543456 ctgggcaacaagcacgagagctgcaccagcgccggccgcagtgatggcaagttgtggtgc 27543397
Query: 1244 gcgaccaccgccaactacgatgatgaccgcaagtggggcttctgccccgatcaagg 1299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27543396 gcgaccaccgccaactacgatgatgaccgcaagtggggcttctgccccgatcaagg 27543341
Score = 349 bits (176), Expect = 5e-93
Identities = 176/176 (100%)
Strand = Plus / Minus
Query: 949 agccctgttcaccatgggtggcaatgccgacggacagccctgcaagttcccgttccgctt 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27544498 agccctgttcaccatgggtggcaatgccgacggacagccctgcaagttcccgttccgctt 27544439
Query: 1009 ccagggcacatcctacaacagctgcaccacggagggccgtacagacggctaccgatggtg 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27544438 ccagggcacatcctacaacagctgcaccacggagggccgtacagacggctaccgatggtg 27544379
Query: 1069 cggcaccaccgaggactacgaccgcgacaagaagtacggcttctgccctgagactg 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27544378 cggcaccaccgaggactacgaccgcgacaagaagtacggcttctgccctgagactg 27544323
Score = 333 bits (168), Expect = 3e-88
Identities = 174/176 (98%)
Strand = Plus / Minus
Query: 775 agtggtgcgtgtgaagtatggaaacgccgacggggagtattgcaagttccccttctcctt 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27547848 agtggtgcgtgtgaagtatggaaacgccgacggggagtattgcaagttccccttctcctt 27547789
Query: 835 caacggcaaggagtataacagctgcaccgacacgggccgcagcgatggcttcctctggtg 894
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 27547788 caacggcaaggagtataacagctgcaccgacacaggccgcagcgatggcttcctttggtg 27547729
Query: 895 ttccaccacctacaacttcgacaaggatggcaagtacggcttctgcccccacgaag 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27547728 ttccaccacctacaacttcgacaaggatggcaagtacggcttctgcccccacgaag 27547673
Score = 321 bits (162), Expect = 1e-84
Identities = 165/166 (99%)
Strand = Plus / Minus
Query: 1725 cagggaatgagtactgggtctattcagccagcaccctggagagagggtaccccaagccgc 1784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27534966 cagggaatgagtactgggtctattcagccagcaccctggagagagggtaccccaagccgc 27534907
Query: 1785 tgaccagcctggggcttccgcctgatgtccagaaagtggatgctgcctttaactggagca 1844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27534906 tgaccagcctggggcttccgcctgatgtccagaaagtggatgctgcctttaactggagca 27534847
Query: 1845 agaacaagaagacatacatcttcgctggagacaagttctggaggta 1890
||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 27534846 agaacaagaagacatacatcttcgctggagataagttctggaggta 27534801
Score = 309 bits (156), Expect = 5e-81
Identities = 156/156 (100%)
Strand = Plus / Minus
Query: 1297 agggtacagcctgttcctggtggccgcccatgagtttggccatgccatggggctggagca 1356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27540901 agggtacagcctgttcctggtggccgcccatgagtttggccatgccatggggctggagca 27540842
Query: 1357 ctcagaggaccctggagccctgatggcccccatctacacctataccaagaacttccgcct 1416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27540841 ctcagaggaccctggagccctgatggcccccatctacacctataccaagaacttccgcct 27540782
Query: 1417 gtcccacgacgatgtcaagggcatccaggagctcta 1452
||||||||||||||||||||||||||||||||||||
Sbjct: 27540781 gtcccacgacgatgtcaagggcatccaggagctcta 27540746
Score = 293 bits (148), Expect = 3e-76
Identities = 151/152 (99%)
Strand = Plus / Minus
Query: 496 caggatcattggctacacgcctgatctggaccccgaaacggtggatgatgccttcgctcg 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27550007 caggatcattggctacacgcctgatctggaccccgaaacggtggatgatgccttcgctcg 27549948
Query: 556 ggccttccgcgtctggagtgacgtgaccccattacggttttcccggatccatgacggaga 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27549947 ggccttccgcgtctggagtgacgtgaccccattacggttttcccggatccatgacggaga 27549888
Query: 616 ggctgacatcatgatcaacttcggccgctggg 647
||||||||||||||||||||| ||||||||||
Sbjct: 27549887 ggctgacatcatgatcaactttggccgctggg 27549856
Score = 276 bits (139), Expect = 7e-71
Identities = 139/139 (100%)
Strand = Plus / Minus
Query: 1590 ggttcatctggcggacagtgacaccacgtgacaagcccatggggcccctgctggtggcca 1649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27536334 ggttcatctggcggacagtgacaccacgtgacaagcccatggggcccctgctggtggcca 27536275
Query: 1650 cattctggcctgagctcccggaaaagatcgatgctgtgtacgaggccccacaggaggaga 1709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27536274 cattctggcctgagctcccggaaaagatcgatgctgtgtacgaggccccacaggaggaga 27536215
Query: 1710 aggctgtgttctttgcagg 1728
|||||||||||||||||||
Sbjct: 27536214 aggctgtgttctttgcagg 27536196
Score = 276 bits (139), Expect = 7e-71
Identities = 139/139 (100%)
Strand = Plus / Minus
Query: 1454 ggggcctcccctgacattgacacgggcaccggccccacccccacgctgggtcctgtcact 1513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27539339 ggggcctcccctgacattgacacgggcaccggccccacccccacgctgggtcctgtcact 27539280
Query: 1514 cccgagatctgcaaacaggacatcgtcttcgatggcatctctcagatccgcggcgagatc 1573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27539279 cccgagatctgcaaacaggacatcgtcttcgatggcatctctcagatccgcggcgagatc 27539220
Query: 1574 ttcttcttcaaggaccggt 1592
|||||||||||||||||||
Sbjct: 27539219 ttcttcttcaaggaccggt 27539201
Score = 258 bits (130), Expect = 2e-65
Identities = 130/130 (100%)
Strand = Plus / Minus
Query: 1 gaatatcgctcggagcgctgcgcggcgctgggggagcaggcgccagccaggcggcgacgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27553994 gaatatcgctcggagcgctgcgcggcgctgggggagcaggcgccagccaggcggcgacgc 27553935
Query: 61 ggccacacgcagcgagccagccacccccgggcgacgcgcggggcccgggagcgcaatgac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27553934 ggccacacgcagcgagccagccacccccgggcgacgcgcggggcccgggagcgcaatgac 27553875
Query: 121 cgaggcgcga 130
||||||||||
Sbjct: 27553874 cgaggcgcga 27553865
Score = 236 bits (119), Expect = 6e-59
Identities = 129/131 (98%), Gaps = 1/131 (0%)
Strand = Plus / Minus
Query: 647 gagcacggagatggatacccctttgatggcaaggacggg-ctcctggctcacgccttcgc 705
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 27548214 gagcacggagatggatacccctttgatggcaaggacggggctcctggctcacgccttcgc 27548155
Query: 706 cccgggccctggcgtcgggggagactcccactttgacgatgatgagctgtggaccctggg 765
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 27548154 cccgggccctggcgtcgggggagactcccactttgacgacgatgagctgtggaccctggg 27548095
Query: 766 agaaggacaag 776
|||||||||||
Sbjct: 27548094 agaaggacaag 27548084
Score = 218 bits (110), Expect = 1e-53
Identities = 113/114 (99%)
Strand = Plus / Minus
Query: 1886 aggtacaatgaagtgaagaagaagatggatcctggcttccccaagctcattgcagacgcc 1945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27529257 aggtacaatgaagtgaagaagaagatggatcctggcttccccaagctcattgcagacgcc 27529198
Query: 1946 tggaatgccatcccggataacctggatgccgtggtggacctgcagggcgggggt 1999
|||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 27529197 tggaatgccatcccggataacctggacgccgtggtggacctgcagggcgggggt 27529144
Score = 119 bits (60), Expect = 9e-24
Identities = 60/60 (100%)
Strand = Plus / Minus
Query: 212 tcgcccatcatcaagtttcccggagatgtcgcccccaaaacggacaaagagttggctgtg 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27553784 tcgcccatcatcaagtttcccggagatgtcgcccccaaaacggacaaagagttggctgtg 27553725
>Sscrofa_Chr17
|| Length = 69701581
Score = 77.8 bits (39), Expect = 3e-11
Identities = 93/111 (83%)
Strand = Plus / Plus
Query: 647 gagcacggagatggatacccctttgatggcaaggacgggctcctggctcacgccttcgcc 706
|||||||||||||| || ||||| ||||| ||||||||||||||||| ||||||||| |
Sbjct: 53821648 gagcacggagatgggtatcccttcgatgggaaggacgggctcctggcacacgccttccct 53821707
Query: 707 ccgggccctggcgtcgggggagactcccactttgacgatgatgagctgtgg 757
|| ||||| ||| | |||||| ||||||| |||||||| ||| |||||
Sbjct: 53821708 cctggcccgggcattcaaggagacgcccacttcgacgatgaagagttgtgg 53821758
Score = 63.9 bits (32), Expect = 5e-07
Identities = 74/88 (84%)
Strand = Plus / Plus
Query: 1030 ctgcaccacggagggccgtacagacggctaccgatggtgcggcaccaccgaggactacga 1089
||||||||| || ||||| ||||||||||||| |||||||||||||||| |||||||
Sbjct: 53822325 ctgcaccaccgacggccgctcagacggctaccgctggtgcggcaccaccgccaactacga 53822384
Query: 1090 ccgcgacaagaagtacggcttctgccct 1117
|| |||||| || ||||||||||||
Sbjct: 53822385 ccaggacaagctttatggcttctgccct 53822412
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 69,159,026
Number of extensions: 505
Number of successful extensions: 505
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 504
Number of HSP's successfully gapped: 17
Length of query: 2912
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2890
Effective length of database: 2,808,408,574
Effective search space: 8116300778860
Effective search space used: 8116300778860
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)